Citrus Sinensis ID: 003829
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | yes | no | 0.993 | 0.962 | 0.676 | 0.0 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.948 | 0.914 | 0.388 | 1e-156 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.673 | 0.619 | 0.278 | 1e-78 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.638 | 0.551 | 0.301 | 6e-72 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.699 | 0.701 | 0.275 | 7e-72 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.672 | 0.582 | 0.285 | 3e-65 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.610 | 0.663 | 0.303 | 1e-64 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.770 | 0.701 | 0.258 | 1e-63 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.604 | 0.801 | 0.284 | 5e-63 | |
| Q9C6S6 | 840 | Putative pentatricopeptid | no | no | 0.687 | 0.648 | 0.284 | 5e-63 |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1133 bits (2930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/822 (67%), Positives = 654/822 (79%), Gaps = 34/822 (4%)
Query: 1 MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNN 60
MA L+LPLLLP P +KP Q NHH P ++P P L+ N
Sbjct: 1 MADKLALPLLLPCTPSSKPYSHDQ-NHHISRTPFLTTSLSSPPPPPVEPLLHDVFLHQNP 59
Query: 61 SSSQPIH----QPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSV 116
+S QPI + R+RTR+GKSRD N GKPWS+H LS +GQQVL+SLI+ +FD +DSV
Sbjct: 60 NSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSV 119
Query: 117 LSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVI 176
LS+L + +K E ++LL +KGLGFHKK DLAL F+WF KD +L SV+
Sbjct: 120 LSELFEPFK-DKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMK--QKDYQSMLDNSVV 176
Query: 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEE 236
A++ISMLGKEG+VS AA++ +GL +DGF +DVY+YTSLI+ +A++GRYREAV VFKKMEE
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 237 EGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE 296
+GCKPTLITYNVILNV+GKMG PWNKI +LVE MKS G+ PD+YT+NTLI+CC+RGSLH+
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356
EAA VFEEMK AGFS DKVTYNALLDVYGK RPKEAM+VL EM +NG PSIVTYNSLI
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416
SAYARDG+L+EAMELK QM E G PDVFTYTTLLSGFE+AGK ESAM +FEEMR+AGCK
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476
PNICTFNA IKM+GNRG F EMMK+FDEIN C PDIVTWNTLLAVFGQNGMDSEVSGV
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536
FKEMKRAGF+PER+TFNTLISAYSRCGSF+QAM++Y+RML+AGVTPDLSTYN VLAALAR
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS--------- 587
GGMWEQSEK+ AEM+ GRCKPNELTY SLLHAYANG+EI M +L+EE+YS
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 588 -----------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630
ERAF ELK++GFSPDI TLN+M+SIYGRRQMVAK N +L +M
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656
Query: 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690
+ GFTPS+ TYN+LMYM+SRS +F ++E++LREILAKGIKPDIISYNTVI+AYCRN RM+
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750
+ASRIFSEMR+SG+VPDVITYNTF+ SYAADS+F EA+ VVRYMIK GC+PNQNTYNSIV
Sbjct: 717 DASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 751 DGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 792
DGYCKLN++ EA FV +L LDPH K + +L +RI KKW
Sbjct: 777 DGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERIVKKW 818
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/803 (38%), Positives = 448/803 (55%), Gaps = 51/803 (6%)
Query: 16 PAKPLFLTQTNHHNLPPPSPPQQQTTPSASPT-----------TISPLLQDLYNNNSSSQ 64
P KP + Q+ PPPS Q+ +S T + LL L + SS
Sbjct: 7 PHKPPYPIQSKR---PPPSQSSNQSIKFSSATLHLPPPSPPSFPLDSLLHHLVHL-SSPP 62
Query: 65 PIHQPRSRTR---LGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVLSQLL 121
P H + R L S DS+ KP + + L+ L +V ++S++ Q L
Sbjct: 63 PRHSNSAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKK--EVVLVNSIVEQPL 120
Query: 122 DQNP----GEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIA 177
KSE L DL+ +VKGL + A+ +FEW S G L L VI
Sbjct: 121 TGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWL-VLSSNSGALKLDHQVIE 179
Query: 178 VLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEE 237
+ + +LG+E + SVAA LL + + +DV AYT+++ Y+ G+Y +A+ +F++M+E
Sbjct: 180 IFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEM 239
Query: 238 GCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297
G PTL+TYNVIL+V+GKMG W KI+ +++ M+S G+K D +T +T++S C R L E
Sbjct: 240 GPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLRE 299
Query: 298 AAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357
A F E+K G+ P VTYNALL V+GK EA+ VL+EM+ N C VTYN L++
Sbjct: 300 AKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVA 359
Query: 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP 417
AY R G +EA + M + G+ P+ TYTT++ + KAGK++ A+K+F M+ AGC P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
Query: 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVF 477
N CT+NA++ + G + EM+K+ ++ C P+ TWNT+LA+ G GMD V+ VF
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 478 KEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537
+EMK GF P+RDTFNTLISAY RCGS A +Y M AG ++TYNA+L ALAR
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539
Query: 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIY----------- 586
G W E + ++MK KP E +YS +L YA G + + I
Sbjct: 540 GDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLL 599
Query: 587 ---------------SERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 631
SERAF KK G+ PD+ N+M+SI+ R M + IL + +
Sbjct: 600 RTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRE 659
Query: 632 SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 691
G +P L TYN+LM MY R +AE++L+ + +KPD++SYNTVI +CR G M+E
Sbjct: 660 DGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQE 719
Query: 692 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751
A R+ SEM + G+ P + TYNTFV+ Y A +F E DV+ M K C+PN+ T+ +VD
Sbjct: 720 AVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVD 779
Query: 752 GYCKLNQRYEAITFVNNLSKLDP 774
GYC+ + EA+ FV+ + DP
Sbjct: 780 GYCRAGKYSEAMDFVSKIKTFDP 802
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/579 (27%), Positives = 298/579 (51%), Gaps = 45/579 (7%)
Query: 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKM 234
+ ++IS+LG+EG + + + G V++YT+LI Y NGRY ++ + +M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202
Query: 235 EEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294
+ E P+++TYN ++N + G+ W ++ L M+ G++PD T+NTL+S C L
Sbjct: 203 KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGL 262
Query: 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS 354
+EA VF M G PD TY+ L++ +GK RR ++ +L EM G LP I +YN
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414
L+ AYA+ G ++EAM + QM G TP+ TY+ LL+ F ++G+ + ++F EM+S+
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474
P+ T+N LI++ G G F E++ +F ++ + N +PD+ T+ ++ G+ G+ +
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL 534
+ + M +P + +I A+ + +++A+ + M E G P + T++++L +
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSF 502
Query: 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLEL 594
ARGG+ ++SE I + + N T+++ + AY G + ++ + + ++++
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV---------KTYVDM 553
Query: 595 KKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 654
+K PD TL A++S+Y ++V + E M S PS+ Y ++ +Y ++E +
Sbjct: 554 EKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERW 613
Query: 655 ARAEDVLREILA-----------KGIKPD-------------------------IISYNT 678
++L E+L+ + IK D I YN
Sbjct: 614 DDVNELLEEMLSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNA 673
Query: 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717
++ A G+ + A+R+ +E GL P++ N V S
Sbjct: 674 LLDALWWLGQKERAARVLNEATKRGLFPELFRKNKLVWS 712
|
Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 275/528 (52%), Gaps = 22/528 (4%)
Query: 26 NHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRS----------RTRL 75
NH S P+ P +S T++P N S P+ P+S TR
Sbjct: 88 NHRPYGASSSPRGSAPPPSSVATVAPAQLSQPPNFS---PLQTPKSDLSSDFSGRRSTRF 144
Query: 76 GKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGEKSEDLGAD 135
R K R S+ + LQ+ ID S D + S++ + G D
Sbjct: 145 VSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSD------D 198
Query: 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASL 195
I++ LG + D A+ +E+ ++ +G + + +IS LG+ GKV++A +
Sbjct: 199 CTYIIRELGNRNECDKAVGFYEF---AVKRERRKNEQGKLASAMISTLGRYGKVTIAKRI 255
Query: 196 LHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255
G+ VYA+++LI+ Y +G + EA+ VF M+E G +P L+TYN +++ GK
Sbjct: 256 FETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGK 315
Query: 256 MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV 315
GM + ++ + M+ GV+PD TFN+L++ C RG L E A +F+EM D
Sbjct: 316 GGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 375
Query: 316 TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375
+YN LLD K + A ++L +M + +P++V+Y+++I +A+ G +EA+ L +M
Sbjct: 376 SYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Query: 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNF 435
+GI D +Y TLLS + K G+ E A+ + EM S G K ++ T+NAL+ +G +G +
Sbjct: 436 RYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKY 495
Query: 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTL 495
E+ KVF E+ + + P+++T++TL+ + + G+ E +F+E K AG + ++ L
Sbjct: 496 DEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSAL 555
Query: 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543
I A + G A+S+ M + G++P++ TYN+++ A R ++S
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 165/598 (27%), Positives = 295/598 (49%), Gaps = 43/598 (7%)
Query: 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAV-MVFKKME 235
+LI + G++ + + L + K GF +D A+T L+ ++ R +A+ +V ++M
Sbjct: 91 GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150
Query: 236 EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295
E GC P + +YN+ L++G+ ++ +++ R G
Sbjct: 151 ELGCIPNVFSYNI-----------------LLKGLCDENRSQEALELLHMMADDRGG--- 190
Query: 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355
G PD V+Y +++ + K +A EM G LP +VTYNS+
Sbjct: 191 -------------GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSI 237
Query: 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415
I+A + +++AME+ MV+ G+ PD TY ++L G+ +G+ + A+ ++MRS G
Sbjct: 238 IAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGV 297
Query: 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSG 475
+P++ T++ L+ G +E K+FD + K KP+I T+ TLL + G E+ G
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357
Query: 476 VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535
+ M R G P+ F+ LI AY++ G DQAM ++ +M + G+ P+ TY AV+ L
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417
Query: 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595
+ G E + F +M P + Y+SL+H + ++ +E LE+
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER---------AEELILEML 468
Query: 596 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655
+G + N++I + + V ++ ++ M G P++ TYNTL+ Y +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528
Query: 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 715
A +L +++ G+KP+ ++Y+T+I YC+ RM++A +F EM SG+ PD+ITYN +
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Query: 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773
A ++ + + G + +TYN I+ G CK +A+ NL +D
Sbjct: 589 QGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 157/550 (28%), Positives = 278/550 (50%), Gaps = 17/550 (3%)
Query: 204 FDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 263
+ + + Y +L+ + A G E V+ +M E+ P + TYN ++N Y K+G +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLG-NVEEA 237
Query: 264 MALVEGMKSAGVKPDSYTFNTLI-SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322
V + AG+ PD +T+ +LI C+R L + A VF EM L G ++V Y L
Sbjct: 238 NQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL-DSAFKVFNEMPLKGCRRNEVAYTHL-- 294
Query: 323 VYGKC--RRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI 380
++G C RR EAM + +MK + C P++ TY LI + EA+ L +M E GI
Sbjct: 295 IHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGI 354
Query: 381 TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440
P++ TYT L+ K E A ++ +M G PN+ T+NALI + RG + +
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414
Query: 441 VFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYS 500
V + + P+ T+N L+ + ++ + + GV +M +P+ T+N+LI
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQC 473
Query: 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560
R G+FD A + M + G+ PD TY +++ +L + E++ +F ++ PN +
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV 533
Query: 561 TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 620
Y++L+ Y ++D+ + E++ S+ P+ T NA+I +
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCL---------PNSLTFNALIHGLCADGKLK 584
Query: 621 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680
+ + M G P+++T L++ + +F A +++L+ G KPD +Y T I
Sbjct: 585 EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI 644
Query: 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 740
YCR GR+ +A + ++MR++G+ PD+ TY++ + Y A DV++ M GC+
Sbjct: 645 QTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCE 704
Query: 741 PNQNTYNSIV 750
P+Q+T+ S++
Sbjct: 705 PSQHTFLSLI 714
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/495 (30%), Positives = 252/495 (50%), Gaps = 11/495 (2%)
Query: 270 MKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329
++S G N LI R E A GV++E+ +G + T N +++ K +
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTT 389
++ L +++ G P IVTYN+LISAY+ GL+EEA EL M G +P V+TY T
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 390 LLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449
+++G K GK E A +VF EM +G P+ T+ +L+ +G+ VE KVF ++ +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 450 CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAM 509
PD+V +++++++F ++G + F +K AG IP+ + LI Y R G AM
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 510 SIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569
++ ML+ G D+ TYN +L L + M +++K+F EM P+ T + L+ +
Sbjct: 431 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490
Query: 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 629
+ + L F ++K+K D+ T N ++ +G+ + EI M
Sbjct: 491 CKLGNLQNAMEL---------FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM 541
Query: 630 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689
P+ +Y+ L+ + A A V E+++K IKP ++ N++I YCR+G
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNA 601
Query: 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPNQNTYN 747
+ +M G VPD I+YNT + + + +A +V+ M ++ G P+ TYN
Sbjct: 602 SDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYN 661
Query: 748 SIVDGYCKLNQRYEA 762
SI+ G+C+ NQ EA
Sbjct: 662 SILHGFCRQNQMKEA 676
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 162/627 (25%), Positives = 298/627 (47%), Gaps = 16/627 (2%)
Query: 139 IVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHG 198
+++G + D AL + + +S S D ++VL V I GK GKV +A H
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSS-SLDADIVLYN----VCIDSFGKVGKVDMAWKFFHE 263
Query: 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258
+ +G D YTS+I R EAV +F+ +E+ P YN ++ YG G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAG- 322
Query: 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318
+++ +L+E ++ G P +N +++C R+ +EA VFEEMK +P+ TYN
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYN 381
Query: 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378
L+D+ + + A ++ M+ G P++ T N ++ + L+EA + +M
Sbjct: 382 ILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK 441
Query: 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438
TPD T+ +L+ G K G+ + A KV+E+M + C+ N + +LIK N G +
Sbjct: 442 VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDG 501
Query: 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498
K++ ++ NC PD+ NT + + G + +F+E+K F+P+ +++ LI
Sbjct: 502 HKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHG 561
Query: 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN 558
+ G ++ ++ M E G D YN V+ + G ++ ++ EMK +P
Sbjct: 562 LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPT 621
Query: 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM 618
+TY S++ A +D+ L EE S+R +EL ++ +++I +G+
Sbjct: 622 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR--IEL-------NVVIYSSLIDGFGKVGR 672
Query: 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 678
+ + IL + G TP+L T+N+L+ ++E A + + P+ ++Y
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738
+I C+ + +A + EM+ G+ P I+Y T ++ A EA + G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 739 CKPNQNTYNSIVDGYCKLNQRYEAITF 765
P+ YN++++G N+ +A +
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSL 819
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/492 (28%), Positives = 247/492 (50%), Gaps = 13/492 (2%)
Query: 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337
D + N L R G L EE E M G PD + L+ + + + ++A ++L
Sbjct: 102 DVESNNHLRQMVRTGEL-EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKIL 160
Query: 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397
++ +G +P ++TYN +IS Y + G + A+ + +M ++PDV TY T+L +
Sbjct: 161 EILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDS 217
Query: 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW 457
GK + AM+V + M C P++ T+ LI+ MK+ DE+ C PD+VT+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Query: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517
N L+ + G E +M +G P T N ++ + G + A + ML
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577
G +P + T+N ++ L R G+ ++ I +M C+PN L+Y+ LLH + +++D+
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR 397
Query: 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637
+ E + S +G PDI T N M++ + V EIL+ ++ G +P
Sbjct: 398 AIEYLERMVS---------RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697
L TYNT++ +++ +A +L E+ AK +KPD I+Y++++ R G++ EA + F
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508
Query: 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757
E G+ P+ +T+N+ + A+D + +MI +GCKPN+ +Y +++G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568
Query: 758 QRYEAITFVNNL 769
EA+ +N L
Sbjct: 569 MAKEALELLNEL 580
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 158/555 (28%), Positives = 264/555 (47%), Gaps = 10/555 (1%)
Query: 188 KVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYN 247
++ VA+ LL + G +V + +LI + G A +FK ME+ G +P LI Y+
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325
Query: 248 VILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKL 307
+++ Y K GM + + GVK D F++ I + A+ V++ M
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHK-GVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLC 384
Query: 308 AGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEE 367
G SP+ VTY L+ + R EA + ++ G PSIVTY+SLI + + G L
Sbjct: 385 QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444
Query: 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK 427
L M+++G PDV Y L+ G K G AM+ +M + N+ FN+LI
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLID 504
Query: 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487
F E +KVF + KPD+ T+ T++ V G E +F M + G P
Sbjct: 505 GWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEP 564
Query: 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIF 547
+ + TLI A+ + + ++ M ++ D++ N V+ L + E + K F
Sbjct: 565 DALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFF 624
Query: 548 AEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLN 607
+ G+ +P+ +TY++++ Y + R +D+ +ER F LK F P+ TL
Sbjct: 625 NNLIEGKMEPDIVTYNTMICGYCSLRRLDE---------AERIFELLKVTPFGPNTVTLT 675
Query: 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667
+I + + + + M + G P+ TY LM +S+S + + + E+ K
Sbjct: 676 ILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEK 735
Query: 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727
GI P I+SY+ +I C+ GR+ EA+ IF + D+ L+PDV+ Y + Y VEA
Sbjct: 736 GISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 795
Query: 728 LDVVRYMIKQGCKPN 742
+ +M++ G KP+
Sbjct: 796 ALLYEHMLRNGVKPD 810
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| 255555231 | 827 | pentatricopeptide repeat-containing prot | 0.989 | 0.949 | 0.707 | 0.0 | |
| 225429339 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.882 | 0.745 | 0.0 | |
| 449438627 | 831 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.900 | 0.712 | 0.0 | |
| 449530359 | 831 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.900 | 0.711 | 0.0 | |
| 297806221 | 819 | pentatricopeptide repeat-containing prot | 0.993 | 0.962 | 0.678 | 0.0 | |
| 15242557 | 819 | pentatricopeptide repeat-containing prot | 0.993 | 0.962 | 0.676 | 0.0 | |
| 356540307 | 804 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.915 | 0.673 | 0.0 | |
| 224056220 | 643 | predicted protein [Populus trichocarpa] | 0.778 | 0.959 | 0.798 | 0.0 | |
| 224103707 | 643 | predicted protein [Populus trichocarpa] | 0.778 | 0.959 | 0.777 | 0.0 | |
| 356574297 | 794 | PREDICTED: pentatricopeptide repeat-cont | 0.916 | 0.915 | 0.646 | 0.0 |
| >gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/835 (70%), Positives = 677/835 (81%), Gaps = 50/835 (5%)
Query: 1 MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNN 60
MA+ ++LPLL+ P P KP F TQ+ HNL PS ++ + S +PL+Q++ N+
Sbjct: 1 MAEKVALPLLISNPLPTKPQFPTQS--HNLQQPS--SPISSSNTSSPPFTPLIQNMLINH 56
Query: 61 SSSQPIHQP---------RSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVK 111
QP H P R RTR+ K+RD NRGKPW+ HRLS GQQVL SLID F+
Sbjct: 57 HKIQP-HSPKFINPNVSIRPRTRISKARDPNRGKPWASHRLSTLGQQVLDSLIDPCFEGS 115
Query: 112 DIDSVLSQLLDQNPGEK-------SEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCS 164
++D VLSQL + E+ L D+LGI+KGLGF+KK D+A+ VF W R
Sbjct: 116 ELDKVLSQLFEYYHKEELSLSSGTWNSLSMDVLGIIKGLGFYKKCDMAMSVFSWVRE--R 173
Query: 165 KDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224
+D VL SV+AV+I+MLGKEGKVS A+S+L+ L KDGFD+DVYAYTSLIT YASNGRY
Sbjct: 174 EDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRY 233
Query: 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT 284
R+AV+VFKKMEEEGCKPTLITYNVILNVYGKMGMPW+KI LV GMKS+GV PD YT+NT
Sbjct: 234 RDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNT 293
Query: 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING 344
LISCCRRGSL+EEAA VFEEMKL+GFSPDKVT+N LLDVYGK RRPKEAM+VL+EM+ +G
Sbjct: 294 LISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSG 353
Query: 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM 404
PSIVTYNSLISAYARDGLL EAMELK QMVE GI PDVFTYTTLLSGFEKAG DE AM
Sbjct: 354 FSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAM 413
Query: 405 KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464
++F EMR+AGCKPNICTFNALIKMHGNRG F EMMKVF+EI CNC PDIVTWNTLLAVF
Sbjct: 414 RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVF 473
Query: 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL 524
GQNGMDSEVSGVFKEMKRAGF+PERDTFNTLISAYSRCGSF QAM++YKRMLEAGVTPDL
Sbjct: 474 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDL 533
Query: 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEE 584
S+YNAVLAALARGG+WEQSEK+FAEMK GRCKPNELTY SLLHAYAN +EI++M L+EE
Sbjct: 534 SSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEE 593
Query: 585 IYS--------------------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQM 618
IYS E AF ELKKKG SPD+ TLNAMI+IYGRRQM
Sbjct: 594 IYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQM 652
Query: 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 678
VAK NEIL+FMN+SGF+PSL TYN+LMYM+SRSENF R+E+VL+EILAKG+KPD+ISYNT
Sbjct: 653 VAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNT 712
Query: 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738
VIFAYCRNGRMK+ASRIFS M+ GLVPDVITYNTFVASYAADSLF +A+ VVRYMIK G
Sbjct: 713 VIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHG 772
Query: 739 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 793
CK NQNTYNSIVDGYCK ++R +AI FV++L++LDPHVTKE E +LS+RIAKKW+
Sbjct: 773 CKRNQNTYNSIVDGYCKHSRRADAIMFVSSLNQLDPHVTKEEELRLSERIAKKWS 827
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/747 (74%), Positives = 641/747 (85%), Gaps = 31/747 (4%)
Query: 76 GKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGEKS---EDL 132
GKS+D+NRGKPWSH RLS GQ++LQ+LID +F++ ID +L +L +Q PGE E L
Sbjct: 67 GKSQDANRGKPWSHGRLSPPGQRILQTLIDPTFNLAQIDELLLELFEQQPGESDFSVESL 126
Query: 133 GADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVA 192
D+LGIVKGLGF+KK D AL VFEW R+ K+ L+L GS+IAV+IS+LGK G+VS A
Sbjct: 127 SLDVLGIVKGLGFYKKCDTALRVFEWVRN--RKESELLLNGSIIAVIISILGKGGRVSAA 184
Query: 193 ASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252
ASLLH L KDGFD+DVYAYTS+IT + SNGRYREAVMVFKKMEE GCKPTLITYNVILNV
Sbjct: 185 ASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNV 244
Query: 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP 312
YGKMGMPWNK++ LV+ MKSAG+ PDSYT+NTLISCCRRG+L+EEAAGV +EMKLAGFSP
Sbjct: 245 YGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSP 304
Query: 313 DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK 372
DKVTYNALLDVYGK RR KEAM+VL+EM+ NGC PSIVTYNSLISAYARDGLLE+A+ELK
Sbjct: 305 DKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELK 364
Query: 373 TQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432
QMVE GI PDVFTYTTLLSGFEKAGKD++A+++FEEMR+ GCKPNICTFNALIKMHGNR
Sbjct: 365 NQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNR 424
Query: 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTF 492
G F EMMKVF++I C PDIVTWNTLL+VFGQNGMDSEVSGVFKEMKRAGF+PERDTF
Sbjct: 425 GKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 484
Query: 493 NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552
NTLIS+YSRCGSFDQAM++YKRMLEAGV PDLS+YNAVLAALARGG+W+QSEK+ AEMK
Sbjct: 485 NTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKD 544
Query: 553 GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS------------------------- 587
GRCKPNELTY SLLHAYANG+EI++M AL+EEIYS
Sbjct: 545 GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLME 604
Query: 588 -ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 646
ERAFLEL+++GFSPDI TLNAM+SIYGRRQMVAK NEIL M GFTPSLTTYN+LMY
Sbjct: 605 TERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMY 664
Query: 647 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 706
MYSRS NF R+E++LREILAKGI+PDIISYNTVI+AYCRNGRM++ASR+ SEMR+SG P
Sbjct: 665 MYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAP 724
Query: 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 766
D+ITYNTF+ASYAADS+FVEA+DVV YMIK GCKPNQ+TYNSIVD YCKLN+R EA FV
Sbjct: 725 DIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFV 784
Query: 767 NNLSKLDPHVTKELECKLSDRIAKKWT 793
NNL KLDPH++ + EC+LS+R+AKKW+
Sbjct: 785 NNLRKLDPHISMDEECRLSERMAKKWS 811
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1166 bits (3016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/787 (71%), Positives = 662/787 (84%), Gaps = 39/787 (4%)
Query: 43 SASPTTISPLLQDLYNN---NSSSQPIHQP----RSRTRLGKSRDSNRGKPWSHHRLSAK 95
S++ + ++PLLQDL + +SS+QP H P R+RTR+G+S D NRGKPWSHHRLS +
Sbjct: 48 SSASSPLAPLLQDLLPHQHPSSSTQP-HLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQ 106
Query: 96 GQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGE---KSEDLGADLLGIVKGLGFHKKTDLA 152
GQ++L SL++ FD +D +L QL + + S+ + D+LGI+KGL F+KK +LA
Sbjct: 107 GQRILDSLLNPEFDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELA 166
Query: 153 LDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYT 212
L VF + R+ +D +L SV+AV+IS+LGKEG+ S AASLLH L DG ID+YAYT
Sbjct: 167 LCVFYFVRN--REDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYT 224
Query: 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS 272
SLIT YASNGRYREAVMVFKK+EEEGC+PTLITYNVILNVYGKMGMPW+KI LV+ MKS
Sbjct: 225 SLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKS 284
Query: 273 AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332
+GV PD YT+NTLIS CRRGSL+EEAA VFEEMK AGFSPDKVTYNALLDVYGK RRP+E
Sbjct: 285 SGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344
Query: 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLS 392
AM+VL+EM+ +G PSIVTYNSLISAYARDGLL+EAMELK+QMV+ GI PDVFTYTTLLS
Sbjct: 345 AMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLS 404
Query: 393 GFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP 452
GFEK GKD+ AMKVFEEMR AGC+PNICTFNALIKMHGNRGNFVEMMKVF+EI C C P
Sbjct: 405 GFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVP 464
Query: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIY 512
DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF+PERDTFNTLISAYSRCG FDQAM+IY
Sbjct: 465 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 513 KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572
+RML+AGVTPDLSTYNAVLAALARGG+WEQSEK+ AEMK GRCKPNELTY SLLHAYANG
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 573 REIDQMLALSEEIYS--------------------------ERAFLELKKKGFSPDIPTL 606
+E+++M AL+EEIYS ERAFLEL+++GFSPDI TL
Sbjct: 585 KEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTL 644
Query: 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666
NAM+SIYGRR+MV+KTNEIL+F+ DSGFTPSLTTYN+LMYMYSR+E+F ++ED+LREI+A
Sbjct: 645 NAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIA 704
Query: 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 726
KG+KPDIIS+NTVIFAYCRNGRMKEASRIF+EM+D GL PDVITYNTF+ASYA+DS+F+E
Sbjct: 705 KGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIE 764
Query: 727 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 786
A+DVV+YMIK GCKPNQNTYNS++D +CKLN+R EA +F++NL LDP VTK+ E +L +
Sbjct: 765 AIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEERRLLE 824
Query: 787 RIAKKWT 793
R+ KKW+
Sbjct: 825 RLNKKWS 831
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/787 (71%), Positives = 661/787 (83%), Gaps = 39/787 (4%)
Query: 43 SASPTTISPLLQDLYNN---NSSSQPIHQP----RSRTRLGKSRDSNRGKPWSHHRLSAK 95
S++ + ++PLLQDL + +SS+QP H P R+RTR+G+S D NRGKPWSHHRLS +
Sbjct: 48 SSASSPLAPLLQDLLPHQHPSSSTQP-HLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQ 106
Query: 96 GQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGE---KSEDLGADLLGIVKGLGFHKKTDLA 152
GQ++L SL++ FD +D +L QL + + S+ + D+LGI+KGL F+KK +LA
Sbjct: 107 GQRILDSLLNPEFDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELA 166
Query: 153 LDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYT 212
L VF + R+ +D +L SV+AV+IS+LGKEG+ S AASLLH L DG ID+YAYT
Sbjct: 167 LCVFYFVRN--REDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYT 224
Query: 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS 272
SLIT YASNGRYREAVMVFKK+EEEGC+PTLITYNVILNVYGKMGMPW+KI LV+ MKS
Sbjct: 225 SLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKS 284
Query: 273 AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332
+GV PD YT+NTLIS CRRGSL+EEAA VFEEMK AGFSPDKVTYNALLDVYGK RRP+E
Sbjct: 285 SGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344
Query: 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLS 392
AM+VL+EM+ +G PSIVTYNSLISAYARDGLL+EAMELK+QMV+ GI PDVFTYTTLLS
Sbjct: 345 AMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLS 404
Query: 393 GFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP 452
GFEK GKD+ AMKVFEEMR AGC+PNICTFNALIKMHGNRGNFVEMMKVF+EI C C P
Sbjct: 405 GFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVP 464
Query: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIY 512
DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF+PERDTFNTLISAYSRCG FDQAM+IY
Sbjct: 465 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 513 KRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572
+RML+AGVTPDLSTYNAVLAALARGG+WEQSEK+ AEMK GRCKPNELTY SLLHAYANG
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 573 REIDQMLALSEEIYS--------------------------ERAFLELKKKGFSPDIPTL 606
+E+++M AL+EEIYS ERAFLEL+++GFSPDI TL
Sbjct: 585 KEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTL 644
Query: 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666
NAM+SIYGRR+MV+KTNEIL+F+ DSGFTPSLTTYN+LMYMYSR+E+F ++ED+LREI+A
Sbjct: 645 NAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIA 704
Query: 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 726
KG+KPDIIS+NTVIFAYCRNGRMKEASRIF+EM+D GL PDVITYNTF+ASYA+DS+F+E
Sbjct: 705 KGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIE 764
Query: 727 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 786
A+DVV+YMIK CKPNQNTYNS++D +CKLN+R EA +F++NL LDP VTK+ E +L +
Sbjct: 765 AIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVTKDEERRLLE 824
Query: 787 RIAKKWT 793
R+ KKW+
Sbjct: 825 RLNKKWS 831
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/822 (67%), Positives = 656/822 (79%), Gaps = 34/822 (4%)
Query: 1 MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNN 60
MA L+LPLLLP P +KP Q NHH P ++P P L+ N
Sbjct: 1 MADKLALPLLLPCTPSSKPYSHDQ-NHHLSRTPFLTTSLSSPPPPPVEPLLHDVFLHQNP 59
Query: 61 SSSQPI----HQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSV 116
+S QPI + R+RTR+GKSRD N GKPWS+H LS +GQQVL+SLI+ +FD +D++
Sbjct: 60 NSRQPITSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDAL 119
Query: 117 LSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVI 176
LS+L + +K E ++LL +KGLGFHKK DLAL F+WF KD +L SVI
Sbjct: 120 LSELFEPFK-DKPESTSSELLAFLKGLGFHKKFDLALCAFDWFMK--QKDYQSMLDNSVI 176
Query: 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEE 236
A++ISMLGKEG+VS AA+L +GL +DGF +DVY+YTSLI+ +A++GRYREAV VFKKMEE
Sbjct: 177 AIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 237 EGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE 296
EGCKPTLITYNVILNV+GKMG PWNKI +LVE MKS G+ PD+YT+NTLI+CC+RGSLH+
Sbjct: 237 EGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356
EAA VFEEMK AGFS DKVTYNALLDVYGK RPKEAM+VL EM++NG PSIVTYNSLI
Sbjct: 297 EAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLI 356
Query: 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416
SAYARDG+L+EAMELK QM E G PDVFTYTTLLSGFE+AGK ESAM +FEEMR+AGCK
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCK 416
Query: 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476
PNICTFNA IKM+GNRG FV+MMK+FDEIN C PDIVTWNTLLAVFGQNGMDSEVSGV
Sbjct: 417 PNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536
FKEMKRAGF+PER+TFNTLISAYSRCGSF+QAM++Y+RML+AGVTPDLSTYN VLAALAR
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS--------- 587
GGMWEQSEK+ AEM+ GRCKPNELTY SLLHAYANG+EI M +L+EE+YS
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 588 -----------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630
ERAF ELK++GFSPDI TLN+M+SIYGRRQMV K NE+L +M
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMK 656
Query: 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690
+ GFTPS+ TYN+LMYM+SRS +F ++E++LREILAKGIKPDIISYNTVI+AYCRN RM+
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750
+ASRIFSEMRDSG+VPDVITYNTF+ SYAADS+F EA+ VVRYMIK GC+PNQNTYNSIV
Sbjct: 717 DASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 751 DGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 792
DGYCKLN++ EA FV +L LDPH K + +L +RI KKW
Sbjct: 777 DGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERIVKKW 818
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana] gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/822 (67%), Positives = 654/822 (79%), Gaps = 34/822 (4%)
Query: 1 MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQQTTPSASPTTISPLLQDLYNNN 60
MA L+LPLLLP P +KP Q NHH P ++P P L+ N
Sbjct: 1 MADKLALPLLLPCTPSSKPYSHDQ-NHHISRTPFLTTSLSSPPPPPVEPLLHDVFLHQNP 59
Query: 61 SSSQPIH----QPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSV 116
+S QPI + R+RTR+GKSRD N GKPWS+H LS +GQQVL+SLI+ +FD +DSV
Sbjct: 60 NSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSV 119
Query: 117 LSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVI 176
LS+L + +K E ++LL +KGLGFHKK DLAL F+WF KD +L SV+
Sbjct: 120 LSELFEPFK-DKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMK--QKDYQSMLDNSVV 176
Query: 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEE 236
A++ISMLGKEG+VS AA++ +GL +DGF +DVY+YTSLI+ +A++GRYREAV VFKKMEE
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 237 EGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE 296
+GCKPTLITYNVILNV+GKMG PWNKI +LVE MKS G+ PD+YT+NTLI+CC+RGSLH+
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356
EAA VFEEMK AGFS DKVTYNALLDVYGK RPKEAM+VL EM +NG PSIVTYNSLI
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416
SAYARDG+L+EAMELK QM E G PDVFTYTTLLSGFE+AGK ESAM +FEEMR+AGCK
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476
PNICTFNA IKM+GNRG F EMMK+FDEIN C PDIVTWNTLLAVFGQNGMDSEVSGV
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536
FKEMKRAGF+PER+TFNTLISAYSRCGSF+QAM++Y+RML+AGVTPDLSTYN VLAALAR
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS--------- 587
GGMWEQSEK+ AEM+ GRCKPNELTY SLLHAYANG+EI M +L+EE+YS
Sbjct: 537 GGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 588 -----------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630
ERAF ELK++GFSPDI TLN+M+SIYGRRQMVAK N +L +M
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656
Query: 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690
+ GFTPS+ TYN+LMYM+SRS +F ++E++LREILAKGIKPDIISYNTVI+AYCRN RM+
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750
+ASRIFSEMR+SG+VPDVITYNTF+ SYAADS+F EA+ VVRYMIK GC+PNQNTYNSIV
Sbjct: 717 DASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776
Query: 751 DGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKW 792
DGYCKLN++ EA FV +L LDPH K + +L +RI KKW
Sbjct: 777 DGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERIVKKW 818
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/793 (67%), Positives = 626/793 (78%), Gaps = 57/793 (7%)
Query: 32 PPSPPQQQTTPSASPTTISPLLQDLYNNNSSSQPIHQPRSRTRLGKSRDSNRGKPWSHHR 91
PP PP I+ L+ DL N+NSSS R R LGKS D NRGKPWS HR
Sbjct: 38 PPIPP------------INTLIHDL-NSNSSS------RHRISLGKSLDPNRGKPWSPHR 78
Query: 92 LSAKGQQVLQSLIDDSFDVKDIDSVLSQ-----LLDQNPGEKSEDLGADLLGIVKGLGFH 146
LS GQQ+L +L + D++ L LL +P S D+LGI+K LGF
Sbjct: 79 LSPTGQQILHTLSHSNSLHLDLELDLDHVLRPLLLSDHPHPAS-----DILGIIKALGFS 133
Query: 147 KKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI 206
K DLAL VF W R+ S + S I V+I +LGK G+VS AASLL L DG I
Sbjct: 134 NKCDLALAVFHWVRTNNSNTN--LFSSSAIPVIIKILGKAGRVSSAASLLLALQNDGVHI 191
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266
DVYAYT LI Y+S+GRYR+AV +F KM+++GC PTLITYNV+LNVYGKMGMPW+ + AL
Sbjct: 192 DVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTAL 251
Query: 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326
VE M+S GV PD YT+NTLISCCRRGSL+EEA +F++MKL GF+PDKVTYNALLDV+GK
Sbjct: 252 VEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGK 311
Query: 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFT 386
RRP+EAM+VL+EM+ NG P+ VTYNSLISAYA+ GLLEEA++LKTQMV GI PDVFT
Sbjct: 312 SRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFT 371
Query: 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446
YTTLLSGFEKAGKD+ A++VF EMR+ GCKPNICTFNALIKMHGNRG F EMMKVFD+I
Sbjct: 372 YTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIK 431
Query: 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506
CNC PDIVTWNTLLAVFGQNGMDS+VSG+FKEMKRAGF+ ERDTFNTLISAYSRCGSFD
Sbjct: 432 LCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFD 491
Query: 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL 566
QAM++YK MLEAGV PDLSTYNAVLAALARGG+WEQSEK+ AEM+ GRCKPNEL+YSSLL
Sbjct: 492 QAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLL 551
Query: 567 HAYANGREIDQMLALSEEIYS--------------------------ERAFLELKKKGFS 600
HAYANG+EI++M A +EEIYS ERAFLEL+++G S
Sbjct: 552 HAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGIS 611
Query: 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 660
PDI TLNAM+SIYGR+QMVAK +EIL+FM+++ FTPSLTTYN+LMYMYSRSENF ++E++
Sbjct: 612 PDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEI 671
Query: 661 LREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 720
LRE+L KG+KPD ISYNTVI+AYCRNGRMKEASRIFSEM+DS LVPDV+TYNTF+A+YAA
Sbjct: 672 LREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAA 731
Query: 721 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780
DS+F EA+DVVRYMIKQGCKP+QNTYNSIVD YCKL+QR+EA +FV NLS LDPHV+KE
Sbjct: 732 DSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNLDPHVSKEE 791
Query: 781 ECKLSDRIAKKWT 793
E +L +RIAK W+
Sbjct: 792 ESRLLERIAKMWS 804
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa] gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/644 (79%), Positives = 566/644 (87%), Gaps = 27/644 (4%)
Query: 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKME 235
+AV+ISMLGKEGKVSVAASLL+ LHKDGF +DVYAYTSLIT SNGRYREAVMVFKKME
Sbjct: 1 VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60
Query: 236 EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295
EEGCKPTLITYNVILNVYGKMGMPWNKI L EGMK+AGV PD YT+NTLI+CCRRGSLH
Sbjct: 61 EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLH 120
Query: 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355
EEAA VF++MK GF PDKVTYNALLDVYGK RR KEAM+VLREM++NGC PSIVTYNSL
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSL 180
Query: 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415
ISAYARDGLL+EAMELK QMVE GI DVFTYTTLLSGF +AGKDESAM+VF EMR+AGC
Sbjct: 181 ISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGC 240
Query: 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSG 475
KPNICTFNALIKMHGNRG F EMMKVF+EI C PDIVTWNTLLAVFGQNGMDSEVSG
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSG 300
Query: 476 VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535
VFKEMKRAGF+PERDT+NTLISAYSRCGSFDQAM IYKRMLEAG+TPDLSTYNAVLAALA
Sbjct: 301 VFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALA 360
Query: 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS-------- 587
RGG+WEQSEKIFAEMK GRCKPNELTY SLLHAYANG+EI +MLAL+EEI S
Sbjct: 361 RGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAV 420
Query: 588 ------------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 629
E AFLELK+KGFSPD+ TLNAM+SIYGRRQM KTNEIL+FM
Sbjct: 421 LLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFM 480
Query: 630 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689
N+SGFTPSL TYN+LMYM+SRSENF R+E+VL+EILAKGIKPD ISYNTVIFAYCRNGRM
Sbjct: 481 NESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRM 540
Query: 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749
KEASRIFSEMR+SGLVPDVITYNTFVASYAADS+F +A+DVVRYMIK GCKPNQNTYNS+
Sbjct: 541 KEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSV 600
Query: 750 VDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 793
VDGYCK N R +AI F+++L +LDPH+++E +C+LS+R+ KW+
Sbjct: 601 VDGYCKHNHRDDAIMFISSLHELDPHISREEKCRLSERLT-KWS 643
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa] gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/644 (77%), Positives = 563/644 (87%), Gaps = 27/644 (4%)
Query: 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKME 235
+AV+I+MLGKEGKVSVAASLL+ LHKDGF+ DVYAYTSLIT SNGRYREAVMVFKKME
Sbjct: 1 VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60
Query: 236 EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295
EEGCKPTLITYNVILNVYGKMGMPWNKI L EGMK+AG+ PD YT+NTLI+CCRRGSL+
Sbjct: 61 EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLY 120
Query: 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355
EEAA VFE+MK GF PDKVTYN LLDVYGK RR KEA++VLREM++NGC PSIVTYNSL
Sbjct: 121 EEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSL 180
Query: 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415
ISAYARDGLLEEAMELK QMVE GI DVFTYT +LSGF + GKDESAM+VFEEMR+AGC
Sbjct: 181 ISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGC 240
Query: 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSG 475
KPNICTFNALIKMHGNRG F EMMKVF+EI C C PDIVTWNTLLAVFGQNGMDSEVSG
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSG 300
Query: 476 VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535
VFKEMKR GF+PERDT+NTLISAYSRCGSFDQAM++YKRML+ G+TPDLSTYNAVLAALA
Sbjct: 301 VFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALA 360
Query: 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS-------- 587
RGG+WEQSEKI AEM+ G CKPNELT+ SLLHAYANG+EI +MLAL+EEI S
Sbjct: 361 RGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEICSGVIEPHAV 420
Query: 588 ------------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 629
ERAFLELK+KGFSPD+ TLNAMI+IYGRRQMV KTNEIL+FM
Sbjct: 421 LLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFM 480
Query: 630 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689
+SGFTPSL TYN+LMYM+S+SENF R+E+VL+EILAKGIKPDIISYNTVIFAYCRNGRM
Sbjct: 481 KESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRM 540
Query: 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749
KEAS IFSEMR+SGL+PDVITYNTFVASYAADS+F EA+DVV YMIK GCKPNQNTYNS+
Sbjct: 541 KEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSV 600
Query: 750 VDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 793
+DGYCKLN+R +AI F+++L +LDPH+++E EC+L +R+ KW+
Sbjct: 601 IDGYCKLNRRDDAIKFISSLHELDPHISREDECRLLERLT-KWS 643
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/770 (64%), Positives = 593/770 (77%), Gaps = 43/770 (5%)
Query: 52 LLQDLY-NNNSSSQP-IHQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFD 109
LLQDL+ N N SS P +H S R P S HRLS + ++LQ+LI SFD
Sbjct: 36 LLQDLFLNQNHSSTPHLHLSPSTHR----------TPRSPHRLSPQAHRILQTLIHPSFD 85
Query: 110 VKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNL 169
+L L DQ S L D+LGI+KGLGF+ K DLAL +F++ R+ D
Sbjct: 86 SNRFHEILPLLFDQ---PSSSSLSWDILGIIKGLGFNNKFDLALSLFDFIRT--RNDRVS 140
Query: 170 VLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVM 229
+L GSVIAV++S+LGK G+VS AASLLH L DGF++DVY YTSLIT YA+N +YR+A+
Sbjct: 141 LLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALK 200
Query: 230 VFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCC 289
VF KM+E GC+PTLITYN ILNVYGKMGMPW KI+ALV+ MK G+ PD T+NTLISCC
Sbjct: 201 VFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCC 260
Query: 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI 349
R GSL+EEA +FEE+K+AGF PD VTYNALLDVYGK RRPKEAM+VL++M+ N PS+
Sbjct: 261 RAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSV 320
Query: 350 VTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEE 409
VTYNSL+SAY R GLLE+A+ LK +MV+ GI PDV+TYTTLLSGF AGK+E AM+VFEE
Sbjct: 321 VTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEE 380
Query: 410 MRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM 469
MR GCKPNICTFNALIKM+G+RG F EM+KVF EI C C PDIVTWNTLLAVFGQNGM
Sbjct: 381 MRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGM 440
Query: 470 DSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA 529
DSEVSGVF+EMKR+ F PERDTFNTLISAY RCGSFDQAM+ YKRMLEAGV+PDLSTYNA
Sbjct: 441 DSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNA 500
Query: 530 VLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS-- 587
VLA LARGG+WEQSEK+ AEMK G CKPNE+TYSSLLHAYANGRE+++M AL+EEIYS
Sbjct: 501 VLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGT 560
Query: 588 ------------------------ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTN 623
ERAFLE +K+G SPD+ T NAM+SIYGR++MV K N
Sbjct: 561 IKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKAN 620
Query: 624 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 683
EIL+FM +SG T SLT+YN+LMYMYSR+ENF ++E + REIL KGI+PD+ISYN VI+AY
Sbjct: 621 EILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAY 680
Query: 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 743
CRN M EA RI EM+ VPDV+TYNTF+A+YAADS+FVEA+DV+RYMIKQGCKPN
Sbjct: 681 CRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNH 740
Query: 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAKKWT 793
NTYNSIVD YCKL R EA +FV NL LDP ++++ + +L +RIAKKW+
Sbjct: 741 NTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISEDEKSRLLERIAKKWS 790
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 793 | ||||||
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.892 | 0.864 | 0.600 | 2.6e-230 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.883 | 0.852 | 0.363 | 1.3e-121 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.612 | 0.563 | 0.290 | 9.6e-73 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.586 | 0.506 | 0.310 | 1.8e-70 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.767 | 0.699 | 0.263 | 3e-62 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.672 | 0.582 | 0.285 | 4.6e-62 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.696 | 0.723 | 0.281 | 2.1e-61 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.610 | 0.663 | 0.303 | 3.4e-61 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.597 | 0.792 | 0.287 | 3.5e-59 | |
| TAIR|locus:2034528 | 840 | AT1G31840 [Arabidopsis thalian | 0.683 | 0.645 | 0.290 | 7.3e-59 |
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2222 (787.2 bits), Expect = 2.6e-230, P = 2.6e-230
Identities = 436/726 (60%), Positives = 544/726 (74%)
Query: 52 LLQD--LYNNNSSSQPIHQP----RSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLID 105
LL D L+ N +S QPI R+RTR+GKSRD N GKPWS+H LS +GQQVL+SLI+
Sbjct: 49 LLHDVFLHQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIE 108
Query: 106 DSFDVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSK 165
+FD +DSVLS+L + +K E ++LL +KGLGFHKK DLAL F+WF K
Sbjct: 109 PNFDSGQLDSVLSELFEPFK-DKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMK--QK 165
Query: 166 DGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYR 225
D +L SV+A++ISMLGKEG+VS AA++ +GL +DGF +DVY+YTSLI+ +A++GRYR
Sbjct: 166 DYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYR 225
Query: 226 EAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL 285
EAV VFKKMEE+GCKPTLITYNVILNV+GKMG PWNKI +LVE MKS G+ PD+YT+NTL
Sbjct: 226 EAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTL 285
Query: 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC 345
I+CC+RGSLH+EAA VFEEMK AGFS DKVTYNALLDVYGK RPKEAM+VL EM +NG
Sbjct: 286 ITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGF 345
Query: 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMK 405
PSIVTYNSLISAYARDG+L+EAMELK QM E G PDVFTYTTLLSGFE+AGK ESAM
Sbjct: 346 SPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMS 405
Query: 406 VFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG 465
+FEEMR+AGCKPNICTFNA IKM+GNRG F EMMK+FDEIN C PDIVTWNTLLAVFG
Sbjct: 406 IFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFG 465
Query: 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525
QNGMDSEVSGVFKEMKRAGF+PER+TFNTLISAYSRCGSF+QAM++Y+RML+AGVTPDLS
Sbjct: 466 QNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLS 525
Query: 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585
TYN VLAALARGGMWEQSEK+ AEM+ GRCKPNELTY SLLHAYANG+EI M +L+EE+
Sbjct: 526 TYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585
Query: 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 645
YS +E P L ++ + + ++ + + + GF+P +TT N+++
Sbjct: 586 YS--GVIE-------PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 646 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 705
+Y R + A+A VL + +G P + +YN++++ + R+ ++ I E+ G+
Sbjct: 637 SIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIK 696
Query: 706 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765
PD+I+YNT + +Y ++ +A + M G P+ TYN+ + Y + EAI
Sbjct: 697 PDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGV 756
Query: 766 VNNLSK 771
V + K
Sbjct: 757 VRYMIK 762
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
Identities = 262/720 (36%), Positives = 401/720 (55%)
Query: 61 SSSQPIHQPRSRTR---LGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVL 117
SS P H + R L S DS+ KP + + L+ L +V ++S++
Sbjct: 59 SSPPPRHSNSAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKK--EVVLVNSIV 116
Query: 118 SQLLDQNP----GEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRG 173
Q L KSE L DL+ +VKGL + A+ +FEW S G L L
Sbjct: 117 EQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWL-VLSSNSGALKLDH 175
Query: 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKK 233
VI + + +LG+E + SVAA LL + + +DV AYT+++ Y+ G+Y +A+ +F++
Sbjct: 176 QVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFER 235
Query: 234 MEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293
M+E G PTL+TYNVIL+V+GKMG W KI+ +++ M+S G+K D +T +T++S C R
Sbjct: 236 MKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREG 295
Query: 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYN 353
L EA F E+K G+ P VTYNALL V+GK EA+ VL+EM+ N C VTYN
Sbjct: 296 LLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYN 355
Query: 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413
L++AY R G +EA + M + G+ P+ TYTT++ + KAGK++ A+K+F M+ A
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415
Query: 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473
GC PN CT+NA++ + G + EM+K+ ++ C P+ TWNT+LA+ G GMD V
Sbjct: 416 GCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475
Query: 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533
+ VF+EMK GF P+RDTFNTLISAY RCGS A +Y M AG ++TYNA+L A
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Query: 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLE 593
LAR G W E + ++MK KP E +YS +L YA G L + ER
Sbjct: 536 LARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKG---GNYLGI------ERIENR 586
Query: 594 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN 653
+K+ P L ++ + + +A + G+ P + +N+++ +++R+
Sbjct: 587 IKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNM 646
Query: 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT 713
+ +AE +L I G+ PD+++YN+++ Y R G +A I + S L PD+++YNT
Sbjct: 647 YDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNT 706
Query: 714 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773
+ + L EA+ ++ M ++G +P TYN+ V GY + E + ++K D
Sbjct: 707 VIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKND 766
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 144/495 (29%), Positives = 272/495 (54%)
Query: 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKM 234
+ ++IS+LG+EG + + + G V++YT+LI Y NGRY ++ + +M
Sbjct: 143 IYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRM 202
Query: 235 EEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294
+ E P+++TYN ++N + G+ W ++ L M+ G++PD T+NTL+S C L
Sbjct: 203 KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGL 262
Query: 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS 354
+EA VF M G PD TY+ L++ +GK RR ++ +L EM G LP I +YN
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414
L+ AYA+ G ++EAM + QM G TP+ TY+ LL+ F ++G+ + ++F EM+S+
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474
P+ T+N LI++ G G F E++ +F ++ + N +PD+ T+ ++ G+ G+ +
Sbjct: 383 TDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDAR 442
Query: 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL 534
+ + M +P + +I A+ + +++A+ + M E G P + T++++L +
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSF 502
Query: 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLEL 594
ARGG+ ++SE I + + N T+++ + AY G + ++ + + ++++
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV---------KTYVDM 553
Query: 595 KKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 654
+K PD TL A++S+Y ++V + E M S PS+ Y ++ +Y ++E +
Sbjct: 554 EKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERW 613
Query: 655 ARAEDVLREILAKGI 669
++L E+L+ +
Sbjct: 614 DDVNELLEEMLSNRV 628
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 147/474 (31%), Positives = 257/474 (54%)
Query: 70 RSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDVKDIDSVLSQLLDQNPGEKS 129
R TR R K R S+ + LQ+ ID S D + S++ + G
Sbjct: 139 RRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSD- 197
Query: 130 EDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKV 189
D I++ LG + D A+ +E+ ++ +G + + +IS LG+ GKV
Sbjct: 198 -----DCTYIIRELGNRNECDKAVGFYEF---AVKRERRKNEQGKLASAMISTLGRYGKV 249
Query: 190 SVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249
++A + G+ VYA+++LI+ Y +G + EA+ VF M+E G +P L+TYN +
Sbjct: 250 TIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV 309
Query: 250 LNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG 309
++ GK GM + ++ + M+ GV+PD TFN+L++ C RG L E A +F+EM
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 369
Query: 310 FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAM 369
D +YN LLD K + A ++L +M + +P++V+Y+++I +A+ G +EA+
Sbjct: 370 IEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEAL 429
Query: 370 ELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMH 429
L +M +GI D +Y TLLS + K G+ E A+ + EM S G K ++ T+NAL+ +
Sbjct: 430 NLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGY 489
Query: 430 GNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER 489
G +G + E+ KVF E+ + + P+++T++TL+ + + G+ E +F+E K AG +
Sbjct: 490 GKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADV 549
Query: 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543
++ LI A + G A+S+ M + G++P++ TYN+++ A R ++S
Sbjct: 550 VLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 165/627 (26%), Positives = 300/627 (47%)
Query: 139 IVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHG 198
+++G + D AL + + +S S D ++VL V I GK GKV +A H
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSS-SLDADIVLYN----VCIDSFGKVGKVDMAWKFFHE 263
Query: 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258
+ +G D YTS+I R EAV +F+ +E+ P YN ++ YG G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Query: 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318
+++ +L+E ++ G P +N +++C R+ +EA VFEEMK +P+ TYN
Sbjct: 324 -FDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYN 381
Query: 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378
L+D+ + + A ++ M+ G P++ T N ++ + L+EA + +M
Sbjct: 382 ILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYK 441
Query: 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438
TPD T+ +L+ G K G+ + A KV+E+M + C+ N + +LIK N G +
Sbjct: 442 VCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDG 501
Query: 439 MKVF-DEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497
K++ D IN+ NC PD+ NT + + G + +F+E+K F+P+ +++ LI
Sbjct: 502 HKIYKDMINQ-NCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIH 560
Query: 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP 557
+ G ++ ++ M E G D YN V+ + G ++ ++ EMK +P
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ 617
+TY S++ A +D+ L EE S+R +EL ++ +++I +G+
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR--IEL-------NVVIYSSLIDGFGKVG 671
Query: 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYN 677
+ + IL + G TP+L T+N+L+ ++E A + + P+ ++Y
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737
+I C+ + +A + EM+ G+ P I+Y T ++ A EA +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKAN 791
Query: 738 GCKPNQNTYNSIVDGYCKLNQRYEAIT 764
G P+ YN++++G N+ +A +
Sbjct: 792 GGVPDSACYNAMIEGLSNGNRAMDAFS 818
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 4.6e-62, P = 4.6e-62
Identities = 157/550 (28%), Positives = 278/550 (50%)
Query: 204 FDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 263
+ + + Y +L+ + A G E V+ +M E+ P + TYN ++N Y K+G +
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNV-EEA 237
Query: 264 MALVEGMKSAGVKPDSYTFNTLI-SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322
V + AG+ PD +T+ +LI C+R L + A VF EM L G ++V Y L
Sbjct: 238 NQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL-DSAFKVFNEMPLKGCRRNEVAYTHL-- 294
Query: 323 VYGKC--RRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI 380
++G C RR EAM + +MK + C P++ TY LI + EA+ L +M E GI
Sbjct: 295 IHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGI 354
Query: 381 TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440
P++ TYT L+ K E A ++ +M G PN+ T+NALI + RG + +
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414
Query: 441 VFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYS 500
V + + P+ T+N L+ + ++ + + GV +M +P+ T+N+LI
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQC 473
Query: 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL 560
R G+FD A + M + G+ PD TY +++ +L + E++ +F ++ PN +
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV 533
Query: 561 TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 620
Y++L+ Y ++D+ + E++ S+ P+ T NA+I +
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCL---------PNSLTFNALIHGLCADGKLK 584
Query: 621 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680
+ + M G P+++T L++ + +F A +++L+ G KPD +Y T I
Sbjct: 585 EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFI 644
Query: 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 740
YCR GR+ +A + ++MR++G+ PD+ TY++ + Y A DV++ M GC+
Sbjct: 645 QTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCE 704
Query: 741 PNQNTYNSIV 750
P+Q+T+ S++
Sbjct: 705 PSQHTFLSLI 714
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 161/571 (28%), Positives = 275/571 (48%)
Query: 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI 244
K + A LL+ + G +++V AY +++ + E +F KM G L
Sbjct: 158 KTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLS 217
Query: 245 TYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS-CCRRGSLHEEAAGVFE 303
T+N +L V K G + L++ + GV P+ +T+N I C+RG L + A +
Sbjct: 218 TFNKLLRVLCKKG-DVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGEL-DGAVRMVG 275
Query: 304 EMKLAGFSPDKVTYNALLDVYGKCRRPK--EAMQVLREMKINGCLPSIVTYNSLISAYAR 361
+ G PD +TYN L +YG C+ K EA L +M G P TYN+LI+ Y +
Sbjct: 276 CLIEQGPKPDVITYNNL--IYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCK 333
Query: 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421
G+++ A + V G PD FTY +L+ G G+ A+ +F E G KPN+
Sbjct: 334 GGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393
Query: 422 FNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481
+N LIK N+G +E ++ +E+++ P++ T+N L+ + G S+ G+ K M
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMI 453
Query: 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541
G+ P+ TFN LI YS + A+ I ML+ GV PD+ TYN++L L + +E
Sbjct: 454 SKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFE 513
Query: 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP 601
+ + M C PN T++ LL + R++D+ L L EE +K K +P
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEE---------MKNKSVNP 564
Query: 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDV 660
D T +I + + + + M ++ S T TYN +++ ++ N AE +
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624
Query: 661 LREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 720
+E++ + + PD +Y ++ +C+ G + + EM ++G +P + T +
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684
Query: 721 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751
+ EA ++ M+++G P N+I D
Sbjct: 685 EDRVYEAAGIIHRMVQKGLVPE--AVNTICD 713
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 150/495 (30%), Positives = 252/495 (50%)
Query: 270 MKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329
++S G N LI R E A GV++E+ +G + T N +++ K +
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTT 389
++ L +++ G P IVTYN+LISAY+ GL+EEA EL M G +P V+TY T
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 390 LLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449
+++G K GK E A +VF EM +G P+ T+ +L+ +G+ VE KVF ++ +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 450 CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAM 509
PD+V +++++++F ++G + F +K AG IP+ + LI Y R G AM
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 510 SIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569
++ ML+ G D+ TYN +L L + M +++K+F EM P+ T + L+ +
Sbjct: 431 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490
Query: 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 629
+ + L F ++K+K D+ T N ++ +G+ + EI M
Sbjct: 491 CKLGNLQNAMEL---------FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM 541
Query: 630 NDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689
P+ +Y+ L+ + A A V E+++K IKP ++ N++I YCR+G
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNA 601
Query: 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPNQNTYN 747
+ +M G VPD I+YNT + + + +A +V+ M ++ G P+ TYN
Sbjct: 602 SDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYN 661
Query: 748 SIVDGYCKLNQRYEA 762
SI+ G+C+ NQ EA
Sbjct: 662 SILHGFCRQNQMKEA 676
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 140/487 (28%), Positives = 246/487 (50%)
Query: 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342
N L R G L EE E M G PD + L+ + + + ++A ++L ++
Sbjct: 107 NHLRQMVRTGEL-EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES 402
+G +P ++TYN +IS Y + G + A+ + +M ++PDV TY T+L +GK +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQ 222
Query: 403 AMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462
AM+V + M C P++ T+ LI+ MK+ DE+ C PD+VT+N L+
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282
Query: 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP 522
+ G E +M +G P T N ++ + G + A + ML G +P
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Query: 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALS 582
+ T+N ++ L R G+ ++ I +M C+PN L+Y+ LLH + +++D+ +
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE-- 400
Query: 583 EEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN 642
Y ER + +G PDI T N M++ + V EIL+ ++ G +P L TYN
Sbjct: 401 ---YLER----MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702
T++ +++ +A +L E+ AK +KPD I+Y++++ R G++ EA + F E
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 703 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA 762
G+ P+ +T+N+ + A+D + +MI +GCKPN+ +Y +++G EA
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 763 ITFVNNL 769
+ +N L
Sbjct: 574 LELLNEL 580
|
|
| TAIR|locus:2034528 AT1G31840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 162/558 (29%), Positives = 268/558 (48%)
Query: 188 KVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYN 247
++ VA+ LL + G +V + +LI + G A +FK ME+ G +P LI Y+
Sbjct: 266 QIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325
Query: 248 VILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC-CRRGSLHEEAAGVFEEMK 306
+++ Y K GM + + GVK D F++ I + G L A+ V++ M
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHK-GVKLDVVVFSSTIDVYVKSGDL-ATASVVYKRML 383
Query: 307 LAGFSPDKVTYNALLDVYGKCR--RPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364
G SP+ VTY L+ G C+ R EA + ++ G PSIVTY+SLI + + G
Sbjct: 384 CQGISPNVVTYTILIK--GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGN 441
Query: 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNA 424
L L M+++G PDV Y L+ G K G AM+ +M + N+ FN+
Sbjct: 442 LRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNS 501
Query: 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484
LI F E +KVF + KPD+ T+ T++ V G E +F M + G
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG 561
Query: 485 FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544
P+ + TLI A+ + + ++ M ++ D++ N V+ L + E +
Sbjct: 562 LEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDAS 621
Query: 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP 604
K F + G+ +P+ +TY++++ Y + R +D+ +ER F LK F P+
Sbjct: 622 KFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDE---------AERIFELLKVTPFGPNTV 672
Query: 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 664
TL +I + + + + M + G P+ TY LM +S+S + + + E+
Sbjct: 673 TLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM 732
Query: 665 LAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 724
KGI P I+SY+ +I C+ GR+ EA+ IF + D+ L+PDV+ Y + Y
Sbjct: 733 QEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL 792
Query: 725 VEALDVVRYMIKQGCKPN 742
VEA + +M++ G KP+
Sbjct: 793 VEAALLYEHMLRNGVKPD 810
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYZ9 | PP362_ARATH | No assigned EC number | 0.6763 | 0.9936 | 0.9621 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00007731001 | SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (811 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 793 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-40 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-33 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-27 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 4e-40
Identities = 123/467 (26%), Positives = 205/467 (43%), Gaps = 64/467 (13%)
Query: 303 EEMKLAG-FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361
E+M+ G DK+ + K R KEA + + ++ P++ T+N L+S A
Sbjct: 394 EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCAS 449
Query: 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421
++ A+ + + E G+ D YTTL+S K+GK ++ +VF EM +AG + N+ T
Sbjct: 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 422 FNALIKMHGNRGNFVEMMKVFDE----INKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVF 477
F ALI G ++ K F +K N KPD V +N L++ GQ+G V
Sbjct: 510 FGALIDGCARAG---QVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 478 KEMKRAG--FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535
EMK P+ T L+ A + G D+A +Y+ + E + Y + + +
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595
+ G W+ + I+ +MK
Sbjct: 626 QKGDWDFALSIYDDMK-------------------------------------------- 641
Query: 596 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655
KKG PD +A++ + G + K EIL G +Y++LM S ++N+
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT-F 714
+A ++ +I + ++P + + N +I A C ++ +A + SEM+ GL P+ ITY+
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE 761
VAS D V LD++ + G KPN I G C +R+E
Sbjct: 762 VASERKDDADV-GLDLLSQAKEDGIKPNLVMCRCIT-GLCL--RRFE 804
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-36
Identities = 139/637 (21%), Positives = 257/637 (40%), Gaps = 91/637 (14%)
Query: 61 SSSQPIHQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQ----VLQSLIDDSFDVKDIDSV 116
SS + I R L + + + S + KG + + + S D K+
Sbjct: 278 SSGKGIFAESKREELYTFYEEKQSRAKSSRLPNVKGLRKGVSSATNSL--SLDKKNNGVK 335
Query: 117 LSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLA--LDVFEWFRSCCSKDGNLVLRGS 174
++L Q+ G+ + D+ + G K +D +
Sbjct: 336 DAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPEYIDAYN----------------- 378
Query: 175 VIAVLISMLGKEGKVSVAASLLHGLHKDG-FDIDVYAYTSLITTYASNGRYREAVMVFKK 233
+L ++G++ LL + K G D+D + +EA K
Sbjct: 379 ------RLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431
Query: 234 MEEEGCKPTLITYNVILNVY-------GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286
+ PTL T+N++++V G + ++ LV+ AG+K D + TLI
Sbjct: 432 IRN----PTLSTFNMLMSVCASSQDIDGALR-----VLRLVQ---EAGLKADCKLYTTLI 479
Query: 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR----PKE--AMQVLREM 340
S C + + VF EM AG + T+ AL+D C R K A ++R
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID---GCARAGQVAKAFGAYGIMRSK 536
Query: 341 KINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAG 398
+ P V +N+LISA + G ++ A ++ +M I PD T L+ AG
Sbjct: 537 NVK---PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 399 KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN 458
+ + A +V++ + K + + +G++ + ++D++ K KPD V ++
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518
L+ V G G + + ++ ++ G ++++L+ A S ++ +A+ +Y+ +
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 519 GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578
+ P +ST NA++ AL G ++ ++ +EMK PN +TYS LL A + D
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 579 LALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR--QMVAKTNEILHFMNDSGFTP 636
L L + K+ G P++ + + RR + A ++ F DSG P
Sbjct: 774 LDL---------LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF--DSG-RP 821
Query: 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673
+ T + A V RE ++ G P +
Sbjct: 822 QIENKWT-----------SWALMVYRETISAGTLPTM 847
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 2e-35
Identities = 135/561 (24%), Positives = 256/561 (45%), Gaps = 50/561 (8%)
Query: 226 EAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL 285
A VF KM E L ++NV++ Y K G +++ + L M AGV+PD YTF +
Sbjct: 139 HAWYVFGKMPER----DLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCV 193
Query: 286 ISCCRRGSLHEEAAG--VFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343
+ C G + + A G V + GF D NAL+ +Y KC A V M
Sbjct: 194 LRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403
C +++N++IS Y +G E +EL M E+ + PD+ T T+++S E G +
Sbjct: 252 DC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAV 463
++ + G ++ N+LI+M+ + G++ E KVF ++ K D V+W +++
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF---SRMETK-DAVSWTAMISG 363
Query: 464 FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD 523
+ +NG+ + + M++ P+ T +++SA + G D + +++ G+
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 524 LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA-NGREIDQMLALS 582
+ NA++ ++ +++ ++F + + + ++++S++ N R + +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEAL---- 475
Query: 583 EEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF-----MNDSGFTPS 637
I+ + L LK P+ TL A +S R + EI + GF P
Sbjct: 476 --IFFRQMLLTLK-----PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP- 527
Query: 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697
N L+ +Y R R + + + D++S+N ++ Y +G+ A +F+
Sbjct: 528 ----NALLDLYVRC---GRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM-IKQGCKPNQNTYNSIVDGYCKL 756
M +SG+ PD +T+ + + + + + + L+ M K PN Y +VD +
Sbjct: 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 757 NQRYEAITFVNNLS-KLDPHV 776
+ EA F+N + DP V
Sbjct: 639 GKLTEAYNFINKMPITPDPAV 659
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 9e-33
Identities = 117/446 (26%), Positives = 193/446 (43%), Gaps = 51/446 (11%)
Query: 164 SKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLH-KDGFDIDVYAYTSLITTYASNG 222
S D +L+ SVI +LG E +HG K GF +DV SLI Y S G
Sbjct: 283 SVDPDLMTITSVI-SACELLGDER----LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF 282
+ EA VF +ME K +++ +++ Y K G+P +K + M+ V PD T
Sbjct: 338 SWGEAEKVFSRME---TK-DAVSWTAMISGYEKNGLP-DKALETYALMEQDNVSPDEITI 392
Query: 283 NTLISCCRRGSLHEEAAGVFEEMKLA---GFSPDKVTYNALLDVYGKCRRPKEAMQVLRE 339
+++S C L + GV + +LA G V NAL+++Y KC+ +A++V
Sbjct: 393 ASVLSAC--ACLGDLDVGV-KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH- 448
Query: 340 MKINGCLP--SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLS----- 392
+P ++++ S+I+ + EA+ QM+ + + P+ T LS
Sbjct: 449 -----NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARI 502
Query: 393 GFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKP 452
G GK+ A + + G P NAL+ ++ G F + +
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYAWNQF-----NSHEK 552
Query: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIY 512
D+V+WN LL + +G S +F M +G P+ TF +L+ A SR G Q + +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 513 KRM-LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571
M + +TP+L Y V+ L R G ++ +M P+ + +LL N
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL----N 665
Query: 572 GREIDQMLALSEEIYSERAFLELKKK 597
I + + L E + + EL
Sbjct: 666 ACRIHRHVELGE--LAAQHIFELDPN 689
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 114/500 (22%), Positives = 220/500 (44%), Gaps = 36/500 (7%)
Query: 264 MALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323
+ L+E M+ V D + L C EE + V + S NA+L +
Sbjct: 71 LKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130
Query: 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383
+ + A V +M + ++N L+ YA+ G +EA+ L +M+ G+ PD
Sbjct: 131 FVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 384 VFTYTTLLSGFEKAGKDESAM--KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441
V+T+ +L G + A +V + G + ++ NALI M+ G+ V V
Sbjct: 187 VYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501
FD + + D ++WN +++ + +NG E +F M+ P+ T ++ISA
Sbjct: 245 FDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT 561
G ++ +++ G D+S N+++ G W ++EK+F+ M+ K + ++
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TK-DAVS 356
Query: 562 YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISI---YGRRQM 618
+++++ Y D+ L E Y A +E SPD T+ +++S G +
Sbjct: 357 WTAMISGYEKNGLPDKAL----ETY---ALMEQ--DNVSPDEITIASVLSACACLGDLDV 407
Query: 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNT 678
K +E G + N L+ MYS+ + +A +V I K D+IS+ +
Sbjct: 408 GVKLHE---LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTS 460
Query: 679 VIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738
+I N R EA F +M + L P+ +T +++ A + ++ ++++ G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 739 CKPNQNTYNSIVDGYCKLNQ 758
+ N+++D Y + +
Sbjct: 520 IGFDGFLPNALLDLYVRCGR 539
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-28
Identities = 104/457 (22%), Positives = 190/457 (41%), Gaps = 36/457 (7%)
Query: 119 QLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAV 178
LD KS G L ++ L + AL++FE + C L S
Sbjct: 76 ARLDDTQIRKS---GVSLCSQIEKLVACGRHREALELFEILEAGCPFT----LPASTYDA 128
Query: 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238
L+ + ++ + GF+ D Y ++ + G +A +F +M E
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER- 187
Query: 239 CKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEA 298
L ++ I+ G + AL M G + TF ++ R S +
Sbjct: 188 ---NLASWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVML----RASAGLGS 239
Query: 299 AGVFEEMKL----AGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP--SIVTY 352
A +++ G D AL+D+Y KC ++A V +P + V +
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD------GMPEKTTVAW 293
Query: 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412
NS+++ YA G EEA+ L +M + G++ D FT++ ++ F + E A + +
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 413 AGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE 472
G +I AL+ ++ G + VFD + + N +++WN L+A +G +G ++
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTK 409
Query: 473 VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTPDLSTYNAVL 531
+F+ M G P TF ++SA G +Q I++ M E + P Y ++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 532 AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA 568
L R G+ +++ +A ++ KP +++LL A
Sbjct: 470 ELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTA 503
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-27
Identities = 129/545 (23%), Positives = 230/545 (42%), Gaps = 52/545 (9%)
Query: 203 GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262
GF++DV +LIT Y G A +VF +M C I++N +++ Y + G +
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGE-CLE 271
Query: 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMK----LAGFSPDKVTYN 318
+ L M+ V PD T ++IS C L +E G EM GF+ D N
Sbjct: 272 GLELFFTMRELSVDPDLMTITSVISAC--ELLGDERLG--REMHGYVVKTGFAVDVSVCN 327
Query: 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378
+L+ +Y EA +V M+ V++ ++IS Y ++GL ++A+E M +
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438
++PD T ++LS G + +K+ E G + NALI+M+ +
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498
++VF + D+++W +++A N E F++M P T +SA
Sbjct: 444 LEVF----HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
Query: 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN 558
+R G+ I+ +L G+ D NA+L R G + F + +
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----HEKD 553
Query: 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM 618
++++ LL Y + + L F + + G +PD T +++ R M
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVEL---------FNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 619 VAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYN 677
V + E H M + TP+L Y ++ + R+ A + + ++ I PD +
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661
Query: 678 TVIFAYCRNGRMKE-----ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 732
++ A CR R E A IF L P+ + Y + + AD+ + + VR
Sbjct: 662 ALLNA-CRIHRHVELGELAAQHIFE------LDPNSVGYYILLCNLYADAGKWDEVARVR 714
Query: 733 YMIKQ 737
+++
Sbjct: 715 KTMRE 719
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-20
Identities = 91/344 (26%), Positives = 140/344 (40%), Gaps = 45/344 (13%)
Query: 196 LHGL-HKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254
LH L + G V +LI Y+ +A+ VF + E+ +I++ I+
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIA--- 463
Query: 255 KMGMPWN----KIMALVEGMKSAGVKPDSYTFNTLISCCRR-GSL---HEEAAGVFEE-M 305
G+ N + + M +KP+S T +S C R G+L E A V +
Sbjct: 464 --GLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520
Query: 306 KLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365
GF P NALLD+Y +C R A + N +V++N L++ Y G
Sbjct: 521 GFDGFLP-----NALLDLYVRCGRMNYAWN-----QFNSHEKDVVSWNILLTGYVAHGKG 570
Query: 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA-GCKPNICTFNA 424
A+EL +MVE G+ PD T+ +LL ++G ++ F M PN+ +
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630
Query: 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484
++ + G G E INK PD W LL N E+ A
Sbjct: 631 VVDLLGRAGKLTEAYNF---INKMPITPDPAVWGALL-----NACRIHRHVELGELA-AQ 681
Query: 485 FIPERDT-----FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD 523
I E D + L + Y+ G +D+ + K M E G+T D
Sbjct: 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 8e-20
Identities = 91/438 (20%), Positives = 174/438 (39%), Gaps = 72/438 (16%)
Query: 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337
+ T++ L+ C V+ ++ +GF PD+ N +L ++ KC +A ++
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397
EM ++ ++ ++I G EA L +M E G + T+ +L +A
Sbjct: 182 DEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML----RA 233
Query: 398 GKDESAMKVFEEMRSAGCKPNIC--TF--NALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453
+ + +++ K + TF ALI M+ G+ + VFD P+
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD------GMPE 287
Query: 454 --IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511
V WN++LA + +G E ++ EM+ +G ++ TF+ +I +SR + A
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571
+ ++ G D+ A++ ++ G E + +F M + N +++++L+ Y N
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403
Query: 572 -GREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630
GR + F + +G +P+ T A++S + + EI M
Sbjct: 404 HGRGTKAV----------EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM- 452
Query: 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690
SEN IKP + Y +I R G +
Sbjct: 453 --------------------SEN-------------HRIKPRAMHYACMIELLGREGLLD 479
Query: 691 EASRIFSEMRDSGLVPDV 708
EA ++ +R + P V
Sbjct: 480 EA---YAMIRRAPFKPTV 494
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 7e-19
Identities = 87/406 (21%), Positives = 149/406 (36%), Gaps = 72/406 (17%)
Query: 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412
NS + A G LE+A++L M E+ + D Y L E E +V S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 413 AGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE 472
+ + NA++ M G V W VFG+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVH------------------AWY----VFGK------ 146
Query: 473 VSGVFKEMKRAGFIPERDTF--NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAV 530
+PERD F N L+ Y++ G FD+A+ +Y RML AGV PD+ T+ V
Sbjct: 147 -------------MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193
Query: 531 LAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID------QMLALSEE 584
L + ++ A + + ++D M +
Sbjct: 194 LRTCGGIPDLARGREVHAHVV----------------RFGFELDVDVVNALITMYVKCGD 237
Query: 585 IYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 644
+ S R + + D + NAMIS Y + E+ M + P L T ++
Sbjct: 238 VVSARLVFD---RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704
+ + ++ ++ G D+ N++I Y G EA ++FS M
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350
Query: 705 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750
D +++ ++ Y + L +AL+ M + P++ T S++
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-18
Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 47/319 (14%)
Query: 201 KDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPW 260
K G D + +LI Y+ G +A VF M E+ T + +N +L Y G
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYS- 306
Query: 261 NKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL 320
+ + L M+ +GV D +TF+ +I R +L E A + GF D V AL
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGI 380
+D+Y K R ++A V M +++++N+LI+ Y G +A+E+ +M+ G+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 381 TPDVFTYTTLLSGFEKAGKDESAMKVFEEM-RSAGCKPNICTFNALIKMHGNRGNFVEMM 439
P+ T+ +LS +G E ++F+ M + KP + +I++ G G E
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE-- 480
Query: 440 KVFDEINKCNCKPDIVTWNTLLA----------------------------------VFG 465
+ I + KP + W LL ++
Sbjct: 481 -AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539
Query: 466 QNGMDSEVSGVFKEMKRAG 484
+G +E + V + +KR G
Sbjct: 540 SSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 5e-18
Identities = 91/424 (21%), Positives = 168/424 (39%), Gaps = 68/424 (16%)
Query: 328 RRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVF 385
+ L + +I S+ S I G EA+EL +++E G T
Sbjct: 69 EVSESKDARLDDTQIRKSGVSLC---SQIEKLVACGRHREALEL-FEILEAGCPFTLPAS 124
Query: 386 TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445
TY L+ V+ + S+G +P+ N ++ MH G ++ ++FDE+
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505
+ N + +W T++ G E +F+EM G E TF ++ A + GS
Sbjct: 185 PERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT--YS 563
++ +L+ GV D A++ ++ G E + +F M P + T ++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------PEKTTVAWN 294
Query: 564 SLLHAYA-NGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT 622
S+L YA +G YSE A
Sbjct: 295 SMLAGYALHG-------------YSEEAL------------------------------- 310
Query: 623 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682
+ + M DSG + T++ ++ ++SR A+ ++ G DI++ ++
Sbjct: 311 -CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369
Query: 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742
Y + GRM++A +F M ++I++N +A Y +A+++ MI +G PN
Sbjct: 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
Query: 743 QNTY 746
T+
Sbjct: 426 HVTF 429
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 6e-16
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF 394
P +VTYN+LI Y + G +EEA++L +M + GI P+V+TY+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 2e-15
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 671 PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719
PD+++YNT+I YC+ G+++EA ++F+EM+ G+ P+V TY+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 6e-15
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 312 PDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361
PD VTYN L+D Y K + +EA+++ EMK G P++ TY+ LI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 382 PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK 427
PDV TY TL+ G+ K GK E A+K+F EM+ G KPN+ T++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255
DV Y +LI Y G+ EA+ +F +M++ G KP + TY+++++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-12
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN 571
PD+ TYN ++ + G E++ K+F EMK KPN TYS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 700
KG+KPD+++YNT+I CR GR+ EA + EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 277 PDSYTFNTLIS-CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326
PD T+NTLI C++G EEA +F EMK G P+ TY+ L+D K
Sbjct: 1 PDVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 9e-11
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536
T+NTLI Y + G ++A+ ++ M + G+ P++ TY+ ++ L +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 241 PTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS-CCR 290
P ++TYN +++ Y K G + + L MK G+KP+ YT++ LI C+
Sbjct: 1 PDVVTYNTLIDGYCKKGK-VEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 636 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685
P + TYNTL+ Y + A + E+ +GIKP++ +Y+ +I C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501
PD+VT+NTL+ + + G E +F EMK+ G P T++ LI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL 461
P++ T+N LI + +G E +K+F+E+ K KP++ T++ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376
G P +VTYN+LI R G ++EA+EL +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 2e-08
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411
G+ PDV TY TL+ G +AG+ + A+++ +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-08
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 708
++YNT+I C+ GR++EA +F EM++ G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704
++YN++I YC+ G+++EA +F EM++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD 523
T+NTLI + G ++A+ ++K M E G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-07
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP 522
+T+N L+ A ++ G D A+++ + M +G+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI 349
VTYN L+D K R +EA+++ +EMK G P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNI 419
TY TL+ G KAG+ E A+++F+EM+ G +P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 350 VTYNSLISAYARDGLLEEAMELKTQMVEIGI 380
VTYNSLIS Y + G LEEA+EL +M E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 1e-06
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 274 GVKPDSYTFNTLISC-CRRGSLHEEAAGVFEEMK 306
G+KPD T+NTLI CR G + +EA + +EM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRV-DEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT 242
Y +LI GR EA+ +FK+M+E G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGC 345
VTYN+L+ Y K + +EA+++ +EMK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 706
+ +YN ++ A + G A + EM+ SGL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341
G PD VTYN L+D + R EA+++L EM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520
T+N+LIS Y + G ++A+ ++K M E GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD 313
T+NTLI + EEA +F+EMK G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 350 VTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV 384
VTYN+LI + G +EEA+EL +M E GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGC 239
Y SLI+ Y G+ EA+ +FK+M+E+G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415
TY +L+SG+ KAGK E A+++F+EM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673
TYNTL+ ++ A ++ +E+ +GI+PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 384 VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP 417
+ TY LL KAG + A+ V EEM+++G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLP 347
TYNALL K P A+ VL EMK +G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 671
L TYN L+ +++ + A VL E+ A G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE 559
TYN ++ L + G E++ ++F EMK +P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-05
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650
PD+ T N +I Y ++ V + ++ + M G P++ TY+ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (105), Expect = 8e-05
Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 11/239 (4%)
Query: 539 MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKG 598
+ I E + L E+ + L L EE L+
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEA--------LELLP 54
Query: 599 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRSENFARA 657
S L + + + + E+L + P+L L + + A
Sbjct: 55 NSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114
Query: 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM--RDSGLVPDVITYNTFV 715
++L + LA PD+ + A G +EA ++ + D L
Sbjct: 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALG 174
Query: 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774
A A + EAL+++ +K + ++ Y KL + EA+ + +LDP
Sbjct: 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS 611
P+ +TY++L+ Y ++++ L L F E+KK+G P++ T + +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKL---------FNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI 454
T+N LI G E +++F E+ + +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485
VT+N+L++ + + G E +FKEMK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 58/278 (20%)
Query: 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWE 541
F T++ L+ A S ++Y + +G PD N VL + GM
Sbjct: 116 GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175
Query: 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP 601
+ ++F EM + N ++ +++ + + AL E++ + + + + F
Sbjct: 176 DARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWED--GSDAEPRTFVV 229
Query: 602 DIPTLNAMISIYGRRQM---VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 658
+ + S +Q+ V KT + F L+ MYS+
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTG-----VVGDTFVSC-----ALIDMYSK-------- 271
Query: 659 DVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 718
C G +++A +F M + + +N+ +A Y
Sbjct: 272 -------------------------C--GDIEDARCVFDGMPEK----TTVAWNSMLAGY 300
Query: 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756
A EAL + M G +Q T++ ++ + +L
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 244 ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDS 279
+TYN +++ K G + + L + MK G++PD
Sbjct: 1 VTYNTLIDGLCKAGR-VEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487
VT+NTL+ + G E +FKEMK G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKP 241
+ Y +L+ A G A+ V ++M+ G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 449 NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481
KPD+VT+NTL+ + G E + EM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 709 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742
+TYNT + EAL++ + M ++G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 8e-04
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 737 QGCKPNQNTYNSIVDGYCK 755
+G KP+ TYN+++DG C+
Sbjct: 1 KGLKPDVVTYNTLIDGLCR 19
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGF 310
T+N+LIS + EEA +F+EMK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 202 DGFDIDVYAYTSLITTYASNGRYREAVMVFKKME 235
G DV Y +LI GR EAV + +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444
G KP++ T+N LI G E +++ DE
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 524 LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP 557
L TYNA+L ALA+ G + + + EMK KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 702 SGLVPDVITYNTFVASYAADSLFVEALDVVRYM 734
GL PDV+TYNT + EA++++ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.91 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.91 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.8 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.71 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.46 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.39 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.21 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.16 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.15 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.1 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.03 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.8 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.77 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.75 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.71 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.62 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.4 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.3 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.06 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.85 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.65 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.45 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.44 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.34 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.33 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.19 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.16 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.06 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 95.05 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.94 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.94 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.88 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.87 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.51 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.31 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.12 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.04 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.53 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 93.52 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.5 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.34 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.81 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.6 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.56 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.54 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.83 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.8 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.77 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.48 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.43 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.05 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.0 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.83 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.55 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.45 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.07 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.71 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.69 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 88.68 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.65 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.63 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.62 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.51 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.92 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.88 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.86 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 87.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.63 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.61 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.37 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.03 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.91 | |
| COG5178 | 2365 | PRP8 U5 snRNP spliceosome subunit [RNA processing | 86.84 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.69 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.51 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.45 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 85.41 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.3 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.19 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.31 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.46 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.44 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.05 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.09 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.73 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.52 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 81.47 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 81.39 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 81.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.12 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-79 Score=699.88 Aligned_cols=602 Identities=19% Similarity=0.270 Sum_probs=358.9
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+..+++.+...+..+.|..++..+.+. ....+..+++.++..|++.|+++.|.++|+.|.. +|..+|+.+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~l 158 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSS-----HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVL 158 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHc-----CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHH
Confidence 3445555555555555555555555441 1113444555555555555555555555555542 245555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003829 215 ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 294 (793)
|.+|++.|++++|+.+|++|...|+.||..||+.++.+|++.+ ++..+.+++..|.+.|+.||..+|+.++.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP-DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc-chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 5555555555555555555555555555555555555555555 555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
+++|..+|++|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5555555555532 355555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 375 MVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI 454 (793)
Q Consensus 375 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 454 (793)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|...|+.||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 5555555555555555555555555555555555553 235555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL 534 (793)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 534 (793)
.+|+.++.+|++.|+.+++.++++.|.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555543 2445555555555
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+.+.+.+++. .+.+.|+.++..++++|+++|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~---------~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA---------HVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH---------HHHHhCCCccceechHHHHHHH
Confidence 555555555555555553 355555555555555555555555555443 3345566666666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 666666666666665 356666777777777777777777777777666666777777777777777777777777
Q ss_pred HHHHHH-HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 695 IFSEMR-DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 695 ~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+|++|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. ++||..+|+.|+.+|...|+.+.|....+++++++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 777766 45666666667777777777777777776666663 56666667766666666666666666666666666
Q ss_pred CCC
Q 003829 774 PHV 776 (793)
Q Consensus 774 ~~~ 776 (793)
|++
T Consensus 688 p~~ 690 (857)
T PLN03077 688 PNS 690 (857)
T ss_pred CCC
Confidence 653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-77 Score=682.31 Aligned_cols=616 Identities=21% Similarity=0.327 Sum_probs=588.2
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..++..+.+.|++++|+.+|+.+... +..++..+|..++.+|.+.+.++.|.+++..+.+.+..++...++.
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677888899999999999999999771 3446778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
|+..|++.|+++.|..+|++|. .||+++||.++.+|++.| .+++|.++|++|...|+.||..||+.++.+|+..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999996 579999999999999999 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| ..+|..+||++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 46799999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 374 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (793)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 534 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|+++ .. ++.||..+|+.++.+|
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m---------~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM---------LL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH---------Hh-CCCCCHhHHHHHHHHH
Confidence 9999999999999999974 68899999999999999999999998765 33 5899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
++.|+++.+.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+++ .+|..+|+.++.+|++.|+.++|.
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 579999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI-KQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.+++.|++.|++++|.+++++|.
T Consensus 575 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-- 652 (857)
T PLN03077 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652 (857)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--
Confidence 999999999999999999999999999999999999999999 68999999999999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHh
Q 003829 773 DPHVTKELECKLSDRIA 789 (793)
Q Consensus 773 ~~~~~~~~~~~l~~~l~ 789 (793)
..|+..+|..|+....
T Consensus 653 -~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 653 -ITPDPAVWGALLNACR 668 (857)
T ss_pred -CCCCHHHHHHHHHHHH
Confidence 4567888999988764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=600.01 Aligned_cols=523 Identities=20% Similarity=0.320 Sum_probs=439.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (793)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (793)
..+...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.| ..++|..+++.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCC----CCHHHHH
Confidence 34677788888888899999999999999998885 467778888889998888 88999999888864 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG 363 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 363 (793)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS--AGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (793)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 003829 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT 521 (793)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 521 (793)
|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC
Q 003829 522 PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP 601 (793)
Q Consensus 522 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 601 (793)
|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++++ +|...|+.|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~---------eM~~~Gi~P 752 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS---------EMKRLGLCP 752 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---------HHHHcCCCC
Confidence 99999999999999999999999999999888889999999999999999999999998866 456788899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----S-------------------ENFARAE 658 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~ 658 (793)
|..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998866432 1 1124566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 659 DVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|+.++.++++. .++|..++++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 666666666666666666666655555556666666665555555555556666666655321 245666666666666
Q ss_pred CCCCH
Q 003829 739 CKPNQ 743 (793)
Q Consensus 739 ~~p~~ 743 (793)
+.|+.
T Consensus 911 i~p~~ 915 (1060)
T PLN03218 911 VVPSV 915 (1060)
T ss_pred CCCCc
Confidence 66553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=592.77 Aligned_cols=544 Identities=20% Similarity=0.304 Sum_probs=388.3
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..++..+.+.|+++.|+++|++|... +-...+...+..++..|.+.|.+++|..+|+.|.. |+..+|+.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~----gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKR----GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34666666666667777777777776551 11223445556666667777777777777766653 56777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.| +.++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777777777777777777777777 67777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI--NGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777754 45667777777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 372 KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 372 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL 531 (793)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 531 (793)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77777777777777777777777777777766777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 532 AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS 611 (793)
Q Consensus 532 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 611 (793)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.++++..+.+.+.. | ..+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~---f----~~g~------------ 820 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS---F----DSGR------------ 820 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh---h----hccc------------
Confidence 777777777777777777777777777777777665443 234444444332211 0 0000
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
.....+..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..++++|...+..|+..+|+++++++.+. .++
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 011123356799999999999999999999999998889999999999999999888889999999999998432 468
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003829 692 ASRIFSEMRDSGLVPDVI 709 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~ 709 (793)
|..+|++|.+.|+.|+..
T Consensus 899 A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 899 AFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHcCCCCCcc
Confidence 999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=546.52 Aligned_cols=471 Identities=21% Similarity=0.368 Sum_probs=441.1
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (793)
..+..+|..+.+.|++++|+.+|++|.. .....++..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~----~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEA----GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3678889999999999999999999976 122346889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
|+.+|++.|++++|.++|++|. .||.++||.++.+|++.| ++++|.++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 9999999999999999999996 479999999999999999 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
..+.+.+++..+.+.|+.+|..+|++|+.+|+++|++++|.++|++| ..+|.++||.+|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 45699999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 374 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
+|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.+|..+|++|+.+|++.|++++|.++|++|. .+|
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 478
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLSTYNAVLA 532 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 532 (793)
..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 599999999999999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMIS 611 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 611 (793)
+|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|..+++++. +..| +..+|..+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-----------~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY-----------GMGPEKLNNYVVLLN 536 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh-----------CCCCCCCcchHHHHH
Confidence 999999999999999876 457899999999999999999999988876542 2344 4668888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFT 635 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~ 635 (793)
.|++.|++++|.++++.|.+.|+.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCc
Confidence 888888888888888888888764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=539.05 Aligned_cols=475 Identities=20% Similarity=0.323 Sum_probs=397.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
+...|+.+|..|.+.|++++|+.+|+.|...+ ++.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-----------------------------------~~~~~~~t~~~ll 130 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGC-----------------------------------PFTLPASTYDALV 130 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------------------------------CCCCCHHHHHHHH
Confidence 55577777777777777777777777776543 1234445555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
.+|++.++.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| ..||..+|+.+|.+|++.|+++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHH
Confidence 555555566667777777777777777777888888888888888888888877 3468888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 526 (793)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 287 ----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 287 ----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred ----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 4578888888888888888888999999998888889999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
|+.++++|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|+ +|...|+.||..+|
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~---------~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE---------RMIAEGVAPNHVTF 429 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH---------HHHHhCCCCCHHHH
Confidence 9999999999999999999998886 4688899999999999999999998866 45678899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMND-SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++ ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999976 588999999999999999999999999998765 468899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 686 NGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
.|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.+++++|.+.|+.+.
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 9999999999999876 5564 57899999999999999999999999999887643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=364.17 Aligned_cols=641 Identities=13% Similarity=0.062 Sum_probs=503.7
Q ss_pred chhhhHHHHHHhhhcCCCCCCccccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCC
Q 003829 109 DVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK 188 (793)
Q Consensus 109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (793)
+...+...+..++...|... .............|+++.|+..|+.+.+ .++ ....++..+..++...|+
T Consensus 242 ~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~---~~~~~~~~~~~~~~~~g~ 310 (899)
T TIGR02917 242 EFEEAEKHADALLKKAPNSP-----LAHYLKALVDFQKKNYEDARETLQDALK---SAP---EYLPALLLAGASEYQLGN 310 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCC---CchhHHHHHHHHHHHcCC
Confidence 45566666666666554311 1111222233457889999999988876 222 233455566777888999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVE 268 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~ 268 (793)
+++|...++.+.+..+. +...+..++..+.+.|++++|...+..+.+.. +.+...+..+...+.+.| ++++|.++|+
T Consensus 311 ~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 387 (899)
T TIGR02917 311 LEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG-DFEKAAEYLA 387 (899)
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 99999999988876543 67778888889999999999999999988764 346778888889999988 8999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 269 GMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS 348 (793)
Q Consensus 269 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 348 (793)
++.+.... +...+..+...+...|++++|...++.+.+.... .......++..+.+.|++++|..+++++... .+.+
T Consensus 388 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 464 (899)
T TIGR02917 388 KATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDN 464 (899)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC
Confidence 98876533 5667777778888899999999999988876422 3445667788888999999999999988775 4556
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKM 428 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (793)
..++..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+ +.+..++..+...
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 542 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGL 542 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 7788889999999999999999999988763 4456677778888889999999999999988764 3467788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
+.+.|+.++|...++++...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...+..++..+...|++++|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887664 4456777888888999999999999999988754 34677888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
...|+.+.+.... +...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+..
T Consensus 621 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 697 (899)
T TIGR02917 621 VSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK- 697 (899)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 9999998876543 66778888888889999999999999888653 44677888888888999999999998876532
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003829 589 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG 668 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 668 (793)
. .+.+...+..++..+...|++++|.+.|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+..
T Consensus 698 --------~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 698 --------Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred --------h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 24566778888888889999999999999988764 444677778888899999999999999988763
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNS 748 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 748 (793)
+.+...+..++..|...|++++|..+|+++.+... .+..+++.++..+...|+ .+|+.+++++++.. +.+..++..
T Consensus 767 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 767 -PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDT 842 (899)
T ss_pred -CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHH
Confidence 45677888888899999999999999999988543 256788888999999998 88999999988742 224677788
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 789 (793)
++..+...|++++|..+++++++.+|. +...+..+...+.
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 888899999999999999999999887 4445555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=358.22 Aligned_cols=609 Identities=13% Similarity=0.089 Sum_probs=306.3
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLI 215 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 215 (793)
+..+...+...|+++.|...++.+.+. .+ .+..++.....++...|++++|...|+.+.+.++. +...+..+.
T Consensus 230 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~ 302 (899)
T TIGR02917 230 LLALATILIEAGEFEEAEKHADALLKK---AP---NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAG 302 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHH
Confidence 334444444555555555555555441 11 12223333334444555555555555555544322 223333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 003829 216 TTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295 (793)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 295 (793)
.++...|++++|...|+++.+.. +.+...+..+...+.+.| ++++|...++.+...... +...+..+...+.+.|++
T Consensus 303 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG-RVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCH
Confidence 45555555555555555555442 223444455555555555 555555555555544322 344455555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
++|.++|+++.+.. +.+...+..+...+...|++++|.+.++++.+... ........++..+.+.|++++|.++++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55555555555442 12344444555555555555555555555544321 12233444455555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 003829 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIV 455 (793)
Q Consensus 376 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 455 (793)
... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++++...+ +.+..
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 543 23344455555555555555555555555555432 2234444555555555555555555555554432 22344
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 456 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
++..+...+...|+.++|..+++++.+.+. .+...+..++..+...|++++|.++++.+.+.... +...|..+...+.
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 612 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555555555555555555555555554432 23444455555555555555555555555543322 4455555555555
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGR 615 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 615 (793)
..|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.. ..+.+...+..++..+..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE----------LKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------cCCCCHHHHHHHHHHHHH
Confidence 5555555555555554432 22344455555555555555555555544321 112234455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
.|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++... .|+..++..++.++...|++++|.+.
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555543 344445555555555555555555555555553 23334444555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 696 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
++++.+.... +...+..++..|...|++++|.+.|+++++.+ +.+..++..+++.+...|+ ++|+.+++++++..|+
T Consensus 759 ~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 5555553211 34455555555555555555555555555432 2234555555555555555 5555555555555555
Q ss_pred CCH
Q 003829 776 VTK 778 (793)
Q Consensus 776 ~~~ 778 (793)
++.
T Consensus 836 ~~~ 838 (899)
T TIGR02917 836 IPA 838 (899)
T ss_pred CcH
Confidence 443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-28 Score=288.20 Aligned_cols=437 Identities=11% Similarity=0.055 Sum_probs=325.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH------------
Q 003829 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP-DVFTY------------ 387 (793)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------ 387 (793)
...+...|++++|+..|++.++. .+.+...+..+...|.+.|++++|++.|++..+..... +...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45567789999999999988875 23367788888999999999999999999988764221 11111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 003829 388 TTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (793)
Q Consensus 388 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (793)
......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 122445678899999999999988874 3456777788889999999999999999988764 334556666666664 4
Q ss_pred CChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 468 GMDSEVSGVFKEMKRAGFI--------PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 468 ~~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
++.++|..+++.+...... .....+..+...+...|++++|.+.|+++++..+. +...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 5778888887665332100 01224555677788899999999999999987655 67788888899999999
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
+++|...++++.+.. +.+...+..+...+...++.++|+..++.+.....-..+...........+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988642 2345555555556678899999998887643210000000000000112244567788899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
++|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|++.++++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999882 25677788889999999999999999999999863 446789999999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 700 RDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KP---NQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 700 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
.+ ..| +...+..++.++...|++++|.++++++++..- .| +...+..++..+...|+.++|+..|++++.
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 444 456678889999999999999999999987421 12 234667778899999999999999999985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-26 Score=267.89 Aligned_cols=611 Identities=15% Similarity=0.075 Sum_probs=458.5
Q ss_pred cccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 003829 131 DLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA 210 (793)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 210 (793)
.....++.-++.....++.+.|.+.+.++.. .+++ ++.++..++.++.+.|+.++|.+.++.+.+..+. +...
T Consensus 26 ~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~---~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~ 98 (1157)
T PRK11447 26 TAQQQLLEQVRLGEATHREDLVRQSLYRLEL---IDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAY 98 (1157)
T ss_pred CHHHHHHHHHHHHHhhCChHHHHHHHHHHHc---cCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHH
Confidence 3445578888888999999999999999988 4444 7889999999999999999999999999988654 4333
Q ss_pred H----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 003829 211 Y----------------TSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSA 273 (793)
Q Consensus 211 ~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~ 273 (793)
. ..+.+.+.+.|++++|+..|+++.+.++ |+.. ............| ++++|++.++++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPA-QRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHh
Confidence 2 3345578899999999999999997643 3332 2211222223346 899999999999987
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--------------------HHHHHHHHHHhcCChHHH
Q 003829 274 GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--------------------TYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 274 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--------------------~~~~li~~~~~~g~~~~A 333 (793)
.+. +...+..+...+...|+.++|+..++++...... +.. .+...+..+-.......|
T Consensus 177 ~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A 254 (1157)
T PRK11447 177 YPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAA 254 (1157)
T ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHH
Confidence 644 5667788888899999999999999999764211 110 111111111122234455
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 334 MQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...+++.......|... .......+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+.
T Consensus 255 ~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 255 RSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56665554432233322 2244667888999999999999999863 447788899999999999999999999999876
Q ss_pred CCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 003829 414 GCKP-NICTF------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (793)
Q Consensus 414 ~~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 480 (793)
.... ....+ ......+.+.|++++|++.|+++.... +.+...+..+...+...|++++|++.|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4322 11111 223456779999999999999998874 345677888899999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 003829 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (793)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 552 (793)
.+.... +...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..+++..+
T Consensus 412 L~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 412 LRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 987533 5566667777664 46789999988765432110 0123455667788899999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 553 GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS 632 (793)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 632 (793)
.. +-+...+..+...|.+.|++++|+..+++++. . .+.+...+..+...+...++.++|...++.+...
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~---------~-~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ---------Q-KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 63 33566788889999999999999999887643 1 1334555666666678899999999999887544
Q ss_pred CCCCCHH---------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 633 GFTPSLT---------TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 633 ~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...++.. .+..++..+...|+.++|+.+++. .+.+...+..+...+.+.|++++|++.|+++++.
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~- 632 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR- 632 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3222221 123456778899999999999872 2556677888999999999999999999999994
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.| +...+..++.+|...|++++|++.++++.+. .| +..++..++.++...|++++|.++++++++..|+.+
T Consensus 633 -~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 633 -EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 44 5688999999999999999999999998864 44 467778899999999999999999999999877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-24 Score=238.99 Aligned_cols=583 Identities=12% Similarity=0.034 Sum_probs=422.6
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 145 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
..|+++.|+..|+.+.+ .+|+ +..++..++.++.+.|++++|+..+++.++..+. |...+..+... +++
T Consensus 56 ~~Gd~~~A~~~l~~Al~---~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~ 124 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ---QVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAAI----PVE 124 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccC
Confidence 35899999999999987 4444 6788899999999999999999999999988553 55555554322 889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNV--------YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCRRGSLH 295 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~ 295 (793)
++|..+|+++.+..+. +..++..+... |.+ +++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 125 ~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 125 VKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 9999999999987432 44455555444 444 466666666 4444455556655555 8899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
++|+.++.++.+.+ +.+......|..+|.+ .++ +++..+++.. ...+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999986 3355567778788888 477 8888886542 345888999999999999999999999999
Q ss_pred HHHcCCC-CCHHHHH------------------------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 375 MVEIGIT-PDVFTYT------------------------------TLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFN 423 (793)
Q Consensus 375 m~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (793)
+...-.. |+..++. .++..+.+.++++.+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 8654211 2222111 12444555566554443311 2333332
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHH
Q 003829 424 ALIKMHG--NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA-G-FIPERDTFNTLISAY 499 (793)
Q Consensus 424 ~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l~~~~ 499 (793)
..+..+. ..+...++.+.++.+.... +-+......+.....+.|+.++|..+|+..... + -..+.....-++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 1222222 3366667777777766542 335666666666778899999999999988763 1 122334444677777
Q ss_pred hccCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 500 SRCGS---FDQAMSI----------------------YKRMLEA-GV-TP--DLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 500 ~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
.+.+. ..++..+ ++..... +. .+ +...|..+..++.. |+.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 76655 2333222 2222111 11 23 56677777777776 8889999988887
Q ss_pred hcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 551 KGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMN 630 (793)
Q Consensus 551 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 630 (793)
... .|+......+...+...|++++|+..++++.. .+|+...+..+...+.+.|+.++|...+++..
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~-----------~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL-----------HDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 765 46655444455556789999999999876431 24455566777888899999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003829 631 DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI 709 (793)
Q Consensus 631 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 709 (793)
+.+ +.+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|...++++++ ..| +..
T Consensus 570 ~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~ 644 (987)
T PRK09782 570 QRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSN 644 (987)
T ss_pred hcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 875 444444444445555679999999999999985 56788999999999999999999999999999 555 457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.++.++.++...|++++|+..++++++. .| +...+..++.++...|++++|+..++++++..|++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 8899999999999999999999999984 55 488899999999999999999999999999999976664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-23 Score=228.48 Aligned_cols=558 Identities=12% Similarity=0.032 Sum_probs=403.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 259 (793)
...+...|++++|+..|+.+++..+. +..++..|...|...|++++|+..+++..+. .|+...|..++..+ + +
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~-~ 123 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---P-V 123 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---c-c
Confidence 33444569999999999999998776 6889999999999999999999999999987 44544444444333 5 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCh
Q 003829 260 WNKIMALVEGMKSAGVKPDSYTFNTLISC--------CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL-LDVYGKCRRP 330 (793)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~ 330 (793)
+++|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 124 ~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 124 EVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 88999999999987654 45555555554 5554 55665555 3333334445544444 8999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
++|++++.++.+.+. .+......|..+|.. .++ +++..+++. .+.-|......++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999853 355567778788888 477 888888553 2345788899999999999999999999998
Q ss_pred HHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 410 MRSAGCK-PNICTF------------------------------NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN 458 (793)
Q Consensus 410 ~~~~~~~-~~~~~~------------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 458 (793)
+...-.. |+..++ ..++..+.+.++++.+.++.. +.|......
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 346 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLE 346 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHH
Confidence 7643211 222222 122455666677775555422 233333221
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--GVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 536 (793)
.-..+....+...++.+.++.|.+... -+......+.......|+.++|.++|+..... +-..+......++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 112222345777788888888877633 26667777777788999999999999999873 123345566677777777
Q ss_pred cCC---hHHHHHH----------------------H---HHHhcCCCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 537 GGM---WEQSEKI----------------------F---AEMKGGRCKP--NELTYSSLLHAYANGREIDQMLALSEEIY 586 (793)
Q Consensus 537 ~g~---~~~A~~~----------------------~---~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (793)
.+. ..++..+ + ...... .++ +...|..+..++.. ++.++|+..+.+..
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 655 2233222 2 222211 123 56677777777766 78888998776544
Q ss_pred hHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 587 SERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
. ..|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++++++
T Consensus 504 ~-----------~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 504 Q-----------RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred H-----------hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2355544555566667899999999999998664 45555667778889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 003829 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNT 745 (793)
Q Consensus 667 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 745 (793)
.+ +.+...+..+...+...|++++|...++++++ ..|+...+..++.++.+.|++++|+..++++++. .|+ ...
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a 645 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNY 645 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 64 22334444444555667999999999999999 6677889999999999999999999999999984 564 788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELEC 782 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 782 (793)
+..++.++...|++++|+..++++++.+|++....++
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999999999999999987765443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-22 Score=208.19 Aligned_cols=574 Identities=14% Similarity=0.111 Sum_probs=319.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG--CKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
++.|.+.|...++..++ ++-.+-.-.......|+|..|+.+|..+..-+ +.||+. -.+...+.+.| ..+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~-~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLG-MSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhcc-chhhHHHH
Confidence 35555555555554332 32222222222223455666666666544332 222321 11223334555 55556666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCR---RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 343 (793)
|+...+.++. ++.++..|...-. ....+..+..++...-... .-+....+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 6655554321 2222222221111 1223344444444444332 224455555566666666666666666555443
Q ss_pred CCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 344 GCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT 421 (793)
Q Consensus 344 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (793)
... --..+|-.+.++|-..|++++|...|.+..+..-.--...+.-+...+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 211 01224555566666666666666666555543211112233345555666666666666666655542 234445
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCCHHHHH
Q 003829 422 FNALIKMHGNRG----NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM----KRAGFIPERDTFN 493 (793)
Q Consensus 422 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~ 493 (793)
...|...|...+ ..+.|..++.+..+.. +.|...|-.+...+.+..-+.. +.+|... ...+..+.....+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 555555555443 3455555555554432 3345555555554444433333 4444332 2334445566666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh-hHH
Q 003829 494 TLISAYSRCGSFDQAMSIYKRMLEA---GVTPDL------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYS 563 (793)
Q Consensus 494 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 563 (793)
.+.......|.++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+. .|... .|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 6666666777777777776666544 112222 12223444445556667777777776654 33322 333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYN 642 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 642 (793)
.++......++..+|..+++.++. ....+...+..+++.+.+...+..|.+-|..+.+.- ..+|..+.-
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~----------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN----------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh----------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 333222334556666666554432 123344555555666666666666666555554331 124555555
Q ss_pred HHHHHHHc------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 643 TLMYMYSR------------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVIT 710 (793)
Q Consensus 643 ~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 710 (793)
.|.+.|.+ .+..++|+++|.++++.. +-|...-|.++-+++..|++.+|..+|.+..+.... +..+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCce
Confidence 55554432 245788999999888863 446777788888889999999999999999986442 4467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
|..++.+|..+|++-.|++.|+...++-. ..+..+...|+.++.+.|++.+|.+++..+....|.++...|+..+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 88999999999999999999999876433 3357888899999999999999999999999999999888777543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-24 Score=211.13 Aligned_cols=429 Identities=16% Similarity=0.174 Sum_probs=223.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 361 (793)
...+..-..+.|++++|++.-...-..+ +.+....-.+-.++.+..++++....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4455555667777877777665544432 122233333445566666666655444444333 23345677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 003829 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICT-FNALIKMHGNRGNFVEMMK 440 (793)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~ 440 (793)
.|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 777777777777777753 224566777777777777777777777777664 344332 2334444445677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 441 VFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
.|.+.+... +--...|..|...+...|+...|+..|++..+..+. -...|..|...|...+.+++|...|.+......
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 766665442 112345666666666666666666666666554321 234555555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
. ....+..+...|..+|.++-|+..+++.++. .| -...|+.|..++...|++.+|.+.|.+.+. +
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-----------l 349 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-----------L 349 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-----------h
Confidence 2 3344444444555555555555555555543 22 233455555555545555555544443321 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003829 600 SP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYN 677 (793)
Q Consensus 600 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 677 (793)
.| .....+.|...|...|.+++|..+|....+.. +.-....+.|...|-+.|++++|+..|++.++ +.|+ ...|+
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 22 23344444444444444444444444444431 12223344444444444444444444444444 2333 33444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.++..|-..|+.+.|...+.+++. +.|.. ..++.|+..|...|++.+|++.|+++++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 444444444444444444444444 33322 3444444444444444444444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=205.65 Aligned_cols=441 Identities=13% Similarity=0.128 Sum_probs=305.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
...|.+-..+.|++.+|++....+-.+ .+.+....-.+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666667778888887777655443 22233344444455666666666555444444432 3345677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhCCChHHHHH
Q 003829 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN-TLLAVFGQNGMDSEVSG 475 (793)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 475 (793)
.|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.+.. .|+..... .+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888877763 224667777777888888888888888777765 34443333 33344455677788877
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 003829 476 VFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC 555 (793)
Q Consensus 476 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 555 (793)
-+.+.++.... -...|..|.-.+...|+...|++.|++.++.++. -...|..|...|...+.+++|...+.+....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 77777765321 3346677777777788888888888887776443 4566777777788888888888877777654
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 556 KP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSG 633 (793)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 633 (793)
.| ....+..+...|...|.++.|+..|++.++ +.|+ ...|+.|..++-..|++.+|...|.+.+...
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-----------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-----------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHh-----------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 34 445666666677778888888888776543 3444 5677888888888888888888888877763
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITY 711 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 711 (793)
+.-....+.|...|...|.+++|..+|.....- .|. ...++.|...|-..|++++|...++++++ +.|+. ..|
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 445666777888888888888888888877763 444 55677788888888888888888888877 77765 677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 784 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 784 (793)
+.++..|-..|+.+.|++.+.+++. +.|. .+.++.|+..|...|+..+|+.-|++++++.|+-+....+.+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 8888888888888888888888776 4565 677777888888888888888888888888887766654443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-21 Score=197.36 Aligned_cols=602 Identities=11% Similarity=0.039 Sum_probs=427.6
Q ss_pred hHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 003829 149 TDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--FDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 149 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
.+.|...|..+.+ ..+.+.-.+..-+.+....|++..|..+|..++... ..+|+ .-.+..++++.|+.+.
T Consensus 146 ~~~A~a~F~~Vl~------~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK------QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEK 217 (1018)
T ss_pred HHHHHHHHHHHHh------hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhh
Confidence 5788888888877 222344444444455567788999999999865543 33443 3345677889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMG--MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
|+..|.+..+.++ .++.++-.|...-.... ..+..+..++...-..+.. |....+.|..-|.-.|+++.+..+...
T Consensus 218 a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 9999999988642 23333333322222221 1345666666666554433 677888888888888999999999888
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003829 305 MKLAGFS--PDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382 (793)
Q Consensus 305 ~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 382 (793)
+...... .-...|.-+.++|-..|++++|..+|.+..+....-.+..+.-+...|.+.|+++++...|+...+. .+.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~ 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPN 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Ccc
Confidence 8776321 1234577888999999999999999988876532212345567788899999999999999998886 244
Q ss_pred CHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCH
Q 003829 383 DVFTYTTLLSGFEKAG----KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI----NKCNCKPDI 454 (793)
Q Consensus 383 ~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 454 (793)
+..+...+...|...+ ..+.|..++.+..+.- +.|...|-.+..+|....-+.. +..|... ...+..+..
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 5566666666666554 5677888888877663 4577888888887766554433 6655543 344555778
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFI------PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (793)
Q Consensus 455 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 525 (793)
...|.+...+...|.+++|...|+..... ... ++..+-..+...+-..++++.|.+.|..+++..+. -+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId 531 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YID 531 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHH
Confidence 88899999999999999999999887754 112 22223445666777788999999999999887322 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPT 605 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (793)
.|..+.......+...+|...+++....+ ..++..+..+...+.+..++..|..-|+.+.+ +....+|..+
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~--------~~~~~~D~Ys 602 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILK--------KTSTKTDAYS 602 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHh--------hhccCCchhH
Confidence 45555544455688889999999888653 45666677777778887788778777665543 2223367777
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 003829 606 LNAMISIYGR------------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673 (793)
Q Consensus 606 ~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 673 (793)
..+|++.|.+ .+..++|+.+|.++++.. |-|...-|.+.-+++..|++.+|..+|.++.+.. ..+.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCC
Confidence 7777776543 345788999999998875 6788888999999999999999999999999873 3356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD- 751 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 751 (793)
.+|..++++|...|+|..|.++|+...+. ...-+..+...|++++.+.|++.+|.+.+..+...........+|..+-
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 78999999999999999999999999874 4444678899999999999999999999999887422212333433221
Q ss_pred -----------------HHHccCCHHHHHHHHHHHhhCCCC
Q 003829 752 -----------------GYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 752 -----------------~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.....+..++|.++|.++.+.++.
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 122345678888899888888655
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-20 Score=201.57 Aligned_cols=434 Identities=11% Similarity=-0.004 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
..+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34556666677778888888888777765 4566677777777777788888888777777642 22455777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMM 439 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (793)
...|++++|+..|......+...+. ....++..+.. ..+........+.. +.+...+..+.. |..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 7778887777777665544211111 11111111111 12222222222221 111111111111 11111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HhccCCHHHHHHHHHHHH
Q 003829 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA---YSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~ 516 (793)
.-+...... .+.. ...+..+... ....+++++|.+.|+.+.
T Consensus 278 ~~~~~~~~~--~~~~----------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 278 AGLEDSNEL--DEET----------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred hhhhccccc--cccc----------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 111110000 0000 0000000000 012345566666666665
Q ss_pred HCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHH
Q 003829 517 EAG-VTP-DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLE 593 (793)
Q Consensus 517 ~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (793)
+.+ ..| ....+..+...+...|++++|...+++.++. .| ....|..+...+...|++++|+..+++++.
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~------ 393 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK------ 393 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 543 111 2334555555556666666666666666543 23 334555555566666666666666655432
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 003829 594 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 673 (793)
Q Consensus 594 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 673 (793)
. .+.+..++..++..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++.++. .+.+.
T Consensus 394 ---~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~ 467 (615)
T TIGR00990 394 ---L-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAP 467 (615)
T ss_pred ---h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCh
Confidence 0 12345566666666666677777777776666653 445555666666666777777777777776654 23345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTY 746 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 746 (793)
..|+.++.++...|++++|.+.|+++++.....+. ..++..+..+...|++++|.++++++++. .|+ ...+
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~ 545 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAV 545 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHH
Confidence 66666667777777777777777776662211011 01111222233356777777777776653 333 4456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..++..+.+.|++++|+.+++++.++.+.
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 66777777777777777777777666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=192.50 Aligned_cols=432 Identities=11% Similarity=0.012 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD 322 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 322 (793)
...+......+.+.| ++++|+..|++.++. .|+...|..+..+|.+.|++++|...++...+.. +.+...|..+..
T Consensus 127 a~~~k~~G~~~~~~~-~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNK-DFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 446778888999999 999999999999875 5677889999999999999999999999999874 335778899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 323 VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES 402 (793)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 402 (793)
+|...|++++|+..|......+.. +......++..+.. ..+........+.. +.+...+..+ ..+......+.
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCc
Confidence 999999999999999877554222 22222222222222 22333333333332 2221222222 22222222222
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhCCChHHHHHH
Q 003829 403 AMKVFEEMRSAGCKPNI-CTFNALIKM---HGNRGNFVEMMKVFDEINKCN-C-KPDIVTWNTLLAVFGQNGMDSEVSGV 476 (793)
Q Consensus 403 a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 476 (793)
...-+.+..+. .++. ..+..+... ....+++++|.+.|++....+ . +.....|+.+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~-------------- 339 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGT-------------- 339 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHH--------------
Confidence 22112211111 1110 001111111 012345566666666555432 1 112233444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 003829 477 FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCK 556 (793)
Q Consensus 477 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 556 (793)
.+...|++++|...+++.++.... ....|..+...+...|++++|...|+++.+.. +
T Consensus 340 ---------------------~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 340 ---------------------FKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred ---------------------HHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 444445555555555554443221 23344444444555555555555555554431 2
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003829 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 636 (793)
Q Consensus 557 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 636 (793)
.+...+..+...+...|++++|+..+++.+. . .+.+...+..+...+.+.|++++|+..|++..+.. +.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---------l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---------L-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 2344455555555555555555555554332 0 12234455556666677777777777777776653 45
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII------SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VI 709 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 709 (793)
+...++.+..++...|++++|+..|++.+......+.. .++..+..+...|++++|.++++++++ +.|+ ..
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~ 543 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDI 543 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 56777777777778888888888888877642111110 111222233346888888888888877 3443 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+..++.++...|++++|+++|+++.+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778888888888888888888888763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=191.43 Aligned_cols=301 Identities=13% Similarity=0.075 Sum_probs=185.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 003829 181 SMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT---LITYNVILNVYGKMG 257 (793)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g 257 (793)
..+...|++++|...|+++.+.++. +..++..++..+...|++++|..+++.+.+.+..++ ...+..++..|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445667777777777777766443 556777777777777777777777777766432111 234666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 003829 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A 333 (793)
++++|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 122 -~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 -LLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred -CHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 67777777777765422 2455666677777777777777777777766532221 11344555666667777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 334 MQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766542 22344566666667777777777777777665432222344556666666667777777766666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCH
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFKEMKRAGFIPER 489 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~ 489 (793)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.+++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444566666666666666666666666554 4555566655555443 34566666666666655444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=189.61 Aligned_cols=301 Identities=14% Similarity=0.113 Sum_probs=181.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD---SYTFNTLISCC 289 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~ 289 (793)
..+..+...|++++|+..|.++.+.++ .+..++..+...+...| ++++|..+++.+...+..++ ..++..+...|
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344556678888999999999888642 35567888888888888 78888888888776532221 23556666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI----VTYNSLISAYARDGLL 365 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 365 (793)
.+.|++++|..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777642 335666777777777777777777777777665332211 1344555666667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (793)
++|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766543 22344555566666666666666666666665432222344555666666666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCC
Q 003829 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKRMLEAGVT 521 (793)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 521 (793)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..++. .|+.+++..+++++.++++.
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 544 233334444555555555555555555555443 2444444444444432 23455555555555544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-15 Score=147.38 Aligned_cols=582 Identities=10% Similarity=0.044 Sum_probs=263.5
Q ss_pred CChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 147 KKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
++...|..++..+++ .+|. ++..|..-.+.=-..|++..|..+...-.+.- +-+..+|.--+ +....+.
T Consensus 265 ~DikKaR~llKSvre---tnP~---hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~ 333 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRE---TNPK---HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDV 333 (913)
T ss_pred HHHHHHHHHHHHHHh---cCCC---CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHH
Confidence 356688888888887 4444 44456666666667788888877776544432 22444443322 2333444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEM 305 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 305 (793)
|..+.....+.. +.++..|--....-. +...=..++++.++. -|+ +..|.. .......+.|+-++.+.
T Consensus 334 aK~vvA~Avr~~-P~Sv~lW~kA~dLE~----~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~~~darilL~rA 402 (913)
T KOG0495|consen 334 AKTVVANAVRFL-PTSVRLWLKAADLES----DTKNKKRVLRKALEH--IPRSVRLWKA----AVELEEPEDARILLERA 402 (913)
T ss_pred HHHHHHHHHHhC-CCChhhhhhHHhhhh----HHHHHHHHHHHHHHh--CCchHHHHHH----HHhccChHHHHHHHHHH
Confidence 544444444431 222323322221111 112222333333332 122 112221 12223333344444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC
Q 003829 306 KLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM----VEIGIT 381 (793)
Q Consensus 306 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~ 381 (793)
.+. ++.....| -+|.+..-|+.|.+++++..+. ++.+...|.+-...--.+|+.+...+++.+- ...|+.
T Consensus 403 vec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~ 476 (913)
T KOG0495|consen 403 VEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE 476 (913)
T ss_pred HHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee
Confidence 443 12122222 2233334445555555554443 4444445544444444455555444444332 233444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 382 PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN--ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (793)
Q Consensus 382 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (793)
.+...|..=...|-..|.+-.+..+....+.-|+... ..+|+.-.+.|.+.+.++-|..+|...++.. +-+...|..
T Consensus 477 i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlr 555 (913)
T KOG0495|consen 477 INRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLR 555 (913)
T ss_pred ecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 4444444444445555555555555554444443311 2344444455555555555555555444331 223344444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
....--..|..++...+|.+....-. -....+......+-..|+...|..++..+.+.... +...|..-+.......+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 44444444555555555555544321 13333344444444445555555555555544333 44444444444455555
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
++.|..+|.+.... .|+...|..-+..-.-.++.++|++++++.+. .++.-...|..+.+.+-+.+++
T Consensus 634 ~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----------~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 634 LERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK----------SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----------hCCchHHHHHHHhHHHHHHHHH
Confidence 55555555554432 34444444444433444455555555444322 1111233444444455555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
+.|.+.|..-.+. +|..+..|-.|...-.+.|++-+|..++++...++ +-+...|...+..-.+.|+.+.|..++.++
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554444433 23344444444444444455555555555554442 223444555555555555555555555444
Q ss_pred HHCC-----------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003829 700 RDSG-----------------------------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSI 749 (793)
Q Consensus 700 ~~~~-----------------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 749 (793)
++.- ..-|+.+....+..+....++++|.+.|++.++. .|| -.+|..+
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~f 857 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWF 857 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHH
Confidence 4410 1123444444444444555555555555555542 222 3444444
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 750 VDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 750 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
...+.+.|.-+.-.+++++.....|.
T Consensus 858 ykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 44455555555555555555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-14 Score=145.59 Aligned_cols=583 Identities=11% Similarity=0.044 Sum_probs=413.8
Q ss_pred hHHHHHHhhhcCCCCCCccccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHH
Q 003829 113 IDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVA 192 (793)
Q Consensus 113 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (793)
+.-+|..+....|.- +..+....+--...|++..|..+...--+ ..+ .+..+|.-.+ +....+.|
T Consensus 270 aR~llKSvretnP~h-----p~gWIAsArLEEvagKl~~Ar~~I~~GCe---~cp---rSeDvWLeai----RLhp~d~a 334 (913)
T KOG0495|consen 270 ARLLLKSVRETNPKH-----PPGWIASARLEEVAGKLSVARNLIMKGCE---ECP---RSEDVWLEAI----RLHPPDVA 334 (913)
T ss_pred HHHHHHHHHhcCCCC-----CchHHHHHHHHHHhhHHHHHHHHHHHHHh---hCC---chHHHHHHHH----hcCChHHH
Confidence 444555555554431 12233333333345677777665544222 112 2444554333 45666778
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003829 193 ASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS 272 (793)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~ 272 (793)
..+.-..++.-+ .++..|...+..- .+...=.+++++.++. ++.++..|...+.. . +.+.|..++.+..+
T Consensus 335 K~vvA~Avr~~P-~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKaAVel----E-~~~darilL~rAve 404 (913)
T KOG0495|consen 335 KTVVANAVRFLP-TSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKAAVEL----E-EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHhCC-CChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHHHHhc----c-ChHHHHHHHHHHHH
Confidence 888887777643 3666664444332 2234456788888876 34466677765543 3 45668888888877
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCC
Q 003829 273 AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM----KINGCLPS 348 (793)
Q Consensus 273 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 348 (793)
.=+. ... |..++.+..-|+.|..+++...+. ++-+...|.+-...--.+|+.+...+++++- ...|+..+
T Consensus 405 ccp~-s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 405 CCPQ-SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred hccc-hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeec
Confidence 5211 222 344566667788899999888775 5667778877777777889999888888764 44578888
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALI 426 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 426 (793)
...|..=...+-..|..--+..+....+..|+... ..|+..-...|.+.+.++-|+.+|...++- ++-+...|...+
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~ 557 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHH
Confidence 88888888888888998888888888888886543 357777888899999999999999988875 344677788777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 427 KMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
..--..|..+.-..+|++....- +.....|......+-..|+...|..++....+.+.. +...+..-+........++
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHH
Confidence 77778888888888998887752 334556666677778889999999999888887544 6778888888888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN-ELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
.|..+|.+.... .+....|..-+....-.++.++|.+++++.++. -|+ ...|..+.+.+.+.++++.|...|..-
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999888765 456666666666666678889999999888875 343 446777777888888888888776532
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
-+.++..+..|..|...--+.|.+-+|..++++..-.+ |.+...|...|.+-.+.|+.+.|..+..+++
T Consensus 712 ----------~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 712 ----------TKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred ----------cccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334456677777777778888888888888887776 6678888888888888888888888777766
Q ss_pred HC-----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 003829 666 AK-----------------------------GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFV 715 (793)
Q Consensus 666 ~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 715 (793)
+. .+.-|..+...+...+....++++|+++|.+.++ ..||. .+|..+.
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFY 858 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHH
Confidence 53 1223445556666777788899999999999999 55655 7888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
..+..+|.-++-.+++.+... ..|. -..|..
T Consensus 859 kfel~hG~eed~kev~~~c~~--~EP~hG~~W~a 890 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCET--AEPTHGELWQA 890 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHH
Confidence 899999998888999999876 4564 334433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-18 Score=188.31 Aligned_cols=357 Identities=8% Similarity=-0.046 Sum_probs=257.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003829 387 YTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (793)
Q Consensus 387 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (793)
...++..+.+.|+.++|..+++..+..... +...+..++......|++++|.+.++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 455677788899999999999998877433 45556666677778999999999999988764 3456778888888899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003829 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (793)
Q Consensus 467 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (793)
.|++++|...++++.+... .+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999887643 35667788888888999999999988888766544 33334333 347778999999999
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----H
Q 003829 547 FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAK----T 622 (793)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A 622 (793)
++.+......++...+..+..++...|++++|+..+++++. . .+.+...+..+...+...|++++ |
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---------~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---------R-GLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---------c-CCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 88887653233444445556677788888888888776542 1 23456677778888888888875 7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 623 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
...|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 270 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~- 346 (656)
T PRK15174 270 AEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR- 346 (656)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 88888887764 5567778888888888888888888888888753 33456677778888888888888888888887
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 703 GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 703 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..|+. ..+..++.++...|++++|+..|+++++. .|+.. ...+++|...+.++++.-+.
T Consensus 347 -~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 347 -EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred -hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHhcCC
Confidence 34443 33444566778888888888888888763 34321 23344555555555555433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-17 Score=183.81 Aligned_cols=330 Identities=11% Similarity=0.025 Sum_probs=165.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 179 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
++..+.+.|++++|..+++.++...+. +...+..++.+....|++++|+..|+++.+..+ .+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g- 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK- 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC-
Confidence 344444555555555555555554333 334444444555555555555555555555431 23445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
++++|+..++++.+.... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555555554221 3444455555555555555555555555443211 12222222 22455555666655555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES----AMKVFEEMRSAG 414 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~ 414 (793)
.+......++...+..++..+...|++++|++.++++.+.. +.+...+..+...+...|++++ |...++.+.+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55443222223333344455555566666666665555542 2234445555555555555553 555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 415 CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNT 494 (793)
Q Consensus 415 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 494 (793)
+.+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...|+.+.+.+.. +...+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 2244555555555556666666666665555442 223344445555555666666666666555554221 1222333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC
Q 003829 495 LISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 495 l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+..++...|++++|.+.|+++.+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555566666666666665554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-15 Score=156.84 Aligned_cols=612 Identities=12% Similarity=0.088 Sum_probs=409.1
Q ss_pred hccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 003829 143 LGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG 222 (793)
Q Consensus 143 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (793)
+.-+|+.+.|.+++..+.+ ..+....+|..+..++-..|+.+++...+--+....+. |...|-.+.......|
T Consensus 149 lfarg~~eeA~~i~~EvIk------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIK------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHhCCHHHHHHHHHHHHH------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 3346999999999999987 23457889999999999999999999888777665554 6789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHcCCCHHHH
Q 003829 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT----LISCCRRGSLHEEA 298 (793)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~A 298 (793)
.+++|.-+|.++++.. +++....---...|.+.| +...|.+-|.++.+.....|-.-+.. +++.+...++.+.|
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999985 335555556677889999 89999999999998765333333333 34567778888999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---------------------------CChh
Q 003829 299 AGVFEEMKLAG-FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL---------------------------PSIV 350 (793)
Q Consensus 299 ~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~ 350 (793)
.+.++.....+ -..+...++.++..|.+...++.|...+..+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998877632 2345667889999999999999999988887662111 1222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIG--ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKM 428 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 428 (793)
. ..++-++......+....+.....+.. ..-+...|..+..+|.+.|++.+|+.+|..+......-+..+|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 122334444444444444555555555 3445678999999999999999999999999987666678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHh
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR--------AGFIPERDTFNTLISAYS 500 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~~~ 500 (793)
|...|..++|.+.|+.++... +.+...--.|...+.+.|+.++|.+.++.+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998763 33456666777889999999999999998652 234455555566667788
Q ss_pred ccCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHH------Hhc
Q 003829 501 RCGSFDQAMSIYKRMLEAG-----VTP-----------------DLSTYNAVLAALARGGMWEQSEKIFAE------MKG 552 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~ 552 (793)
..|+.++-..+-..|+... +-| .......++.+-.+.++.....+-... ...
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 8888877665555554321 101 111122222333333332211111111 011
Q ss_pred CCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 003829 553 GRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP----TLNAMISIYGRRQMVAKTNEIL 626 (793)
Q Consensus 553 ~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 626 (793)
.+...+. ..+..++.++++.+.+++|..+...+.....| ..+.. .-...+.+....+++..|...+
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f--------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF--------FQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh--------hccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111 13345666778888899988887665442222 11211 2234445667788999999999
Q ss_pred HHHHhC-CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 627 HFMNDS-GF---TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 627 ~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
+.|... +. +--...||...+...+.++-.--..++..+.......+.......++....++.+..|+..+-++..
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 888765 11 1223446655555666655444444444444432222233444445666778899999999888887
Q ss_pred CCCCCH-HHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 703 GLVPDV-ITYNTFVASYAAD----------SLFVEALDVVRYMIKQGC-KPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 703 ~~~p~~-~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..||. .+-..++.++... -..-+++.++++..+... .-..+++..++.+|-..|-..-|+.+|++++
T Consensus 769 -~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 769 -QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred -hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 55553 2222222222211 123456667766655321 1136778889999999999999999999999
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 848 ~~~p~ 852 (895)
T KOG2076|consen 848 EVSPK 852 (895)
T ss_pred CCCcc
Confidence 99654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-17 Score=184.73 Aligned_cols=417 Identities=12% Similarity=0.096 Sum_probs=267.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 313 DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLS 392 (793)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 392 (793)
+.....-.+.+....|+.++|++++.+.... .+.+...+..+...+...|++++|.+++++.++.. +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444445555566677777777777666542 22334456666667777777777777777766652 334445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 003829 393 GFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE 472 (793)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 472 (793)
.+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 6666777777777777766652 22444 6666666666777777777776666553 2233444445555555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCh---HHHH
Q 003829 473 VSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAAL-----ARGGMW---EQSE 544 (793)
Q Consensus 473 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~ 544 (793)
|++.++.... .|+.. ...+ .......+... ...+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~----------------~~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEK----------------RDLE-------------ADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHH----------------HHHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 6655544332 11100 0000 00001111111 112223 6777
Q ss_pred HHHHHHhcC-CCCCCHh-hHH----HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 003829 545 KIFAEMKGG-RCKPNEL-TYS----SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS-PDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 545 ~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 617 (793)
..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+. ..+.. |+. ....+...|...|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll---------~~~~~~P~~-a~~~la~~yl~~g 286 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK---------AEGQIIPPW-AQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---------ccCCCCCHH-HHHHHHHHHHhcC
Confidence 777777743 1123221 111 11334456789999999887654 22211 222 2222577899999
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGI-----------KPD---IISYNTVI 680 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~ 680 (793)
++++|+..|+++.+..... .......+..++...|++++|..+++++..... .|+ ...+..++
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999987653111 134566677788999999999999999987521 122 23456677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
..+...|++++|+++++++... .| +...+..++..+...|++++|++.++++++. .|+ ...+..++..+.+.|+
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCC
Confidence 8889999999999999999984 44 4688899999999999999999999999984 565 6777788888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHH
Q 003829 759 RYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+++|...++++++..|++..+.
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999987653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-16 Score=172.32 Aligned_cols=449 Identities=13% Similarity=0.112 Sum_probs=294.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.... ..........++..|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 55677778888888777766 3442 233 6777777778888888877777521 1112223333355677778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888877763 334555566667777777777777777777665 3444444444444444555555777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST 526 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 526 (793)
+.+ +.+...+..+..++.+.|-...|.++..+-. +..+-...... +.+.|.+..+... .+...-
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~----~~~~~~ 260 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAV----LPTRSE 260 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcc----cccccc
Confidence 663 3345566666677777777766665544321 11111100000 0111111111111 000000
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCH-h----hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGG-RCKPNE-L----TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
-. +---.+.|+.-++.+... +..|.. . ...-.+.++...+++.++++.|+. +...+.+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~---------l~~~~~~ 324 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA---------MEAEGYK 324 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------hhhcCCC
Confidence 00 000124555555555532 112321 1 222344567788999999988775 4455655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-----FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI------ 669 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 669 (793)
.-..+-..+.++|...+++++|..+|+.+.... .+++......|..+|...+++++|..+++++.+...
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 556788899999999999999999999997643 133455467899999999999999999999997411
Q ss_pred -----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003829 670 -----KPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 741 (793)
Q Consensus 670 -----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 741 (793)
.|| ...+..++..+...|+..+|++.++++...... |......++..+...|.+.+|.+.++.+.. +.|
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 122 233455677788999999999999999984333 778899999999999999999999977765 466
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 742 N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 742 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+ ..+....+.++...|++++|..+.+++.+..|++...
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 5 6777788999999999999999999999999997754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-16 Score=179.12 Aligned_cols=408 Identities=12% Similarity=0.067 Sum_probs=297.2
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+...+......|+.++|+.++..+.. ..+....++..+..++...|++++|.++++.+++..+. +...+..+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRV------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 344445556678999999999888764 12346667888999999999999999999998877544 67778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003829 215 ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL 294 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 294 (793)
+.++...|++++|+..++++.+.. +.+.. +..+..++...| +.++|+..++++.+..+. +...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 33556 888888899999 899999999999987654 55566667777888899
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCChh-HH----HH
Q 003829 295 HEEAAGVFEEMKLAGFSPDK------VTYNALLDVYG-----KCRRP---KEAMQVLREMKIN-GCLPSIV-TY----NS 354 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 354 (793)
.++|...++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999988876654 2221 11222233222 12234 6788888888754 1222221 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 003829 355 LISAYARDGLLEEAMELKTQMVEIGIT-PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP---NICTFNALIKMHG 430 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 430 (793)
.+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++++|+.+|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22235678889999999999999987653211 1345666677788
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 431 NRGNFVEMMKVFDEINKCNC-----------KPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
..|++++|.+.++.+..... .|+ ...+..+...+...|+.++|+++++++....+ .+...+..++
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 99999999999998876531 122 23445667788889999999999999887643 3677888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhh
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT 561 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 561 (793)
..+...|++++|++.++++.+..+. +...+......+.+.|++++|..+++++++. .|+...
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 8899999999999999998887543 5667777777888889999999999999875 455443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-15 Score=152.79 Aligned_cols=576 Identities=11% Similarity=0.038 Sum_probs=338.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
.-..+..+...|++++|..++.+++++.+. ....|..|..+|-..|+.+++...+-.+-..++ -|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHh
Confidence 333445566679999999999999998665 778999999999999999999999888876653 367899999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN----ALLDVYGKCRRPK 331 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~ 331 (793)
.| .++.|.-.|.+.++..+. +...+-.-...|-+.|+...|...|.++.....+.|..-.. ..++.|...++-+
T Consensus 220 ~~-~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LG-NINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cc-cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99 899999999999988644 44444455667889999999999999999874322322222 3356677788889
Q ss_pred HHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 003829 332 EAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY----------------------- 387 (793)
Q Consensus 332 ~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----------------------- 387 (793)
.|.+.++..... +...+...++.++..+.+...++.|......+......+|..-+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888763 23345668889999999999999999988888763333332211
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 388 ---TTLLSGFEKAGKDESAMKVFEEMRSAG--CKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (793)
Q Consensus 388 ---~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (793)
.-++-++......+....+...+.+.. +..+...|.-+..+|...|++.+|+++|..+.....--+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 111222233333333333334444333 233445555666666666666666666666655443344555666666
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHH
Q 003829 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA--------GVTPDLSTYNAVLAAL 534 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 534 (793)
.|...|.+++|.+.|+..+...+. +...-..|...+-+.|+.++|.+.++.+..- +..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 666666666666666665554322 3444455555555666666666665554311 1222233333333444
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
.+.|+.++-..+...|.... .....+. -+..++.. ......+..-.......++.+-.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~-----------~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDF------LKKRYIF-----PRNKKKRR-----------RAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHH------HHHHHhc-----chHHHHHH-----------HhhccccccccchhHHHHHHHHh
Confidence 45555554444433333210 0000000 00000000 00000011112222333333333
Q ss_pred hcCCHHHHHH------HHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHH
Q 003829 615 RRQMVAKTNE------ILHFMNDSGFTPSLT--TYNTLMYMYSRSENFARAEDVLREILAKGI--KPDI---ISYNTVIF 681 (793)
Q Consensus 615 ~~g~~~~A~~------~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~ 681 (793)
+.++...... .+......+...+.. .+..++..+++.+.+++|+.+...+..... .++. ..-..++.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 3332111111 111111223222222 345677788899999999999988876531 1121 22345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 003829 682 AYCRNGRMKEASRIFSEMRDS-GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCK 755 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 755 (793)
+.+..+++.+|...+..|... +. .|. ...|+.......+.|+-.-=.+++..+... .|+ ...+...+.-+..
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhh
Confidence 778889999999999999874 22 221 134444444444555433333333333322 222 3333334455667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 756 LNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+.+.-|...+-++...+|+++-+.
T Consensus 753 ~~s~~~Al~~y~ra~~~~pd~Pl~n 777 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFRQNPDSPLIN 777 (895)
T ss_pred ccchHHHHHHHHHHHHhCCCCcHHH
Confidence 8899999999999999999977764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-15 Score=163.63 Aligned_cols=474 Identities=10% Similarity=0.065 Sum_probs=284.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
.+.+.-.-+....+.|+++.|+..|++..+..+.-....+ .++..+...| +.++|+..+++..... .........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3344444455567999999999999999887432112233 7777788888 8899999999887211 11233333345
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+...|++++|.++++++.+.. +-+...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 57788899999999999998874 234666777788888999999999999998764 445555544444444466666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|++.++++.+.. +.+...+..++.++.+.|-...|.++.++-... +.+.. +.-| . .+.|.+..+...
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~--~~~l-~-------~~~~a~~vr~a~ 254 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH--YRQL-E-------RDAAAEQVRMAV 254 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH--HHHH-H-------HHHHHHHHhhcc
Confidence 6999999999874 446777788888888888888888776653321 11111 1110 0 011111111100
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHc-CCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGM---DSEVSGVFKEMKRA-GFIPERD-----TFNTLISAYSRCGSFDQAMSIYKRMLE 517 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~-~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 517 (793)
. +.. ...++ .+.|+.-++.+... +..|... ...-.+-++...|++.++++.|+.+..
T Consensus 255 ~----~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 255 L----PTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred c----ccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 0 000 00001 12233333333321 1112111 112233345555666666666666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHH
Q 003829 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-----KPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFL 592 (793)
Q Consensus 518 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 592 (793)
.+......+-..+.++|...+++++|..+++.+..... .++......|.-++...+++++|..+++++.......
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 55444445556666666666666666666666543210 1122223455566666666666666665543200000
Q ss_pred --HHH--HCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 593 --ELK--KKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 593 --~~~--~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
... .....|| ...+..++..+...|++.+|.+.++++.... |-|......+.+.+...|.+.+|++.++.+...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 000 0011122 2234445666778888999999998887764 778888888888888899999999988776664
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
-+.+..+....+.++...|++++|..+.+.+.+ ..|+......|-+
T Consensus 480 -~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 480 -APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred -CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 233456677777888888899999888888888 5565543333333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-15 Score=145.90 Aligned_cols=491 Identities=13% Similarity=0.088 Sum_probs=252.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH---
Q 003829 205 DIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITY-NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSY--- 280 (793)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~--- 280 (793)
..+..+...|..-|..+..+.+|+..|+-+.+...-|+.-.. ..+.+.+.+.. .+.+|+++++..+..-+.-+..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr-~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR-EFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh-hHHHHHHHHHHHHhhccccchhhHH
Confidence 345556667777788888889999999888877666665433 23556666666 7899999998877654433333
Q ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------
Q 003829 281 -TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP------------ 347 (793)
Q Consensus 281 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 347 (793)
..+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++.-.|+-++..+.|.+|+.--..+
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 3344444577889999999999888776 5777766666666667888899999998887542222
Q ss_pred ChhHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 348 SIVTYNSLIS-----AYARDG--LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNIC 420 (793)
Q Consensus 348 ~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (793)
+....+.-|. -.-+.. +-++++-.--+++.--+.|+- ..= .+-..+.++.-....+..+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~g---------~dwcle~lk~s~~~~la~d-- 420 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AAG---------CDWCLESLKASQHAELAID-- 420 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hcc---------cHHHHHHHHHhhhhhhhhh--
Confidence 2222222111 011100 011111111111111111210 000 0111111111111000001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 421 TFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
.-..-..-|.++|+++.|+++++-+.+..-+..+..-+.|...+.. -.++.+|..+-+..+... .-+......-...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 1111223466788888888888777665433333333333222222 234455555544443321 1122222222223
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL---AALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
....|+++.|.+.|++.+.. |...-.+|. -.+...|+.++|++.|-++..- ...+..++..+...|....+.
T Consensus 500 ~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred eeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 34456777777777777664 333322222 2345566777777776665421 122444555555556555566
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
..|++++.++ ..-++.|+.++..|.+.|-+.|+-..|...+-.-.+. ++-+..+..-|...|....-++
T Consensus 575 aqaie~~~q~----------~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 575 AQAIELLMQA----------NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHHHHHh----------cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 6666554332 1223444555555666666666655555554444333 3455555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
+|+.+|++..- +.|+..-|..|+. ++.+.|+++.|.++|+...+. +.-|...+.-|++.+...|. .+|.++..+
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 66666655554 3555555555443 333445666666666555542 22244455555555544443 234444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-13 Score=128.21 Aligned_cols=396 Identities=10% Similarity=0.090 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
.|++..|.++|++-..- .|+...|.+.|+.-.+.+.++.|..+++..+- +.|++.+|-..+..-.+.|.+..|..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 35666666666666553 56666666666666666666666666666544 456666666666666666666666666
Q ss_pred HHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 372 KTQMVEIGI--TPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN--ICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 372 ~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
++..++.=. ..+...+.++...-..+..++.|.-+|+-.++.- +.+ ...|..+...--+-|+.....+..-.-
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K-- 306 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK-- 306 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh--
Confidence 666554310 0112233333333345566777777777766652 212 233333333333344433222221100
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HH
Q 003829 448 CNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL-ST 526 (793)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 526 (793)
-.--++.+++.+ +.|-.++...++.....|+.+...++|+.++..-.+... ..
T Consensus 307 -------------------------Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 307 -------------------------RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred -------------------------hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 001123333333 235566666666666666666666666666654211111 11
Q ss_pred HHHHH-----HHH---HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH----cCCCHHHHHHHHHHHHhHHHHHHH
Q 003829 527 YNAVL-----AAL---ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA----NGREIDQMLALSEEIYSERAFLEL 594 (793)
Q Consensus 527 ~~~l~-----~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 594 (793)
|...| -++ ....+.+.+.++++..++. ++....|+..+--.|+ +..++..|.+++..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~---------- 429 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN---------- 429 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH----------
Confidence 11111 111 2356667777777777662 3445555555444443 45666777666553
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCH
Q 003829 595 KKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG-IKPDI 673 (793)
Q Consensus 595 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 673 (793)
..|..|...+|...|..-.+.++++.+..++++.++.+ |.|..+|......-...|+.++|..+|+-+++.. +....
T Consensus 430 -AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 430 -AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred -HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 34667777777777777777777777777777777765 5567777777777777777888888877777642 22235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-----ADS-----------LFVEALDVVRYMI 735 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 735 (793)
..|.+.|+.-...|.++.|..+++++++... -..+|..++..-. +.| ....|..+|+++.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~rt~--h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDRTQ--HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHhcc--cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5677777777777777888888877777422 2234444433222 233 4556677776664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-14 Score=133.84 Aligned_cols=343 Identities=16% Similarity=0.203 Sum_probs=228.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG--MPWNKIMALVEGMKSAGVKPDSYTFNT 284 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~~a~~~~~~~~~~~~~p~~~~~~~ 284 (793)
.+.+=|.|+... ..|..+++.-+|++|...|++.+...-..|+...+-.+ ...-.-.+.|-.|.+.|-. ...+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 455667776654 67889999999999999998877776666665544322 1111223333344443322 11122
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 364 (793)
+.|... . ++-+.. +.+..+|..+|.+.||.-..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 ------K~G~vA--d-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVA--D-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHH--H-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 223332 2 222222 3467788888888888888888888888887776777888888887654322
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 003829 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES----AMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE-MM 439 (793)
Q Consensus 365 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 439 (793)
...+++.+|....+.||..|+|.++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 226788888888888888888888888888887765 45777888888888888888888888888777533 44
Q ss_pred HHHHHHHh----CCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHhccCC
Q 003829 440 KVFDEINK----CNCK----PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG----FIPER---DTFNTLISAYSRCGS 504 (793)
Q Consensus 440 ~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~g~ 504 (793)
.++.++.. +..+ .|..-+...+..|....+.+-|.++-.-+.... +.|+. .-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 44444322 2222 234556666777777777777777655444211 22221 245667777788888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 003829 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYA 570 (793)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (793)
.+.....|+.|+-.-+-|+..+...++++....|.++-..+++.+++..|..-+......++..++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 888888888888877777888888888888888888888888888887664444444444444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-14 Score=132.88 Aligned_cols=453 Identities=16% Similarity=0.188 Sum_probs=284.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYA--SNGRYREA-VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 261 (793)
.+|.+..+.-+++.|...|.+.+..+...|.+..+ .+.+.--| .+.|-.|.+.| ..+..+|. .| +
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK--------~G---~ 194 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK--------SG---A 194 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--------cc---c
Confidence 47788888888999988888888877777765543 33332222 34555555554 22333442 23 2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
-|.-+++... -...+|.++|.++|+-...+.|.+++++......+.+..++|.+|.+-.-. .-.+++.+|.
T Consensus 195 vAdL~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 195 VADLLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred HHHHHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 2333333221 256678888888888888888888888877766677788888887654322 2267777887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----
Q 003829 342 INGCLPSIVTYNSLISAYARDGLLEE----AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES-AMKVFEEMRS---- 412 (793)
Q Consensus 342 ~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~---- 412 (793)
.....||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 77788888888888888888887654 45677788888888888888888888887776633 4444444432
Q ss_pred CCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 413 AGC----KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN----CKPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 413 ~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
+.+ +.|...+...+..|.+..+.+.|.++..-+.... +.++ ..-|..+....|+....+.....|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 2244556666777777777777777765553321 1222 2345667777788888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh-
Q 003829 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL- 560 (793)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 560 (793)
-.-+.|+..+...++++....|.++-.-++|..++..|.......... ++..|......|+..
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCChH
Confidence 877778888888888888888888888888888887654433222222 222233222223222
Q ss_pred --hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C
Q 003829 561 --TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG----F 634 (793)
Q Consensus 561 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~ 634 (793)
-+.....-|+ -++.++.+. . -..+.+ ........+.++-.+.+.|+.++|.+++..+.+.+ .
T Consensus 490 r~Ql~~~~ak~a--ad~~e~~e~---~-----~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~ 557 (625)
T KOG4422|consen 490 REQLQVAFAKCA--ADIKEAYES---Q-----PIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPR 557 (625)
T ss_pred HHHHHHHHHHHH--HHHHHHHHh---h-----HHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCC
Confidence 1222222111 011111111 1 112333 34455667777777888899999999988885542 2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
.|.......+++.-.+.++...|..+++-+...+.+--.-.-+-+...|.-+
T Consensus 558 ~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iN 609 (625)
T KOG4422|consen 558 SPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAIN 609 (625)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcC
Confidence 3444445567777778888999999998887664332222344444455444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-12 Score=126.62 Aligned_cols=438 Identities=12% Similarity=0.074 Sum_probs=310.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVIL 250 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll 250 (793)
+...|.....-=...+++..|..+|+.++..+.. +...|...+.+-.++.....|..+|++.... -|.+. .|.-.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 4445666666666788999999999999877654 7778999999999999999999999999875 34443 455555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
-.--..| +...|.++|+..... .|+...|++.+..-.+-+..+.|..++++.+-. .|++.+|-.....-.++|+.
T Consensus 149 ymEE~Lg-Ni~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 149 YMEEMLG-NIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHhc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 5555667 899999999998875 799999999999999999999999999999865 69999999999999999999
Q ss_pred HHHHHHHHHHHHc-CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 331 KEAMQVLREMKIN-GC-LPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 331 ~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
..|..+|+...+. |. .-+...+.+....-.++..++.|.-+|+-.+.. ++-+ ...|......--+-|+.....+.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988765 11 112335666666667788899999999988876 3333 33444444444455665444333
Q ss_pred --------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH--------HHHHhCC
Q 003829 407 --------FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI--VTWNTLL--------AVFGQNG 468 (793)
Q Consensus 407 --------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~ 468 (793)
++.+++.+ +.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|.-.| -.-....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444443 457778888888888889999999999998865 33321 1222222 2223567
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 469 MDSEVSGVFKEMKRAGFIPERDTFNT----LISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (793)
Q Consensus 469 ~~~~a~~~~~~m~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (793)
+.+.+.++|+..++. ++....||.. ......++.++..|.+++..++. ..|...++...|..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 778888888887773 3334444433 33334567778888888877664 4677778888888778888888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 545 KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 624 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 624 (793)
.++++.++.+ +-+..+|......-...|+.+.|..+|+-.++ +..+..-...|-+.|+.-...|.+++|..
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--------qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS--------QPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--------CcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 8888888753 33666777776666677777777777765443 11122223345555555556666777777
Q ss_pred HHHHHHhC
Q 003829 625 ILHFMNDS 632 (793)
Q Consensus 625 ~~~~~~~~ 632 (793)
+++++++.
T Consensus 529 LYerlL~r 536 (677)
T KOG1915|consen 529 LYERLLDR 536 (677)
T ss_pred HHHHHHHh
Confidence 77666654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-14 Score=135.09 Aligned_cols=261 Identities=12% Similarity=0.122 Sum_probs=113.7
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh-cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA-ALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 498 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
.+.+.|+++.|.++++-+.+++-+.....-+.|-. .|.+ ..++.+|..+-+.....+ .-+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677888888888777766533222222222221 1222 223444444444333211 11222111111222234555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
++|.+.|++.+..+ ..-...+-.+.-.+-..|++++|+++|-++... +..+..++-.+.+.|....+..
T Consensus 507 dka~~~ykeal~nd----------asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 507 DKAAEFYKEALNND----------ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred HHHHHHHHHHHcCc----------hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 55555555433100 000111122222334445555555555444332 1234444444445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
.|++++-+.... ++.|+.+...|...|-+.|+-..|..++-.-.+ ..| +..+..-|+.-|....-+++|+.+|+++
T Consensus 576 qaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555444443 333444555555555555555555544433333 222 3344444444444444455555555554
Q ss_pred HHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 735 IKQGCKPNQNTYNSIV-DGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.- ++|+..-|..++ .++.+.|++.+|.++|+..-..-|+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 32 345544454332 2333445555555555555555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-13 Score=132.69 Aligned_cols=277 Identities=15% Similarity=0.072 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
.-+.........-+...+++.+..++++.+.+.... ....+..-|..+...|+..+-..+-.++.+. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 346667777778888999999999999999987433 5555666667888889888888888888775 35577899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 566 LHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 644 (793)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 644 (793)
.--|...|+..+|.+.+.+.. .+.+. ...|...+..|+-.|..++|...+....+.- +-...-+--+
T Consensus 319 g~YYl~i~k~seARry~SKat-----------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKAT-----------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHh-----------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 988888999999999987543 33443 5689999999999999999999998887651 2222222334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS--GLV---P-DVITYNTFVASY 718 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~~l~~~~ 718 (793)
.--|.+.++++.|.++|.+.... .+.|+...+.++-.....+.+.+|..+|+..++. ... + -..+++.|+.+|
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 45578899999999999999876 3557888999988888899999999999998841 111 1 235689999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+.+++++|+..+++.+.. .+.+..++.+++..|...|+++.|++.|.+++-+.|++..
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 9999999999999999985 3557999999999999999999999999999999998743
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-11 Score=115.76 Aligned_cols=382 Identities=14% Similarity=0.061 Sum_probs=264.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 003829 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTW- 457 (793)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 457 (793)
+...|...+-...-.+.+.|....|+..|.+.+.. .+-.-..|..|.... .+.+.+..+ ... ...|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~~-l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VVG-LPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hhc-CcccchHHH
Confidence 34455555554555566788889999988887764 233334444443332 222222221 111 11111111
Q ss_pred -HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 003829 458 -NTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAAL 534 (793)
Q Consensus 458 -~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 534 (793)
-.+..++......+++.+-.+.....|++.+...-+....+.....++++|..+|+++.+.++- -|..+|..++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-
Confidence 1233556666678888888888888888766666666666777888999999999999987432 256677666633
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIY 613 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 613 (793)
+..+. .+.++.+-.-.-.+-.+.|...+.+-|+-.++.++|+.+|+..+. +.| ....|+.++.-|
T Consensus 309 -~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----------LNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 309 -KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----------LNPKYLSAWTLMGHEY 374 (559)
T ss_pred -HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------cCcchhHHHHHhhHHH
Confidence 32221 122222211110133456667777888888899999999886543 344 356788888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
....+...|.+.++..++.+ |-|...|-.|..+|.-.+...=|+-+|++..+.. +.|...|.+|+.+|.+.++.++|.
T Consensus 375 vEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999886 7788999999999999999999999999999862 446889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK----QGCKPN--QNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
+.|.++...|-. +...|..|+..|-+.++.++|...+++.++ .|...+ .....-|+.-+.+.+++++|..+..
T Consensus 453 KCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999999986544 568899999999999999999999998876 232222 3333446777889999999999888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHh
Q 003829 768 NLSKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 768 ~~~~~~~~~~~~~~~~l~~~l~ 789 (793)
.+..-+++ -..-..|+..++
T Consensus 532 ~~~~~~~e--~eeak~LlReir 551 (559)
T KOG1155|consen 532 LVLKGETE--CEEAKALLREIR 551 (559)
T ss_pred HHhcCCch--HHHHHHHHHHHH
Confidence 88877443 223334444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=126.81 Aligned_cols=403 Identities=13% Similarity=0.065 Sum_probs=232.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcC
Q 003829 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPD-KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI-VTYNSLISAYARDG 363 (793)
Q Consensus 286 ~~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g 363 (793)
..-|.+.|.+++|++++.+.+.. .|| .+.|.....+|...|+++++.+.-.+.++ +.|+- ..+..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 34488899999999999999987 567 77888899999999999999988888876 44543 36666777888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhc--------
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS-AG--CKPNICTFNALIKMHGNR-------- 432 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~-------- 432 (793)
++++|+.=..-.--.|.-.|..+- .++.-..+ ..|+...++-.+ .+ +-|......+....+-..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 888886433222111111111111 11111111 122223332222 12 224444333333332110
Q ss_pred CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC---------HHHHHHH
Q 003829 433 GN-----FVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFIPE---------RDTFNTL 495 (793)
Q Consensus 433 g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~---------~~~~~~l 495 (793)
++ ..++.+.+..-. ...+.++...+.+-... ....+ ..+...-
T Consensus 273 ~~ksDa~l~~~l~~l~~~~--------------------~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGL--------------------EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred CccchhhHHHHHHHHHhhC--------------------chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 00 111111111111 11233333333221110 00001 1122222
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
...+.-.|+.-.|.+-|+..++.... +...|-.+..+|....+.++-...|++..+.+ +-++.+|..=.+.+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 22344567778888888888877554 23336666667888888888888888877653 33566666666666666677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 654 (793)
++|+.-|++..+ +.| +...|.-+..+..+.++++++...|++.++. +|..+.+|+.....+...+++
T Consensus 411 e~A~aDF~Kai~-----------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 411 EEAIADFQKAIS-----------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHhh-----------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 777766655332 233 3455666666666777778888888777765 566777777777777777788
Q ss_pred HHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIKPD-------I--ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 724 (793)
++|.+.|+..+.. .|+ . .+...++- +-..+++..|..++.++++ +.|. ...|..|+..-.+.|+.
T Consensus 479 d~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 479 DKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhH
Confidence 8888888777764 222 1 11112221 1233777777777777777 4443 36677777777777777
Q ss_pred HHHHHHHHHHHH
Q 003829 725 VEALDVVRYMIK 736 (793)
Q Consensus 725 ~~A~~~~~~~~~ 736 (793)
++|+++|++...
T Consensus 554 ~eAielFEksa~ 565 (606)
T KOG0547|consen 554 DEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-12 Score=121.75 Aligned_cols=332 Identities=15% Similarity=0.116 Sum_probs=242.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--H
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD--T 491 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~ 491 (793)
+...|...+-.....+.+.|..+.|+..|...... -+..|.+.+....-..+.+.+ ..... +...|.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHH
Confidence 44556666666666777889999999999888754 233333333222222222222 11221 1221222 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-C-CCHhhHHHHHHHH
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-K-PNELTYSSLLHAY 569 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-p~~~~~~~l~~~~ 569 (793)
-..+..++-.....+++.+-.+.....|+.-+...-+....+.....++++|+.+|+++.+.+. . .|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1234455666668888998888888888876666666666677788999999999999997621 1 1556666655332
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
....++. -+.+.+. .--+-...|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+.+-|.
T Consensus 310 ~~~skLs---~LA~~v~----------~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 310 NDKSKLS---YLAQNVS----------NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYV 375 (559)
T ss_pred hhhHHHH---HHHHHHH----------HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHH
Confidence 2111111 1111111 1112345577788888999999999999999999986 556677999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
...+...|++-++.+++-. +-|-..|..++.+|.-.+...-|+-+|+++.+ ++| |...|.+|+.+|.+.++.++|+
T Consensus 376 EmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999874 55889999999999999999999999999999 555 7799999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+.|+.++..| ..+...+..|+..|-+.++.++|..++++.++.
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999865 335688999999999999999999999998874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-12 Score=134.22 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=148.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhccCCHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVT-WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTF--NTLISAYSRCGSFDQA 508 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a 508 (793)
.|+++.|.+.+....+.. +.+.. |.....+..+.|+++.+.+.+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 2222334456666666666666666542 333222 2335566777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHH-HHHHcCCCHHHHHHHHHHHHh
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL-HAYANGREIDQMLALSEEIYS 587 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 587 (793)
.+.++.+.+..+. +......+...|.+.|++++|.+++..+.+.+.. +......+- .+
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a------------------- 231 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQA------------------- 231 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH-------------------
Confidence 7777777776654 6667777777777778888888888777765432 111111100 00
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 588 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+.
T Consensus 232 ------------------~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 232 ------------------WIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ------------------HHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 001111111111222333333333221 1334555555555566666666666666555553
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.++.... ++.+....++.+++.+.++...+. .| |...+..++..+.+.|++++|.+.|+++.+ ..|+...+
T Consensus 293 --~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~ 364 (398)
T PRK10747 293 --QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDY 364 (398)
T ss_pred --CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 3333211 222223345566666666655552 23 334455566666666666666666666655 34555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+...+.+.|+.++|..++++.+.+
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55666666666666666666665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=137.29 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHH-HHHHhcCCCCCCHhhHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGV--TPDLSTYNAVLAALARGGMWEQSEKI-FAEMKGGRCKPNELTYSSLL 566 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~ 566 (793)
.....+..+|...+++++|.++|+.+.+... .-+.+.|.+.+..+-+ +-++.. -+++.+. .+..+.+|-++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 3444455555555666666666665554421 1144555555443322 112222 2223332 134666777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 567 HAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 645 (793)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 645 (793)
.+|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|+|...|+..+... +-+...|-.+.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQ-----------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG 496 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQ-----------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLG 496 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhc-----------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhh
Confidence 777777777777777665432 344 45666666666677777888888888776542 22334455667
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 646 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 725 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 725 (793)
-.|.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+.+++++...+.. |+..-...+..+...++++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchH
Confidence 77888888888888888888753 335666777777888888888888888888874333 4555556667778888888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 726 EALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+|+..++++++ +.|+ ...+..++..|.+.|+.+.|+.-+--|..++|....+
T Consensus 575 eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 575 EALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 88888888887 4565 6777888888888888888888888888888876663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-09 Score=106.36 Aligned_cols=550 Identities=11% Similarity=0.105 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKD-GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
..|......+.++|++......|+..+.. .......+|...+......|-++-++.+|++.++. ++..-+--+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 45666666677777777777777765443 22233456666666666667777777777777654 23335555666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHCCCCCC--HHHHHHHH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAG------VKPDSYTFNTLISCCRRGSLHE---EAAGVFEEMKLAGFSPD--KVTYNALL 321 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~g~~~~--~~~~~~li 321 (793)
+++.+ ++++|.+.+...+... -+.+...|..+-....+.-+.- ....++..+... -+| ...|.+|.
T Consensus 179 L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 66666 6777766666654321 1234445555555554433322 222333333332 223 23566777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG----------------------LLEEAMELKTQMVEIG 379 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~g 379 (793)
+-|.+.|.+++|..+|++....- ..+.-|+.+-..|++-. +++-...-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 77777777777777777665431 12223333333333211 1222333333333321
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 380 -----------ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN------ICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 380 -----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
-+-++..+..-+. +..|+..+-...+.+++.. +.|. ...|..+.+.|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0112223322222 2356677777777777654 2222 346778888888888888888888
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 003829 443 DEINKCNCKPD---IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAG 519 (793)
Q Consensus 443 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 519 (793)
++..+...+.- ..+|......-.++.+++.|.++.+.... .|.... ..+...+..-++. +.
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~-----~~~yd~~~pvQ~r-----lh--- 474 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE-----LEYYDNSEPVQAR-----LH--- 474 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh-----hhhhcCCCcHHHH-----HH---
Confidence 88776543322 34555555555666777777776655543 222211 1222233222111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
-+...|..+++..-..|-++....+++.+++..+- ++.........+....-++++.+.|++-++ .--
T Consensus 475 --rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~---------LFk 542 (835)
T KOG2047|consen 475 --RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS---------LFK 542 (835)
T ss_pred --HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc---------cCC
Confidence 15566777777777777788888888887765432 222211122223344455666666653221 000
Q ss_pred CCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHHHHCCCCCC-
Q 003829 600 SPDI-PTLNAMISIYGR---RQMVAKTNEILHFMNDSGFTPSLTTYNTL--MYMYSRSENFARAEDVLREILAKGIKPD- 672 (793)
Q Consensus 600 ~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 672 (793)
.|++ ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+--| ...-.+.|-...|+.+++++... +++.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~ 620 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQ 620 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHH
Confidence 1232 244544443322 2367888888888887 555543332222 22234567778888888887764 3433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHH
Q 003829 673 -IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTY 746 (793)
Q Consensus 673 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~ 746 (793)
...||..|.-....--....+.+|+++++ .-||.. .....+..-++.|.++.|..+|.-..+. +.| +...|
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW 697 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHH
Confidence 34667666555444445666778888887 455553 3345555666778888888888777654 455 35566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
...-..=.+.|+ .+.+++|++.
T Consensus 698 ~twk~FEvrHGn----edT~keMLRi 719 (835)
T KOG2047|consen 698 DTWKEFEVRHGN----EDTYKEMLRI 719 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHH
Confidence 666666667777 3344444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-10 Score=117.28 Aligned_cols=518 Identities=12% Similarity=0.047 Sum_probs=303.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVY---GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~---~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
.+..++++.-+......+...+..++..+-.++ ...+ +.+++ .++..+.+ .+....+.++
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~-~Lllli~e---------------s~i~Re~~~d 302 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV-ILLLLIEE---------------SLIPRENIED 302 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH-HHHHHHHh---------------hccccccHHH
Confidence 345566666666666665555555555544332 2223 23333 22221111 1222233333
Q ss_pred HHHH----HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 298 AAGV----FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 298 A~~~----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+.-. +.++....+..|...|..|.-+...+|+++.+-+.|++.... ..-....|+.+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3322 222333334567888888888888889999999999887553 33456688888888888898888888888
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 003829 374 QMVEIGITPD-VFTYTTLLSGFE-KAGKDESAMKVFEEMRSA--GC--KPNICTFNALIKMHGNR-----------GNFV 436 (793)
Q Consensus 374 ~m~~~g~~~~-~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~ 436 (793)
.-....-.|+ ...+...-..|. +.+.+++++.+-.+++.. +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665432343 333333334444 457777777776666651 11 12234444444444321 1234
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 516 (793)
++++.+++..+.+. -|+...-.+.--|...++.+.|.+..++..+.+...+...+..|.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56666776665542 23333333334456667777777777777776555567777777777777777777777777765
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHH
Q 003829 517 EA-GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595 (793)
Q Consensus 517 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (793)
+. |. |......-+..-..-|+.+++......+...- -+..... ..++-....++...+ .+.
T Consensus 541 ~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q-------~~~~~g~~~~lk~~l-------~la 602 (799)
T KOG4162|consen 541 EEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQ-------QTLDEGKLLRLKAGL-------HLA 602 (799)
T ss_pred HHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHh-------hhhhhhhhhhhhccc-------ccC
Confidence 53 11 11111111222233566666666665554310 0000000 000000000000000 000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 596 KKGFSPDIPTLNAMISIYGRRQ---MVAKTNEILHFMNDSGFTPS------LTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 596 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
.........++..+.......+ ..+.. +...... ..|+ ...|......+.+.++.++|...+.+..+
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 0000111222322222211111 11111 1111110 0122 23456677788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCC-C
Q 003829 667 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALD--VVRYMIKQGCKP-N 742 (793)
Q Consensus 667 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~ 742 (793)
. .+-....|...+..+...|.+++|.+.|...+. +.|+. .....++.++.+.|+..-|.. ++..+++. .| +
T Consensus 679 ~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n 753 (799)
T KOG4162|consen 679 I-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLN 753 (799)
T ss_pred c-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCC
Confidence 6 344567788888889999999999999999998 77765 778999999999998777777 99999985 45 5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 743 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 784 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 784 (793)
...|..++..+.+.|+.++|.+-|..+.++++.++..-|..+
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i 795 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI 795 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence 899999999999999999999999999999988887665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-12 Score=132.62 Aligned_cols=295 Identities=11% Similarity=0.059 Sum_probs=183.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 430 GNRGNFVEMMKVFDEINKCNCKPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 430 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.+.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777666554 2332 233334456666677777777777766543222222333345666667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
.+.++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+..+-.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~--------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH---------------------
Confidence 7777777766544 5556666666777777777777777776655321 2221111110
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 589 RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
..+..+ ...+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++..
T Consensus 230 ---------------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 230 ---------------KAEIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred ---------------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 000000 11111222223333333321 12477888888889999999999999999999
Q ss_pred HCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 666 AKGIKPDIIS---YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DV--ITYNTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 666 ~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
+.. ||... ...........++.+.+.+.+++..+ ..| |. .....+++.+.+.|++++|.+.|++......
T Consensus 291 ~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 291 KKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred hhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 863 33321 12222233445778889999988887 344 34 5667899999999999999999995333335
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 740 KPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 740 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.|+...+..++..+.+.|+.++|.+++++.+..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888889999999999999999999987654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-15 Score=145.04 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=94.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCC
Q 003829 495 LISAYSRCGSFDQAMSIYKRMLEAG-VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR 573 (793)
Q Consensus 495 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 573 (793)
+...+.+.|++++|+++++...... ...+...|..+.......++.+.|...++++...+ +-+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555556666666666664433332 12233444444445555666666666666665543 1134444444444 4566
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccC
Q 003829 574 EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSLTTYNTLMYMYSRSE 652 (793)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 652 (793)
++++|..+++.... ..++...+...+..+.+.++++++.++++.+.+.. .+.+...|..+...+.+.|
T Consensus 92 ~~~~A~~~~~~~~~-----------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 92 DPEEALKLAEKAYE-----------RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccc-----------cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 66666666543221 12334445556666667777777777777765432 2456677777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 653 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 732 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (793)
+.++|+..++++++.. +.|......+++.+...|+.+++.++++...+.. ..|...+..++.+|...|++++|+.+++
T Consensus 161 ~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 8888888888888752 2246677777888888888888777777776642 2244556777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 733 YMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 733 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
+..+.+ +.|......+++++...|+.++|..+.+++.+
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccc
Confidence 877642 33677777888888888888888888777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-09 Score=105.86 Aligned_cols=485 Identities=11% Similarity=0.102 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLA-GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 358 (793)
..|...+....++|++...+..|+..+.. .+.-....|...+......|-++-+..++++.++- ++..-...|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555555566667777777777766554 12222345666666666666777777777777542 33445566666
Q ss_pred HHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDES---AMKVFEEMRSAGCKPN--ICTFNALIK 427 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~ 427 (793)
+++.+++++|.+.+...+... .+.+...|..+-...++.-+.-. ...++..+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 777777777777776665321 23333444444444444332222 22333333322 123 345677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------------CC------hHHHHHHHHHHHHcCC
Q 003829 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN----------------GM------DSEVSGVFKEMKRAGF 485 (793)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~m~~~~~ 485 (793)
-|.+.|+++.|..+|++.... ..+..-+..+..+|.+- ++ ++-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 777777777777777766543 12222222222222211 11 1122233333332211
Q ss_pred -----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 486 -----------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP------DLSTYNAVLAALARGGMWEQSEKIFA 548 (793)
Q Consensus 486 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (793)
+.++..+..-+. +..|+..+-...+.++++. +.| -...|..+...|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 112333332222 2346667777777777764 122 23567888888999999999999999
Q ss_pred HHhcCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHH--HHHHHCCCC------CCHHHHHHHHHHHHhcC
Q 003829 549 EMKGGRCKPN---ELTYSSLLHAYANGREIDQMLALSEEIYSERAF--LELKKKGFS------PDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 549 ~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~l~~~~~~~g 617 (793)
+..+...+-- ..+|..-...=.+..+++.|.++.+....-..- ...-+.+.+ .+...|...++..-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9876532211 123333333334567788888877665420000 000011111 13345666666666778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---CCHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN---GRMKEAS 693 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g~~~~A~ 693 (793)
-++....+|+++.+..+. ++.........+..+.-++++.++|++-+..=-.|+ ...|+..+.-+.+. -..+.|+
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888899998876543 334333334445556667888888887665522334 34677777665543 3678888
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
.+|+++++ |..|.. ..|...+..--+.|-...|+.+++++... +++. ...|+.++..-...=-...-+++|+++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 88888888 555543 23333333344567777788888876542 3432 345555544322222223345566666
Q ss_pred hhCCCCCCH
Q 003829 770 SKLDPHVTK 778 (793)
Q Consensus 770 ~~~~~~~~~ 778 (793)
++.=|+...
T Consensus 649 Ie~Lp~~~~ 657 (835)
T KOG2047|consen 649 IESLPDSKA 657 (835)
T ss_pred HHhCChHHH
Confidence 665555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=128.72 Aligned_cols=283 Identities=11% Similarity=0.016 Sum_probs=197.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCCHHH
Q 003829 186 EGKVSVAASLLHGLHKDGFDIDVYAYTSL-ITTYASNGRYREAVMVFKKMEEEGCKPTLITY--NVILNVYGKMGMPWNK 262 (793)
Q Consensus 186 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~~ 262 (793)
.|+++.|++.+....+... ++..+..+ .....+.|+++.|..+|.++.+. .|+.... ......+...| +++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g-~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARN-ENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC-CHHH
Confidence 6888888877776555421 22333333 34446788888888888888765 3443322 23356677777 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDK-------VTYNALLDVYGKCRRPKEAMQ 335 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 335 (793)
|...++++.+.++. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888877644 5667777778888888888888888888877543222 233444444445556666667
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 415 (793)
+++.+.+. .+.+......++..+...|+.++|.+++++..+. ++|... .++.+.+..++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 76666443 3446777888888888888888888888888774 445422 22344445688888888888887763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKR 482 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 482 (793)
+.|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346677888888888888888888888888875 68888888888888888888888888887654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-11 Score=110.79 Aligned_cols=449 Identities=11% Similarity=0.048 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
++..|+.+++--...+-.-...+-.-+..++.+.|++++|...+..+.... .++...+..|..++.-.|.+.+|..+-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 456666666544432222111111222233445566666666665555432 3444444455555555555555555544
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPN 418 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (793)
.. +.+.-.-..|...--+.|+-++-..+-+.+... . .--.+|.......-.+.+|+++++.++.. .|+
T Consensus 116 ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 116 KA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--L---EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred hC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--H---HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 32 223333333444444555555544444443321 0 11122333333334455666666665543 222
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 419 ICTFNA-LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (793)
Q Consensus 419 ~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (793)
....|. +.-+|.+..-++-+.++++.....- +.++...|.......+.=.-..|.+-.+++.+.+-.. ...+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~ 257 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIE 257 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHH
Confidence 222222 2233445555555555555554431 2223334444433333222222333333333322111 11122
Q ss_pred HHhcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcC
Q 003829 498 AYSRC-----GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (793)
Q Consensus 498 ~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (793)
-+++. ..-+.|++++-.+.+. -++....|+-.|.+.+++.+|..+.+++.-. .|-......+. +...
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aal 329 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAAL 329 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHh
Confidence 22222 2335566665555543 2334444555666777777777766665321 22222222222 2222
Q ss_pred CCH---HHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 573 REI---DQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 648 (793)
Q Consensus 573 ~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 648 (793)
|+- .+-+++.++ .|.-....+..-| +.--.++...+.-..++++++-++..+...-...|...+ .+..++
T Consensus 330 GQe~gSreHlKiAqq-----ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQ-----FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred hhhcCcHHHHHHHHH-----HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 211 111111111 1111222232222 122333444444455566666666666655333344433 355666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHH
Q 003829 649 SRSENFARAEDVLREILAKGIKPDIISYN-TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVE 726 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~ 726 (793)
+..|++.+|+++|-.+....++ |..+|. .+..+|.++++.+-|..++-++-. ..+.... ...+.-|.+.+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766665544333 333443 344666666666666655543322 1123333 333345666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 003829 727 ALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 727 A~~~~~~~~~~~~~p~~~~~ 746 (793)
|.+.|..+.. +.|+++-|
T Consensus 480 aaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHhhhHHHc--cCCCcccc
Confidence 6666666544 35555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-12 Score=130.14 Aligned_cols=286 Identities=10% Similarity=-0.002 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 337 (793)
+++.|.+.+.+..+.. |+ ...+.....+..+.|+++.|.+++.+..+..-.++....-.....+...|+++.|...+
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666655542 22 22233334455666777777777777665421111223333466667777777777777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHHHHHC
Q 003829 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYT-TLLS---GFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 338 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~---~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+... ...+. .-.. .....+..+++.+.+..+.+.
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777653 3355567777777777777777777777777765432 22221 1111 112223333333444444443
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003829 414 GC---KPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT---WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487 (793)
Q Consensus 414 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 487 (793)
.. +.+...+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+....
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 21 1366777777788888888888888888877753 33321 122222233456677777777777765322
Q ss_pred CH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003829 488 ER--DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK 551 (793)
Q Consensus 488 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 551 (793)
|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 55667888888888888888888854443446777777788888888888888888887754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-10 Score=105.45 Aligned_cols=453 Identities=14% Similarity=0.093 Sum_probs=211.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAM 369 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 369 (793)
....++..|+.+++.-...+-.-...+-.-+..++...|++++|...+.-+.++ ..++...+..|..++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHH
Confidence 334566666666655543332211112222344555666666666666665553 3445555555666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 370 ELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (793)
Q Consensus 370 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (793)
.+-.+..+ +......+.....+.|+-++-..+.+.+... ..--.+|..+....-.+.+|++++.++...
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 55443221 2222333344444556655555555554432 122233444444444566666666666554
Q ss_pred CCCCHHHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 450 CKPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYN 528 (793)
Q Consensus 450 ~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 528 (793)
.|.-...|..+ -.|.+..-++-+.++++-..+. ++.+....+..+....+.=.-..|.+-...+...+-. . .
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~----~ 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E----Y 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----c
Confidence 23333333332 3345555566666666555544 2223333343333333322222233333333332111 0 1
Q ss_pred HHHHHHHhcC-----ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCH
Q 003829 529 AVLAALARGG-----MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDI 603 (793)
Q Consensus 529 ~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (793)
..+..+++.+ .-+.|++++--+.+. -+..-..|+--|.+.+++++|..+.+++.....+..+. ..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Eyil------Kg 323 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYIL------KG 323 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHH------HH
Confidence 1222223221 235566655554432 11222334444556666666666655432100000000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.++..+.+-........-|...|+..-+.+..-|... -.++.+.+.-..++++.+.++..+... +..|...-..+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 3444555544444555556666655544432222211 223333444444566666666666554 22222222345566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
++..|++.+|.++|-++....++ |..+| ..|+++|.+.++.+-|.+++-++- -+.+ ......++..|.+.+.+=
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555443333 33333 455556666666666655544432 1112 223344555666666666
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
-|.+.|..+...+|.+
T Consensus 479 yaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhhhHHHccCCCc
Confidence 6666666666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=144.46 Aligned_cols=263 Identities=16% Similarity=0.160 Sum_probs=112.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAG-FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG 537 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 537 (793)
.+...+.+.|++++|.+++++..... .+.+...+..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655543 2334445555666777789999999999999987655 66677777777 688
Q ss_pred CChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ 617 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 617 (793)
+++++|..++.+..+. .++...+..++..+...++++++..+++.+.. ....+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--------LPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH---------T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--------ccCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999887654 35667778888889999999999998876532 3334567888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 697 (793)
+.++|++.+++..+.. |.|....+.++..+...|+.+++..+++...+.. +.|...+..++.+|...|+.++|+.+|+
T Consensus 161 ~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999874 5568889999999999999999999999888763 5566788899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 698 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+..+.... |..+...++.++...|+.++|.++++++.+
T Consensus 239 ~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred cccccccc-cccccccccccccccccccccccccccccc
Confidence 99984322 778889999999999999999999988764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=119.45 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=154.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
+.-.|+.-.|.+.|+..++....+ ...|-.+...|.+..+.++....|.+..+.+.. +..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888764332 233777778888999999999999998887654 777888888888888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSE 588 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 588 (793)
..=|++.+..... +...|..+.-+..+.++++++...|++.++. ++.-+..|+.....+...++++.|.+.|+..+..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999887554 5666766767777888999999999998875 3556778888889999999999999988876531
Q ss_pred HHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 589 RAFLELKKKGFSPDIP--TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 589 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
. -...++-.+.. +--+++..- -.+++..|..++++..+.+ +-....|..|...-.+.|+.++|+++|++...
T Consensus 492 E----~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 E----PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred c----cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00111111111 111111111 2255666666666666554 33445566666666666666666666665543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-10 Score=115.57 Aligned_cols=279 Identities=13% Similarity=0.070 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
.+......-.+-+...+++.+..++++.+.+.. ++....+-.-|..+...|+..+-..+=.+|.+.- +....+|..+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355555556666667777777777777776553 4445555555556666666666666666666653 33556676676
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
-.|...|+.++|++.|.+....+.. -...|-.+...|.-.|+.|+|...+...-+. .+-....+.-+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 6666667777777777766654322 3345666666666667777776666554432 1111112222333345555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHH
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDS----G--FTPSLTTYNTLMYMYS 649 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~ 649 (793)
.|.++|.+.. ++.| |+.+++.+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.
T Consensus 398 LAe~Ff~~A~-----------ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 398 LAEKFFKQAL-----------AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHHHHH-----------hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5555554322 2222 3445555555555555555555555554421 0 0012233455555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT 713 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 713 (793)
+.+.+++|+..+++.+.. .+-+..++.+++..|...|+++.|.+.|.+.+- +.|+..+...
T Consensus 467 kl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 555666666666555554 233455555555555555666666666655555 4554433333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=112.34 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP---DKVTYNALLDVYGKCRRPKEAMQ 335 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~ 335 (793)
+.++|+++|-+|.+.... ...+-.+|.+.|.+.|..|.|+.+++.+.+..--+ .......|..-|...|-++.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 356666666666653221 23344455566666777777777777776651000 12234456677888888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV----FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
+|..+.+.+ .--..+...|+..|-...++++|++.-+++.+.|..+.. ..|+-+...+....+++.|+.++++..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 888886653 224456777888888888888888888888877655442 345666666667788888999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 491 (793)
+.+ +..+..--.+.+.+...|++..|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+... ....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 764 2244455567788888999999999999998886666677888888899999999999988888887643 3333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhcC
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR---GGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 553 (793)
...+........-.+.|..++.+-+.+ +|+...+..++..... .|...+-...+++|...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444444445566676666665554 6888888888886653 34466666677777643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-10 Score=108.54 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 451 KPDIVTWNTLLAVF--GQNGMDSEVSGVFKEMKRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY 527 (793)
Q Consensus 451 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 527 (793)
.+...+....+.++ +..++...+...+-.+... -++-|++....+...+...|+.++|...|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 33334444444444 4456665665555444432 35567888999999999999999999999998876433 33334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC-CCHHHH
Q 003829 528 NAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS-PDIPTL 606 (793)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 606 (793)
....-.+.+.|+.++...+...+.... .-+...|..-+......+++..|+.+.++.+. +. .++..|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-----------~~~r~~~al 337 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID-----------SEPRNHEAL 337 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-----------cCcccchHH
Confidence 444445677888888888887776432 12333333333444567788888887665432 22 345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI-FAYCR 685 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 685 (793)
..-...+...|++++|.-.|+...... |-+..+|..|+..|...|.+.+|.-+-+...+. ++.+..+...++ ..+..
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 666778889999999999999988763 568899999999999999999999998888775 455666665553 33332
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 686 -NGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 -~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
..--++|.+++++.+. +.|+. ...+.++..+...|++++++.++++.+. ..||....+.|++.+...+.+++|.
T Consensus 416 dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred CchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHH
Confidence 2345889999999988 77775 5667888889999999999999999987 5789999999999999999999999
Q ss_pred HHHHHHhhCCCCCCH
Q 003829 764 TFVNNLSKLDPHVTK 778 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~ 778 (793)
+.|..++.++|++..
T Consensus 492 ~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHhcCccchH
Confidence 999999999998544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-11 Score=124.68 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=140.9
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 003829 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPD 278 (793)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~ 278 (793)
+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-+..+.+...++.++.+....+ +.+.+. .|-
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EPL 82 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CCc
Confidence 334455566666666666666666665555 5555555544445555666665555555 333322 345
Q ss_pred HHHHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 279 SYTFNTLISCCRRGSLHEE-----------------------AAGVFEEMKL-AGFSPDKVTYNALLDVYGKCRRPKEAM 334 (793)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~-----------------------A~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 334 (793)
..||..|..+|.+.||... -..++..+.- .++-||.. ..+....-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 5566666666666665443 1121111110 01112221 1112222233334444
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 335 QVLREMKINGCLPSIVTYNSLISAYAR-DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+++..+...... . .+...++-... ...+++-..+.+...+ .++..+|..++......|+++.|..++.+|.+.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444333111000 0 11111222222 2334555554444443 578888999999888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 003829 414 GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGM 469 (793)
Q Consensus 414 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 469 (793)
|++.+...|-.|+-+ .++..-+..+++.|...|+.|+..|+...+..+..+|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 988888877777755 77888888888888889999999998888777777655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-10 Score=121.63 Aligned_cols=491 Identities=13% Similarity=0.102 Sum_probs=248.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 003829 230 VFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG 309 (793)
Q Consensus 230 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 309 (793)
++..+...|+.|+.+||..++.-||..| +.+.|- +|.-|.-....-+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4445555666666666666666666666 555555 6665555555555556666666665555555444
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHH
Q 003829 310 FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE-IGITPDVFTYT 388 (793)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~ 388 (793)
.|-..+|..|..+|...||+.. ++..++ ....++..+...|....-..++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 3455566666666666666543 111111 011122223333333333333332211 11223322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 003829 389 TLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN-RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (793)
Q Consensus 389 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (793)
+.+......|-++.+.+++..+...... ..... +++-... ...+++-..+.+...+ .+++.+|..++..-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 2333344445555555555444322111 01111 1222221 1223333333332222 57888888888888889
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 468 GMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIF 547 (793)
Q Consensus 468 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 547 (793)
|+.+.|..++.+|.+.|++.+.+.|..|+-+ .++...+..++..|.+.|+.|+.+|+...+..+.+.|....+
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999999988888888887655 778888888888888889999999888887777765542211
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHH---HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 548 AEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERA---FLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNE 624 (793)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 624 (793)
+.+.+ ....+++-..+-.-.| ..|.+..+.-..... +....-.|+.....+|...... ..+|.-++...
T Consensus 291 ----~e~sq-~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 ----EEGSQ-LAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQ 362 (1088)
T ss_pred ----ccccc-hhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHH
Confidence 11211 1111111111111112 222222222111100 1111112222222333332222 22444444443
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHH-------------------c---cCCHHHHHHHHHHHHH------------C
Q 003829 625 ILHFMNDS---GFTPSLTTYNTLMYMYS-------------------R---SENFARAEDVLREILA------------K 667 (793)
Q Consensus 625 ~~~~~~~~---~~~~~~~~~~~l~~~~~-------------------~---~g~~~~A~~~~~~~~~------------~ 667 (793)
+...+..- .-..++..|..++.-|. . ..+..+..+.+..... .
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST 442 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH
Confidence 33333211 00111222221111111 1 1112222222211110 0
Q ss_pred ----CCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 668 ----GIKP-------DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 668 ----~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+.+ -...-+.++..++...+..+++..-++.... ..+ ..|..|+.-++...+.+.|..+..+...
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 0000 1123345556666666666666544443332 221 5688999999999999999999988763
Q ss_pred c--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 737 Q--GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 737 ~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
. .+.-|..-+..+.+.+.+.+....+.++++++.+.
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 2 23335566788888899999999999999998885
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-11 Score=109.97 Aligned_cols=272 Identities=17% Similarity=0.140 Sum_probs=186.4
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcC
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG-FDI--DVYAYTSLITTYASNG 222 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g 222 (793)
++.+++|.+.|..+.+ ..+.+..+...+.+.+.+.|..+.|+.+.+.+.+.. .+. ...+.-.|..-|...|
T Consensus 48 s~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 4577888999888876 233477778888888889999999999988877652 111 1234556777788889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCCCHHHH
Q 003829 223 RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSY----TFNTLISCCRRGSLHEEA 298 (793)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A 298 (793)
-+|+|..+|..+.+.+ .--..+...|+..|.... +|++|++.-+++.+.+-.+... -|.-+...+....+++.|
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999998887653 334557778888888887 8899988888888776554322 333444444556778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 299 AGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 299 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888877763 22344444566777888888888888888877654444556777788888888888888888887775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 379 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
.. +...-..+........-.+.|...+.+-+.+ .|+...+..++....
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 32 3333333444444445556666665555544 577777777776654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-09 Score=108.84 Aligned_cols=419 Identities=13% Similarity=0.109 Sum_probs=213.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
+-++|........+.++. ..+.|..+.-.+....++++|++.|......+ +-|...+.-|.-.-.+.|+++.....-.
T Consensus 56 ~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 56 KKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred chHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444444444444443332 33444444444444455555555555555443 2234444444444445555555544444
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHH
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-ITPDVFTYTTLL------SGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~ 411 (793)
...+. .+.....|..++.++.-.|+...|..++++..+.- ..|+...|.... ....+.|..++|.+.+..-.
T Consensus 134 ~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 134 QLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 44432 22233455555555555555555555555555442 123333322211 22334555555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCChHHHH-HHHHHHHHcCCCCCH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL-AVFGQNGMDSEVS-GVFKEMKRAGFIPER 489 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~m~~~~~~~~~ 489 (793)
.. +......-..-...+.+.+++++|..++..++.. .||...|...+ .++.+-.+.-++. .+|....+. ++...
T Consensus 213 ~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e 288 (700)
T KOG1156|consen 213 KQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE 288 (700)
T ss_pred hH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc
Confidence 22 1112222333445555666666666666666655 34444444333 3332222222332 444444332 11000
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHhcCC----------C
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI----FAEMKGGR----------C 555 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~----------~ 555 (793)
.....-+.......-.+..-+++..+.++|+.+-.. .+...|-.-...+-..++ ...+...+ -
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 001111111111222334445555666666553222 222222211111111111 11111110 1
Q ss_pred CCCHhh--HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 556 KPNELT--YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDS 632 (793)
Q Consensus 556 ~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 632 (793)
+|+... +..++..+-..|+++.|..+.+..+ +..|+ +..|..-.+.+.+.|++++|..++++..+.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-----------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-----------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-----------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 444443 4456778889999999999987643 34565 346667778999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--------HHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 003829 633 GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII--------SYNTV--IFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 633 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
+ .+|...-.--+.-..+.++.++|.++.....+.|. +.. .|-.+ +.+|.+.|++..|++-|..+.+
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6 56666655667777889999999999999998763 221 22222 3578888888888777666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-12 Score=129.22 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGC--KPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
..+|...|+.+... ...+.++...++++|...+++++|.++|+.+.+..+ .-+...|.+.+.-+.+ +-++..
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHHH
Confidence 34566666653333 222445556666666666666666666666655421 1244555555544422 111111
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 267 V-EGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 267 ~-~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
+ +.+.... +-...+|.++..+|.-+++++.|++.|++..+. .| ...+|+.+..-+....++++|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 1 1122211 113556666666666666666666666666655 23 4556666666666666666666666665432
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNA 424 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 424 (793)
.+.+--+|.-+...|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.|+|+++++++...... |...--.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 11122244455566666666666666666666543 234455555556666666666666666666554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 486 (793)
.+..+...+++++|+..++++.+. ++.+...+-.+...|-+.|+.+.|+.-|.-+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 444555566666666666666554 1233455556666666666666666666666555433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-08 Score=102.30 Aligned_cols=603 Identities=13% Similarity=0.110 Sum_probs=350.3
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYR 225 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (793)
.+.+...+++.+.+.+ .++....+.++..-.+...|+-++|....+..++.++. +..+|..++-.+....+++
T Consensus 20 ~kQYkkgLK~~~~iL~------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHhHHHHHHHHHH------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHH
Confidence 4567777888887776 23335566677777777889999999999988876655 6778888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 226 EAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM 305 (793)
Q Consensus 226 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 305 (793)
+|++.|..+..-+ +.|...|.-+.-.-.+.+ +++.....-.+..+..+. ....|..+..++.-.|++..|..+.++.
T Consensus 93 eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 93 EAIKCYRNALKIE-KDNLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 336667766655556666 777777777777665332 4556777888888889999999999998
Q ss_pred HHCC-CCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 306 KLAG-FSPDKVTYNAL------LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 306 ~~~g-~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.+.. -.|+...|... .....+.|.+++|++.+...... +......-.+-...+.+.|++++|..++..++..
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 8763 24555555432 23455778888888888776443 2212223345667788999999999999999987
Q ss_pred CCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 379 GITPDVFTYTTLLS-GFEKAGKDESAM-KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT 456 (793)
Q Consensus 379 g~~~~~~~~~~li~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 456 (793)
.||..-|...+. ++.+..+.-++. .+|....+.-.. .......=+.......-.+..-+++....+.|+++-
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v--- 322 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV--- 322 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---
Confidence 566665555444 443333333333 666665543111 000000001111111112333444555556554432
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH----HcC----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMK----RAG----------FIPERD--TFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
+..+...|-.....+-..++.-.+. ..| -+|... ++..++..+-+.|+++.|..+++..+..-+
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence 2223322222221111111111111 111 123332 456677788889999999999998887622
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 521 TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 521 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
. -++.|..-.+.+...|++++|...+++..+.+ .+|...-.--..-..+.++.++|.++...+.... . |..
T Consensus 403 T-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~------~-~~~ 473 (700)
T KOG1156|consen 403 T-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG------F-GAV 473 (700)
T ss_pred h-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc------c-chh
Confidence 2 23445555577888899999999999888754 3444433344445567788888888776544211 0 111
Q ss_pred CCH---H-HHH--HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHH----------HHHHHHHHccC-------
Q 003829 601 PDI---P-TLN--AMISIYGRRQMVAKTNEILHFMNDS-----GFTPSLTTY----------NTLMYMYSRSE------- 652 (793)
Q Consensus 601 ~~~---~-~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~----------~~l~~~~~~~g------- 652 (793)
.+. . +|- .-+.+|.++|++..|++-|..+.+. .-.-|-.+| -.|+...-...
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~ 553 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLR 553 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHH
Confidence 111 1 111 1234677777777777665555432 012233333 22332211111
Q ss_pred CHHHHHHHHHHHHHCC-C-CCCHHHHHHHH----HHHHHc-CCHHHHHHHHHHHH---------HCCCC--CCHHHHHHH
Q 003829 653 NFARAEDVLREILAKG-I-KPDIISYNTVI----FAYCRN-GRMKEASRIFSEMR---------DSGLV--PDVITYNTF 714 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~~---------~~~~~--p~~~~~~~l 714 (793)
-...|+++|=.|.... . .+.......|- ....+. .+-..|.+--+.+. +.|.. +|.. .+
T Consensus 554 Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~ 630 (700)
T KOG1156|consen 554 AAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PF 630 (700)
T ss_pred HHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---ch
Confidence 1345666666666531 0 00111111111 111000 11112222111111 11222 3332 45
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 715 VASYAADSL-FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 715 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..+.+..+ .++|.+++..+...+ +.+..+|..-...|.+.|++.-|...++++....+..+.
T Consensus 631 gekL~~t~~Pl~ea~kf~~~l~~~~-~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~~~~~ 694 (700)
T KOG1156|consen 631 GEKLLKTEDPLEEARKFLPNLQHKG-KEKGETYILSFELYYRKGKFLLALACLNNAEGIHGTHPS 694 (700)
T ss_pred hhhHhhcCChHHHHHHHHHHHHHhc-ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Confidence 556666655 788999999887764 556788888888899999999999999998888766544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-10 Score=110.80 Aligned_cols=294 Identities=12% Similarity=0.115 Sum_probs=149.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 511 (793)
.|++.+|++...+..+.+ ......|..-..+..+.|+.+.+-.++.+..+.-..++..............|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666665544443 1223334444455556666666666666665543333444555555666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHH
Q 003829 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAF 591 (793)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 591 (793)
.+++.+.+.. ..........+|.+.|++.+...++.++.+.+.-.+... ..+
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 7777666555 556666666777777777777777777766553322211 000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 003829 592 LELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP 671 (793)
Q Consensus 592 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 671 (793)
...+|..+++-....+..+.-...++..-.. ...++..-..++.-+.++|+.++|.++.++..+.+..|
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 0112222222222222233322333333222 12334444445555555555555555555555554443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+. .....+.+-++.+.-.+..++-.+.-.. ++..+.+|+..|.+.+.+.+|.++++..++ ..|+..+|+.+++
T Consensus 297 ~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~ 369 (400)
T COG3071 297 RL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELAD 369 (400)
T ss_pred hH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHH
Confidence 31 1112233444444444444444442111 234555566666666666666666665554 3455566666666
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 003829 752 GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~ 772 (793)
++.+.|+..+|....++.+..
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 666666666666665555533
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-10 Score=109.35 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLR 338 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 338 (793)
+|..|+++..+..+.+-. ....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-++
T Consensus 99 ~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 677777777776666543 2334555555666778888888888888776334566667777788888888888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 339 EMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV-------FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 339 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
++.+.+ +.+.........+|.+.|++.+...++..|.+.|.--|. .+|..++.-....+..+.-...++...
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 887763 336677788888888888888888888888888765554 355666666666666666566666655
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 412 SAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT 491 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 491 (793)
.+ .+.++..-.+++.-+..+|+.++|.++.++..+++..+. -...-.+.+-++.+.-++..+.-.+... .+...
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CChhH
Confidence 43 345677777888888899999999999998888765555 2222344566777777777777666533 35678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 492 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
+..|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+.++|.++.++....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888999999999999999999977765 678899999999999999999999998887643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=117.06 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=202.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
-+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-..|.+..+...|+.++.+.+. .++-++...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld----------~fP~~VT~l 293 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----------SFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----------cCCchhhhh
Confidence 356778888999999999999888776 67778888888999999999999888776432 234456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+.+.+-..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+++++.|+. +...|+.+.-+|...
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 777888888999999999999999875 678888888888899999999999999999999865 888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
+++|-++.-|++++..--.|+. .+|..+.......|++.-|.+.|+-++..+ ......++.|+-.-.+.|+.++|+.
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999999875444443 688899999999999999999999988643 2247889999988889999999999
Q ss_pred HHHHHhhCCCCCCHHHHH
Q 003829 765 FVNNLSKLDPHVTKELEC 782 (793)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~ 782 (793)
+++.+....|+--+.+++
T Consensus 451 ll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 451 LLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHhhhhCccccccccc
Confidence 999999999986665544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-08 Score=102.71 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
...+|..+..+-.+.|.+.+|.+-|-+. .|+..|...++...+.|.+++-.+++..+.++.-.|... ..|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4567777888878888888887766542 466778888888888888888888888777765444433 46777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 761 (793)
+|++.++..+-.+++ ..|+......++.-|...|.++.|.-+|... .-|..|+..+...|++..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 788887776655443 3445555556666666666665554444332 223444444445555555
Q ss_pred HHHHHHHH
Q 003829 762 AITFVNNL 769 (793)
Q Consensus 762 A~~~~~~~ 769 (793)
|+...+++
T Consensus 1239 AVD~aRKA 1246 (1666)
T KOG0985|consen 1239 AVDAARKA 1246 (1666)
T ss_pred HHHHhhhc
Confidence 54444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-08 Score=107.37 Aligned_cols=611 Identities=11% Similarity=0.013 Sum_probs=322.8
Q ss_pred hHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 149 TDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAV 228 (793)
Q Consensus 149 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (793)
...|+..|-...+ .++. -.-+|..+...|....+...|.+.|+.+.+.+.. +...+......|++...++.|.
T Consensus 474 ~~~al~ali~alr---ld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred HHHHHHHHHHHHh---cccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHH
Confidence 4455555544433 2222 3346777777777777778888888877766544 6677888888888888888888
Q ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003829 229 MVFKKMEEEGCK-PTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKL 307 (793)
Q Consensus 229 ~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 307 (793)
.+.-..-+.... .-...|-.+.-.|.+.+ +...++.-|+...+..+. |...|..++.+|.+.|++..|.++|.+...
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 874444332110 01122333444455666 778888888887776655 677888888888888888888888888776
Q ss_pred CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 003829 308 AGFSPDK-VTYNALLDVYGKCRRPKEAMQVLREMKIN------GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE--- 377 (793)
Q Consensus 308 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 377 (793)
. .|+. ..-.-.....|..|.+.+|+..+..+... +..--..++..+...+.-.|-..+|.+.+++-++
T Consensus 625 L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 L--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred c--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5 3332 22222334456778888888888776542 1111122343344444444444444444444332
Q ss_pred ----cCCCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHHCCCCC--------------------CHHHHHHHH
Q 003829 378 ----IGITPDVFTYTTLLSGFEKAGKDE------SAMKVF-EEMRSAGCKP--------------------NICTFNALI 426 (793)
Q Consensus 378 ----~g~~~~~~~~~~li~~~~~~g~~~------~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~ 426 (793)
.....+...+..+-.+|.-.-..+ ....++ .+....+..+ +..+|..++
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 211112222222222111000000 000111 1111111111 122233333
Q ss_pred HHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 427 KMHGN--------RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 427 ~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
..|.+ ..+...|+..+.+.++.. .-+..+|+.|.-. ...|.+.-+..-|-.-.... +....+|..+...
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence 22221 112235666666554431 2245556655544 45555555555554433332 2245567777777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCCCCHhhHHHHHHHHHcCCC
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMK----GGRCKPNELTYSSLLHAYANGRE 574 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~~~ 574 (793)
+....+++.|...|.......+. +...|..........|+.-++..+|..-- ..|--++..-|..........|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 88888999999999988876544 55666555555566788888888887621 12333444444444445566777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHH
Q 003829 575 IDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYN----TLMYMYS 649 (793)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~ 649 (793)
.++-+...+.+.+-.....---.+.+.+...|...+...-+.+.+++|.+...+.... ...-+...|+ .+...++
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 7777666665544222222223455666778888887777777777777766654421 0112333343 2334445
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDV-ITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A 727 (793)
..|+++.|..-+...... .+..+-.+-+.. .-.|+++++.+.|++++.- +-..|. .....++.+....+..+.|
T Consensus 1019 slgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1019 SLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred hhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHH
Confidence 556666554433322211 111111111111 2346677777777776651 112222 2334444555555556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-------------------------------------HHHHHccCCHHHHHHHHHHHh
Q 003829 728 LDVVRYMIKQGCKPNQNTYNSI-------------------------------------VDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 728 ~~~~~~~~~~~~~p~~~~~~~l-------------------------------------~~~~~~~g~~~~A~~~~~~~~ 770 (793)
...+-+.+... +++..+...| -..|.+.|+-....+.+++.+
T Consensus 1095 ~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~ 1173 (1238)
T KOG1127|consen 1095 QFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAV 1173 (1238)
T ss_pred HHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555544321 2222111111 112556777777778888888
Q ss_pred hCCCCCCHH
Q 003829 771 KLDPHVTKE 779 (793)
Q Consensus 771 ~~~~~~~~~ 779 (793)
.-+|.++..
T Consensus 1174 h~~P~~~~~ 1182 (1238)
T KOG1127|consen 1174 HSNPGDPAL 1182 (1238)
T ss_pred hcCCCChHH
Confidence 888876553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-08 Score=101.26 Aligned_cols=510 Identities=14% Similarity=0.076 Sum_probs=311.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTY---ASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN 261 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 261 (793)
..+..+++..-+......+...++.++..+-..+ ...|+.+++ +|....+....|....+.+++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 4555666666666666666655555554443332 234555555 444444333333322222211111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ -....|+.+...|...|.-..|..++++-.
T Consensus 309 ---~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 309 ---LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred ---HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 0111222222345788888888888999999999999999887533 356788899999999999999999999876
Q ss_pred HcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcC--C--CCCHHHHHHHHHHHHHc-----------CCHHHHH
Q 003829 342 INGCLPSIVTYNSLI-SAYA-RDGLLEEAMELKTQMVEIG--I--TPDVFTYTTLLSGFEKA-----------GKDESAM 404 (793)
Q Consensus 342 ~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g--~--~~~~~~~~~li~~~~~~-----------g~~~~a~ 404 (793)
.....|+..+-..++ ..|. +.|.+++++++..+.+... . ......|..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 654335444433333 3333 4578889888888877631 1 12233444444444321 2235677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 405 KVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
+.+++..+.+.. |..+...+.--|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+.-
T Consensus 465 qale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 888888876533 4444444555678889999999999999998778899999999999999999999999998877642
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCHhhH
Q 003829 485 FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG--RCKPNELTY 562 (793)
Q Consensus 485 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~ 562 (793)
..|-.....-+..-...++.+++......+... |...- .....|+-....+....+.-. ...-...++
T Consensus 544 -~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 544 -GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred -hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 112222222222233356666666665554431 00000 000111111222222222111 011112222
Q ss_pred HHHHHHHH-c--CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 563 SSLLHAYA-N--GREIDQMLALSEEIYSERAFLELKKKGFSPD------IPTLNAMISIYGRRQMVAKTNEILHFMNDSG 633 (793)
Q Consensus 563 ~~l~~~~~-~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 633 (793)
..+..... + .-..+..+.-+. ... .|+ ...|......+.+.+..++|...+.+.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~-----------~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSST-----------VLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred HHHHHHHHhhhhhcccccccCccc-----------ccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 22222111 1 111111111100 000 111 2345566667778888888888888877653
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASR--IFSEMRDSGLVPDVIT 710 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~ 710 (793)
+-....|......+...|..++|.+.|...... .|+ +.+..+++.++.+.|+-.-|.+ ++..+++.+.. +...
T Consensus 681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~ea 756 (799)
T KOG4162|consen 681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEA 756 (799)
T ss_pred -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHH
Confidence 566777888888888889999999999888874 444 5677888888988888777777 88888884333 5688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
|..++..+.+.|+.++|.+.|..+.+
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999998876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-09 Score=105.73 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=51.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
+-+...|++++|.+...++...+ +-+...+..-+-+..+.+.+++|+.+.+.-.. ...+..-+.--+.+..+.++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 33444555555555555555543 22334444444445555555555543332210 0000001011122233455555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 367 EAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
+|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.+.
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5555554 1221 2223333344455555555555555555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-08 Score=99.28 Aligned_cols=549 Identities=12% Similarity=0.149 Sum_probs=292.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--------CCCCHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG--------FDIDVYAYTSLITT 217 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~ 217 (793)
-|+.+.|.+-.+.+.+ ..+|..+.+.|.+.++++.|.-.+-.|.... ...+...-..+...
T Consensus 741 iG~MD~AfksI~~IkS-----------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-----------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred eccHHHHHHHHHHHhh-----------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 4677777776666543 4578888888888888887766554442110 00011111122223
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
....|.+++|..+|++-++ |..|=..|...| .|++|.++-+.--+.. -..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 3467889999999988875 344555677778 8999988877533221 23455555555666788888
Q ss_pred HHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003829 298 AAGVFEEMKL----------AG---------FSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISA 358 (793)
Q Consensus 298 A~~~~~~~~~----------~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 358 (793)
|+++|++... .. -..|...|.-....+-..|+++.|+.+|....+ |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 8888765321 10 011222333333334456777777777765532 4556667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG--------CKPNICTFNALIKMHG 430 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 430 (793)
.|-.|+.++|-++-++- | |......+.+.|-..|++.+|...|.+..... -..+...+|. ....
T Consensus 948 ~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nl--al~s 1019 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANL--ALMS 1019 (1416)
T ss_pred EeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH--Hhhc
Confidence 77778888877765542 2 55566667788888888888888777654210 0001111110 0011
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH--------HH--HcCCCCCHHHHHHHHHHHh
Q 003829 431 NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE--------MK--RAGFIPERDTFNTLISAYS 500 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------m~--~~~~~~~~~~~~~l~~~~~ 500 (793)
...+.-.|-.+|++.- .-....+..|-+.|.+.+|+++--+ ++ +.....|+...+.....++
T Consensus 1020 ~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1222333334443321 0112233445666666666654221 11 1223346667777777788
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc-CCCCCCHh----hHHHHHHHHHcCCCH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG-GRCKPNEL----TYSSLLHAYANGREI 575 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~l~~~~~~~~~~ 575 (793)
...++++|..++-...+ |..-+. +|+..+..-..++-+.|-- .+..|+.. .+..+...|.+.|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 88888888877766554 222222 2333333333333333321 11233333 455667788889998
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCCCHHHHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL-------------HFMNDSGFTPSLTTYN 642 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~ 642 (793)
..|-+-|.+.-. -..-++++.+.|+.++..-+- +-+...+...++.+..
T Consensus 1162 h~AtKKfTQAGd------------------Kl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK 1223 (1416)
T KOG3617|consen 1162 HAATKKFTQAGD------------------KLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMK 1223 (1416)
T ss_pred HHHHHHHhhhhh------------------HHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHh
Confidence 888776654321 011233344445444321110 0111223445555555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF-------- 714 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------- 714 (793)
.++..|.+...++.--.+|+...+- ....|..+-.+ .|-.++|-+.+.++.+.+. ....|+.|
T Consensus 1224 ~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1224 DIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVK 1294 (1416)
T ss_pred hhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHH
Confidence 5555555544444433333333221 11111111111 1334555555555554221 11222222
Q ss_pred --HHHHHh-cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 715 --VASYAA-DSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 715 --~~~~~~-~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+..... ..+..+.++..+.|++...-+| ...|..|+..+....++..|...++++.+..|.-+...
T Consensus 1295 ~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~ 1367 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLST 1367 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhc
Confidence 222111 1255666777777876544443 46788899999999999999999999999998866543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-08 Score=101.89 Aligned_cols=290 Identities=15% Similarity=0.104 Sum_probs=144.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----C
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD-----G 363 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g 363 (793)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.++ .|..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence 44455555555555444333 111222333445555555555555555555555422 2333333333333211 1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 364 LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD-ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 364 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
+.+...++++++.+.- |.......+.-.+.....+ ..+..++..+..+|++ .+++.+-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3444555555554431 2222221111111111111 2233444444455533 23444444444443433344444
Q ss_pred HHHHhC--------------CCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 443 DEINKC--------------NCKPDIV--TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 443 ~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
..+... .-.|... ++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 333211 0123332 2344455566677777777777776665322 3556666677777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--h----hH--HHHHHHHHcCCCHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--L----TY--SSLLHAYANGREIDQM 578 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~~~~~~~~a 578 (793)
+|.+.++...+.+.. |...-+..+..+.+.|++++|.+++......+..|-. . .| .....+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 777777777766554 5556666666777777777777777766554432211 1 11 2344567777888888
Q ss_pred HHHHHHHHh
Q 003829 579 LALSEEIYS 587 (793)
Q Consensus 579 ~~~~~~~~~ 587 (793)
++.|..+..
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 777776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-10 Score=101.86 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNT-L 285 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~-l 285 (793)
|-+--+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+.. +...|+.++.+-... .|-.+||.. .
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid-QP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID-QPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc-cHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 3344467788888888888888888877765 556777888888888887 778888888777654 355555544 4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003829 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL 365 (793)
Q Consensus 286 ~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 365 (793)
...+-..++.++|.+++.+..+.. +.++.....+...|.-.++++-|+..|+++++.|.. +...|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 456667788888888888887763 345666666777777788888888888888888765 777888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDV--FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+-++.-|.+.......|+. ..|..+.......|++..|.+.|+-.+..+ ......+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8888888887766444443 345556667777888888888888777653 2356677888777788888888888888
Q ss_pred HHHhC
Q 003829 444 EINKC 448 (793)
Q Consensus 444 ~~~~~ 448 (793)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 77654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-07 Score=100.18 Aligned_cols=552 Identities=15% Similarity=0.179 Sum_probs=316.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL-----ITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
-+..++..|.+.|-...|++.+.++..- . ...+.+.+ +..|...-.++.+.+.+..|...++..+..+.-.+
T Consensus 608 Dra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 608 DRAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred cHHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3667788888888888888877765321 0 11111111 12334445678888888888888777777776666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH------------H
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKSA-----------GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEM------------K 306 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~~-----------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~ 306 (793)
..-|+..= ..+..+++|+..+.. ++.-|....-..|.+.|+.|++.+.+++-.+- +
T Consensus 685 atky~eql-g~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLk 763 (1666)
T KOG0985|consen 685 ATKYHEQL-GAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 763 (1666)
T ss_pred HHHHHHHh-CHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHH
Confidence 66666553 367777888776553 24456666666778888888888877765432 1
Q ss_pred HC---------------CCCCCHHHH------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH------------HH
Q 003829 307 LA---------------GFSPDKVTY------NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT------------YN 353 (793)
Q Consensus 307 ~~---------------g~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~ 353 (793)
+. ++.+|.+.| ...|..|.+.=++...-.+.-.+++..+. .... ..
T Consensus 764 eAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 764 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred hccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChH
Confidence 11 122222222 11233343333332222222222221111 0011 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH---------HHHHHH-H-----------H
Q 003829 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM---------KVFEEM-R-----------S 412 (793)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~---------~~~~~~-~-----------~ 412 (793)
-|+.-.-+.++.+--...++..++.|.. |..+++.|...|...++-.+-. .+..+. . +
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2233344455666666777777788754 8888999888887654432211 011111 1 1
Q ss_pred CC--------CCCCHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChH
Q 003829 413 AG--------CKPNICTFNALIKMHGNRGNFVEMM-----------KVFDEINKCNC--KPDIVTWNTLLAVFGQNGMDS 471 (793)
Q Consensus 413 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 471 (793)
+| +......|....+.+.+..+.+.-. ++.+.+..-.+ ..|+.....-+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 11 0111233444555555555544333 33344444332 346677777888999999999
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 472 EVSGVFKEMKRAG--FIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549 (793)
Q Consensus 472 ~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 549 (793)
+-+++++++.-.+ +..+...-+.|+-...+. +.....++.+++-..+.. + +.......+-+++|..+|++
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-~------ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-D------IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-h------HHHHHhhhhHHHHHHHHHHH
Confidence 9999999887432 222223334444333332 334455555554433211 1 11112222333444444433
Q ss_pred HhcC---------------------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHH
Q 003829 550 MKGG---------------------RCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNA 608 (793)
Q Consensus 550 ~~~~---------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (793)
.-.. .-...+..|..+..+-...|.+.+|++-|-+ ..|+..|..
T Consensus 1074 f~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---------------adDps~y~e 1138 (1666)
T KOG0985|consen 1074 FDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---------------ADDPSNYLE 1138 (1666)
T ss_pred hcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---------------cCCcHHHHH
Confidence 2100 0012345566666666666666666654421 346778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
+++...+.|.+++-.+++....+....|.+.+ .|+-+|++.+++.+-++++ .-||......+++-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhh
Confidence 99999999999999999988888766666655 6888999998887765543 35787788888888888898
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------------------cCCCCCHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK------------------------QGCKPNQN 744 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~p~~~ 744 (793)
++.|.-+|.... .|..|+..+...|+++.|.+..+++-. .++...+.
T Consensus 1210 y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhad 1280 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHAD 1280 (1666)
T ss_pred hHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehH
Confidence 888887775543 366777777777777777665554321 11112234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
-...|+..|...|-++|-+.+++..+-+.
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 45567777777788888887777766553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-08 Score=92.30 Aligned_cols=308 Identities=13% Similarity=0.058 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 003829 381 TPDVFTYTTLLSGFE--KAGKDESAMKVFEEMRSA-GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD-IVT 456 (793)
Q Consensus 381 ~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 456 (793)
.|+..+....+.+++ -.++...|...+-.+... -++.|......+.+.+...|+.++|+..|+.....+ |+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 333333333343333 234444444443333222 245566677777777777777777777777765432 22 222
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
.....-.+.+.|+.++...+...+....- -....|..-+......++++.|+.+-++.++.... +...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 22333444566777777777666654321 12233333344455667888888888888776443 44555545567788
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHH-HHHH-
Q 003829 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMI-SIYG- 614 (793)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 614 (793)
.|+.++|.-.|+..+... +-+...|..|+.+|...|++.+|..+.+..+. . ++.+..++..+. ..+.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-----~-----~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR-----L-----FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-----H-----hhcchhhhhhhcceeecc
Confidence 888999988888877542 33778889999999988998888877665432 1 223344444442 2222
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
...--++|..++++..+.. |.-....+.+...+...|..+.++.++++.... .||....+.|+..+...+.+++|.+
T Consensus 416 dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2233577888888877653 223445677778888889999999999988874 6788888899999988899999999
Q ss_pred HHHHHHHCCCCCCH
Q 003829 695 IFSEMRDSGLVPDV 708 (793)
Q Consensus 695 ~~~~~~~~~~~p~~ 708 (793)
.|..++. +.|+.
T Consensus 493 ~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--cCccc
Confidence 9988888 55543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-10 Score=121.05 Aligned_cols=250 Identities=12% Similarity=-0.022 Sum_probs=166.3
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS---------NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 257 (793)
+.+++|.++|+++++..+. +...|..+..++.. .+++++|...++++.+.++ .+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4578888888888887554 56667666665542 2347888888888887753 36677778878888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 258 MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVL 337 (793)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 337 (793)
++++|...+++..+.++. +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 353 -~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 -EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred -CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 788888888888877543 4566777777888888888888888888877322 2223334444566678888888888
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 003829 338 REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSAG-C 415 (793)
Q Consensus 338 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~ 415 (793)
++......+.+...+..+..++...|++++|.+.++++... .|+ ....+.+...|+..| +.|...++.+.+.. .
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88776532224455777788888888888888888887654 333 334444555666666 47777676665431 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 448 (793)
.+....+ +...|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1111112 44445556666666555 666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-07 Score=95.25 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA--------EMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 504 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
.+..+.+++....+....-...+....+......|+++.|.+++. .+.+.+.. +.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 466777777777665443334555666677788899999988888 44443333 33445555666666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
+.|..++.+.+... .....+-..-..++......-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++
T Consensus 434 ~~a~~vl~~Ai~~~---~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 434 DSASAVLDSAIKWW---RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred ccHHHHHHHHHHHH---HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHH
Confidence 66776666554311 11111111111233333344456688888888888888864 67888888888888877 677
Q ss_pred HHHHHHHHHH
Q 003829 656 RAEDVLREIL 665 (793)
Q Consensus 656 ~A~~~~~~~~ 665 (793)
+|+.+-+.+.
T Consensus 509 ka~~l~k~L~ 518 (652)
T KOG2376|consen 509 KAESLSKKLP 518 (652)
T ss_pred HHHHHhhcCC
Confidence 7777655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-10 Score=108.04 Aligned_cols=203 Identities=9% Similarity=0.050 Sum_probs=148.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL 638 (793)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 638 (793)
...+..+...+...|++++|...+++.+. . .+.+...+..+...+...|++++|.+.+++..+.. +.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~---------~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE---------H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 34455555666666667766666655432 1 12345566667777778888888888888877764 4566
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGI-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
..+..+...+...|++++|.+.++++..... ......+..+..++...|++++|...+++..+.... +...+..++..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHH
Confidence 6777788888888999999999988886422 223456777888889999999999999998884322 45678888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
+...|++++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.+..|
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999998875 234566677778888889999999998888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-10 Score=120.80 Aligned_cols=268 Identities=10% Similarity=-0.003 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC
Q 003829 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG--------MPWNKIMALVEGMKSA 273 (793)
Q Consensus 207 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--------~~~~~a~~~~~~~~~~ 273 (793)
+...|...+++.. ..+.+++|+..|++..+..+. +...|..+..++...+ .++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4454444444421 124589999999999987422 4556666665544221 1478999999999988
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 003829 274 GVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYN 353 (793)
Q Consensus 274 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 353 (793)
++. +..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 654 67788888888889999999999999999884 335677888899999999999999999999886332 333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 354 SLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (793)
Q Consensus 354 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (793)
.++..+...|++++|++.++++.....+-+...+..+..++...|+.++|...+.++... ...+....+.+...|+..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH
Confidence 455567778999999999999887642334555777888888999999999999987655 2234455666777778777
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 434 NFVEMMKVFDEINKCNC-KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 434 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
+.|...++.+.+... .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 478887777655321 1222222 44445556666666655 7777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-09 Score=105.97 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=89.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNG 687 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 687 (793)
+..+|.+.++++.|+..|.+.......|+.. .+....+++....+...-. .|.. ...-.=+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 3445555666677777766655443232211 1222334444444433322 2221 11122255666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
++..|.+.|.++++.... |...|...+.+|.+.|.+..|+.-.+..++. .|+ ...|..-+.++....+++.|.+.|
T Consensus 373 dy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777774322 4567777777777777777777777777663 444 556666666666667777777777
Q ss_pred HHHhhCCCCCCH
Q 003829 767 NNLSKLDPHVTK 778 (793)
Q Consensus 767 ~~~~~~~~~~~~ 778 (793)
+++++.+|++.+
T Consensus 450 ~eale~dp~~~e 461 (539)
T KOG0548|consen 450 QEALELDPSNAE 461 (539)
T ss_pred HHHHhcCchhHH
Confidence 777777766544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=112.41 Aligned_cols=242 Identities=18% Similarity=0.255 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CC
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEA-----GV-TPDLST-YNAVLAALARGGMWEQSEKIFAEMKGG-----R-CK 556 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 556 (793)
.++..+...|...|+++.|..+++..++. |. .|...+ .+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777788888888888777776653 21 223333 334667888899999999998887632 1 12
Q ss_pred C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 003829 557 P-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKG-FSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDS- 632 (793)
Q Consensus 557 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 632 (793)
| -..+++.|..+|.+.|++++|...++.+... +.. ..+ ..+.+ ..++.++..+...+++++|..++....+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I--~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI--YEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH--HHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 2346777888899999999999998876641 111 111 12222 23555666677777777777777655432
Q ss_pred --CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 633 --GFTPS----LTTYNTLMYMYSRSENFARAEDVLREILAKG----I--KP-DIISYNTVIFAYCRNGRMKEASRIFSEM 699 (793)
Q Consensus 633 --~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 699 (793)
-+.++ ..+++.|...|...|++++|.++++++++.. . .+ ....++.|...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 01111 2345556666666666666666666555320 1 11 1234455555555556666555555554
Q ss_pred HH----CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 700 RD----SGL-VPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 700 ~~----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.. .|. .|+. .+|..|+..|...|++++|+++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 43 122 1222 455566666666666666666555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-07 Score=96.25 Aligned_cols=571 Identities=11% Similarity=0.038 Sum_probs=330.2
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
++...|+..|-+..+.... -...|..|+..|....+..+|...|++..+.. ..+...+......|.+.. ++++|..+
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~-~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES-TWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc-cHHHHHHH
Confidence 3466677777666655332 34579999999998889999999999998865 347788999999999998 89999888
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 267 VEGMKSAGVK-PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC 345 (793)
Q Consensus 267 ~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 345 (793)
.-..-+.... .-...|..+.-.|.+.+++..|..-|+...+.. +.|...|..+..+|..+|++..|+++|.+...-
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4333322111 011123333345778899999999999998874 347889999999999999999999999988663
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH
Q 003829 346 LPS-IVTYNSLISAYARDGLLEEAMELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDESAMKVFEE-------MR 411 (793)
Q Consensus 346 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~ 411 (793)
.|+ ...--......+..|++++|++.+......- ..--..++..+...+.-.|-..++..+++. ..
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333 2222334455678899999999998876531 011112232233333333333333333333 22
Q ss_pred HCCCCCCHHHHHHHHHHHH---hcC-C-H-HHHHHHHH-HHHhCC--------------------CCCCHHHHHHHHHHH
Q 003829 412 SAGCKPNICTFNALIKMHG---NRG-N-F-VEMMKVFD-EINKCN--------------------CKPDIVTWNTLLAVF 464 (793)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~~---~~g-~-~-~~A~~~~~-~~~~~~--------------------~~~~~~~~~~l~~~~ 464 (793)
......+...|-.+.+++. ... + + .....++. +....+ ...+..+|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2221223333332222211 000 0 0 00000010 111111 112234454444433
Q ss_pred Hh----CC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 465 GQ----NG----MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 465 ~~----~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
.+ .| +...|+..++..++..- -+..+++.|.-. ...|.+.-|...|-+....... ...+|..+...+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEe
Confidence 32 11 22355666666655422 244455555444 5556777776666655544333 55667777777778
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 537 GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR 616 (793)
Q Consensus 537 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 616 (793)
..+++.|...|...+... +.+...|..........|+.-+...++..-.. --...|--++..-+..........
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~e-----l~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDE-----LCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHH-----hhccccccchhhHHHHHHHHHHhc
Confidence 888999999998887642 33566666555555567777666666654211 011222233333333333444555
Q ss_pred CCHHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHH
Q 003829 617 QMVAKTNEILHFMND---------SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK-GIKPDIISYNT----VIFA 682 (793)
Q Consensus 617 g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~ 682 (793)
|+.++-+...+.+.. .+.+.+...|...+......+.+..|.....+++.. ..+.+...|+. +...
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL 1016 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRL 1016 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 665554433333221 144667777888887777788888887777765521 01234445553 3445
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|+++..- +-..| ......++.+....|..+
T Consensus 1017 ~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1017 ELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 5666677655444332211 11111111111 124468899999999999752 11223 355677888888999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
.|...+-++..+.+..
T Consensus 1093 ~A~~lLfe~~~ls~~~ 1108 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSLSKVQ 1108 (1238)
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999998885543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-09 Score=104.73 Aligned_cols=199 Identities=12% Similarity=0.023 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 287 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 287 (793)
...+..++..+...|++++|...|+++.+.. +.+...+..+...+...| ++++|.+.+++..+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3445555555556666666666666555442 123445555555555555 555555555555544322 3334444455
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 288 CCRRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 288 ~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
.+...|++++|...+++...... ......+..+...+...|++++|...+++..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 55555555666555555554311 1123344445555566666666666666655431 223445555555666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
+|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666665554 23334444445555555566666655555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=111.77 Aligned_cols=245 Identities=17% Similarity=0.161 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Q 003829 524 LSTYNAVLAALARGGMWEQSEKIFAEMKGG-----R-CKPNELT-YSSLLHAYANGREIDQMLALSEEIYSERAFLELKK 596 (793)
Q Consensus 524 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 596 (793)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|+.+|++++.. +.....
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--REEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HHHhcC
Confidence 455666888999999999999999987643 1 1333333 334777889999999999999998752 122222
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHC--
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-----GF-TPSLTT-YNTLMYMYSRSENFARAEDVLREILAK-- 667 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 667 (793)
...+.-..+++.|...|.+.|++++|...++...+- +. .+.+.. ++.++..++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 222223457888888999999999999888776642 21 222222 567778889999999999999977643
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 668 -GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 668 -~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
-+.++ ..+++.|...|...|++++|.+++++++.. +. .+. ...++.++..|.+.+++.+|.++|.+.+
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 11222 457899999999999999999999999862 11 222 3678999999999999999999988865
Q ss_pred H----cC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 736 K----QG-CKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 736 ~----~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
. .| ..|+ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 22 1334 5789999999999999999999998887
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=105.52 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
++..+...|...|++++|++++++.+.. .|+ +..|..-+..+-..|++++|.+.++.+.+.+.. |-..-+..+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3345566677777777777777777775 444 566777777777777888877777777774333 445555566666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQ------NTY--NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+.|++++|.+.+......+..|.. ..| ...+.+|.+.|++..|...+..+.+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6777777777777777655433321 122 34556677777777777777666654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-06 Score=90.36 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
+.|..|.+.|.+.+|.+....-.. ...|......+..++.+..-+++|-++|+++.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 456778888887777654422111 22244444445555555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-09 Score=91.15 Aligned_cols=204 Identities=11% Similarity=0.008 Sum_probs=164.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 561 TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 640 (793)
+...|.-.|...|+...|...+++.++. -+.+..++..+...|-+.|..+.|.+.|++..... +.+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~----------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdV 105 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH----------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDV 105 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccch
Confidence 3445666788888888888888776541 13345688888889999999999999999998875 667888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASY 718 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 718 (793)
.|.....+|..|.+++|...|++....-.-+ -..+|..++.|..+.|+.+.|.++|++.++ ..|+ ..+...+....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLH 183 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHH
Confidence 8999999999999999999999998752222 256888999999999999999999999998 4443 36778888899
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+.|++..|..++++....+ .++..+....+..-.+.|+.+.|.++=..+.+.-|...+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999987765 478777777777778889999999988888888887544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=101.13 Aligned_cols=220 Identities=9% Similarity=-0.084 Sum_probs=123.3
Q ss_pred CChHHHHHHHHHHhcCC-CCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 538 GMWEQSEKIFAEMKGGR-CKP--NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYG 614 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 614 (793)
+..+.++.-+.+++... ..| ....|..+...+...|+.++|...|++.+. . -+.+...|+.+...+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~---------l-~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA---------L-RPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------c-CCCCHHHHHHHHHHHH
Confidence 34455555555555321 111 123355555556666666666666554432 1 1334566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
..|++++|...|++..+.. +.+..+|..++.++...|++++|++.+++..+. .|+..........+...++.++|..
T Consensus 110 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHH
Confidence 7777777777777777653 445566666777777777777777777777764 3332211122222344567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---G--CKP-NQNTYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
.|++.... ..|+... ........|+..++ +.++.+.+. . +.| ....|..++..+.+.|++++|+..|++
T Consensus 187 ~l~~~~~~-~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEK-LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhh-CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77665542 1222211 12233345555443 244444321 0 111 235677777777888888888888888
Q ss_pred HhhCCCC
Q 003829 769 LSKLDPH 775 (793)
Q Consensus 769 ~~~~~~~ 775 (793)
+++.+|.
T Consensus 262 Al~~~~~ 268 (296)
T PRK11189 262 ALANNVY 268 (296)
T ss_pred HHHhCCc
Confidence 8877764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-11 Score=80.69 Aligned_cols=49 Identities=47% Similarity=0.858 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 347 PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 347 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-06 Score=87.89 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNF 435 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 435 (793)
+.+......+.+|+.+++.+..... -...|..+...|...|+++.|.++|.+.- .++..|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4455556677777777776665532 22345666677777777777777765532 245566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003829 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRM 515 (793)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 515 (793)
++|.++-++... .......|-.-..-+-+.|++.+|.++|-... .|+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 777776665432 23334445444555556666666666553221 112 2345556666666655555443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
... .-..+...+..-|-..|+...|..-|-+.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 221 11234444555556666666666655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-07 Score=87.49 Aligned_cols=302 Identities=13% Similarity=0.082 Sum_probs=196.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST-YNAVLAALARGGM 539 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 539 (793)
...+...|++.+|+..|...++.+.. +..++..-...|...|+..-|+.-+...++. +||-.. ...-...+.+.|+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 34444445555555555554443211 2223333334455555555555555555543 233211 1111234555666
Q ss_pred hHHHHHHHHHHhcCCCCCC--H------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH
Q 003829 540 WEQSEKIFAEMKGGRCKPN--E------------LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPT 605 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~--~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (793)
+++|..-|+.+++...... . ......+..+...|+...++.....+++ -.+.+...
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE----------i~~Wda~l 191 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE----------IQPWDASL 191 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh----------cCcchhHH
Confidence 6666666666554421100 0 1122234455678899999888776654 23567888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHH--
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII----SYNTV-- 679 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l-- 679 (793)
+..-..+|...|.+..|+.-++...+.. ..+....-.+...+...|+.+.++...++.++. .||.. .|..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888999999999999998888877664 445666666777888899999999999999884 56632 22211
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 680 -------IFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 680 -------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
+....+.++|.++++-.+..++....... ..+..+-.++...|++.+|++...+.++ +.|| ..++..
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 23446778899999999998884333112 3345556677788999999999999987 5665 888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
-+.+|.-...+|.|+.=|+++.+.++++....
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 88999999999999999999999999887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-06 Score=86.89 Aligned_cols=481 Identities=12% Similarity=0.107 Sum_probs=256.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHH
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 263 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a 263 (793)
...|.+++|..++++..+. ..|-..|-..|.+++|+++-+.=.+- . =..||.....-+...+ +.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~-Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARR-DIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhc-cHHHH
Confidence 3567888888888876554 23445566778888887766443221 1 1234544444444445 67777
Q ss_pred HHHHHHHHh----------CCC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 264 MALVEGMKS----------AGV---------KPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVY 324 (793)
Q Consensus 264 ~~~~~~~~~----------~~~---------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 324 (793)
++.|++... ..+ .-|...|.--...+-..|+.+.|+.+|...+. |.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 777664311 110 01222222222223345666666666655442 45677778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------
Q 003829 325 GKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA------- 397 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~------- 397 (793)
|-+|+.++|-++-++- -|..+...+.+.|-..|++.+|...|.+... +...|+.|-..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 8899999999888764 2566777789999999999999999987653 22333322221
Q ss_pred ------C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHH
Q 003829 398 ------G--KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE--------INKC--NCKPDIVTWNT 459 (793)
Q Consensus 398 ------g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~ 459 (793)
| +.-.|-++|++. |. -....+..|-+.|.+.+|+++--+ ++.. ....|+...+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 1 222233333332 11 122344567778888777765322 1222 22345667777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHH----HHHHHHHH
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE-AGVTPDLST----YNAVLAAL 534 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~----~~~l~~~~ 534 (793)
-...++...++++|..++....+. .-.+. +|+...+.-..++-+.|.- ++-.|+... ...+.+.|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 778888888889888887665542 11222 3333333333344344422 222334433 44455678
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh----HHHHHHHHHCCCCCCHHHHHHHH
Q 003829 535 ARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS----ERAFLELKKKGFSPDIPTLNAMI 610 (793)
Q Consensus 535 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~ 610 (793)
.++|.+..|-+-|.+.-+. ...+.++.++|+.++..-+.+-... ..+-+.++......+..+.-.++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~ 1226 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIE 1226 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhH
Confidence 8888888888777665321 1234455566665543211100000 00011223344455555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----------H
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV----------I 680 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~ 680 (793)
..|.+...++---.+|....+. ...-|..+-.+ .|-+++|...+.++.+++. ....++.| +
T Consensus 1227 tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l 1297 (1416)
T KOG3617|consen 1227 TFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQL 1297 (1416)
T ss_pred hhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHH
Confidence 5554443343333333332221 11111111111 2345556666655554321 11122222 2
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 681 FAY-CRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 681 ~~~-~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
... .-..+..+..+-...|++.-..|| ...|..||..+....++..|-+.+++|..+
T Consensus 1298 ~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1298 RKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 111 111255555666666666433333 367899999999999999999999999875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-08 Score=96.74 Aligned_cols=95 Identities=13% Similarity=-0.029 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (793)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 290 (793)
|..++..|.+.|++++|+..|++..+..+ .+...|+.+...+...| ++++|.+.|++..+..+. +..++..+..++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAG-NFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44444444444555555555544444321 13444444444444444 445555555444443222 2333444444444
Q ss_pred cCCCHHHHHHHHHHHHHC
Q 003829 291 RGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~ 308 (793)
..|++++|.+.|+...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 445555555555444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-07 Score=83.81 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCC 289 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 289 (793)
+...|.-.|...|++..|..-+++.++..+ -+..+|..+...|.+.| ..+.|.+.|++..+..+. +..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 344556667777777777777777776532 24556777777777777 677777777777665443 556666666677
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 290 RRGSLHEEAAGVFEEMKLAGF-SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 290 ~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
|..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++.++. .+....+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777766521 112345666666666777777777777777664 222344566666777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
...++.....+. ++..+....|..--..|+.+.+-+.=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777766654 66666666666666677776666655555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-07 Score=85.45 Aligned_cols=290 Identities=13% Similarity=0.124 Sum_probs=134.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 003829 212 TSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL-ISCCR 290 (793)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~ 290 (793)
++.+..+.+..++++|++++..-.++.+ .+......+..+|.... ++..|...++++-.. .|...-|... ...+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455555555555555444421 13344444444444444 455555555555443 2222222221 22344
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLD--VYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
+.+.+..|..+...|... ++...-..-+. .....+|+..+..+.++.... -+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 445555555555444321 11111111111 122345555555555554321 1233333334444455555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------C---------------HH
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKP-------------N---------------IC 420 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~---------------~~ 420 (793)
.+-|+...+.|.-.....|+..+ +..+.|+++.|.+...+++++|++. | +.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 55555555543333334444333 2234455555555555555544321 1 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 421 TFNALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 421 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+.-.- ..+++-+..+-+.-+.+.++ -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 22333344557777777777777764321 234555554443221 22334444444444555443 3456777777777
Q ss_pred hccCCHHHHHHHHHH
Q 003829 500 SRCGSFDQAMSIYKR 514 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~ 514 (793)
|+..-++.|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 877777777777655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-06 Score=86.20 Aligned_cols=120 Identities=10% Similarity=-0.024 Sum_probs=81.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
.+.+.+.|++..|...|.+++... |.|...|..-..+|.+.|++..|+.-.+..++.+ ++....|.-=+.++....+|
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 556778888999999888888876 6778888888888888898888888888887752 22344555556666677788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVITY-NTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
++|.+.|++.++ ..|+..-+ ..+.+++..........++.+.
T Consensus 443 dkAleay~eale--~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 443 DKALEAYQEALE--LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHh--cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 888888888888 44554333 3333333332223334444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-06 Score=88.58 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGF-DIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
...++..+...+...|+.+.+...+....+... ..+. .........+...|++++|..++++..+..+ .+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-
Confidence 344566666666667777777666666543322 1222 2333344556678899999999998887642 24444442
Q ss_pred HHHHHh----cCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 250 LNVYGK----MGMPWNKIMALVEGMKSAGVKPDS-YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVY 324 (793)
Q Consensus 250 l~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 324 (793)
...+.. .+ ....+.+.++. .....|+. .....+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 83 ~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 222222 23 34444444443 11222332 333445556777888888888888888764 33456677778888
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 325 GKCRRPKEAMQVLREMKINGC-LPSI--VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888888766422 1222 24556777788888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-06 Score=100.29 Aligned_cols=345 Identities=8% Similarity=-0.032 Sum_probs=214.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHh
Q 003829 429 HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF------IPE--RDTFNTLISAYS 500 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~l~~~~~ 500 (793)
....|+++.+...++.+.......+..........+...|+++++..++....+.-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445566666666665542111111222223334445567788888777776654211 011 112223334556
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcCCC---CC--CHhhHHHHHHHHHc
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGGRC---KP--NELTYSSLLHAYAN 571 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~ 571 (793)
..|+++.|...++...+.....+. ...+.+...+...|++++|...+.+...... .+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788999999999887763111121 2345555667789999999999888764211 11 12344556667788
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHH
Q 003829 572 GREIDQMLALSEEIYSERAFLELKKKGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSG--FTP--SLTTYNTL 644 (793)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l 644 (793)
.|+++.|...+++... .....+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 544 ~G~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 544 QGFLQAAYETQEKAFQ-----LIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred CCCHHHHHHHHHHHHH-----HHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 9999999999887654 12222221 1 23345556667788899999999998876531 112 23345556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIK-PDIISY-----NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFV 715 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~ 715 (793)
...+...|++++|...++++....-. .....+ ...+..+...|+.+.|..++............ ..+..++
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 67788899999999999988642101 011111 11224455689999999998776542111111 1245677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.++...|++++|...++++.+. |...+ ..++..++.++.+.|+.++|...+.++++.......
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 8899999999999999998752 32322 456777888899999999999999999998755444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-06 Score=78.34 Aligned_cols=311 Identities=15% Similarity=0.120 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh
Q 003829 177 AVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLIT-YNVILNVYGK 255 (793)
Q Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~ 255 (793)
.-+...+...|++..|+..|..+++.++. +-.++-.-...|...|+-.-|+.-|.+.++. +||-.. --.-...+.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 33444455555555666555555544222 2223333344555555555555555555553 344322 1122334455
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDS--------------YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
.| ..++|..-|+.+++....-+. ......+..+...|+...|+.....+++.. +.|...|..-.
T Consensus 119 ~G-ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 119 QG-ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred cc-cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 55 555555555555554321100 011112223444566666666666666542 34555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
.+|...|++..|+.=++...+. ...+..++..+...+...|+.+.++...++.++. .||...+... |-+ +.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---YKk---lk 267 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---YKK---LK 267 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---HHH---HH
Confidence 6666666666666555554433 2234445555555566666666666666665553 3443221111 111 11
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCChHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVT---WNTLLAVFGQNGMDSEVSGVFK 478 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~ 478 (793)
+..+.++.|. .....+++.++++..+.+.+......... +..+...+...|++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 1111111111 12234555556665555555432212222 2334445555666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 479 EMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 479 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+.++... .|+.++..-..+|.-...++.|+.-|+.+.+.
T Consensus 332 evL~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6665422 13556666666666666666666666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-07 Score=94.35 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=153.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++..+.. +.+...+..|...|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34445555555555555555443 45555555555555555555555555555432 22444555555555555555555
Q ss_pred HHHHHHHHhHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 579 LALSEEIYSERA-FLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEIL-HFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 579 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
+..++.-+.... +......+...+.. .. ..+.....+....++| +...+.+..+|+.+...|.-.|--.|++++
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~--~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFE--NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHhCccchhccccCcccccc--CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 555554322000 00000000000000 00 0001111122333333 333444445788888888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 657 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
|.+.|+.+++.. +-|...||.|+-.++...+.++|+..|+++++ +.|.. .+...|+-.|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999852 33577899999999999999999999999999 77764 667788889999999999999988876
Q ss_pred H---cC------CCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 736 K---QG------CKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 736 ~---~~------~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
. ++ ..++..+|..|-.++.-.++.|-+.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 4 21 11123577777777777777664443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-06 Score=89.43 Aligned_cols=295 Identities=11% Similarity=0.034 Sum_probs=175.6
Q ss_pred hccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--
Q 003829 143 LGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYAS-- 220 (793)
Q Consensus 143 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 220 (793)
+...++++.+...+...... .+...............+...|++++|.++++.+....+. +...+.. ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQA---LAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLG 90 (355)
T ss_pred HHhcCCcchHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhc
Confidence 33456667766666665441 1111123344455566777899999999999998877543 5545443 323333
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003829 221 --NGRYREAVMVFKKMEEEGCKPT-LITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEE 297 (793)
Q Consensus 221 --~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 297 (793)
.|..+.+...+... ....|+ ......+...+...| ++++|...+++..+.... +...+..+..++...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 44555555555441 112333 345556667888889 899999999999987644 56677888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHH-H--HHHHHHHhcCCHHHHHH
Q 003829 298 AAGVFEEMKLAGF-SPDK--VTYNALLDVYGKCRRPKEAMQVLREMKINGC-LPSIVTY-N--SLISAYARDGLLEEAME 370 (793)
Q Consensus 298 A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~ 370 (793)
|..++++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999999887532 1232 3455788899999999999999999854322 1112111 1 22333334444333322
Q ss_pred H--HHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhcCCHHHH
Q 003829 371 L--KTQMVEIGIT--PDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK---P-----NICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 371 ~--~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~A 438 (793)
. +......... ...........++...|+.+.|..+++.+...... - .........-.+...|+.++|
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 2 1111111101 11122224556667788888888888887653211 0 111122222334467777777
Q ss_pred HHHHHHHH
Q 003829 439 MKVFDEIN 446 (793)
Q Consensus 439 ~~~~~~~~ 446 (793)
.+.+....
T Consensus 327 ~~~L~~al 334 (355)
T cd05804 327 LELLGPVR 334 (355)
T ss_pred HHHHHHHH
Confidence 77776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-06 Score=79.26 Aligned_cols=315 Identities=11% Similarity=0.101 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHH
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNS-LISAYA 360 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 360 (793)
+..++..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444544555566666666665555442 124445555556666666666666666665442 333333322 234445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSG--FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (793)
+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666665555432 122111111222 123455555555555544322 333333344444455666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHH
Q 003829 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERD----TFNTLISAYSRCGSFDQAMSIYKR 514 (793)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 514 (793)
.+-|+...+-+--.....|+..+. ..+.|++..|+++..+++++|+...+. ...-.+++-. .|+. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~---- 234 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LV---- 234 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HH----
Confidence 666655544332223344443332 234455555555555555554431111 0000000000 0000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHH
Q 003829 515 MLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGR-CKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLE 593 (793)
Q Consensus 515 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (793)
|...+ -...+|.-...+.+.|+++.|.+.+.+|.-+. ...|++|...+.-.-.. ++..+..+-+. .
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLq---------F 301 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQ---------F 301 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHH---------H
Confidence 00000 01223333445567788888888887775332 23466666554432222 22222111111 1
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 594 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 628 (793)
Q Consensus 594 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 628 (793)
+.... +--..||..++-.||+..-++-|-.++.+
T Consensus 302 LL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 11111 22345777777778887777777777654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00019 Score=76.68 Aligned_cols=525 Identities=13% Similarity=0.106 Sum_probs=248.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITT--YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 262 (793)
..++|..|.+....+.+..+. . .|..++.+ +.|.|+.++|..+++.....+.. |..|...+-.+|...| ..++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~-~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-A--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG-KLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-c--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh-hhhH
Confidence 345666666666665554221 1 22223332 34666666666666665544322 6666666666666666 6667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCR-R---------PKE 332 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~---------~~~ 332 (793)
|..+|+...+. .|+..-...+..+|.|.+++.+-.+.--+|-+. ++-+...+-+++..+.+.- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 77777666554 344555555666666666665544444444332 2333444334444333321 1 223
Q ss_pred HHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 333 AMQVLREMKING-CLPSIVTYNSLISAYARDGLLEEAMELK-TQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 333 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
|.+.++.+.+.+ ..-+..-.......+-..|++++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 455555555443 1112222223333445567777777777 33333323334444445556666777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHH----------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 003829 411 RSAGCKPNICTFNALIKM----------------HGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (793)
Q Consensus 411 ~~~~~~~~~~~~~~l~~~----------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 474 (793)
..+|.. | |...++. +...+..+...+...+....+.+-.-..+--+..-+..-|+.+++.
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHH
Confidence 766532 2 2221111 1122333444444443333211111111112222223456666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHH---HHHHHHHHHhcCC-----hHHHH
Q 003829 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTP--DLST---YNAVLAALARGGM-----WEQSE 544 (793)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~g~-----~~~A~ 544 (793)
-.|-+-. |..| .+..=+..|...=..++-..++.......... |... +...+....-.|. -+...
T Consensus 329 ~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 4443222 2111 12222222222222233333333332221000 0000 1111111111221 12233
Q ss_pred HHHHHHh---cCC------CCCCHh---------hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 545 KIFAEMK---GGR------CKPNEL---------TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 545 ~~~~~~~---~~~------~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
.++.+.. +.| .-|+.. +.+.|++.|.+.++... +|+.+. ..+.....-+.|..+-
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~---l~eaI~----LLE~glt~s~hnf~~K 476 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD---LFEAIT----LLENGLTKSPHNFQTK 476 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHH----HHHHHhhcCCccHHHH
Confidence 3332221 111 122222 34567788888887762 222221 1111222234456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..++..|+-.|-+..|.+.|..+.-..+..|..-|- +...+...|++.-+...+....+. +..+..--.-+|....+.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~ 554 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRR 554 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHc
Confidence 778899999999999999999887666655554442 334456677888888877777653 222221112223333455
Q ss_pred CCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 687 GRMKEASRIF---SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 687 g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
|.+.+..++. +++..+...--..+=+..+..++..++.++-...++.|.
T Consensus 555 g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 6665554432 233221111112334666777777788877777777765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-05 Score=95.11 Aligned_cols=377 Identities=10% Similarity=0.013 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 254 (793)
.+......+...|++.+|.......... ..-..........+...|+++.+..+++.+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 3444455566677777666544433211 00011222233445567788877777766532111112222233444445
Q ss_pred hcCCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGV------KPD--SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD----KVTYNALLD 322 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~------~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~li~ 322 (793)
..| +++++...++.....-- .+. ......+...+...|++++|...+++....-...+ ....+.+..
T Consensus 421 ~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 566 78888888877654211 111 11222233445678889999888888766311112 124456666
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 003829 323 VYGKCRRPKEAMQVLREMKIN----GCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVEI----GIT--P-DVFTYTTL 390 (793)
Q Consensus 323 ~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l 390 (793)
.+...|++++|...+++.... |.. ....++..+...+...|++++|.+.+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 777889999998888877542 111 11235566677788889999998888776542 221 1 23345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-----HHH
Q 003829 391 LSGFEKAGKDESAMKVFEEMRSA----GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNC-KPDIVTW-----NTL 460 (793)
Q Consensus 391 i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l 460 (793)
...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.++....... ......+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66677789999998888876542 1111234455566778888999999888887743210 0111111 112
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPE---RDTFNTLISAYSRCGSFDQAMSIYKRMLEA----GVTP-DLSTYNAVLA 532 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 532 (793)
+..+...|+.+.|..++........... ......+...+...|++++|...+++.... |... ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3445567888888888766554221111 112345677788889999999998887653 3222 2345666667
Q ss_pred HHHhcCChHHHHHHHHHHhcCC
Q 003829 533 ALARGGMWEQSEKIFAEMKGGR 554 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~ 554 (793)
++.+.|+.++|...+.+..+..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8889999999999999987653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00013 Score=73.27 Aligned_cols=134 Identities=10% Similarity=0.121 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
-+..+|..+++-+... ..+++++.+++++.. ++-+...|..-|....+..+++....+|.+.+.. ..++..|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 4777788888877666 788888888888765 4446777888888888888888888888777655 33566777766
Q ss_pred HHHHhcCCCH----HHHHHHHHH-HHhCCCCCCHH-HHHHHHHH---------HHcCCCHHHHHHHHHHHHHC
Q 003829 251 NVYGKMGMPW----NKIMALVEG-MKSAGVKPDSY-TFNTLISC---------CRRGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 251 ~~~~~~g~~~----~~a~~~~~~-~~~~~~~p~~~-~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~ 308 (793)
.-..+..... +...+.|+- +.+.|+.+-.. .|+..+.. +....+++..+++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 6554433122 222233332 23345443322 23333322 33344666777788887765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=92.91 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF-VEALDVVR 732 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 732 (793)
+++|.-+|+++.+. +.++..+.+.++.++...|++++|.++++++.+.+.. +..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44455555554432 3334444444444444555555555554444432211 233444444444444443 33334444
Q ss_pred HHH
Q 003829 733 YMI 735 (793)
Q Consensus 733 ~~~ 735 (793)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=92.46 Aligned_cols=257 Identities=13% Similarity=0.101 Sum_probs=157.1
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 498 AYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 498 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
-+.-.|.+..++.-.+ ........+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222111112333444556677777665433 3333322 4555555444443333333344
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFS-PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
++.-+++. ...... .+..........+...|++++|+++++.. .+.......+.+|.+.++++.
T Consensus 85 ~l~~l~~~---------~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 85 ALEELKEL---------LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp HHHHHHHC---------CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHH---------HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 43332211 111112 12223333334567788999998887653 467778888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 657 AEDVLREILAKGIKPDIISYNTVIFAY----CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 732 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 732 (793)
|.+.++.|.+. ..|. +...++.++ ...+.+++|..+|+++.+. ..++..+.+.++.++...|++++|.++++
T Consensus 150 A~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999875 3343 333333333 2234799999999998764 45678899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHhhCCCCCCHH
Q 003829 733 YMIKQGCKPNQNTYNSIVDGYCKLNQR-YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 733 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 779 (793)
++++.+ +.+..+...++-+....|+. +.+.+++.++...+|+.+-.
T Consensus 226 ~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 226 EALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 988643 33577877888888888887 67888999999998875443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00029 Score=75.38 Aligned_cols=526 Identities=13% Similarity=0.129 Sum_probs=291.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 003829 219 ASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY--GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE 296 (793)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 296 (793)
...+++.+|..-..++.++ .|+.. |..++.++ .+.| ..++|..+++.....+.. |..|...+-..|.+.+..+
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 4677899999999998876 44543 44444444 5778 789999999988877666 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-C---------HH
Q 003829 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG-L---------LE 366 (793)
Q Consensus 297 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~ 366 (793)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+. .+.+...|=.+++.+.+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999887 567777777888899988886655444444332 3334444444455444321 1 23
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITP-DVFTYTTLLSGFEKAGKDESAMKVFE-EMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
-|.+.++.+.+.+.+. +..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666654221 22222223344556889999999994 454544455666667778888899999999999888
Q ss_pred HHhCCCCCCHHHHHHHHHHH----------------HhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHH
Q 003829 445 INKCNCKPDIVTWNTLLAVF----------------GQNGMDSEVSGVFKEMKRAGFIPERD-TFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 507 (793)
+...+. |. |...+..+ ...+..+...+...+....... ++. ...-+...+...|+.++
T Consensus 252 Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel~kr~~~~gd~ee 326 (932)
T KOG2053|consen 252 LLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLELDKRYKLIGDSEE 326 (932)
T ss_pred HHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHHHHHhcccCChHH
Confidence 887752 22 33222211 1112222222222222222111 111 11122222334577776
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHh----h---HHHHHHHHHcCC-----CH
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL----T---YSSLLHAYANGR-----EI 575 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~~-----~~ 575 (793)
+.-.|-+-. |.. ..|..=+..|...=..++-..++...... .++.. . ....+..-.-.| ..
T Consensus 327 ~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 327 MLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPA 399 (932)
T ss_pred HHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCCh
Confidence 654443322 211 12222222232222333334444443322 11111 0 111111111112 12
Q ss_pred HHHHHHHHHHHhHHHHHH--HHHCCCCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHH
Q 003829 576 DQMLALSEEIYSERAFLE--LKKKGFSPDIP---------TLNAMISIYGRRQMVA---KTNEILHFMNDSGFTPSLTTY 641 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 641 (793)
+....++.+.... +.. -..+++-|+.. +-+.|++.+.+.++.. +|+-+++...... +.|..+-
T Consensus 400 d~i~a~~~kl~~~--ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~K 476 (932)
T KOG2053|consen 400 DSILAYVRKLKLT--YEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTK 476 (932)
T ss_pred HHHHHHHHHHHHH--HhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHH
Confidence 2222332222110 000 01122222222 3356677888877755 4555555555543 5566667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
..++..|+-.|-+..|.++|+.+--+.+.-|...|.. ..-+...|++..+...++...+. ...+..----+|..-.+.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~ 554 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRR 554 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHc
Confidence 7889999999999999999998876666656544432 34455668888888888877762 111111122333334556
Q ss_pred CChHHHHHHH---HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 722 SLFVEALDVV---RYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 722 g~~~~A~~~~---~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|.+.+..++. +++... ... -..+-+.+++.++..++.++-...++.+.
T Consensus 555 g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 7766654443 233211 111 13445667777888888887777776665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-07 Score=90.78 Aligned_cols=260 Identities=12% Similarity=0.097 Sum_probs=169.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 003829 428 MHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 428 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 507 (793)
-+.+.|++.+|.-.|+..++.+ +-+...|..|......+++-..|+..+++..+.... |......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3557777878777777776654 335667777777777777777777777777766433 55566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS 587 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (793)
|.+.++.-+...++ |..+. ..+.-+..... +-.++...+..+. ++|-
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~----~a~~~~~~~~~-------~s~~~~~~l~~i~-------------~~fL---- 418 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLV----SAGENEDFENT-------KSFLDSSHLAHIQ-------------ELFL---- 418 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcc----ccCccccccCC-------cCCCCHHHHHHHH-------------HHHH----
Confidence 66666665543221 10000 00000000000 0012222222222 1111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 588 ERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
......+...|..+...|.-.|.-.|.+++|.+.|+.++... |.|...||-|...++...+.++|+..|+++++.
T Consensus 419 ----eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 419 ----EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred ----HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 122344545778888888888999999999999999999875 778889999999999999999999999999984
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003829 668 GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS---------GLVPDVITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 668 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+|+ +.+...|+-+|...|.+++|.+.|-.++.. +..++..+|.+|=.++.-.++.+-+.+
T Consensus 494 --qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 --QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred --CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 777 567788888999999999999999888752 111123456666566666666554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-07 Score=86.79 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H--
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL---TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-I-- 673 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-- 673 (793)
......+..++..+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677888888999999999999999998764 3333 466778899999999999999999999863 32 2
Q ss_pred -HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHhcCChHH
Q 003829 674 -ISYNTVIFAYCRN--------GRMKEASRIFSEMRDSGLVPDVI-TY-----------------NTFVASYAADSLFVE 726 (793)
Q Consensus 674 -~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~~~~ 726 (793)
.++..+..++... |++++|.+.|+++.+. .|+.. .+ ..++..|.+.|++++
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 2566667777665 7899999999999983 44331 11 245667889999999
Q ss_pred HHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 727 ALDVVRYMIKQGC-KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 727 A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
|+..++++++..- .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999987421 22 2578889999999999999999999998887663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00025 Score=71.35 Aligned_cols=151 Identities=9% Similarity=0.081 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM 618 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 618 (793)
.+....+++++......--..+|..+++...+..-++.|..+|.++ .+.+..+ ++.++++++..+|. ++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka---------R~~~r~~hhVfVa~A~mEy~cs-kD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA---------REDKRTRHHVFVAAALMEYYCS-KD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH---------hhccCCcchhhHHHHHHHHHhc-CC
Confidence 3444444444443221112234444555555554555555544332 2333333 45556666665543 55
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIF 696 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 696 (793)
.+-|.++|+.-.+. +..++.-....++.+...++-..|..+|+++...++.++ ...|..++.--..-|+...+.++-
T Consensus 417 ~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 417 KETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred hhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56666666655544 233334444555555666666666666666665544444 345666666555666666666665
Q ss_pred HHHHH
Q 003829 697 SEMRD 701 (793)
Q Consensus 697 ~~~~~ 701 (793)
+++..
T Consensus 496 kR~~~ 500 (656)
T KOG1914|consen 496 KRRFT 500 (656)
T ss_pred HHHHH
Confidence 55544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-06 Score=79.76 Aligned_cols=154 Identities=6% Similarity=0.032 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
+-.|...|+++.+....+.+... . ..+...++.+++...+++.++.+ +.|...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~---------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---L---------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---c---------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34678889988875554332211 0 01223667888998999888864 55788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVP-DVITYNTFVASY-AADSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++|...|+++.+ +.| +...+..++.++ ...|+ .++|.++++++++.+ +.+...+..++..+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999 445 567888888874 67777 599999999999853 33588899999999999999999999
Q ss_pred HHHHhhCCCCCCHH
Q 003829 766 VNNLSKLDPHVTKE 779 (793)
Q Consensus 766 ~~~~~~~~~~~~~~ 779 (793)
++++++..|..+..
T Consensus 167 ~~~aL~l~~~~~~r 180 (198)
T PRK10370 167 WQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHhhCCCCccH
Confidence 99999998876543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-07 Score=80.54 Aligned_cols=162 Identities=15% Similarity=0.038 Sum_probs=136.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+...+...|+-+....+........ +.|......++....+.|++.+|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 666667778888888888887765542 5677777789999999999999999999999863 66789999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
|++++|..-|.+..+ +.| +...++.++..|.-.|+.++|..++......+ .-|..+-..+..+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999 444 45788999999999999999999999998653 33677788889899999999999988
Q ss_pred HHHHhhCC
Q 003829 766 VNNLSKLD 773 (793)
Q Consensus 766 ~~~~~~~~ 773 (793)
...-+...
T Consensus 225 ~~~e~~~~ 232 (257)
T COG5010 225 AVQELLSE 232 (257)
T ss_pred ccccccch
Confidence 76655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-07 Score=78.52 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..++++.++. .|+ .+..+..++...|++++|...|++++. ..| +...|..++.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 344 355677788888999999999999888 444 557888888889999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 737 QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 737 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+ +.+...+..++.++.+.|++++|+..++++++..|++....
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 42 33578888888889999999999999999999988865544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-05 Score=80.15 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=134.7
Q ss_pred hcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCC-CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGR-EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
..++.++|+.+..+++.. .| +..+|..-..++...| ++++++..+++++. . .+.+..+|+.....+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---------~-npknyqaW~~R~~~l 116 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---------D-NPKNYQIWHHRRWLA 116 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---------H-CCcchHHhHHHHHHH
Confidence 345556666666666543 23 3334443333444444 45666665554432 1 122334455444444
Q ss_pred HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC
Q 003829 614 GRRQM--VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN---GR 688 (793)
Q Consensus 614 ~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 688 (793)
.+.|. .++++.+++++.+.+ +-|..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 44444 256677777777765 567788888888888888888888888888876533 566777666665544 22
Q ss_pred ----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 003829 689 ----MKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD----SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN-- 757 (793)
Q Consensus 689 ----~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-- 757 (793)
.+++..+..++++ ..| |...|+.+...+... ++..+|.+++.+..+.+ ..+......|++.|+...
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhcc
Confidence 2467777777777 344 446777777777763 34566888888876632 224667778888887532
Q ss_pred ----------------CHHHHHHHHHHHhhCCC
Q 003829 758 ----------------QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 758 ----------------~~~~A~~~~~~~~~~~~ 774 (793)
..++|.++++.+.+.+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 34678888888844443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-05 Score=78.61 Aligned_cols=206 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-HHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG-RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP-WNK 262 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~~ 262 (793)
..++.++|+.+...+++..+. +..+|+....++...| ++++++..++++.+.+++ +..+|+-....+.+.|.. .++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 456677888888887776544 5567777777777777 578888888888877533 555677665556666621 256
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----HHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRP----KEAMQ 335 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~ 335 (793)
++.+++++.+.+.+ |..+|.....++.+.|+++++++.++++++.+.. +..+|+....++.+. |.. +++++
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 77788788776655 6777777777777778888888888888877533 556666555544443 222 35566
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARD----GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
...+++.. .+-|...|+-+...+... +...+|.+.+.+....+ ..+......|+..|+.
T Consensus 205 y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 66566554 334666777776666652 33455666666655532 2344555666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-06 Score=86.98 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
..-..+...+.+.|-...|..+|+++. .|...+.+|+..|+..+|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344567777888888999998887654 5667788888889989999888888773 78888888888887
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
....-+++|.++.+.... ..-..+.....+.+++.++.+.|+.-.+.+ +--..+|-.+..+..
T Consensus 468 ~d~s~yEkawElsn~~sa----------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA----------------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred cChHHHHHHHHHhhhhhH----------------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 777777888877664321 111122222334688888888888877765 556777878888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
+.++++.|.+.|...... .|| ...||.+..+|.+.|+-.+|...++++.+.+.. +..+|.+......+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHH
Confidence 888899888888888874 454 668899999999999999999999998887643 4566767777778889999998
Q ss_pred HHHHHHHH
Q 003829 729 DVVRYMIK 736 (793)
Q Consensus 729 ~~~~~~~~ 736 (793)
+.+.++.+
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 88888864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-05 Score=88.32 Aligned_cols=202 Identities=17% Similarity=0.125 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKSA-GVKPD---SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
...|-..|......+ +.++|.+++++.+.. ++.-. -..|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1458 Si~WI~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 334444444444444 455555555544432 11111 1134444443334455556666666666541 1234556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD---VFTYTTLLSGFE 395 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~ 395 (793)
.|...|.+.+.+++|.++|+.|.++ .......|..++..+.+..+-+.|..++.+..+. -|. .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6666666666666666666666555 2234556666666666666666666666665553 222 122223333344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 396 KAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
+.|+.+.++.+|+..+... +--...|+..+++-.+.|+.+.+..+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5566666666666665542 224455666666666666666666666666555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-05 Score=89.31 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 003829 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP---DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS 563 (793)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 563 (793)
....|...|......++.+.|+++.++++.. ++.- -...|.++++.....|.-+...++|+++.+- ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445666666667777777777777776653 1111 1235666666656666666677777776642 22334566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTY 641 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 641 (793)
.|...|.+.+..++|.++++.|+. +.+ ....+|...++.+.++++-++|..++.+..+.- +- .....
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~K--------KF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~I 1603 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLK--------KFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHH--------Hhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHH
Confidence 666777777777777777666543 222 345567777777777777777777777766541 11 23334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYA 719 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 719 (793)
.-.+..-.+.|+.+++..+|+..... .+--...|+.+++.-.++|+.+.++.+|++++..++.|-. ..|..++.---
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 45555556677777777777777765 2334567777777777777777777777777776665532 44455544333
Q ss_pred hcCCh
Q 003829 720 ADSLF 724 (793)
Q Consensus 720 ~~g~~ 724 (793)
..|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 44543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-06 Score=90.12 Aligned_cols=151 Identities=8% Similarity=-0.053 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITY 711 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 711 (793)
.+.+...+..|.....+.|.+++|+.+++.+.+. .|+ ......++.++.+.+++++|+..+++.++ ..|+ ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence 4667889999999999999999999999999985 555 66788889999999999999999999999 4554 5778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 790 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~k 790 (793)
..++.++.+.|++++|+.+|++++..+ +-+..++..++.++.+.|+.++|...|+++++..-. ....|++.+..+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRLVDLNA 234 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHHHHHHH
Confidence 899999999999999999999999732 334888999999999999999999999999988533 34666666665544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=73.27 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=163.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
++-+.-.|.+..++..-....... -+...-..+.++|...|++..... ++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 445556788888777665554432 234444445566777776544333 333322 33444444444444434443
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
+..+.-..+ .+.......+......-+..|.+.|++++|++..+... +......=+..+.+..+++
T Consensus 89 ~~~~~~l~E--------~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 89 KSILASLYE--------LVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFD 154 (299)
T ss_pred HHHHHHHHH--------HHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHH
Confidence 333322221 22333344444444445557889999999998887622 3344444445566777889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
-|.+.+++|.+- . +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+..+.++...|++++|..++
T Consensus 155 ~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 155 LAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 999999999874 2 55566666666643 35789999999999874 5677888889998999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCHH
Q 003829 732 RYMIKQGCKPNQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 732 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 779 (793)
+.++.+. ..++.+...++-+-...|+-.+ -.+.+.......|+.+-+
T Consensus 231 ~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 231 EEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9998763 3467777666666566666544 456777777777775443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-06 Score=88.33 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=180.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 520 VTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
..|--..-..+...+.+.|-...|..+|+++- .|.-++.+|...|+..+|..+..+- ..-
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~-----------lek 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQE-----------LEK 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHH-----------hcC
Confidence 34444555667788999999999999998864 3566788999999888888775432 224
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV 679 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 679 (793)
+|+...|..+++......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +--..+|..+
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 788999999999888888889999988765432 21222233344789999999999888763 3357799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
..+..+.++++.|.+.|..... ..||. ..||++..+|.+.|+-.+|...++++++.+ ..+..+|....-...+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 9999999999999999999998 77765 889999999999999999999999999876 4457778777888889999
Q ss_pred HHHHHHHHHHHhhCC
Q 003829 759 RYEAITFVNNLSKLD 773 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~ 773 (793)
+++|++.++++.++.
T Consensus 603 ~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998774
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-05 Score=70.25 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 572 GREIDQMLALSEEIYSERAFLELKKKGFSPDIP-TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650 (793)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 650 (793)
..+.++.+++++++.. .+......++.. .|-.+.-+....|+.+-|...++.+...- +.+..+-..-.-.+..
T Consensus 25 ~rnseevv~l~~~~~~-----~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLN-----YSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEA 98 (289)
T ss_pred ccCHHHHHHHHHHHHH-----HhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHH
Confidence 3455666666665543 222222445543 34455556667899999999999988763 5455544444444667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDV 730 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 730 (793)
.|++++|+++++.+++.+ +-|.+++.--+-..-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 899999999999999875 446677777677777788888999888888874 444889999999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLN---QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+++++- +.| +.-.+..+++.++-.| +.+-|+++|.++++++|.+....|.-.+
T Consensus 177 lEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 177 LEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999986 455 4666778888877665 5677999999999999977666555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=58.18 Aligned_cols=32 Identities=50% Similarity=0.786 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 309 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
|+.||..+|+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-05 Score=70.92 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 563 SSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN 642 (793)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 642 (793)
..+-..+...|+-+....+...+ ....+.+.......+....+.|++.+|...+++..... ++|...|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~----------~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKS----------AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhh----------hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 44555666667666665554321 12234456667778888999999999999999998875 88999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 722 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 722 (793)
.+.-+|.+.|+++.|..-|.+..+.. .-+...++.+...|.-.|+.+.|..++......+.. |..+-..|.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcC
Confidence 99999999999999999999999862 335778899999999999999999999999986443 7788889999999999
Q ss_pred ChHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMI 735 (793)
Q Consensus 723 ~~~~A~~~~~~~~ 735 (793)
++++|.++...-.
T Consensus 217 ~~~~A~~i~~~e~ 229 (257)
T COG5010 217 DFREAEDIAVQEL 229 (257)
T ss_pred ChHHHHhhccccc
Confidence 9999998887754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-05 Score=76.47 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 238 (793)
.....+...+..+...|+++.|...|+.+....+.. ...++..+..++...|++++|+..|+++.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 355566666666777777777777777766543321 12355666677777777777777777776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=57.56 Aligned_cols=32 Identities=50% Similarity=0.958 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 344 GCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 344 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-06 Score=72.09 Aligned_cols=115 Identities=12% Similarity=0.164 Sum_probs=86.1
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 660 VLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 660 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.+++++.. .| +......++..+...|++++|.+.|+++.+.+.. +...+..++.++...|++++|...+++.++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555553 33 3455666777788888888888888888874322 55777888888888888888888888887743
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 739 CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 739 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+...+..++.++...|++++|..+++++++.+|++..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 335777778888888888888888888888888887655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-06 Score=71.10 Aligned_cols=121 Identities=10% Similarity=-0.071 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 624 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
.++++..+. .|+ .+..+...+...|++++|...|+.+.... +.+...|..++.++...|++++|...|+++.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 456666554 233 35567778889999999999999998863 44678889999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGY 753 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 753 (793)
..| +...+..++.++...|++++|+..++.+++. .|+ ...+.....++
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 444 5688899999999999999999999999874 554 55555555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-05 Score=84.55 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF--- 681 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--- 681 (793)
.+..++.+|-+.|+.++|..+++++.+.+ +.|+.+.|.++..|... ++++|++++.++...-+ +..-|+.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~ 193 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHH
Confidence 44555555555566666666666665554 44555556565555555 56666665555554200 0000000000
Q ss_pred HH--HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 682 AY--CRNGRMKEASRIFSEMRDS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 682 ~~--~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
-+ +...+++.-.++.+.+..+ |..--..++..+...|....++++++.+++.+++.. +.|......++.+|. ++
T Consensus 194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~k 270 (906)
T PRK14720 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EK 270 (906)
T ss_pred HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HH
Confidence 00 1112233334444444432 222223455666677778888999999999999852 335667777887775 44
Q ss_pred HHHHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 003829 759 RYEAITFVNNLSKL-DPHVTKELECKLSDR 787 (793)
Q Consensus 759 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 787 (793)
+.. ...+++.++. +..+....+...++.
T Consensus 271 Y~~-~~~~ee~l~~s~l~~~~~~~~~~i~~ 299 (906)
T PRK14720 271 YKD-HSLLEDYLKMSDIGNNRKPVKDCIAD 299 (906)
T ss_pred ccC-cchHHHHHHHhccccCCccHHHHHHH
Confidence 444 5555555544 444443333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-06 Score=75.29 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=105.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY-CRNGR--MKEA 692 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 692 (793)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 567788888888888775 7899999999999999999999999999999974 34678888888874 67777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.++++++++.+.. +..++..++..+.+.|++++|+..++++++. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 9999999994433 5688999999999999999999999999986 355543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00018 Score=65.72 Aligned_cols=250 Identities=13% Similarity=0.085 Sum_probs=170.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW 540 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 540 (793)
++-+.-.|.+..++..-....... -+...-..+.++|...|.+.....- ... |-.+.......+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 455666778877776655444332 3555566677788888876544332 222 2244555555555555555555
Q ss_pred HHHHHH-HHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 541 EQSEKI-FAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 541 ~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
++-..- .+.+.......+......-...|...+++++|.+..+. ..+......-...+.+..++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~---------------~~~lE~~Al~VqI~lk~~r~ 153 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL---------------GENLEAAALNVQILLKMHRF 153 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHH
Confidence 554444 44444443333333334444568899999999987653 12334444445567788899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+-|...+++|.+- .+..+.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 9999999999874 366777777777754 35689999999999986 688999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 696 FSEMRDSGLVPDVITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
+++++..... ++.+...++.+-...|...++ .+.+.++..
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 9999986544 678888888888888887665 455556554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=79.60 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=76.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
.-..+.++|++|+..|.++++ +.| |.+.|..-..+|++.|.++.|++-.+..+. +.|. ..+|..|+.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 345677888888888888888 555 557778888888888888888888888887 4565 7788888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 003829 759 RYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 759 ~~~A~~~~~~~~~~~~~~~ 777 (793)
+++|++.|+++++++|++.
T Consensus 165 ~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHhhhccCCCcH
Confidence 8888888888888888876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-05 Score=84.93 Aligned_cols=148 Identities=9% Similarity=0.006 Sum_probs=125.9
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003829 169 LVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNV 248 (793)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 248 (793)
.+.+..++..+..+....|++++|+.+++.+.+..+. +...+..++.++.+.+++++|+..+++.....+. +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4457889999999999999999999999999988555 7888999999999999999999999999987533 6778888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 249 ILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 249 ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
+..++.+.| ++++|.++|+++...+.. +..++..+..++-+.|+.++|...|+...+.- .+....|+.++
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 888999999 999999999999985432 57889999999999999999999999998762 34556665544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00015 Score=80.33 Aligned_cols=237 Identities=11% Similarity=0.122 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 242 TLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF-NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNAL 320 (793)
Q Consensus 242 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~l 320 (793)
+...+..|+..+...+ ++++|.++.+...+. .|+...+ ..+...+.+.++++.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSEN-LTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4557888888887777 788888888866664 3443332 2222245555555444444 22
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003829 321 LDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (793)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 400 (793)
+.......++.-+..++..|.+. .-+..++..++.+|-+.|+.++|.++++++++.. +-|....|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22233333343333333344432 2244467777888888888888888888888876 45677788888888877 88
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 003829 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (793)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 480 (793)
++|++++.+.+.. |...+++..+.++|.++.... |+ +.+.-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 8888887777654 455556677777777766542 11 111122222222
Q ss_pred HHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 481 KRA-GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 481 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
... +..--..++..+-..|...++++++.++++.+.+.... |......++..|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 221 22223344555555566666666777777666665444 4444555555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-05 Score=68.48 Aligned_cols=116 Identities=12% Similarity=0.004 Sum_probs=88.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 625 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.++++.... +.+......++..+...|++++|...++.+...+ +.+...|..+..++...|++++|..+++++.+.+.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555543 3345556677788888999999999999988763 44677888888999999999999999999888432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003829 705 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNT 745 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 745 (793)
. +...+..++.+|...|++++|+..+++.++. .|+...
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 2 4577788888999999999999999998874 455443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-05 Score=68.60 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFV 715 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~ 715 (793)
|..++..+ ..++..++...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....++. .....|+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 3778888888888888762 223 234445667888889999999999999986533322 3556678
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.++...|++++|+..++..... ......+...+++|.+.|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888999999999998774322 2235567788899999999999999998764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00076 Score=67.53 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=132.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKS---AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG--FSPDKVTYNALLDVY 324 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~ 324 (793)
+..+.+.|.+.....++|+++.. .+-.|..+.... =.-..++.+++..-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 44556667677777777777763 332332211000 001123333443344443221 223444455555443
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 325 GKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM 404 (793)
Q Consensus 325 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 404 (793)
.....-..+-.++.+..+ +.....+.-....+...|++++|+..++.++.. .+-|..........+.+.|+.++|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 285 YEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred hccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 333322233333322222 112223333344555677888888888877765 2334444555566777778888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 003829 405 KVFEEMRSAGCKPN-ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (793)
Q Consensus 405 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 483 (793)
+.++.+... .|+ ....-.+..+|.+.|+..+|+.+++...... +-|+..|..|..+|...|+..++..-..++
T Consensus 361 e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--- 434 (484)
T COG4783 361 ERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG--- 434 (484)
T ss_pred HHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH---
Confidence 888877766 333 5556667777777777777777777766553 556777777777777777766665544433
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 484 GFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
+...|+++.|...+....+.
T Consensus 435 ---------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ---------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ---------------HHhCCCHHHHHHHHHHHHHh
Confidence 33456677777766666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0045 Score=61.38 Aligned_cols=447 Identities=13% Similarity=0.136 Sum_probs=220.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH--HHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPD------KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS--AYA 360 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~ 360 (793)
+.+.+++.+|.++|.++.+.- ..+ ...-+.++++|.. ++.+.....+.+..+. .| ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 447889999999999887652 212 2234566777764 4566666666666553 22 223333333 344
Q ss_pred hcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 003829 361 RDGLLEEAMELKTQMVEI--GITP------------DVFTYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPNICTF 422 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~ 422 (793)
+.|++.+|++.+..-.+. +..+ |-..-+..+.++...|++.+++.+++.+... .+.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988877665 3222 1112244567778899999999988887654 344788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003829 423 NALIKMHGNRGNFVEMMKVFDEINKCN-CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (793)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (793)
+.++-++.+. .|-++.+.. ...-+. |-.++-.|.+.=.. ++.-.=..+.|....+..++....-
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 8877666542 222221110 000111 22222222211000 0000000122222222233322221
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHcCCC
Q 003829 502 CG--SFDQAMSIYKRMLEAGVTPDLST-YNAVLAALARGGMWEQSEKIFAEMKGGRCKP----NELTYSSLLHAYANGRE 574 (793)
Q Consensus 502 ~g--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~ 574 (793)
.- +..--.++++.-...-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111122222222223333222 2222233332 3344444444433221111 12345555556666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCCCHHH-------HHHHHHHHH-hc---CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 575 IDQMLALSEEIYSERAFLELKKKGFSPDIPT-------LNAMISIYG-RR---QMVAKTNEILHFMNDSGFTPSLTTYNT 643 (793)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 643 (793)
..+|.+.+.-+.. +.|+... -..+-+..+ .. .+..+=+.+++.....++. .......
T Consensus 314 T~~a~q~l~lL~~-----------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~ 381 (549)
T PF07079_consen 314 TEEAKQYLALLKI-----------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHY 381 (549)
T ss_pred HHHHHHHHHHHHh-----------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHH
Confidence 6666665543221 1221111 111112222 11 1122223344444443321 1111111
Q ss_pred HH---HHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCC----CH
Q 003829 644 LM---YMYSRSEN-FARAEDVLREILAKGIKPDIISYNTVI----FAYCR---NGRMKEASRIFSEMRDSGLVP----DV 708 (793)
Q Consensus 644 l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p----~~ 708 (793)
|+ .-+-+.|. -++|+++++.+.+-. .-|...-|.+. .+|.. ...+..-.++-+-+.+.|+.| +.
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 22 22444454 788888888888741 23433333222 22322 123444444445555667766 22
Q ss_pred HHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 709 ITYNTFVAS--YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 709 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..-|.|..+ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....+++||.++++++.-.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 444555554 5578899888877777766 7888899999998888999999999998887654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00023 Score=64.53 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=127.8
Q ss_pred cCCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 616 RQMVAKTNEILHFMNDS---G-FTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
..+.++..+++.++... | ..++..+ |..++-+....|+.+-|...++++... ++-+..+-..-+.-+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45677777777777642 3 4455554 555666677789999999999999976 4333444333344466789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
+|.++++.+++.+.. |..++..-+.+.-..|+.-+|++-+.+.++. +.-|.+.|.-+...|...|++++|.--+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999996532 6678888888888999999999999999886 77899999999999999999999999999999
Q ss_pred hCCCCCCHH
Q 003829 771 KLDPHVTKE 779 (793)
Q Consensus 771 ~~~~~~~~~ 779 (793)
-..|.++..
T Consensus 182 l~~P~n~l~ 190 (289)
T KOG3060|consen 182 LIQPFNPLY 190 (289)
T ss_pred HcCCCcHHH
Confidence 999997654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00012 Score=73.05 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 691 (793)
+...|++++|+..++.+... .|.|+..+....+.+.+.++..+|.+.++++... .|+ ...+..+..+|.+.|+.++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34455666666666665554 2445555555556666666666666666666654 333 4455555666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 692 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
|..+++........ |+..|..|..+|...|+..+|.....+ .|...|++++|+..+..+.+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 66666665553222 455666666666666655554433322 23345666666666666665
Q ss_pred C
Q 003829 772 L 772 (793)
Q Consensus 772 ~ 772 (793)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 5
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-05 Score=65.31 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK--PNQNTYNSI 749 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l 749 (793)
.++...+..+.+.|++++|.+.|+++.+.... + ....+..++.++.+.|++++|+..++++....-. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677788888888888888888873221 1 1345667888888888888888888888764211 124567778
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 750 VDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 750 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.++.+.|+.++|...++++++..|+++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 88888888888888888888888887544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=64.00 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTV 679 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 679 (793)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445444 4788999999999998864 334 22344466778899999999999999998752222 2355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
...+...|++++|+..++......+ ....+...+.+|...|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8889999999999999977544222 4467789999999999999999999875
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=61.53 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
......+..-+...|++++|.++|+.+.. +.| +..-|..|+.++...|++++|+..|..+...+ +.|+..+-.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445566667788888888888888887 444 44667788888888888888888888888743 234777888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCC
Q 003829 752 GYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
++...|+.++|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888888774
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=74.04 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 722 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 722 (793)
.|+..+...++++.|+++++++.+. .|+ ....++..+...++-.+|.+++++.++.... +...+..-+..|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 3444455556666666666666654 233 2334555555666666666666666653221 4455555566666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 723 LFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+++.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|...++.+.-.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 66777777776665 3443 556666777777777777776666655533
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00083 Score=65.47 Aligned_cols=283 Identities=10% Similarity=0.000 Sum_probs=162.2
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+.+..++..|+..+..+++..+. +..-|..-...+...|++++|..-.+.-.... +-......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 44555566666666666655444 34444444444455555555554444333211 00112222233333333333333
Q ss_pred HHHHHHHHhHHH---H---HHHHH-CCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 579 LALSEEIYSERA---F---LELKK-KGFSPDIPTLNAMIS-IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650 (793)
Q Consensus 579 ~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 650 (793)
.+.++.-..... + ..... ..-+|....+..+-. ++.-.|+.++|..+-..+++.+ ..+....-.=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 333321110000 0 00001 111233344444433 5566889999988887777764 2333332222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIIS-------------YNTVIFAYCRNGRMKEASRIFSEMRDS---GLVPDVITYNTF 714 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 714 (793)
.++.++|...|++.+.. .|+... |..=.+-..+.|++.+|.+.|.+.+.. +..++...|...
T Consensus 216 ~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 77899999999999875 454322 222234567889999999999999982 334455678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV-TKELECKLSDRI 788 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~l 788 (793)
..+..+.|+..+|+.-.+.+++ +.+. ...+..-+.++...+++++|++-++++.+..-+. ...+.+...-.|
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 8888999999999999999886 4433 3445555667778899999999999999986652 223444444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-05 Score=60.07 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
+..++..+...|++++|..+++++.+. .| +...+..++.++...|++++|.+.++...+.+ +.+..++..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 455666777778888888888887773 33 33566777777778888888888888877642 334456777777888
Q ss_pred ccCCHHHHHHHHHHHhhCCC
Q 003829 755 KLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~~~~ 774 (793)
..|++++|...++++.+.+|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 88888888888888877765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.4e-05 Score=76.16 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL 723 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 723 (793)
+..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 344455666666666666666642 22455566666666666666666666666666 333 34556666666666666
Q ss_pred hHHHHHHHHHHHH
Q 003829 724 FVEALDVVRYMIK 736 (793)
Q Consensus 724 ~~~A~~~~~~~~~ 736 (793)
+++|+..++++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.017 Score=60.33 Aligned_cols=152 Identities=10% Similarity=0.032 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP----SIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 368 (793)
|.+++|++++-+|.++. ..|..+.+.||+-.+.++++.- |... -..+|+.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899998888776652 3466677888887777666431 1111 134788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 448 (793)
.+.+..-.. ....+.++....++++-+.+...+ +.|....-.+.+++.+.|.-++|.+.|-+...
T Consensus 816 ~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 816 AKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 888775332 123466666666666554444333 44666777888888899998888887754321
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 003829 449 NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479 (793)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 479 (793)
| ...+..|...+++.+|.++-++
T Consensus 881 ---p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 ---P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1334556666667777666544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=72.44 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
....|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++++.++. .+.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556667777899999999999999874 553 445788888889999999999999976 3446777777788899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
..++++.|+++.+++.+ ..|+. .+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999 66755 799999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00051 Score=73.13 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 003829 633 GFTPSLTTYNTLMYMYSR--S---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG--------RMKEASRIFSE 698 (793)
Q Consensus 633 ~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 698 (793)
..+.+...|..++.+... . ++.++|+.+|+++++. .|+ ...|..+..++.... ++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677777777776432 2 2367888888888885 455 445555554443321 23344444554
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 699 MRDSG-LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 699 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
..... ...+...|..++..+...|++++|...++++++. .|+...|..++..+...|+.++|.+.++++..++|..+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 44421 2224577888877777889999999999999984 57888899999999999999999999999999999876
Q ss_pred H
Q 003829 778 K 778 (793)
Q Consensus 778 ~ 778 (793)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 4
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=61.85 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
.|++++|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+ ..+ +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777788888877773321 1344455577778888888888888777 32 222 2344445577777888888888
Q ss_pred HHHHHH
Q 003829 764 TFVNNL 769 (793)
Q Consensus 764 ~~~~~~ 769 (793)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 777763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0033 Score=54.24 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHH
Q 003829 599 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IIS 675 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 675 (793)
..|++..-..|..++...|+..+|...|++...--+..|....-.+..+....+++..|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 4566666677778888888888888888887765456677777778888888888888888888887652 22 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...+...|...|++.+|+..|+.+.. ..|+...-......+.++|+.++|...+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55667778888888888888888887 556665555566677788877777666655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.3e-05 Score=56.58 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.++..+...|++++|+..++++++. .| +...+..++.++...|++++|..+++++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3567788889999999999998875 35 47788888899999999999999999999888875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0024 Score=63.14 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-ENFARAEDVLREILAK----GIKPD--IISYNTVIFA 682 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~ 682 (793)
+..|...|++..|-..+.. +...|... |++++|++.|++.... + .+. ...+..++..
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3445556666655444443 44566666 8888888888887743 2 111 3456677788
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-----DV-ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPN--QNTYNSIVDG 752 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~ 752 (793)
+.+.|++++|.++|+++...-... +. ..|...+-++...|+...|.+.+++.... ++... ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 888899999999998887743221 12 22334445666778888888888887643 22222 2344556655
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
+ +.||.+...+.+.+--+..+-++
T Consensus 245 ~-~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 245 Y-EEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp H-HTT-CCCHHHHCHHHTTSS---H
T ss_pred H-HhCCHHHHHHHHHHHcccCccHH
Confidence 4 77787777777777766655433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=56.69 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCC
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN-QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 774 (793)
+..+|..++..+...|++++|+..|+++++. .| +...|..++.+|.+.| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888888888888888888888874 34 4777888888888888 68888888888888776
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.034 Score=55.47 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHc---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 613 YGRRQM-VAKTNEILHFMNDSGFTPSLTTYNTLMY----MYSR---SENFARAEDVLREILAKGIKPD----IISYNTVI 680 (793)
Q Consensus 613 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 680 (793)
+.+.|. -++|+.+++.+.+-. +-|...-|.+.. +|.+ ...+.+-..+-+-+...|+.|- ...-|.+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 444554 677777777777642 334443332221 1211 1223333344344445566653 33445555
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 681 FA--YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749 (793)
Q Consensus 681 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 749 (793)
++ +...|++.++.-+-..+.+ +.|++.+|..++-++....++++|.+++.+ ++|+..+++.-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHHH
Confidence 43 5678999999988888888 899999999999999999999999999988 56777776653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00041 Score=62.83 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVAS 717 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 717 (793)
+..+...+...|++++|...|+++.+....+. ...+..++.++.+.|++++|..+++++++ ..| +...+..++.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 44444444555555555555555544321111 23444444555555555555555555554 222 22334444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
|...|+...+..-++.+.. .+++|.+.++++.+.+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 4444444333333222211 1677888888888888876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=54.59 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 003829 634 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG---LVPDVIT 710 (793)
Q Consensus 634 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~ 710 (793)
..|++..--.|..+....|+..+|...|++...--+.-|......+..+....++..+|...++.+.+.. -.| ..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence 3677777778899999999999999999999875456678888889999999999999999999999843 233 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
...+++.|...|++.+|...|+.++. .-|+...-......+.++|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56788899999999999999999997 467766666677778899988887665555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=48.32 Aligned_cols=33 Identities=52% Similarity=0.831 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 383 (793)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00028 Score=66.08 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGR 688 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 688 (793)
.+-+.+.+++++|+..|.+.++.. +.|.+.|..=..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 334455566666666666666653 445555555666666666666666666666653 333 4466666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITY 711 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~ 711 (793)
+++|.+.|++.++ +.|+..+|
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHH
Confidence 6666666666666 55655444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00047 Score=66.90 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=96.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREIL----AKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGL-VPDVI 709 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 709 (793)
.|..|.+.|.-.|+++.|+...+.-+ +.|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35566666777889999988766433 22211 1245788899999999999999999987764 222 12345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIK----QG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
....|+..|.-..++++|+.++.+=+. .+ ..-....+.+|+.+|...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667888999988899999998877432 11 1123567889999999999999999888877655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00081 Score=63.54 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---ChHHHHHH
Q 003829 655 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS---LFVEALDV 730 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~ 730 (793)
++...-++.-+..+ +-|...|..|..+|...|+++.|...|.+..+ +.| +...+..++.++..+. ...++..+
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33344444444442 45788899999999999999999999999988 444 3466677777666443 26778899
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
++++++. .| |......|+..+...|++.+|...++.|++..|.++..
T Consensus 216 l~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 216 LRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9998874 44 57777788888999999999999999999888776553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00056 Score=61.71 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSI 749 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 749 (793)
...|..++..+...|++++|...|++++.....+ ...++..++.+|...|++++|+..++++++. .|+ ...+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 4456666677777788888888888777632222 1246777777888888888888888887763 333 4555666
Q ss_pred HHHHH-------ccCCHH-------HHHHHHHHHhhCCCCCC
Q 003829 750 VDGYC-------KLNQRY-------EAITFVNNLSKLDPHVT 777 (793)
Q Consensus 750 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 777 (793)
+..+. +.|+++ +|..++++++..+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 66666 666665 55666666777777643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.066 Score=56.21 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 346 LPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITP--------DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416 (793)
Q Consensus 346 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (793)
.|....|..+.......-.++-|...|-+...- |++. +...-..-+.+ --|++++|++++-++-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 356667777776666666666666655443321 1110 00001111112 247788888887777655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 417 PNICTFNALIKMHGNRGNFVEMMKVFDEINKC-NCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTL 495 (793)
Q Consensus 417 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 495 (793)
...+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ....
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 23455666777777666666532110 0001134566677777777777777766654321 1123
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
+.++.+...+++-..+-..+.+ +....-.+.+++.+.|.-++|.+.+-+-- .| ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 4445554455444433333322 44555566677777777777776654322 11 1234556666667
Q ss_pred HHHHHHHH
Q 003829 576 DQMLALSE 583 (793)
Q Consensus 576 ~~a~~~~~ 583 (793)
.+|.++.+
T Consensus 895 ~~avelaq 902 (1189)
T KOG2041|consen 895 GEAVELAQ 902 (1189)
T ss_pred HHHHHHHH
Confidence 66666644
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00082 Score=56.61 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=64.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFV 715 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 715 (793)
++..++..+.+.|++++|.+.|+++...... .....+..++.++.+.|++++|...|+.+....... ....+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566667777777787777777764211 113455667777777788888888888777632211 134567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.++.+.|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777788888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0034 Score=67.02 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=106.0
Q ss_pred CCCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHH
Q 003829 597 KGFSPDIPTLNAMISIYGR--R---QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS--------ENFARAEDVLRE 663 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 663 (793)
...+.+...|...+++... . +..++|..+|++..+.. |.....|..+..++... ++...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4456778888888887543 2 33779999999999875 44455666555544322 123455555555
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 664 ILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 664 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
..... ...+...|..+...+...|++++|...++++++ ..|+...|..++..|...|+.++|.+.++++.. +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 44421 233567788887777788999999999999999 667888999999999999999999999999987 4666
Q ss_pred HHHH
Q 003829 743 QNTY 746 (793)
Q Consensus 743 ~~~~ 746 (793)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 5554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-05 Score=47.35 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPT 242 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 242 (793)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.045 Score=53.42 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=153.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA----ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
-.|+++.|.+-|+.|.. |+++...=+. .-.+.|..+.|..+-+..-..- +.-...+...+...+..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 45777777777777775 3333322222 2235677777776666655431 224456666777777777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHc
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSPDIP--TLNAMISIY---GRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSR 650 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 650 (793)
.|+++.+.-.+ ..-+.++.. .-..|+.+- .-..+...|...-.+..+. .||..- --.-..++.+
T Consensus 206 ~AlkLvd~~~~--------~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~ 275 (531)
T COG3898 206 GALKLVDAQRA--------AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFR 275 (531)
T ss_pred HHHHHHHHHHH--------HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHh
Confidence 77777665332 111222221 111111111 1123455566655555543 455433 2234567889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 003829 651 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-SGLVPDV-ITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 728 (793)
.|+..++-.+++.+-+. .|.+..+..+ .+.+.|+ .++.-++++.. ..++||. .....+..+-...|++..|.
T Consensus 276 d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 276 DGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred ccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 99999999999999987 4555444332 3445554 34444444433 1256654 66778888888999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhCCCC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCKL-NQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 775 (793)
.-.+.+.. ..|....|..|.+.-... ||-.+++.++-+.++.-.+
T Consensus 350 a~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 350 AKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 88888776 578888888888875544 9999999999999987433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.014 Score=55.82 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYA---YTSLITTYASNGRYREAVMVFKKMEEEGCK 240 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 240 (793)
...+......+...|+++.|.+.|+.+....+. +... .-.++.++.+.+++++|+..|++..+.-+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 333444455556678888888888887765443 2332 245667777888888888888888776433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00078 Score=57.50 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
....-.+...+...|++++|.++|+-+...+ +-+..-|..|.-++-..|++++|...|..+...++. |+..+-.++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3444456666778889999999998888753 224666778888888888999999999988885432 56788888888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003829 718 YAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~ 737 (793)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888888764
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00047 Score=67.75 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR-SENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367778888888888999999999998653 3455666666655333 56777799999999987 66678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
+...|+.+.|+.+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+. -|+......+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 99999999999999999874 32222 48899999888999999999999998874 3443333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=67.73 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLA--GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
.......++..+....+.+++..++-+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555555666666666666676666666554 12222334457777777777777777777776666777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 397 (793)
+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555656665555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=58.09 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 179 LISMLGKEGKVSVAASLLHGLHKD----GFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 179 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
....+...|++++|.+.|...... +-. .-...|.....+|.+ +++++|+..+++.. ..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~---------------~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI---------------EIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH---------------HHH
Confidence 334455566777766666544211 000 011123333333322 25555555544443 345
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 003829 254 GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG-SLHEEAAGVFEEMKLA----GFSP-DKVTYNALLDVYGKC 327 (793)
Q Consensus 254 ~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~ 327 (793)
...| ++..|-..+..+- ..|... |++++|.+.|++.... |... -..++..++..+.+.
T Consensus 105 ~~~G-~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 105 REAG-RFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHCT--HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HhcC-cHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 5555 5555544444332 234444 5666666666655432 1000 012334445555555
Q ss_pred CChHHHHHHHHHHHH
Q 003829 328 RRPKEAMQVLREMKI 342 (793)
Q Consensus 328 g~~~~A~~~~~~~~~ 342 (793)
|++++|.++|+++..
T Consensus 169 ~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAK 183 (282)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555666555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=54.60 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+++++..+.... +..++..++..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344555556666666666666666542 223355666666666666777777777666663222 234566666666667
Q ss_pred CChHHHHHHHHHHHH
Q 003829 722 SLFVEALDVVRYMIK 736 (793)
Q Consensus 722 g~~~~A~~~~~~~~~ 736 (793)
|++++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777777776666654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.1e-05 Score=46.20 Aligned_cols=31 Identities=39% Similarity=0.591 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGIT 381 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 381 (793)
+|+.++.+|++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.7e-05 Score=46.30 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003829 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKP 241 (793)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 241 (793)
.+|+.++.+|++.|+++.|..+|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00059 Score=65.56 Aligned_cols=103 Identities=14% Similarity=0.027 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP-NQNTYNS 748 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~ 748 (793)
.|......+.+.|++++|...|+.+++ ..|+. ..+..++.+|...|++++|+..|+++++.- -.| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444334566888888888888887 34433 467788888888888888888888887631 011 2556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
++.++...|+.++|+.+++++++..|+.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 7777888888888988888888888886653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=60.79 Aligned_cols=114 Identities=13% Similarity=0.006 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 619 VAKTNEILHFMN-DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 619 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+..+...+..+. ..+..-....|..++..+...|++++|+..|++.......+ ...+|..+..+|...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444443 22222234556777777888899999999999998653222 235788889999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH-------hcCChHHHHHHHHHH
Q 003829 696 FSEMRDSGLVPD-VITYNTFVASYA-------ADSLFVEALDVVRYM 734 (793)
Q Consensus 696 ~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 734 (793)
++++.+ +.|+ ...+..++..+. ..|++++|+..+++.
T Consensus 95 ~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALE--RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 999988 4443 355666666666 788887666555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.027 Score=55.38 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
+.+..++.+|+..+....+. ++.+..-|..-+..+...|++++|..-.+.-+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 44555566666666665554 22234445444555555566666555444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0001 Score=57.26 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003829 651 SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 728 (793)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+ ..+. ......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788888888888875321 1344555578888888888888888877 33 2222 244445677888888888888
Q ss_pred HHHHH
Q 003829 729 DVVRY 733 (793)
Q Consensus 729 ~~~~~ 733 (793)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0027 Score=57.46 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS--LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|+..+++..+.. +.+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 45678888889999999999999999987542222 4678888999999999999999999999863 33566777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.++...|+...+..-++.+.. .+++|.++++++++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 888888887666655444332 25667777777765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.081 Score=52.69 Aligned_cols=132 Identities=13% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKG-IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY-NTFVAS 717 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~ 717 (793)
+|..+++.-.+..-++.|..+|-++.+.+ ..+++.++++++.-+ ..|+...|.++|+--+. ..||...| +..+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 34444444444444555555555555544 333444444444433 23444555555554433 22333222 333334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+...++-+.|..+|+..+++ +..+ ..+|..++.-=..-|+...+..+-+++.+.-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 44445555555555544432 2222 344555554444555555555555555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=52.03 Aligned_cols=79 Identities=18% Similarity=0.349 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhCCCCCCHHHH
Q 003829 211 YTSLITTYASNGRYREAVMVFKKMEEEGC-KPTLITYNVILNVYGKMGMP-------WNKIMALVEGMKSAGVKPDSYTF 282 (793)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~-------~~~a~~~~~~~~~~~~~p~~~~~ 282 (793)
....|..+...+++.....+|+.+++.|+ .|++.+|+.++...++...+ .-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455555666888888888888888887 77888888888877765421 12334445555555555555555
Q ss_pred HHHHHHH
Q 003829 283 NTLISCC 289 (793)
Q Consensus 283 ~~l~~~~ 289 (793)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 5555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=52.60 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGY 753 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 753 (793)
.+++-..|+.++|..+|++.++.|+... ...+..++..|...|++++|+.++++..+. .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444455555555555555555444332 134445555555555555555555555442 121 11222233344
Q ss_pred HccCCHHHHHHHHHHHh
Q 003829 754 CKLNQRYEAITFVNNLS 770 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~ 770 (793)
...|+.++|++++-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45555555555554444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=52.89 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=43.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.+.|++++|+++++++++.. +-+...+..++.+|.+.|++++|..+++++.+.+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 46788888888888888752 3357777788888888888888888888888888874
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0017 Score=66.25 Aligned_cols=97 Identities=11% Similarity=-0.030 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445667899999999999999875 6678889999999999999999999999999863 33577899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVIT 710 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~ 710 (793)
++|...|+++++ +.|+...
T Consensus 87 ~eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 999999999999 5565433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=64.88 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR-NGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+..++. +..+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888889999999999999998642 3345556665555344 56777799999999984 33366788899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+...|+.+.|..+|++.+.. +.++ ..+|...+..=.+.|+.+....+.+++.+.-|+...
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999864 3333 358999999989999999999999999999887443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.02 Score=54.82 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=57.1
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLI 215 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 215 (793)
+-.....+...|+++.|...|+.+.. ..|..+....+...++.++.+.++++.|...+++.++..+.....-+....
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 33444555668999999999999987 344544555566788899999999999999999998876553333333333
Q ss_pred HH
Q 003829 216 TT 217 (793)
Q Consensus 216 ~~ 217 (793)
.+
T Consensus 112 ~g 113 (243)
T PRK10866 112 RG 113 (243)
T ss_pred HH
Confidence 33
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=66.15 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
.+.+.+......+++.+....+++++..++.+.... ....-..+..+++..|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344455666666777777777777777777777654 111222334577777777777777877777777777777877
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
++|.|++.+.+.|++..|.++..+|..++...+..++...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888877777777665555555655555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.21 Score=53.25 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 003829 313 DKVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~A 333 (793)
|..+|.-=|+.+|+..|...|
T Consensus 837 Na~afgF~is~L~kL~dTKsa 857 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRDTKSA 857 (1102)
T ss_pred cchhhccchHHHHhhcccccc
Confidence 555666566777776655444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=62.33 Aligned_cols=133 Identities=11% Similarity=-0.004 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CC-CCCCH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMN----DSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREILA----KG-IKPDI 673 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~ 673 (793)
..|..|.+.|.-.|+++.|+...+.-. +.|- ......+..+.+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356777777777899999987765433 2221 11233567788899999999999999887553 22 11234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--C---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRD--S---GLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+...|.+.|.-..++++|+.++++-+. + +..-....+..|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888899999999877553 1 1112347889999999999999999998887664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=43.35 Aligned_cols=26 Identities=54% Similarity=0.790 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 352 YNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0026 Score=57.06 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 207 DVYAYTSLITTYA-----SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 207 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+..+|..++..+. +.|..+-....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4445555555554 345666667777788888888888888888887765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=43.46 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 316 TYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 316 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.046 Score=50.32 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-----HHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-----ISYNTV 679 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l 679 (793)
+.+.++..+.-.|.+.-....+++..+.+.+.++.....|+..-.+.||.+.|...|++..+..-..|. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666667778888888888888776778888899999999999999999999977754323333 333344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 680 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 680 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
...|.-.+++.+|...+.++...+.. |....|.-+-++.-.|+..+|++.++.|++. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45667778899999999998874332 4555565555666679999999999999874 45544433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00069 Score=50.24 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADS-LFVEALDVVRYMIK 736 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 736 (793)
+..+|..++..+...|++++|+..|+++++ +.|+ ...|..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777777777777777777777 3443 466777777777777 57777777777765
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0086 Score=56.81 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 003829 624 EILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMR 700 (793)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 700 (793)
.-++.-...+ |.|...|-.|...|...|+++.|..-|.+..+. -.++...+..+..++.... ...++..+|++++
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3344444444 789999999999999999999999999999986 2456777888887776553 5788999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 701 DSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIV 750 (793)
Q Consensus 701 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 750 (793)
..+.. |......|+..+...|++.+|...++.|++. .+|+ ..+..++
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~-~~rr~~i 267 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD-DPRRSLI 267 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC-CchHHHH
Confidence 94332 5678888999999999999999999999986 3444 3344444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00068 Score=51.00 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=47.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
...|.+.+++++|+++++.+++.+ +.+...|...+.++.+.|++++|.+.++++++.+|++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 356777888888888888888742 2246677778888888888888888888888888865554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=49.50 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 328 RRPKEAMQVLREMKINGC-LPSIVTYNSLISAYARDG--------LLEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 328 g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 344444444444333221 12233444455555555555555555554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=48.49 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
++..+...|++++|.+.|+++++.. | +...+..++.++...|++++|+..++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566666666666666666632 3 335566666666666666666666666655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.016 Score=49.86 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
....-+...|++++|..+|+-+.-.+.. +..-+..|+.++-..+++++|+..|..+...+ .-|+..+-..+.++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 4445566788888888888888775443 55666777777878888888888888876543 234555667788888888
Q ss_pred CHHHHHHHHHHHhhCCCCCC
Q 003829 758 QRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~~~~ 777 (793)
+.++|+.-|+.+++. |+..
T Consensus 120 ~~~~A~~~f~~a~~~-~~~~ 138 (165)
T PRK15331 120 KAAKARQCFELVNER-TEDE 138 (165)
T ss_pred CHHHHHHHHHHHHhC-cchH
Confidence 888888888888873 4433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.11 Score=52.10 Aligned_cols=173 Identities=11% Similarity=0.077 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSR---SENFARAEDVLREILAKGIKPDIISYN 677 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 677 (793)
.+...++-.|....+++...++.+.+.... +.....+--..+.++.+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888999999999999998651 22233334456667777 899999999999966655677888998
Q ss_pred HHHHHHH----H-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH----HHHHHH----HHHHHcCCC
Q 003829 678 TVIFAYC----R-----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV----EALDVV----RYMIKQGCK 740 (793)
Q Consensus 678 ~l~~~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~~~ 740 (793)
.++..|- . ....++|...|.+.-+ +.|+...=-.++..+...|... +..++. ..+.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 8887763 2 2247888888888887 4565533333333444444322 222222 222234432
Q ss_pred ---CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 741 ---PNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 741 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.|-..+..++.++.-.|++++|..++++|.+..|..-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 23445567888899999999999999999999877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.084 Score=56.93 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV--TYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 283 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
..-+...++...++-|..+.+ ..+..++.. ....-.+-+.+.|++++|...|-+-... .+|. .+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 344555555566666655432 222222211 1222233444566666666665554332 2222 2344455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
...++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 555566666666666666543 3344455666666666666655554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.28 Score=48.82 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
|..++......|+.+.|..+++. +|+.. .=|-.+.+.|+.+.| +.+..+.| .||. +|.+|+..-
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~ 66 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLK 66 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHH
Confidence 45566667778888888776652 22221 224455677777766 45555555 3343 355555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=48.53 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=42.0
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
...|++++|.++|+.+....+. +..++..++.+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777766544 6677777777777777777777777777765 3454444433
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.089 Score=54.80 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+..-+..+..+|.+++|.++- +......-|..|......+=+++-|++.|-+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------------ 614 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL------------------ 614 (1081)
T ss_pred ccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc------------------
Confidence 334445566777777765432 12223445666666666666667777666665432
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 256 MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 256 ~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
.+-+.+.-+++++++|-.|+.... ...|+-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 233444456677777777776532 3345566778888877743
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.053 Score=50.50 Aligned_cols=175 Identities=18% Similarity=0.104 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
..+......+...|++.+|...|+.+....+. ....+.-.++.++.+.|+++.|...|+++.+.-+.-....+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 34444555566778888888888877654222 2334566677778888888888888888776533222222222222
Q ss_pred HHHhcC---------C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 252 VYGKMG---------M---PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA 319 (793)
Q Consensus 252 ~~~~~g---------~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 319 (793)
+.+... . ...+|...|+ .++.-|=...-..+|...+..+... =...--.
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~---------------~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFE---------------ELIKRYPNSEYAEEAKKRLAELRNR----LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHH---------------HHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHH---------------HHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHH
Confidence 222111 0 1112222222 2333333334444554444444322 0111123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHH
Q 003829 320 LLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 368 (793)
+...|.+.|.+..|..-++.+++. .+-+ ..+...++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 455666667777776666666654 1111 12345556666666665533
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.013 Score=56.56 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VIT 710 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~ 710 (793)
..|...+..+.+.|++++|+..|+.+++. .|+ ...+..++.+|...|++++|...|+.+.+. .|+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 33555555556678899999999998876 333 357778888899999999999999999873 232 355
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 743 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 743 (793)
+..++.++...|+.++|..+|+++++. .|+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 666777888899999999999998874 3543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.035 Score=45.86 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=46.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASY 718 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 718 (793)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445555666666666666665554433 234445555566666666666666666552 122 12222233355
Q ss_pred HhcCChHHHHHHHHHHH
Q 003829 719 AADSLFVEALDVVRYMI 735 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~ 735 (793)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666666655544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.043 Score=51.11 Aligned_cols=174 Identities=14% Similarity=0.024 Sum_probs=106.6
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH--HHHH
Q 003829 136 LLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY--AYTS 213 (793)
Q Consensus 136 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ 213 (793)
+-.........|++..|...|+.+.. ..|..+....+...++.++.+.|++..|...++.+++..+..... ++-.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~---~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLID---RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH---H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 33444555678999999999999987 345566788889999999999999999999999988764432222 2222
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 003829 214 LITTYASN-----------GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTF 282 (793)
Q Consensus 214 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~ 282 (793)
++.++... +...+|+..|+.+.+. |-... -..+|...+..+... =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~-y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSE-YAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------------TTST-THHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH---------------CcCch-HHHHHHHHHHHHHHH----HHHHH
Confidence 33332221 1234555555555544 33333 344554444444321 01111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 003829 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDK----VTYNALLDVYGKCRRPKEAM 334 (793)
Q Consensus 283 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~ 334 (793)
..+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23456788999999999999999886 2333 34566788888888877543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0093 Score=55.85 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQ-GCKPN-QNTYNSIV 750 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~ 750 (793)
.|+.-+ .+.+.|++.+|...|...++....- ....+.-|+.++...|++++|..+|..+.+. +-.|. ++.+..|+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 354444 3567788999999998888842221 1255677888999999999999999988763 22222 57888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+..+.|+.++|..+|+++.+..|+.+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 889999999999999999999999876654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.15 Score=47.16 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHH
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFN-----TLISAY 499 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~l~~~~ 499 (793)
++..+...|.+.-....+.++++.+.+.++.....|.+.-.+.|+.+.|...|++..+..-..+..+++ .....|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333333344444444444444443333334444444444444444444444444333322122222222 222345
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHH
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYS 563 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 563 (793)
...+++..|...+.+....+.. ++..-|.-.-++.-.|+..+|.+.++.|... .|...+-+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5667788888888887776544 5555554444455568888999999988875 44444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.38 Score=47.27 Aligned_cols=281 Identities=16% Similarity=0.141 Sum_probs=158.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCC
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLI--TTYASNGRYREAVMVFKKMEEEGCKPTLITY----NVILNVYGKMGM 258 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~g~ 258 (793)
..|+-..|.++-.+..+. +.-|..-.-.|+ +.-.-.|+++.|.+-|+.|.. |..+- ..|.-.-.+.|
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~G- 168 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLG- 168 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcc-
Confidence 466777777776654322 111222222222 222346888888888888875 33332 22222334566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCChHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG-FSPDKVT--YNALLDVYG---KCRRPKE 332 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~ 332 (793)
..+.|...-++.-..-.. -.-....++...|..|+++.|+++.+.-+... +.+++.- -..|+.+-. -..+...
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 677777777776654332 34566777777888888888888887665442 2334322 223332211 1235566
Q ss_pred HHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 333 AMQVLREMKINGCLPSIV-TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
|...-.+..+ ..||.+ .-..-..++.+.|++.++-.+++.+-+....|+. . .+..+.+.|+. +..-++...
T Consensus 248 Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHH
Confidence 6666555544 445544 3334456778888888888888888776444442 1 12223344443 222222222
Q ss_pred HC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHc
Q 003829 412 SA-GCK-PNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG-QNGMDSEVSGVFKEMKRA 483 (793)
Q Consensus 412 ~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~ 483 (793)
+. ..+ .+......+.......|++..|..--+..... .|....|..|...-. ..|+-.++...+.+..+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 112 24556666677777778887777666655543 566777777776654 348888888888777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=49.30 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCK---PN-QNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
.+|+.++.+|...|++++|++.++++++. ... |+ ..++..++.+|...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777777777777777777632 011 12 45567777777777777777777777765
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=52.05 Aligned_cols=30 Identities=40% Similarity=0.432 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 395 (793)
+-|++++++|...|+-||..++..+++.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 344555555555555555555555555553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.064 Score=55.80 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003829 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVF 464 (793)
Q Consensus 385 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (793)
..+.+=+..|...|.+++|.++-.- |+ ...-|..|..-....=+++-|.+.|.++...
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------- 614 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL---------------- 614 (1081)
T ss_pred ccccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc----------------
Confidence 3344445567777888877654221 11 1222444444444444555555555544321
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCC
Q 003829 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYN-----AVLAALARGGM 539 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~ 539 (793)
.+-+.+.-++++.++|-.|+... +...++-.|++.+|.++|.+--..+- -.+.|+ -+..-+...|.
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCC
Confidence 12222333455666666555443 23334445666666666544211100 011111 12233444454
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
.++-..+.++-.+- .-+..--......+...|+.++|+.+.-+----+...++..+--..+..+...+...+.+...+
T Consensus 686 ~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 44444333332110 0011111223444556677777766532210001111111111123445566666666677778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHHcCC
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII-----------SYNTVIFAYCRNGR 688 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~ 688 (793)
.-|-++|.+|-+. ..++......+++.+|..+.++..+. .+|+. -|..--.+|.+.|+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 8888888887543 25677888899999999998887763 44431 12223356777777
Q ss_pred HHHHHHHHHHHHH
Q 003829 689 MKEASRIFSEMRD 701 (793)
Q Consensus 689 ~~~A~~~~~~~~~ 701 (793)
-.+|.++++++..
T Consensus 833 ~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 833 QREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHhhh
Confidence 7788877777765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.39 Score=47.31 Aligned_cols=195 Identities=10% Similarity=0.102 Sum_probs=109.3
Q ss_pred cCC-CHHHHHHHHHHHHhHHHHHH-HHHCCCCCC-----HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHH
Q 003829 571 NGR-EIDQMLALSEEIYSERAFLE-LKKKGFSPD-----IPTLNAMISIYGRRQMV---AKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 571 ~~~-~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ 640 (793)
+.+ +++.|..++++..+ .+.. -......++ ..++..++.+|...+.. ++|..+++.+... .+..+.+
T Consensus 47 ~~~~~~~~a~~wL~~a~~--~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~ 123 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYD--ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEV 123 (278)
T ss_pred HcCCChHHHHHHHHHHHH--HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHH
Confidence 445 88888888877654 1111 111122233 24667778888777654 4566666667544 2334566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HH----H
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY---CRNGRMKEASRIFSEMRDSGLVPDVI-TY----N 712 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~----~ 712 (793)
+-.-+..+.+.++.+++.+++.+|+.. +.-....+...+..+ .. .....|...++.++...+.|... .. .
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 656677777789999999999999986 332344555555544 33 33467777777777644544332 11 1
Q ss_pred HHHHHHHhcCC------hHHHHHHHHHHHH-cCCCCCHHH---HHHH----HHHHHccCCHHHHHHHHHHHh
Q 003829 713 TFVASYAADSL------FVEALDVVRYMIK-QGCKPNQNT---YNSI----VDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 713 ~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~---~~~l----~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..+......++ .+...+++....+ .+.+.+..+ ...| +..+.+.+++++|.++|+-++
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11122222222 3333444443222 111222222 2233 334778999999999998655
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.15 Score=49.49 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH------
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIK-----PDIISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDV------ 708 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~------ 708 (793)
+..++.-.+.++++++.|+...+.-.. ....++..|...|....++++|.-+..++.+ .++. |.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 334444444455555555544432100 0123444445555555555555544444433 1111 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIK----QGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.....+..+|...|+.-+|.+..++..+ .|-.+- ......+++.|...|+.+.|..-|+.+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1123334445555555555555544432 221111 2233344455555555555554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.57 Score=47.16 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCCH
Q 003829 151 LALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDG---FDIDVYAYTSLITTYAS---NGRY 224 (793)
Q Consensus 151 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~ 224 (793)
+..+.+..++. +.+.....+..+...++-+|....+++...++++.+.... ...+..+-...+-++-+ .|+.
T Consensus 121 ~l~~~L~~i~~--rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 121 ELAKELRRIRQ--RLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHH--hhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 33444455544 2222234566666777777889999999999999886651 11123333344455556 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
++|+.++..+....-.++..+|..+++.|..
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 9999999986655557788888888887743
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.026 Score=55.82 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAK-----GIKPD---------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV 708 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 708 (793)
.-.+.|.+.|++..|...|+++... +..+. ..+++.+..+|.+.+++.+|++..++.++.+.. |.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-ch
Confidence 3455677788888888888776643 11111 123445555666666666666666666663222 44
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCC
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDP 774 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 774 (793)
..+..-+.+|...|+++.|+..|+++++ +.|+ ..+-+-|+.+--+..++.+ ..++|..|+..-.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5555556666666666666666666665 3443 3333344433333333222 3555666655533
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=1.2 Score=48.71 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=123.7
Q ss_pred cccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 003829 133 GADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYT 212 (793)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (793)
.-++..-+..+.+-..+..|+.+-..-.. +............+.|.+.|++++|...+-+-+.. .+| .
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 34455566666677778888777665322 11123445667778888999999999888776643 121 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG 292 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 292 (793)
.++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.+ +.++..++.+... .|.. ..-....+..|.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh
Confidence 4666777888888888999999999865 6666788999999999 8888777766543 2211 11245566777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
+-.++|..+-..... .......++ -..|++++|++.+..+
T Consensus 477 nyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777777766544432 333344443 4678999999999876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.95 Score=47.57 Aligned_cols=187 Identities=12% Similarity=0.007 Sum_probs=95.2
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
+..+|..-+.--.+.|+.+...-+++...-. +..-...|-..+.-....|+.+-|..++....+--.+..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~----------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP----------CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH----------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 4456666666666777777777777654320 011122333344444444777777666666555433222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCH--HHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEAS---RIFSEMRDSGLVPDV--ITY 711 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~--~~~ 711 (793)
+.+--.-....-..|++..|..+++.+.+. + |+. ..-..-+....+.|+.+.+. .++....+....+.. ..+
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 222111122233456788888888887765 3 442 22223344455667777766 333333221111111 122
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 712 NTFVA-SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 712 ~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
...++ .+.-.++.+.|..++.++.+. ++++...|..++......+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22222 223346677777777777764 3445666666666555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.14 Score=52.32 Aligned_cols=108 Identities=11% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIV 750 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 750 (793)
..+-..+..++.+.|+.++|.+.+.+|.+....- ...+...|+.+|...+.+.++..++.+.-+...+.. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3344557778888999999999999998742221 235778899999999999999999998754433333 34555443
Q ss_pred HHHHccCC---------------HHHHHHHHHHHhhCCCCCCHHH
Q 003829 751 DGYCKLNQ---------------RYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 751 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
-.+...|+ -..|++.++++.+.+|..+...
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 33333333 1347789999999999877643
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.059 Score=54.81 Aligned_cols=160 Identities=11% Similarity=0.048 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 618 MVAKTNEILHFMNDS-GFTP-SLTTYNTLMYMYSR---------SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..+.|..+|.+.... ...| ....|..+..++.. ..+..+|.+..++..+.+ +.|......++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 567788899998822 1233 35556666665432 234677888888888875 45788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 762 (793)
++++.|...|+++.. +.||. .+|...+..+.-.|+.++|.+.+++.++ +.|. ..+....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 999999999999999 67765 6777778888889999999999999887 4564 33334444466655 56788
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHH
Q 003829 763 ITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+.+|-+-.+. +...+...+++
T Consensus 427 ~~~~~~~~~~--~~~~~~~~~~~ 447 (458)
T PRK11906 427 IKLYYKETES--ESHRVIIDNIL 447 (458)
T ss_pred HHHHhhcccc--ccchhhHHHHH
Confidence 8888664443 33334444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0066 Score=46.27 Aligned_cols=63 Identities=27% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLV-PD-VITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.+++.+..+|...|++++|+++|+++++. |-. |+ ..++..++.+|...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777777777777777642 111 12 25667777777777777777777777653
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.79 Score=46.08 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
-+...|..++..+...+..++.+++++++... ++.-..+|..-+.+-....++.....+|.+.+... .++..|...+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 35566777777777777777777777777653 33345567666666666677777777777766553 3455666655
Q ss_pred HHHHh
Q 003829 251 NVYGK 255 (793)
Q Consensus 251 ~~~~~ 255 (793)
....+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 55444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.19 Score=51.24 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=96.1
Q ss_pred CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 598 GFSPD-IPTLNAMISIYGR---------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 598 ~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
.+.|+ ...|..+..++.. .....+|.+.-++..+.+ +.|......+..+....++++.|...|++....
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH 367 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence 34554 4556655554432 234567778888888877 678888888888888888899999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 668 GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 668 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.|| ..+|......+.-.|+.++|.+.+++.++ ..|.. .+....+..|+..+ .++|+.+|-+-.
T Consensus 368 --~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 368 --STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 555 66787888888889999999999999888 55533 34445555777655 678888877644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.81 Score=45.64 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 003829 422 FNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (793)
Q Consensus 422 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (793)
.+.-+.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++-.. .-.+..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555566777777777766653 56777888888888888888776665332 1134667778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM 550 (793)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 550 (793)
.|...+|..+...+. +..-+..|.++|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888877776621 134566677888888887765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.041 Score=54.48 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=31.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++.+..+|.+.+++.+|+..-++.+..+ +.|.....--..+|...|+++.|+..|+++++
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555542 33444444445555555555555555555555
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=43.72 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|...+++++|.++++++++ ..| +...+...+.++...|++++|.+.+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34455555555555555555 222 234444555555555555555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.2 Score=45.87 Aligned_cols=86 Identities=20% Similarity=0.062 Sum_probs=43.1
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
.+.....++...++++.|-..+....+.... +...|+ ..+.++.|.-+.+++.+..- -+..|+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfh-------AAKayEqaamLake~~klsE--vvdl~eKA 97 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHH
Confidence 3455555666667777777666665431111 111111 12233444444444433211 23345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003829 215 ITTYASNGRYREAVMVFKKME 235 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~ 235 (793)
...|..+|..+-|-..+++.-
T Consensus 98 s~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHH
Confidence 666777777777666666553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.081 Score=46.29 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNT 745 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 745 (793)
..++..+...|++++|..+++.++. ..| |...|..++.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455555666666666666665 333 34555666666666666666666655553 2355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.03 Score=56.79 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666666666666666666666664 3442 2466666666666666666666666666
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.046 Score=46.05 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+..-+....+.|++++|.+.|+.+...-... ...+...++.+|.+.|++++|+..+++.++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33344455667888899988888888742111 2356678888888888888888888888874
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.13 Score=43.31 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=75.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVAS 717 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~ 717 (793)
.-.....+.|++++|.+.|+.+... .+.. ...-..++.+|.+.|++++|...+++.++ +.|+. .-|.....+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHH
Confidence 3344566789999999999999986 2322 45677889999999999999999999999 55543 344444444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
++.-...+ ..+..+. +..-|. +....|...|+++++..|++..
T Consensus 92 L~~~~~~~---~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCChh
Confidence 44332222 2233332 122232 2234778888888888887654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.95 Score=43.37 Aligned_cols=225 Identities=14% Similarity=0.053 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 538 GMWEQSEKIFAEMKGGRCK-PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR 616 (793)
Q Consensus 538 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 616 (793)
+....+...+......... .....+......+...+++..+...+...... .........+......+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--------ELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccchHHHHHHHHHHHHHH
Confidence 3344444444444433111 12344555555566666666666655443210 12233444555666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMY-MYSRSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
+.+..+.+.+.........+ ......... .+...|++++|...+++...... ......+......+...++.+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 77777777777777643222 122222223 67778888888888888755211 012333444444466778888888
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 694 RIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 694 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
..+.++.+. .++ ...+..+...+...+++++|...+....+. .|+ ...+..+...+...|+.+++...+.+..
T Consensus 188 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 188 ELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888873 333 566777778888888888888888888763 333 4455555656666677888888888888
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 88775
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=54.17 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT------TYNTLMYMYS----RSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
.+..++...+-.|+-+.+++.+.+..+.+---.+. .|...+..++ ...+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35556666777889999999888876642111111 1333333332 255789999999999986 56665
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 003829 675 SYNT-VIFAYCRNGRMKEASRIFSEMRDS--GL-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI- 749 (793)
Q Consensus 675 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l- 749 (793)
.|.. -...+...|+.++|.+.|+++... .. ......+.-+++++.-.++|++|.+.+..+.+.+ .-...+|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5544 346778889999999999987752 11 1134567788889999999999999999999753 3334444433
Q ss_pred HHHHHccCCH-------HHHHHHHHHHhhC
Q 003829 750 VDGYCKLNQR-------YEAITFVNNLSKL 772 (793)
Q Consensus 750 ~~~~~~~g~~-------~~A~~~~~~~~~~ 772 (793)
+-++...|+. ++|.++++++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3446677888 8899999887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.14 Score=44.32 Aligned_cols=89 Identities=10% Similarity=0.000 Sum_probs=57.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
--+...|++++|..+|.-+.-.+ +-+..-|..|..++...+++++|+..|......+ ..|...+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33456677777777777776654 3345556666666777777777777777666543 234445556667777777777
Q ss_pred HHHHHHHHHHH
Q 003829 691 EASRIFSEMRD 701 (793)
Q Consensus 691 ~A~~~~~~~~~ 701 (793)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777766
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.5 Score=45.98 Aligned_cols=131 Identities=14% Similarity=0.035 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCH--
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGF-----TPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKPDI-- 673 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-- 673 (793)
....+..++...+.++++++.|+...+.-- .....++-.|...|.+..|+++|.-+..+.... ++..-.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 445577777888899999999998875411 112346788999999999999999888776542 222111
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 674 ---ISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPD-VITYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 674 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
.+...|.-++...|...+|.+..++..+ .|-.+- ......++..|...|+.+.|..-|+.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2333455678888999999999888765 343332 2445788889999999999998888865
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1 Score=42.21 Aligned_cols=180 Identities=17% Similarity=0.058 Sum_probs=95.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 257 (793)
+......|++++|.+.|+.+..+.+. ....+.-.++.++.+.++++.|+..+++....-+......|-.-|.+++..-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344788888888888888765332 2345666677777888888888888888877643333334444444443221
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 003829 258 ------MPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY--NALLDVYGKCRR 329 (793)
Q Consensus 258 ------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~ 329 (793)
++...+...+..+.. ++.-|=...-...|..-+..+... ... -.+.+.|.+.|.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~------LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA------LAGHEMAIARYYLKRGA 182 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 122333333322221 111111111112222222222111 111 134566777778
Q ss_pred hHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 330 PKEAMQVLREMKINGCLPSI---VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+..|..-+++|++. .+-.. ..+-.+..+|...|-.++|.+.-.-+..+
T Consensus 183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88887777777765 22222 24455666777777777777665555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.22 Score=40.53 Aligned_cols=91 Identities=20% Similarity=0.043 Sum_probs=63.3
Q ss_pred HhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHH
Q 003829 142 GLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY---AYTSLITTY 218 (793)
Q Consensus 142 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~ 218 (793)
++...|+.+.|++.|...... .+...++|+.-..++.-.|+.++|++-+++.++..-+-+.. +|..-...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 455678888888888887662 23467788888888888888888888888776542222322 344444556
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 003829 219 ASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~ 238 (793)
...|+.+.|..-|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 67788888888888877766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.021 Score=57.83 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 671 PDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.+...|+.+..+|...|++++|...|++.++ +.|+. .+|..++.+|...|++++|+..++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3578899999999999999999999999999 66764 358999999999999999999999999852 22 22
Q ss_pred HHHHH--HHHccCCHHHHHHHHHHHhhCCC
Q 003829 747 NSIVD--GYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 747 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
..+.. .+....+.++..++++.+.+-+-
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22211 12233344577777777777753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.097 Score=42.53 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+...|+.+.|++.|.+.+. +-| ....||.-..++.-+|+.++|++-++++++
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444555555555555554 222 334455555555555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=38.86 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.++..++..|.+.|++++|+++++++++.+|++...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 345667777777777777777777777777775543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.3 Score=45.69 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------ 742 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------ 742 (793)
...+|..++..+.+.|+++.|...+.++...+... .+.+....+..+-..|+..+|+..++..++..+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777788888888888888888877643111 233444555566677777888877777665111100
Q ss_pred ---------------------------HHHHHHHHHHHHcc------CCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 ---------------------------QNTYNSIVDGYCKL------NQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ---------------------------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
...+..++...... ++.+++...|+++.+..|+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 12334444444455 7788888999999888876544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.44 Score=42.30 Aligned_cols=122 Identities=7% Similarity=-0.050 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISY--NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
+.....+++....-.-...++ ..+...+...|++++|...++..+.....-+. .+--.|.+.....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555566554211111122 23446788899999999999988863222111 33356777888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 732 RYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 732 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
....+.+. .......-++.+...|+.++|+..|+++++.++++...
T Consensus 150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 98765433 23445567888999999999999999999998665554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.4 Score=44.72 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
+.+.-+.-+...|+..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .+.-|.-+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34455556677889999988877765 4688888888899999999988666554432 2456788888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
+.|+.+||.+++.+.-. .. -.+.+|.+.|++.+|.+..
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 99999999999887532 12 4566777888888876654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3 Score=44.05 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..++.---.....+.+...+..++.. ++.-.--|-.....-.+.|..+.+.++|++-... ++.++..|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4455555555444444455666666666644 2222234555555556677777888888777653 4556666766666
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 003829 252 VYGKMGMPWNKIMALVEGMKSA-GVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMKLA 308 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 308 (793)
.++....+.+.....|+..+.. |..- ....|...|..-...++......++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6555433556666666665542 2211 2223444444444555555555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.6 Score=40.90 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSG--FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
..-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|+..+++.++.-..-...-|...+.+++
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 333444567899999999999998752 122345566778889999999999999999998632222334545554443
Q ss_pred Hc-------CC---HHHHHHHHHHHHHC----CCCCCHHH---H---------HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 685 RN-------GR---MKEASRIFSEMRDS----GLVPDVIT---Y---------NTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 685 ~~-------g~---~~~A~~~~~~~~~~----~~~p~~~~---~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
.- .+ ..+|..-|+++++. ...||... + ...++-|.+.|.+-.|+.-+++|++.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~- 196 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN- 196 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 21 23 33455555555552 22333311 1 34566788999999999999999985
Q ss_pred CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 739 CKPN---QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 739 ~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+-. ...+-.+..+|.+.|-.++|.+.-+-+....|+..
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3332 35566778899999999999888777777777654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.017 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
..|..++.++.+.|++++|++.++++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.1 Score=45.72 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKM 234 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 234 (793)
+...++..+...|+++.|..+.+.+....+. +...|..++.+|...|+..+|.++|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555555554332 5555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=45.84 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=63.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP------DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGY 753 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 753 (793)
+-+.+.|++++|..-|.++++. .| ....|..-+.++.+.+.++.|++-..+.++.+ |. ......-+.+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 3456677778887777777773 22 12456666677777788888888888777743 32 33444445667
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 754 CKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.+..++++|++=|+++++.+|....
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 7777888888888888888776553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.5 Score=42.02 Aligned_cols=151 Identities=7% Similarity=0.015 Sum_probs=95.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
.....|++.+|...|+...+.. +.+....-.++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999888888764 445566677888899999999999999887754211111122223344444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 692 ASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-PNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 692 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
...+-.+.-. .| |...-..+...|...|+.++|.+.+-.+++++.. -|...-..++..+.--|..+.+...+
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4444444433 34 5666778888888889999998888887754321 13444556666666555444444333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.26 Score=47.30 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=110.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCC
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGR 688 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 688 (793)
+...|++.+|...++++.+. .|.|...+..--++|.-.|+.+.-...+++++-. ..+| ......+..++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888888888875 5778888888888888899988888888888854 2334 3344455667788899
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP----NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
+++|.+.-++.++ +.+ |.-.-.++...+.-.|++.++.++..+-... ..- -...|-+.+-.+...+.++.|.
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999888 444 5566678888888899999999887764321 111 1233445555666778999999
Q ss_pred HHHHHH
Q 003829 764 TFVNNL 769 (793)
Q Consensus 764 ~~~~~~ 769 (793)
++|.+=
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 988653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.51 Score=50.28 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=84.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYN-TLMYMYSRSENFARAEDVLREILAKG--I-KPDIISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~ 691 (793)
....+.|.++++.+.+. -|+...|. .-...+...|++++|++.|++..... . ......+.-+++++.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45788999999999986 45555554 34566788999999999999876421 1 1224556677888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCh-------HHHHHHHHHHH
Q 003829 692 ASRIFSEMRDSGLVPDVITYN-TFVASYAADSLF-------VEALDVVRYMI 735 (793)
Q Consensus 692 A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~ 735 (793)
|.+.|.++.+.+-. ...+|. ..+.++...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999985333 234443 333345577888 88888888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.68 E-value=4 Score=44.22 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=175.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD--ESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (793)
+|.-+...+.+..|+++-+.+...-.. +...|.....-+.+..+. +++.+.+++-..... .+...|..+.......
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 455566667777777776655432111 134555555555544221 222222222222111 2344566666666677
Q ss_pred CCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 003829 433 GNFVEMMKVFDEINKCNCK----PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQA 508 (793)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 508 (793)
|+.+.|.++++.=...+.. .+..-+...+.-..+.|+.+-...++..+...- +...+...+ .+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------Hhchhh
Confidence 8888777776542111100 011223344455556666666666665555431 122222221 234455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHhcC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 509 MSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA--EMKGG-RCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
..+|.+..+.. +..+ +-+.|. .++-.++...|. ..... .+.+-..........+.+.....-..+..++.
T Consensus 592 ~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 56666555431 1111 111222 222222222221 10000 01222233344455555554433222222222
Q ss_pred Hh-HHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 586 YS-ERAFLELK-KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 586 ~~-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
.. ...+..+. +.+..-..-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11 01111111 12222223344445556667799999988877664 57888888888899999999887666554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
.. .+.-|.-...+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+..-+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 43 244566778899999999999999876543 11567789999999999877554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.18 Score=47.49 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCCH
Q 003829 185 KEGKVSVAASLLHGLHKDGFD--IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCK-P-TLITYNVILNVYGKMGMPW 260 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~~~ 260 (793)
+.|++..|...|...++..+. ....++-.|+.++...|++++|..+|..+.+.-+. | -...+--|.....+.| +.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~-~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG-NT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc-CH
Confidence 344455555555554443221 11223334555555555555555555555443111 1 1233444444444444 45
Q ss_pred HHHHHHHHHHHhC
Q 003829 261 NKIMALVEGMKSA 273 (793)
Q Consensus 261 ~~a~~~~~~~~~~ 273 (793)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.02 Score=35.01 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+|..++.+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.3 Score=38.50 Aligned_cols=126 Identities=9% Similarity=0.066 Sum_probs=82.6
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDI-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI---TYNTFVASYAADSL 723 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 723 (793)
+.+.+..++|+.-|..+.+.|...-+ ....-+.......|+...|...|+++-.-...|... .-..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34566778888888888877644221 122233445677788888888888887744444331 22233345668888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 724 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+++.....+-+...+-+-....-..|+-+-++.|++.+|..+|..+..-.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 88888777776544322224455677878888999999999998887743
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.1 Score=39.47 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (793)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (793)
|..-..+|-...++++|...+.+..+. .+.|...|. - ...++.|.-+.+++.+. ..-...|+-...+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455666667777777766665532 122222111 1 22334455555555443 1123345556666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHhccCCHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA---GFI--PERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~g~~~ 506 (793)
+|..+.|-..+++.-+. ..+.++++|+++|.+...- +-. --...+..+.+.+.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77776666666554321 2233444444444443321 000 01112334445566666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 507 QAMSIYKRMLEA----GVTPD-LSTYNAVLAALARGGMWEQSEKIFAEMKGG---RCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 507 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
+|-..+.+-... .-.++ -..|...|-.+....++..|...+++--.. ...-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665555433211 11111 123445555666677888999988874332 1223566777788776 45677666
Q ss_pred HHHH
Q 003829 579 LALS 582 (793)
Q Consensus 579 ~~~~ 582 (793)
..+.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.3 Score=38.31 Aligned_cols=124 Identities=9% Similarity=0.177 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 687 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 687 (793)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.++. ..+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555666677777777888777765 356667777777777653 3444444442 112333445666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD-SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
.++++..++.++-. +...+..+... ++++.|++++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777766532 11222223333 6677777766651 24556666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.4 Score=45.32 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 293 (793)
++.-..+..+.+.-++.-.+.++. .||..+..+++..-.. . ...++++++++..+.|-. .+.+..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA-~-Ti~Eae~l~rqAvkAgE~-----------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAEEEA-S-TIVEAEELLRQAVKAGEA-----------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccc-c-CHHHHHHHHHHHHHHHHH-----------hhchhh
Confidence 333344555566656666666553 4554433333322111 1 356777777776654311 011100
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLLEEAMELK 372 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 372 (793)
..+..-..++.+......+-..+-..|..+.-+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 000001112222222222223333456666667788888888888876542221 2235566777888888888888877
Q ss_pred HHHHHc
Q 003829 373 TQMVEI 378 (793)
Q Consensus 373 ~~m~~~ 378 (793)
.+..+.
T Consensus 319 ~kYdDi 324 (539)
T PF04184_consen 319 AKYDDI 324 (539)
T ss_pred HHhccc
Confidence 776543
|
The molecular function of this protein is uncertain. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.33 E-value=6.2 Score=44.12 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHH
Q 003829 262 KIMALVEGMK-SAGVKPD--SYTFNTLISCCR-RGSLHEEAAGVFEEMKLAGFSPDKV-----TYNALLDVYGKCRRPKE 332 (793)
Q Consensus 262 ~a~~~~~~~~-~~~~~p~--~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~ 332 (793)
.|+..++.+. +..+.|. ..++..+...+. ...++++|+.++++.....-.++.. +...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3444455555 3333333 334555555544 6778888888888765442222221 2335567777766666
Q ss_pred HHHHHHHHHHcC----CCCChhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HcCCHHH
Q 003829 333 AMQVLREMKING----CLPSIVTYNSL-ISAYARDGLLEEAMELKTQMVEIG---ITPDVFTYTTLLSGFE--KAGKDES 402 (793)
Q Consensus 333 A~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 402 (793)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+...- ..+-...+..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888765541 11112233333 333333478888888888876542 2333444455555544 3455666
Q ss_pred HHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 003829 403 AMKVFEEMRSAGC---------KPNICTFNALIKMHG--NRGNFVEMMKVFDEI 445 (793)
Q Consensus 403 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~ 445 (793)
+.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666533211 234556666666554 566766666666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.19 E-value=6.7 Score=43.70 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=130.6
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHh-------hHHHHHH-HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNEL-------TYSSLLH-AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIP 604 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (793)
......++.+|..++.++...-..|+.. .+..+-. .....|+.+.+.++.+.... ..-.....+...
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~-----~L~~~~~~~r~~ 498 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV-----QLPEAAYRSRIV 498 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hcccccchhhhh
Confidence 3445678888888887765432122211 2333322 22357889999998877643 333334445667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHccCCH--HHHHHHHHHHHHCC---CC---C
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM-----YMYSRSENF--ARAEDVLREILAKG---IK---P 671 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~A~~~~~~~~~~~---~~---~ 671 (793)
.+..+..+..-.|++++|..+.....+..-.-+...+.... ..+...|+. ++....+....... .+ +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 77888888888999999999887776542223433332222 234556633 23333333333210 11 1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHH
Q 003829 672 DIISYNTVIFAYCRN-GRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGC----KPNQN 744 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~ 744 (793)
-..++..+++++.+. +.-.++...+..-......|-. ..+..|+.++...|+.++|...+.++..... .++..
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 234555566666552 2333444444444333333322 2234788889999999999999998875322 22333
Q ss_pred HHHHHHHH--HHccCCHHHHHHHHHHH
Q 003829 745 TYNSIVDG--YCKLNQRYEAITFVNNL 769 (793)
Q Consensus 745 ~~~~l~~~--~~~~g~~~~A~~~~~~~ 769 (793)
....++.. ....|+..+|..+..+-
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 33333333 33678999998888773
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.5 Score=37.79 Aligned_cols=124 Identities=10% Similarity=0.189 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003829 213 SLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG 292 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 292 (793)
.++..+...+.......+++.+...+. .+....+.++..|++.+ ..+..++++. ..+.+....++..|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~--~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD--PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC--HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 455555555666666666666665542 35556666666666543 3444444432 12333344455556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 293 SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC-RRPKEAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 293 ~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
+.++++..++.++.. |...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666654422 11122222223 5666666666541 14455655555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.3 Score=40.83 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSGFE 395 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~ 395 (793)
..|+..+..+++.+|+.+|++..|+++++...+. +++.+..++..|++.+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455555555555555555555555555554433 34444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.4 Score=39.64 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455566666666666655542 2223344445556666666666666665544
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=6.3 Score=42.69 Aligned_cols=165 Identities=9% Similarity=0.030 Sum_probs=96.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTT----YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 687 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 687 (793)
++..-|+-++|..+.++|.... |+.. .-.+..+|+-.|+..-..+++.-.... ...|+.-+..+.-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 4455677778888888887643 3222 234556777788777666666655543 3445666666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHccC----
Q 003829 688 RMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-Q---NTYNSIVDGYCKLN---- 757 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g---- 757 (793)
+.+....+.+-+.++ ..|-. .+--+|+-+|.-.|. .+|+.+++-|.. .|. . ...-.++-..+++.
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~ 660 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLC 660 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccC
Confidence 888888888777764 33332 334455556666665 679999999875 222 1 11222222333332
Q ss_pred -CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 758 -QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 758 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
++...++.+.+.+...-++.-..+..++
T Consensus 661 pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 661 PKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred chHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3555566666665544444444455433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.73 Score=38.57 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-SGLVPDVITYNTFVA 716 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 716 (793)
+.|+..+..+++.+|+.+|++..|.++++...+ .++..+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555555555555555544 233334444544444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.94 E-value=7.2 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 003829 352 YNSLISAYARDG--LLEEAMELKTQMVE 377 (793)
Q Consensus 352 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 377 (793)
...+|..|++.+ .+++|++...+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 334556666665 55666655555553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.7 Score=42.07 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH--HHHcCCC
Q 003829 218 YASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA-GVKPDSYTFNTLIS--CCRRGSL 294 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~--~~~~~~~ 294 (793)
+...|++.+|...++++++. .+.|..+++..=.+|..+| +...-...++++.-. +....-..|..-+. ++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc-chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 44567778888888888765 4557777777777777777 556666666665443 21111223333222 2335666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 295 HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 295 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
+++|++.-++..+.+ +.|...-.++.+++--.|++.++.+...+-
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 777776666666554 235555566666666666666666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.25 Score=46.23 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 003829 207 DVYAYTSLITTYAS-----NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYT 281 (793)
Q Consensus 207 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~ 281 (793)
|..+|...+..+.. .+..+--...+..|.+.|+..|..+|+.|++.+-+... -|. ..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-----------------iP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-----------------IPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------------ccH-HH
Confidence 34444444444432 34456566677888888999999999999988876441 111 11
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 282 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
|..+.--|- .+.+-+..++++|...|+-||..+-..|+++|++.+-.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 112221122 22344677788888888888888777788877776643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.7 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 349 IVTYNSLISAYARDGLLEEAMELKTQ 374 (793)
Q Consensus 349 ~~~~~~li~~~~~~g~~~~A~~~~~~ 374 (793)
...|..|.....+.|+++-|.+.|.+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.97 Score=47.43 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=77.9
Q ss_pred hccCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 500 SRCGSFDQAMSIYK--RMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 500 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
.-.|+++.+.++.+ ++.. ..+....+.++..+.+.|..+.|+.+..+-.. -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 34566666555553 1111 11244466667777777777777766533221 1233446677777
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
|.++.+ ...+...|..|.+...++|+++-|.+.|.+..+ +..|+-.|.-.|+.++-
T Consensus 337 A~~~a~---------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 337 ALEIAK---------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHCC---------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHHHHH---------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 665432 123556677777777777777777777766542 33455556666776666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 697 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 697 (793)
.++.+.....| -++....++...|+.++..+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666655543 23344444555566666665553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.11 Score=49.87 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=48.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
-|.+.|.+++|..+|...+. ..| +.+++..-+.+|.+..++..|..-.+.++..+ .--...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 35556666666666655555 334 45555555555666655555555555544321 001233444444444555566
Q ss_pred HHHHHHHHHhhCCCCCC
Q 003829 761 EAITFVNNLSKLDPHVT 777 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~~ 777 (793)
||.+=++.++++.|++.
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 66666666666666543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.6 Score=36.65 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=59.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHcCCCH
Q 003829 220 SNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI---SCCRRGSLH 295 (793)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~ 295 (793)
..++.++|+..|..+.+.|..--.+ ....+.......| +...|+..|+++-.....|...-=..-+ -.+...|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg-dta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG-DTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc-cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455556666666655554332221 2222223333444 5555555555555444333322111111 123455666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN 343 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 343 (793)
+......+.+...+-+.....-.+|.-+-.|.|++.+|.+.|+.+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666555555554443333344455555556677777777777666543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.027 Score=34.89 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|..|+..|.+.|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4 Score=37.03 Aligned_cols=29 Identities=34% Similarity=0.197 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 350 VTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 350 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.||--+.+.+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35666666666666666666666666654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.3 Score=37.35 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
-...+++.+|.++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34557788888888888775554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.12 E-value=6.5 Score=38.74 Aligned_cols=19 Identities=5% Similarity=-0.190 Sum_probs=12.0
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 003829 463 VFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~ 481 (793)
.+.+.+++++|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776433
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.6 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 385 FTYTTLLSGFEKAGKDESAMKVFEEMRSAG 414 (793)
Q Consensus 385 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 414 (793)
.||.-+.+.+...|++++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 467778888888888888888888877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.26 Score=32.20 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 750 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 750 (793)
++..++..|...|++++|+++++++++. .| |...|..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 4556666666666666666666666663 33 345544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.089 Score=31.99 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+|..++..|...|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777888888888888888888877763
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.57 E-value=3.5 Score=35.75 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPDIISY-NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA-ADSLF 724 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~ 724 (793)
.-.+.++.+++..+++.+.-. .|..... ..-...+...|+|.+|..+|+++.+.. |....-..|...|. ..|+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D- 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD- 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC-
Confidence 345677888888888888774 5553322 223455677888888888888877643 22222233333333 3333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
..=..+.+++++.+- |..+- .|+..+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~--d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGA--DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCC--ChHHH-HHHHHHHHhccccchhh
Confidence 233344455555433 33322 34444555555545544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.67 Score=43.48 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
+.++-....++.|.+.|+.-|..+|+.|++.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 344444555566666666666666666665543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.2 Score=40.13 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCH----H
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV--ITYNTFVASYAADSLFVEALDVVRYMIK---QGCKPNQ----N 744 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~ 744 (793)
..+..++.-|++.|+.++|.+.|.++.+....+.. ..+..+++.....|++..+...+.++.. .|-..+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45666777777777777777777777775444333 4556677777777777777777666653 2211111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.|..| .+...|++.+|.+.|-+.....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCcCC
Confidence 12222 2445678888887777766544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.13 Score=54.82 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCC
Q 003829 12 PTPPPAKPLFLT 23 (793)
Q Consensus 12 ~~p~~~~~~~~~ 23 (793)
|.|||++|++..
T Consensus 280 s~ppppap~p~~ 291 (830)
T KOG1923|consen 280 SGPPPPAPLPHT 291 (830)
T ss_pred CCCCCCCCCCCc
Confidence 333433344433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.08 Score=32.23 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=18.2
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 003829 731 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 731 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
|+++++. .| +...|..++..|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3455552 34 3666666666666666666664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=7.5 Score=36.89 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEI-GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIK-M 428 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 428 (793)
.+......+...+++..+...+...... ........+......+...+++..+...+.......... ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3444444444455555555444444431 112233333344444444444555555555544432221 111111111 4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 003829 429 HGNRGNFVEMMKVFDEINKCNC--KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD 506 (793)
Q Consensus 429 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 506 (793)
+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5555555555555555533110 01122222223334455555566555555554321112344555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
.+...+......... ....+..+...+...+..+++...+.+....
T Consensus 220 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666554222 1223333333333555566666666665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.06 E-value=18 Score=40.50 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=48.6
Q ss_pred HhCCChHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHhccCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 003829 465 GQNGMDSEVSGVFKEMKRAGF-IPE-------RDTFNTLISAYSRCGSFDQAMSIYK--------RMLEAGVTPDLSTYN 528 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 528 (793)
+-.+++..+...++.|.+... .|+ ...+....-.+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 356888889988888876421 111 2223333334446789999999997 444555554555444
Q ss_pred HHHH--HHHhcC--ChHH--HHHHHHHHhc
Q 003829 529 AVLA--ALARGG--MWEQ--SEKIFAEMKG 552 (793)
Q Consensus 529 ~l~~--~~~~~g--~~~~--A~~~~~~~~~ 552 (793)
.+=. .+...+ ..++ +..+++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 3221 222222 2223 6666666543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.23 Score=30.72 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMI 735 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 735 (793)
+|..|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888889999999999888855
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.81 E-value=4.9 Score=33.30 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHH
Q 003829 291 RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT---YNSLISAYARDGLLEE 367 (793)
Q Consensus 291 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 367 (793)
-.|..++..++..+.... .+..-||-+|.-....-+-+...++++.+-+- .|... ...++.+|++.|...+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---H
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcchHH
Confidence 357777777777777664 24555555555444444555555555555221 22221 2334445544443322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 368 AMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 368 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
.....+..+...|+-|.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 88 ------------------~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ------------------YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2333455666677777777777776642 255666677777777777777777777777666
Q ss_pred CC
Q 003829 448 CN 449 (793)
Q Consensus 448 ~~ 449 (793)
.|
T Consensus 149 kG 150 (161)
T PF09205_consen 149 KG 150 (161)
T ss_dssp TT
T ss_pred hc
Confidence 55
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.7 Score=36.07 Aligned_cols=74 Identities=11% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 705 VPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+...+--.+.+++.++.+ ..+.+.++++..+.. .|+ .+....|+-++++.|++++++.+++.+++..|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4455667778888887766 455688888887632 333 3444566778889999999999999999999888765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.9 Score=43.70 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS-----AGVKPDSYTF 282 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~-----~~~~p~~~~~ 282 (793)
..++..++..+...|+++.+...++++.+.. +-+...|..++.+|.+.| +...|+..|+++.+ .|+.|-..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g-~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNG-RQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456666666666666666666666666653 235566666666666666 66666666666544 4666666665
Q ss_pred HHHHHH
Q 003829 283 NTLISC 288 (793)
Q Consensus 283 ~~l~~~ 288 (793)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.17 Score=30.35 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+-.++.++.+.|++++|++.++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345666777777777777777777777765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.56 E-value=14 Score=37.99 Aligned_cols=65 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP---SLTTYNTLMYMYSRSENFARAEDVLREILA 666 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 666 (793)
...++..++..+.+.|.++.|...+..+.+.+... .+.+.-.-+...-..|+..+|+..+++.+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777888888888888888888877643111 233333445566677888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.54 E-value=6.9 Score=35.10 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=70.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
+...+..+|++++|+..++..+...-.-+ ..+-..|.......|.+++|++.++...+.+.. ......-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 44557889999999999998885411111 122334567788899999999999998875543 34567778899999
Q ss_pred CChHHHHHHHHHHHHcC
Q 003829 722 SLFVEALDVVRYMIKQG 738 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~ 738 (793)
|+-++|..-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999864
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=11 Score=36.14 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=25.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
..|.++|.+.+|.++.+..+.- .+.+...|..++..+...|+--.|.+-++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4444555555555555554443 2234444445555555555544444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.11 E-value=7.5 Score=33.82 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=41.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM 256 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 256 (793)
+..-.+.++.+.+..++..+.-..+. ....-..-+..+.+.|++.+|+.+|+++.+.. |.......|+..|...
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 33444566777777777766554333 22333334455667777777777777776542 3333344444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.96 E-value=14 Score=36.59 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCH---
Q 003829 333 AMQVLREMKINGCLPSIVTYNSLISAYAR--D----GLLEEAMELKTQMVEIGI---TPDVFTYTTLLSGFEKAGKD--- 400 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~--- 400 (793)
...+++.|.+.|...+..+|.+....... . -...+|.++++.|++... .++...+..++.. ..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34555556666655555444332221111 1 124456666666665531 2233444444322 22222
Q ss_pred -HHHHHHHHHHHHCCCC
Q 003829 401 -ESAMKVFEEMRSAGCK 416 (793)
Q Consensus 401 -~~a~~~~~~~~~~~~~ 416 (793)
+.++.+|+.+.+.|+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 3344555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.87 E-value=4.7 Score=34.34 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=32.3
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 649 SRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...++.+++..+++.|.-. .|+.. .-..-...+...|+|++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777777777777763 44422 22222344566777777777777777644
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.84 E-value=4.9 Score=36.22 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDV--FTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
.+..+...|++.|+.++|++.+.++.+....+.. ..+..+|......|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554322221 233444555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.42 Score=28.94 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
|..++.+|...|++++|...|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.83 E-value=14 Score=36.49 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHH
Q 003829 365 LEEAMELKTQMVEIGITPDVFTYTTLLSGFEK--A----GKDESAMKVFEEMRSAGC---KPNICTFNALIK 427 (793)
Q Consensus 365 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 427 (793)
+++.+.+++.|++.|+.-+..+|.+....... . .....+..+++.|++... .++...+..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 44556677788888877776555543322222 1 234567778888877642 233444444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.21 Score=30.34 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 696 FSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 696 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
|+++++ ..| +...|+.++..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555 334 4466677777777777766664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=24 Score=38.87 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFD-IDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
++-+.+.+.+++|+++.+.....-.. .....+...|..+...|++++|-...-+|... +...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~- 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD- 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc-
Confidence 44556778888888877765433111 13457788888888889999998888888753 5666666666666555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR 291 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 291 (793)
.... ++.-+.......+...|..++..|..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 2221 11112222222455677777777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.66 E-value=31 Score=40.06 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 003829 391 LSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMD 470 (793)
Q Consensus 391 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 470 (793)
++..-+.|.+.+|..++..-.+. -...|.+..+.+...+.+++|.-.|+..-+ ....+.+|...|++
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 33334455555555544321111 122344444444455556666555554321 12334556667777
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003829 471 SEVSGVFKEMKRAGFIPERD--TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFA 548 (793)
Q Consensus 471 ~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 548 (793)
.+|..+..++... -+.. +-..|+..+...+++-+|-++..+.... ....+..|++...|++|.++..
T Consensus 982 r~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 982 REALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence 7777776665432 1111 2255666677777777777777666542 1223444566667777777665
Q ss_pred HHh
Q 003829 549 EMK 551 (793)
Q Consensus 549 ~~~ 551 (793)
...
T Consensus 1051 ~~~ 1053 (1265)
T KOG1920|consen 1051 KAK 1053 (1265)
T ss_pred hcc
Confidence 543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.64 E-value=25 Score=38.80 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITP---DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (793)
|+.+.+.+.+++|+++.+..... .+ -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55566677777777665544332 22 1233455566666667777666666666543 444444444444444
Q ss_pred CCH
Q 003829 433 GNF 435 (793)
Q Consensus 433 g~~ 435 (793)
++.
T Consensus 437 ~~l 439 (846)
T KOG2066|consen 437 DQL 439 (846)
T ss_pred ccc
Confidence 433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.4 Score=40.87 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTYNSI 749 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 749 (793)
++..++..+...|+++.+.+.++++.+.... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4455556666666666666666666663222 455666666666666666666666666543 4555555554444
Q ss_pred HHH
Q 003829 750 VDG 752 (793)
Q Consensus 750 ~~~ 752 (793)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.6 Score=38.46 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYCRN---G-------RMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADS 722 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 722 (793)
++.|++.++.....+ +.|...++....++... . .+++|..-|++++. +.|+. .++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 567777777755543 44566655555555433 2 24455555666666 77765 78888888888665
Q ss_pred C-----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 723 L-----------FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 723 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
. +++|.+.|+++.+ .+|+..+|+.-+... ++|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 3 4555666666665 478888887665543 35666666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.45 E-value=28 Score=39.11 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 003829 181 SMLGKEGKVSVAASLLHGL 199 (793)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~ 199 (793)
+-..+.|+++.|..++++.
T Consensus 368 ~hAlaA~d~~~aa~lle~~ 386 (894)
T COG2909 368 DHALAAGDPEMAADLLEQL 386 (894)
T ss_pred HHHHhCCCHHHHHHHHHhh
Confidence 3344566666666666644
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.06 E-value=3.6 Score=36.76 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAA 720 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 720 (793)
-+.+.|++++|..-|.+++.. +++. ...|..-..++.+.+.++.|.+-..+.++ +.|.. ..+..-+.+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 345667777777777777765 2332 23444455666777778888877777777 44432 444445567777
Q ss_pred cCChHHHHHHHHHHHHc
Q 003829 721 DSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~ 737 (793)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77788888888887763
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.87 E-value=8.4 Score=31.99 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 003829 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (793)
Q Consensus 457 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 520 (793)
.+..+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455556666666666666666542 234666666666677777777777776666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.61 Score=28.11 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..++.++...|++++|++.+++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.48 E-value=9.3 Score=39.30 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=77.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHC---CC--CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH--
Q 003829 646 YMYSRSENFARAEDVLREILAK---GI--KPD---IISYNTVIFAYCRNGRMKEASRIFSEMRD-------SGLVPDV-- 708 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~---~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 708 (793)
..+...|++.+|.+++...--. |. .|. -..||.|+-...+.|.+.-+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3456688999998887654321 21 111 22357777777778888888888887774 4655522
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003829 709 --------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756 (793)
Q Consensus 709 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 756 (793)
......+-.|...|+.-.|.+.|.+..+. +.-++..|..|+.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 23345566788999999999999999875 677899999999988744
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.6 Score=37.18 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCC-------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMY---SRSEN-------FARAEDVLREILAKGIKPD-IISYNTVIFAYCRNG 687 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~-------~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 687 (793)
++.|.+..+.....+ |.|...++.-..++ .+..+ +++|+.-|++.+. +.|+ ..++..++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 677777777765554 66777655444443 33333 3444555555555 4666 478888888886554
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003829 688 R-----------MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK 740 (793)
Q Consensus 688 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 740 (793)
. +++|...|+++.+ ..|+...|+.-+... .+|-++..++.+.+..
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 2 5666777777777 788989998877665 3577777777665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.42 Score=31.00 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhC
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
|+.+|...|+.+.|+++++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.09 E-value=13 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 003829 318 NALLDVYGKCRRPKEAMQVLRE 339 (793)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~ 339 (793)
..++..+...|++-+|+++.+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3444445555555555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.05 E-value=13 Score=32.85 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 336 VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC 415 (793)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 415 (793)
+++.+.+.+++++...+..++..+.+.|++... ..++..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 344444455555555666666666666654432 33333444444433332222111 1222222222222221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 416 KPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (793)
Q Consensus 416 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (793)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012344455555566666666655543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.5 Score=31.24 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+..+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +.+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45666677777778888888888888888888888888888887754 3333336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.4 Score=32.73 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
=++.+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +..+..+|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 345566666666677777777777777777777777777777766533 2223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.55 E-value=3 Score=38.41 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=72.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCh
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPDIIS-YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLF 724 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 724 (793)
.|.....+..|+..|.+.+.. .|+..+ |..-+.++.+..+++.+..--.+.++ +.|+. .....++.++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 355556677888877777763 566543 44556677777788888777777777 66655 4445666667777778
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 725 VEALDVVRYMIK----QGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 725 ~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
++|+..+.++.. ..+.+-..++..|..+=.+.=...++..+.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888888877732 2333345566666555333333444444433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.45 E-value=1 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
-.++-++.+.|++++|..+++.+++..|++...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 355667888899999999999999998887654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=42 Score=37.57 Aligned_cols=137 Identities=7% Similarity=-0.045 Sum_probs=67.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 003829 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 473 (793)
..+.|++..+.++...+....+ .....|..+... ......++....+++-.. .+.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHH
Confidence 4466777777777666643211 112222222221 122245554444443211 011122222334445556666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMW 540 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 540 (793)
...+. ..+.+...-..+..+....|+.++|......+-..|.. ....+..++..+.+.|..
T Consensus 119 ~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 119 LAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 55221 12334455556666777777777776666666555443 455666666666655543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.07 E-value=5.3 Score=36.16 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
.+.|+ ++|++.|-++...+.--++.....|+.-| ...+.++|+.++.++++. +-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 67777777777665544555555555444 466778888888887753 22456778888888888888888
Q ss_pred HHHH
Q 003829 761 EAIT 764 (793)
Q Consensus 761 ~A~~ 764 (793)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 7753
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.71 E-value=80 Score=40.13 Aligned_cols=323 Identities=8% Similarity=0.036 Sum_probs=150.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 390 LLSGFEKAGKDESAMKVFEEM----RSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFG 465 (793)
Q Consensus 390 li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (793)
+..+-.+.+.+..|...++.- ++. ......|..+...|...++.|...-+...... +.. ...-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHH
Confidence 344445667777777777763 211 11223344444578888887777666653111 111 222344456
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHH
Q 003829 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTY-NAVLAALARGGMWEQSE 544 (793)
Q Consensus 466 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~ 544 (793)
..|++..|..-|+.+.+.+.. ...++.-++......|.++...-..+......-. ....+ +.=+.+-.+.++|+...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhh
Confidence 678888888888888876432 3556666666666667777666655554443211 22222 22234446777777776
Q ss_pred HHHHHHhcCCCCCCHhhHHHH--HHHHHcCCCHHH--HHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 003829 545 KIFAEMKGGRCKPNELTYSSL--LHAYANGREIDQ--MLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMV 619 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 619 (793)
.... +. +..+|... .....+..+-|. -.+..+.+.+ .........+...+ ...|..++....-.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~-~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~--- 1607 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE-LVIENLSACSIEGSYVRSYEILMKLHLLL--- 1607 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHH-HhhhhHHHhhccchHHHHHHHHHHHHHHH---
Confidence 6654 11 12222222 222221111111 1111111110 00111111111111 12334443332211
Q ss_pred HHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCC-----HHHHHHHHHHHHHcCCH
Q 003829 620 AKTNEILHFMNDS----GFTPSLTTYNTLMYMYSRSENFARAEDVLREIL-AKGIKPD-----IISYNTVIFAYCRNGRM 689 (793)
Q Consensus 620 ~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-----~~~~~~l~~~~~~~g~~ 689 (793)
+-....+...+. ....+...|..-+..-....+..+-+--+++.. .....++ ...|........+.|++
T Consensus 1608 -el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 -ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred -HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111111 001111112111111111111111111111111 1111111 45777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+.|...+-++.+.+ . +..+.-.+..+-..|+-..|+.++++-++.
T Consensus 1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88888888877754 2 345666677777888888888888888764
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.69 E-value=34 Score=35.79 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 357 (793)
|.....+++..+.......-.+.+-.+|...| -+...|..++.+|... ..++-..+++++.+... .|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444455555555555555555555555543 2344455555555554 34444555555444311 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 003829 358 AYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.|- .++.+.+...|.+...+
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHH
Confidence 332 25555555555555443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.68 E-value=27 Score=34.71 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=110.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN----- 686 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 686 (793)
..+..+|.++|....+.| .......|...|.. ..+..+|...++++.+.|..+...+...+...|..-
T Consensus 90 ~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 346888999999887766 33344446666554 458999999999999987544323344555544432
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---
Q 003829 687 G--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN--- 757 (793)
Q Consensus 687 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--- 757 (793)
- +...|..++.++.+.+ +......++..|.. ..+.++|...|++..+.|. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~ 239 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGV 239 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCc
Confidence 1 3347999999999876 45556666666643 3478999999999998774 33344444 556555
Q ss_pred ------------CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 758 ------------QRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 758 ------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
+...|..++..+...++.........+-
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 279 (292)
T COG0790 240 KKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALK 279 (292)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 8889999999999998887766666433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=32 Score=35.48 Aligned_cols=124 Identities=15% Similarity=0.026 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003829 322 DVYGKCRRPKEAMQVLREMKIN-GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD 400 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 400 (793)
.--...||+..|-+-+...+.. ...|+.+... ...+...|+++.+.+.+...... +.....+...++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3334567776665444444333 3334443333 33455678888888887766543 333456677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003829 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN 449 (793)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 449 (793)
++|...-+.|+...+. +..+........-..|-++++.-.|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888888766544 44444333333445567888888888876654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.88 Score=29.05 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+++.|+..|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=3.7 Score=41.83 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=84.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
|.--...|++..|-+-+...... .+.++.........+...|+++.+.+.+....+. +.....+...++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567777765544444432 1333333333444566789999998888776654 344556777888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
++|...-..|+...++ +..+....+......|-++++...+++....+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888876666 55555555555566788899999999887643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.51 E-value=22 Score=33.52 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=52.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDS-----GLVPD-------VITYNTFVASYAADSLFVEALDVVRYMIK-QGCKPNQN 744 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 744 (793)
.+...|...|.+..-.++++++..+ |-. | ..+|..=|..|....+-.+-..+|++.+. +.--|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed-D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED-DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCch-hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4555556666666666666665532 110 1 14556666667666666666666776653 12234444
Q ss_pred HHHHHHHH----HHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDG----YCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+...+-.+ ..+.|++++|-.=|-++.+..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 44333322 446677777776666666653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=38 Score=35.45 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 456 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
...+++..+.++....-+..+..+|..-| .+...+..++..|... ..+.-..+|+++.+..+. |...-..|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 33444444444444555555555555432 2344455555555544 334444555555554443 3333333333333
Q ss_pred hcCChHHHHHHHHHHhcCCCCC-----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 536 RGGMWEQSEKIFAEMKGGRCKP-----NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMI 610 (793)
Q Consensus 536 ~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 610 (793)
+ ++...+..+|.++...-++- -...|..+.... ..+.+....+..++. ...|..--...+..+-
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiq--------t~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQ--------TKLGEGRGSVLMQDVY 212 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHH--------HhhccchHHHHHHHHH
Confidence 3 44445555554444321110 001122222110 122233332222211 1222222333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 611 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
.-|....++++|++++..+.+.+ ..|...-..++..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 55666666777777776666554 3344444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.88 E-value=48 Score=36.57 Aligned_cols=45 Identities=27% Similarity=0.175 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIVTYNSLISA-----YARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 377 (793)
..+|.++++...+.|. ......+..+ +....+.+.|+..|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4566666666655542 2222222222 3344566666666666655
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=38 Score=35.39 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=50.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC--RNGRMKEASRIFSEMRD-SGLVPDVITYNTFVASY 718 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 718 (793)
+.+++.+.+.|-..+|..++..+... .+++...|..++..-. ..-+...++++|+.|.. .| .|+..|-.....-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 34455555555666666666666554 3444555555543211 11125666677776665 34 3555555555555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 003829 719 AADSLFVEALDVVRYMIK 736 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~ 736 (793)
...|..+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566776666666666554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.85 E-value=52 Score=36.98 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
..++++.+.+.+.. + -.-.++|..+.+.|..+-|+...+.-.. - ...+...|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns-------~-LvGqaiIaYLqKkgypeiAL~FVkD~~t---------R---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNS-------N-LVGQAIIAYLQKKGYPEIALHFVKDERT---------R---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhc-------C-cccHHHHHHHHhcCCcceeeeeecCcch---------h---eeeehhcCCHHHHHHH
Confidence 34566666555432 1 1223456666677777777665443221 1 2335567888888876
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 003829 407 FEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFI 486 (793)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 486 (793)
-..+- |..+|..|......+|+.+-|+..|++.. .|+.|--.|.-.|+.++-.++.+....++
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~-- 728 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRN-- 728 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhh--
Confidence 55542 67889999999999999999998888754 34555556777888888777766554432
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 003829 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKG 552 (793)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 552 (793)
|..+ .+.. ..-.|+.++-.++++..-. . + -.|. . -...|.-++|.++.++.-.
T Consensus 729 -D~~~--~~qn-alYl~dv~ervkIl~n~g~---~-~-layl---t-a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 -DATG--QFQN-ALYLGDVKERVKILENGGQ---L-P-LAYL---T-AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhHH--HHHH-HHHhccHHHHHHHHHhcCc---c-c-HHHH---H-HhhcCcHHHHHHHHHhhcc
Confidence 2221 1111 1224777776666654332 2 1 1121 1 2346777888888888765
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.89 Score=26.51 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.|..++..+...|++++|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666667777777777777777666553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.6 Score=39.59 Aligned_cols=103 Identities=16% Similarity=0.257 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 598 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII 674 (793)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 674 (793)
|......+...++..-....+++.+...+-++.... ..++... .+.+..+.+ -+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444444455555555566778888888887776531 1111111 122333333 36789999999889999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888777754
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.54 E-value=12 Score=34.93 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCh-------HHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 709 ITYNTFVASYAADSLF-------VEALDVVRYMIKQGCKP----N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
..+..+++.|...|+. ..|.+.|++..+..-.| + ..+.-.++....+.|++++|..++.+++...-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4556666677766663 34555555555432111 1 3344456667778888888888888888775444
Q ss_pred C
Q 003829 777 T 777 (793)
Q Consensus 777 ~ 777 (793)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 4
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=31 Score=33.94 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
+..+-...+.++++.++ .++...+-.+.+ .++...-...+.++.+.+ ....+...+..+.. .++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444444 334444444433 223333333344444332 12344444444442 23445555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 56666665 34555554444432 1 223455666666663 566666666643 33554444444433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.7 Score=41.94 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 351 TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHG 430 (793)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (793)
..+.++..+-+.|..++|+++ .+|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 344555666666666666654 222211 1233456677777776655542 4455777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 003829 431 NRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (793)
Q Consensus 431 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 510 (793)
+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. +...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 77777777777765432 334555555555555444444444444321 122223444566666665
Q ss_pred HHHH
Q 003829 511 IYKR 514 (793)
Q Consensus 511 ~~~~ 514 (793)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 5543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.03 E-value=30 Score=33.32 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNTY 746 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 746 (793)
++.....|..+|.+.+|.++.++.+. +.| +...+-.|+..|...|+--.|.+.++++.+ .|+..|..++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667777777777777777776 333 445666777777777776667666666642 4555544433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.91 E-value=5 Score=38.61 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=66.1
Q ss_pred cHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003829 135 DLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSL 214 (793)
Q Consensus 135 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (793)
++-..+........++.+...+..++. +.+.-. ....+.+..++.|.+. +.++++.++..=++.|+.||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRh--s~~a~~-~~~~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRH--SPNAWY-LRNWTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhc--Ccchhh-hccccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHH
Confidence 333344444445677888888888766 221111 1222344555665554 455888888888888888898999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 003829 215 ITTYASNGRYREAVMVFKKMEEE 237 (793)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~~~~~ 237 (793)
++.+.+.+++.+|..+...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999988888887777654
|
|
| >COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.53 Score=52.57 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhCCCCCCHH
Q 003829 760 YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~~~~ 779 (793)
+|-.+++++.+..+|++...
T Consensus 1132 ~E~~~L~~~yl~Enpdp~~~ 1151 (2365)
T COG5178 1132 KEEDSLLEDYLRENPDPEEA 1151 (2365)
T ss_pred chhHHHHHHHHhcCCCchhh
Confidence 34455566666666555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.69 E-value=59 Score=36.37 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC 327 (793)
Q Consensus 284 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 327 (793)
.+|--|.|.|++++|.++..+.... +......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4455677899999999988555543 344455666777777664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1e+02 Score=39.21 Aligned_cols=319 Identities=13% Similarity=0.097 Sum_probs=160.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 213 SLITTYASNGRYREAVMVFKK----MEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC 288 (793)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~----~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 288 (793)
.+..+=.+++.+.+|+..++. ..+. ......|-.+...|...+ +.+....+...... +...+ .-|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a-----~~sl~-~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIH-DPDGVEGVSARRFA-----DPSLY-QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhc-----CccHH-HHHHH
Confidence 444555678888888888888 3222 112334455555788877 77776666553111 11122 22334
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHHhcCCHHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL-ISAYARDGLLEE 367 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 367 (793)
....|++..|...|+++.+.+ ++...+++.++......|.++.+....+..... ..+....|+.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 556688888899998888774 223667777776666777777777766655443 22233334333 333456677776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHH--HHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHhcCC
Q 003829 368 AMELKTQMVEIGITPDVFTYTT--LLSGFEKAGKDE--SAMKVFEEMRSA--------GCKP-NICTFNALIKMHGNRGN 434 (793)
Q Consensus 368 A~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~--~a~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~ 434 (793)
....+. . . +..+|.. +...+.+..+-| .-.+.++.+.+. +..- =...|..++..+.-..-
T Consensus 1537 ~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 665544 1 1 1111211 222222211111 111122222211 1111 11334444444332211
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-HHHc----CCC-CCHHHHHHHHHHHhccCCHHH
Q 003829 435 FVEMMKVFDEIN-KCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKE-MKRA----GFI-PERDTFNTLISAYSRCGSFDQ 507 (793)
Q Consensus 435 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~ 507 (793)
+...+.+.... .....-+...|..-+..-....+..+-+--+++ +... +.. --..+|....+...+.|.++.
T Consensus 1610 -~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1610 -ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred -HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11111111111 001111222232222211111112221111111 2211 111 123477888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 003829 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGG 553 (793)
Q Consensus 508 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 553 (793)
|...+-.+.+.+ -...+......+...|+...|..++++..+.
T Consensus 1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 998887777765 3455666777888999999999999998754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.51 E-value=4 Score=39.67 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
++-|.++|.+++|+..|....... +-|.+++..-..+|.+...+..|+.--...+..+ +.-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 455666666666666666655542 2355666555566666666665555544444321 00012233333333333455
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 003829 690 KEASRIFSEMRDSGLVPD 707 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~ 707 (793)
.+|.+-++..++ ++|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 555555555555 4444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.46 E-value=0.023 Score=49.59 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445556667777777777776554556677777777777776666666666511 11222344555555566
Q ss_pred HHHHHHHHHH
Q 003829 689 MKEASRIFSE 698 (793)
Q Consensus 689 ~~~A~~~~~~ 698 (793)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6665555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=36 Score=33.46 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY----REAVMVFKKMEEEGCKPTLITYN 247 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~ 247 (793)
+..+....+..+...|.. .+...+..+... .+...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 344555555666666543 333333334332 2556666666677776652 4566667666433 34555555
Q ss_pred HHHHHHHhcCCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 248 VILNVYGKMGMP----WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323 (793)
Q Consensus 248 ~ll~~~~~~g~~----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 323 (793)
..+.++...+.. ...+.+.+..... .++..+-...+.++.+.++ +++...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 555555444310 1122333322222 2355555556666666665 3455555555543 344444444555
Q ss_pred HHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 324 YGKCR-RPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDES 402 (793)
Q Consensus 324 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 402 (793)
+.+.+ +...+...+..+.. .++...-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55442 23455555555543 2355555666666666666 45555555555443 1 123455566666663 4
Q ss_pred HHHHHHHHHHC
Q 003829 403 AMKVFEEMRSA 413 (793)
Q Consensus 403 a~~~~~~~~~~ 413 (793)
|...+..+.+.
T Consensus 253 a~p~L~~l~~~ 263 (280)
T PRK09687 253 LLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHHhh
Confidence 66666665543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.69 E-value=11 Score=39.92 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
.-+.++..+.++|-.++|+++ .+|...- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 345555666666766666554 2222221 123345677777777665543 4567778888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
..|++..|.+.|.+..+ |..|+-.+...|+-+.-..+-....+.|. .|.-..+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 88888888887777665 33444555556665544444444444432 1222334556677777666
Q ss_pred HHHHH
Q 003829 765 FVNNL 769 (793)
Q Consensus 765 ~~~~~ 769 (793)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 66543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.51 E-value=22 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=35.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003829 184 GKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEG 238 (793)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 238 (793)
...++.+++..+++.+.-..+. ....-..-+..+...|++++|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3477788888888777654333 22233334455677888888888888887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.5 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
|..+...|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
|
... |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.41 E-value=47 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 423 NALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 423 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
..|+.-|...|++.+|...++++--- .-.....+.+++.+.-+.|+-...+.++++..+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44556666666776666666654210 01123455566666666666555555555555544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.30 E-value=6.6 Score=35.75 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVD 751 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 751 (793)
.+.-+..+.+.+.+++|+...++-++.+.. |...-..++..||-.|++++|...++.+-+ +.|+ ..+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 344556677777888888877777764322 445566777788888888888777777655 3332 455666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.19 E-value=6.6 Score=30.47 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+.=++.+-++.+....+.|++.+..+-+.+|.+.+|+.-|+.+++-+..+-.. ....|..+++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHH
Confidence 34467777788888889999999999999999999999999999988855433 344777777655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.94 E-value=15 Score=29.02 Aligned_cols=78 Identities=6% Similarity=0.037 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDR 787 (793)
Q Consensus 710 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 787 (793)
.|..-...|....+ .=+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+.+++-+..+-.+... .|..+++.
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~-~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE-IYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT-HHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH-HHHHHHHH
Confidence 34444444544333 3356666777777789999999999999999999999999999998866443322 78888776
Q ss_pred H
Q 003829 788 I 788 (793)
Q Consensus 788 l 788 (793)
+
T Consensus 89 l 89 (108)
T PF02284_consen 89 L 89 (108)
T ss_dssp H
T ss_pred H
Confidence 5
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.6 Score=26.74 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMR 700 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 700 (793)
+++.+...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34445555555555555555555544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.19 E-value=12 Score=29.28 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 294 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
..++|..+-+.+...+-. ...+--.-+..+...|+|++|..+.+.+ +.||...|.+|... +.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 457777777777765421 1111112244567788888888888776 67888888776543 6677777777777
Q ss_pred HHHHcC
Q 003829 374 QMVEIG 379 (793)
Q Consensus 374 ~m~~~g 379 (793)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 777766
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.6 Score=44.12 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=57.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
...|+...|.+.+..+......-..+....|+..+.+.|...+|-.++.+.+... ...+-++..++.++....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3446667777777666652211122445566666666666667777776666543 223455566666777777777777
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
+.++.+.++.|++...
T Consensus 697 ~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHhcCCCChhh
Confidence 7777777777765554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.44 E-value=54 Score=33.14 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR---NGRMKEASRI 695 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 695 (793)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|..++..... .-.+++...+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 455677888888875 5778888888999999999999999999999862 3367788888776544 2357777777
Q ss_pred HHHHHHC------CC------CCC--H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003829 696 FSEMRDS------GL------VPD--V---ITYNTFVASYAADSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 696 ~~~~~~~------~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 739 (793)
|.++++. +. .++ . .++..+...+.++|..+.|+.+++-+++.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 7777641 21 011 1 2344555566688999999999999998765
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.29 E-value=11 Score=34.27 Aligned_cols=71 Identities=23% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHH
Q 003829 297 EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN---GCLPSIVTYNSLISAYARDGLLEEA 368 (793)
Q Consensus 297 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 368 (793)
.|.+.|-.+...+.--+......|...|. ..|.+++..++-...+. +..+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444333223333333333332 33444444444444332 1133444444555555555544444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.05 E-value=40 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=9.8
Q ss_pred CCChHHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFR 160 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~ 160 (793)
.+++++|.++|....
T Consensus 27 ~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA 41 (288)
T ss_pred CcchHHHHHHHHHHH
Confidence 346777777776654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.09 E-value=29 Score=32.37 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=77.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTT-YNTLMYMYSRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRM 689 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 689 (793)
.|.....++.|...|.+.+.. .|++.+ |..=+.++.+..+++.+..--.+.++ +.||.+ ....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 366677899999988887765 577655 45556677888899998888777777 466644 455666777888899
Q ss_pred HHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 690 KEASRIFSEMRD----SGLVPDVITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 690 ~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
++|...++++.. +.+.+-......|..+-...=...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999854 23333334445554433322233344444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=15 Score=35.64 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL-ECKLSDRI 788 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l 788 (793)
.+.+-.+|.+.++++.|+...+.++. +.|+ +.-+.--+-.|.+.|.+..|..=++..++..|+++... ....+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35566677777888888888888776 3454 55566666677788888888887888777777765543 33444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.52 E-value=12 Score=34.16 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFV 715 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 715 (793)
+.+..++.+.+.+.+++|+...++=++.+ +-|...-..++..||-.|+|++|..-++-+-+ +.|+ ...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34556777888999999999999888763 33566777888999999999999999998887 4443 35566655
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHH-HHHHH-HHccCCHHH-HHHHHHHHhhCCCCC
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPN-----QNTYN-SIVDG-YCKLNQRYE-AITFVNNLSKLDPHV 776 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~-~l~~~-~~~~g~~~~-A~~~~~~~~~~~~~~ 776 (793)
.+- .+-++..+-+..|. ...|. .|..+ -++.+..-+ +..+-+.+++..|.+
T Consensus 80 r~e----------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 80 RCE----------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHH----------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 432 22233333333332 23343 23333 234443444 455556677777765
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.47 E-value=2 Score=43.99 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNT-VIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFV 725 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 725 (793)
+...++++.|..++.++++. .||...|.. -..++.+.+++..|+.=+.++++ ..|+. ..|..-+.++.+.+++.
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHH
Confidence 34445566666666666653 444333322 22455555666666655555555 23322 34444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 726 EALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+|+..|+.... +.|+..-....+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 55555555544 4454333333333
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=81.39 E-value=23 Score=34.69 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 654 FARAEDVLREILAKGIKPDIISYNTVIFAYC------RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
++++..++++....+ .|........|.++- ..-+|.....+|+-+.. +.|++++-.+-..+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Confidence 567777777777665 366666666555442 22368888888888887 555553333333445555556777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003829 728 LDVVRYMIKQG-CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 781 (793)
Q Consensus 728 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 781 (793)
+...+-+.+.+ +.--...+..-+..+.+.|+.++|...|++++.+..++.+..+
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 88888777542 2211233345566788999999999999999999887666544
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.14 E-value=58 Score=31.98 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPDVITY-NTFVASYAADSLFVEALDVVRYMIKQGCKPNQ---- 743 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---- 743 (793)
...+.....-||+-|+.+.|.+.+.+..+ .|.+.|...+ ..++-.|....-..+-++..+.++++|..-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34566777889999999999999887765 4667676544 34444555555577788888888888876653
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.+|..+- +....++.+|..++-+.+..-
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 3333322 345578999999988877664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.12 E-value=1e+02 Score=34.08 Aligned_cols=14 Identities=0% Similarity=-0.040 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHc
Q 003829 470 DSEVSGVFKEMKRA 483 (793)
Q Consensus 470 ~~~a~~~~~~m~~~ 483 (793)
...|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 45555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 111 bits (276), Expect = 4e-25
Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 4/209 (1%)
Query: 265 ALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVY 324
L + + A P L+ + + A S + A
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 325 GKCRRPKEAMQVL---REMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381
+ A +L + L ++ YN+++ +AR G +E + + + + G+T
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 382 PDVFTYTTLLSGFEKAGKD-ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440
PD+ +Y L + +D + + E+M G K L+ + K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 441 VFDEINKCNCKPDIVTWNTLLAVFGQNGM 469
V + P V + LL
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 99.9 bits (247), Expect = 1e-21
Identities = 32/253 (12%), Positives = 82/253 (32%), Gaps = 12/253 (4%)
Query: 538 GMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE-IDQMLALSEEIYSERAFLEL-- 594
G W ++ + + + + + L + + + + + L + + S++ L
Sbjct: 24 GRW--AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLED 81
Query: 595 --KKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE 652
++ SP L ++ + + + + + ++
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141
Query: 653 NFARAEDVL---REILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVI 709
A +L K + YN V+ + R G KE + ++D+GL PD++
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 710 TYNTFVASYAADSLFVEAL-DVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNN 768
+Y + + + M ++G K ++ + +A+ V
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-ATVLKAVHKVKP 260
Query: 769 LSKLDPHVTKELE 781
L P + +
Sbjct: 261 TFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 98.4 bits (243), Expect = 3e-21
Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 3/211 (1%)
Query: 211 YTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPW--NKIMALVE 268
L+ + + + ++ +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 269 GMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCR 328
G + +N ++ R +E V +K AG +PD ++Y A L G+
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 329 RPKEAMQ-VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY 387
+ ++ L +M G + L+S R +L+ ++K P
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 388 TTLLSGFEKAGKDESAMKVFEEMRSAGCKPN 418
+ LL S K+ +++ C
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 95.3 bits (235), Expect = 4e-20
Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 6/234 (2%)
Query: 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLL 461
A + + R A P L++ + + + ++
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 462 AVFGQNGMDSEVSGV---FKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518
+ ++ + D +N ++ ++R G+F + + + + +A
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 519 GVTPDLSTYNAVLAALARGGMWEQS-EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577
G+TPDL +Y A L + R + E+ +M K L + LL +
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 631
+ + S + + A ++ +
Sbjct: 255 VHKVKPTFSLPPQ--LPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.9 bits (234), Expect = 4e-20
Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 3/160 (1%)
Query: 179 LISMLGKEGKVSVAASLLHGLH---KDGFDIDVYAYTSLITTYASNGRYREAVMVFKKME 235
++ +A LL H + + + Y +++ +A G ++E V V ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 236 EEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLH 295
+ G P L++Y L G+ I +E M G+K + L+S R ++
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQ 335
+ V L P V + LL +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 1e-15
Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 4/261 (1%)
Query: 303 EEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD 362
++++ S + L V + + A + + P L+
Sbjct: 46 AKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGK 105
Query: 363 GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS---AGCKPNI 419
L+ Q + ++ + A + +
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE-VSGVFK 478
+NA++ +G F E++ V + PD++++ L G+ D+ + +
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 479 EMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGG 538
+M + G + L+S R + P + +L +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 539 MWEQSEKIFAEMKGGRCKPNE 559
K+ +K +C +
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 1e-15
Identities = 109/734 (14%), Positives = 218/734 (29%), Gaps = 211/734 (28%)
Query: 89 HHRLSAK-GQQ------VLQSLIDD---SFDVKDIDSVLSQLLDQNPGEKSEDLGADLLG 138
HH + + G+ +L D +FD KD+ + +L E++ ++
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL------SKEEI-DHII- 55
Query: 139 IVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHG 198
+ V L L + + V +
Sbjct: 56 --------------------------MSKDAVSG---TLRLFWTLLSKQEEMVQKFVEEV 86
Query: 199 LHKD-GFDIDVYAY----TSLITT-YASNGRYRE----AVMVFKKMEEEGCKPTLITYNV 248
L + F + S++T Y R+ VF K +P L
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 249 ILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLA 308
+L + P + L++G+ +G K + + A V K+
Sbjct: 144 LLEL-----RPAKNV--LIDGVLGSG-K----------TW-----V---ALDVCLSYKVQ 177
Query: 309 GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEA 368
K+ + L++ C P+ +++L+++ + S + L +
Sbjct: 178 CKMDFKIFW---LNL-KNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 369 M--ELKTQMVEIG------ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK---- 416
+ EL+ + + +V ++ A F CK
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV--------------QNAKAWNAFN----LSCKILLT 271
Query: 417 -PNICTFNALIKMHGNRGNFVEMMKVFDE------INKC-NCKPD-----IVTWNTL-LA 462
+ L + + K +C+P ++T N L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQ-AMSIYKRMLEA-GV 520
+ + + + K D T+I + S + + Y++M + V
Sbjct: 332 IIAE--SIRDGLATWDNWKHVNC----DKLTTIIES-----SLNVLEPAEYRKMFDRLSV 380
Query: 521 TPD---LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577
P + T +L+ + W K + N+L SL+ I
Sbjct: 381 FPPSAHIPT--ILLSLI-----WFDVIKSDVMVV-----VNKLHKYSLVEKQPKESTI-- 426
Query: 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637
I S +LELK K + L+ R +V N F +D P
Sbjct: 427 ------SIPS--IYLELKVK--LENEYALH--------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 638 LTTY--NTLMY-MYS--RSENFARAEDV---LREILAKGIKPDIISYNTVIFAYCRN--G 687
L Y + + + + + E V R + K I+ D ++N N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNAS--GSILNTLQ 525
Query: 688 RMKE-ASRIF-SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNT 745
++K I ++ + LV ++ F+ + + + D++R +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILD---FLPKIEENLICSKYTDLLRIAL-------MAE 575
Query: 746 YNSIVDGYCKLNQR 759
+I + K QR
Sbjct: 576 DEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 8e-11
Identities = 102/674 (15%), Positives = 200/674 (29%), Gaps = 242/674 (35%)
Query: 42 PSASPTTISPLLQDLYNNNSSSQPIHQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQ 101
PS LYN+N + R + + +L +Q L
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---------------YLKL----RQALL 145
Query: 102 SLIDDSFDVKDIDSVLSQLLDQNPGEKSEDLGADLLGIVKGLGFHKKTDLALDV------ 155
L + +VL + G V G G KT +ALDV
Sbjct: 146 EL-------RPAKNVL------------------IDG-VLGSG---KTWVALDVCLSYKV 176
Query: 156 -----FE--W--FRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI 206
F+ W ++C S + ++ ML LL+ + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPET-----------VLEML---------QKLLYQIDPNWTSR 216
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL-NVYGKMGMPWNKIMA 265
++ + ++ R + K E C L+ +L NV N
Sbjct: 217 SDHSSNIKLRIHSIQAELR---RLLKSKPYENC---LL----VLLNV-------QNA--K 257
Query: 266 LVEGMKSAGVKPDSYTFNTLISC-----CRRGSLHEEAAG-----VFEEMKLAGFSPDKV 315
FN +SC R + + + + + +PD+V
Sbjct: 258 AWN------------AFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 316 TYNALLDVYGKCRR---PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK 372
+LL Y CR P+E + N P + S+I+ RDG
Sbjct: 304 K--SLLLKYLDCRPQDLPREV------LTTN---PRRL---SIIAESIRDG--------- 340
Query: 373 TQMVEIGITPDVFTYTTLLSGFEKAGKD--ESAMKVFEEMRSAGCKPNICTFNALIKMHG 430
+ ++ D + ++ N L +
Sbjct: 341 ---------LATWDN------WKHVNCDKLTTIIESS--------------LNVL-EPAE 370
Query: 431 NRGNFVEMMKVFDEINKCNCK-PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER 489
R F + + VF + P I+ L++ + + S+V V ++ + + E+
Sbjct: 371 YRKMF-DRLSVFPP----SAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLV-EK 419
Query: 490 DTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEK 545
+ IS S + ++++ +++ YN ++ +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDH--------YNIPKT-------FDSDDL 464
Query: 546 IFAEMKGGRCKPNELTYSSLLH-AY-ANGREIDQMLALSEEIYSERAFLE--LKKKGFSP 601
I P Y H + E + + L ++ + FLE ++ +
Sbjct: 465 I---------PPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 602 DIPT--LNAM--ISIYGRRQMV-------AKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 650
+ LN + + Y + + N IL F+ + Y L+ +
Sbjct: 515 NASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 651 SENFARAEDVLREI 664
+E+ A E+ +++
Sbjct: 574 AEDEAIFEEAHKQV 587
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 25/204 (12%), Positives = 64/204 (31%), Gaps = 6/204 (2%)
Query: 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378
D+ EA + +++ Y + E+ + +++ I
Sbjct: 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350
Query: 379 GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG-CKPNICTFNALIKMHGNRGNFVE 437
Y + +A +S +F++ R + ++ AL++ + +
Sbjct: 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSV 409
Query: 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT---FNT 494
K+F+ K + D+ +F+ + +G +P + +
Sbjct: 410 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468
Query: 495 LISAYSRCGSFDQAMSIYKRMLEA 518
++ S G + + KR A
Sbjct: 469 FLAFESNIGDLASILKVEKRRFTA 492
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 26/234 (11%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMA 265
V A S + + + V + P + +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAHGL--TPAQVVAIASHDGGKQALE---TMQRL 245
Query: 266 LVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV-TYNALLDV 323
L ++ G+ PD + I + + V + G +PD+V +
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHGGG 303
Query: 324 YGKCRRPKEAMQVLRE-MKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381
+ + VL + + P +V S ++ + + Q G+T
Sbjct: 304 KQALETVQRLLPVLCQAHGLT---PDQVVAIASHDGGKQALETVQRLLPVLCQA--HGLT 358
Query: 382 PD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGN 434
PD V + G + + + V ++ G P+ + + G
Sbjct: 359 PDQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPD------QVVAIASNGG 404
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 57/515 (11%), Positives = 141/515 (27%), Gaps = 54/515 (10%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMA 265
V A S + + + V + G P + + +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVVAIASNIGGKQALE---TVQRL 279
Query: 266 LVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV-TYNALLDV 323
L ++ G+ PD + + + V + G +PD+V +
Sbjct: 280 LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC--QAHGLTPDQVVAIASHDGG 337
Query: 324 YGKCRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITP 382
+ + VL + +G P +V S ++ + + Q G+TP
Sbjct: 338 KQALETVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTP 393
Query: 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442
D G + + + V ++ G P+ + + + ++
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLC--QAHGLTPD------QVVAIASHDGGKQALETV 445
Query: 443 DEINKCNCK-----PD-IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496
+ C+ P +V + ++ V + + + I
Sbjct: 446 QRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL-TPDQVVAIASNI 504
Query: 497 SAYSRCGSFDQAMSIYKRMLEAGVTPD-LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC 555
+ + + + + +TPD + + ++ + +
Sbjct: 505 GGKQALATVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHGL 560
Query: 556 KPNELTYSSLLHAYANGREIDQMLALSEE-IYSERAFLELKKKGFSPDIPTLNAMISIYG 614
P+++ A A+ Q L + + L + + + I
Sbjct: 561 TPDQVV------AIASNGGGKQALETVQRLLPVLCQAHGLT----QVQVVAIASNIGGKQ 610
Query: 615 RRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPD- 672
+ V + + G TP+ + E R VL + + PD
Sbjct: 611 ALETVQR--LLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPDQ 666
Query: 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 707
+++ + ++ + + GL +
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLC--QAHGLTQE 699
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 27/234 (11%), Positives = 63/234 (26%), Gaps = 26/234 (11%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMA 265
V A S + + + V + P + + +
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNSGGKQALETVQRLLPV 298
Query: 266 LVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDK-VTYNALLDV 323
L ++ G+ P + + + V + G +P + V +
Sbjct: 299 LC---QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGG 353
Query: 324 YGKCRRPKEAMQVLRE-MKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381
+ + VL + + P +V S ++ + + Q G+T
Sbjct: 354 KQALETVQRLLPVLCQAHGLT---PEQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLT 408
Query: 382 PD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGN 434
P+ V + G + + + V ++ G P + + G
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQ----QVVA--IASNGG 454
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 27/234 (11%), Positives = 62/234 (26%), Gaps = 26/234 (11%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLI-TYNVILNVYGKMGMPWNKIMA 265
V A S + + + V + G P + + +
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 266 LVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKV-TYNALLDV 323
L ++ G+ P + + + V + G +P +V +
Sbjct: 197 LC---QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGG 251
Query: 324 YGKCRRPKEAMQVLRE-MKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381
+ + VL + + P +V S ++ + + Q G+T
Sbjct: 252 KQALETVQRLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQ--AHGLT 306
Query: 382 PD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGN 434
P V + G + + + V ++ G P + +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASHDG 352
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.73 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.33 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.98 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.75 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.38 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.21 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.11 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.29 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.78 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.69 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.58 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.4 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.96 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.81 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.59 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.57 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.42 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.99 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.56 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.29 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.27 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.17 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.91 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.46 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.39 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.3 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.5 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.21 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.09 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.64 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.11 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.08 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.4 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=369.35 Aligned_cols=514 Identities=11% Similarity=0.000 Sum_probs=333.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003829 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (793)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 262 (793)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|.+.| ++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHH
Confidence 345566655555555432 236778888888888888888888888888754 467778888888888888 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (793)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 342 (793)
|..+|+++... .++..+++.++.+|.+.|++++|..+|+++.. +.. ...++.+.++ ..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cc
Confidence 88888876532 45677777777777777777777777764211 110 0001111111 11
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH--HHH-HHHHHHCCCCCCH
Q 003829 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA--MKV-FEEMRSAGCKPNI 419 (793)
Q Consensus 343 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~ 419 (793)
.+.+.+..+|+.++.+|.+.|++++|++.|++|.+.+ +.+...+..+...+...+..+.+ ..+ +..+...+.....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 2344466778888888888888888888888887764 22444455444433322222211 111 3334433333344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.+|+.++.+|.+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 55666677777777777777777776654 356667777777777777777777777776665432 555666666666
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 579 (793)
.+.|++++|.++++++.+.... +..++..++..|.+.|++++|.++|+++.+..
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 403 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------------------------- 403 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------------
Confidence 6666666666666666644322 55566666666666666666666666554321
Q ss_pred HHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 580 ALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAED 659 (793)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 659 (793)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|++
T Consensus 404 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 404 --------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 2234456666666666677777777777776654 4577778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 660 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD--VITYNTFVASYAADSLFVEALDVVRY 733 (793)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 733 (793)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888753 446778888888888888888888888888774 55676 67888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 734 MIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 734 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+++.+ +.+..+|..++.+|.+.|++++|.++++++++.+|++..
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 88753 336788888888888888888888888888888887543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=361.72 Aligned_cols=503 Identities=11% Similarity=0.020 Sum_probs=376.6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
.+...+..++..+.+.|++++|..+|+.+... .|+..++..++.+|.+.|++++|+.+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 46778999999999999999999999999864 357789999999999999999999999998654 67899999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
.+|.+.| ++++|.++|+++. |+.. ...++.+.++ ...|...+..+|+.++.+|.+.|++
T Consensus 158 ~~~~~~g-~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 158 FCLVKLY-DWQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHTT-CHHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh-hHHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 9999999 9999999998532 2210 0111111111 1234566788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAME--L-KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVF 407 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 407 (793)
++|+++|++|.+.+ +.+...+..++..+...+..+.+.. + +..+...+......+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998763 2355566666665544433332221 1 455555544455567777788889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 003829 408 EEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIP 487 (793)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 487 (793)
+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.++.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998765 5789999999999999999999999999998765 3477889999999999999999999999998764 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 003829 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLH 567 (793)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 567 (793)
+..++..++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 7889999999999999999999999999886544 78899999999999999999999999988653 224444555555
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
+|.+ .|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 450 ~~~~--------------------------------------------~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 450 QHMQ--------------------------------------------LGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHH--------------------------------------------HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHH--------------------------------------------cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 5444 455555555555554432 3456666677777
Q ss_pred HHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 648 YSRSENFARAEDVLREILAK----GIKPD--IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHh
Confidence 77777777777777766654 44555 56777777777777777777777777776332 1567777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 722 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
|++++|.+.++++++. .| +...+..+..+|
T Consensus 564 g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 564 KIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 7777777777777764 34 356666665544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-26 Score=242.48 Aligned_cols=365 Identities=11% Similarity=0.018 Sum_probs=180.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (793)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 33444555555555555554432 2233344444444455555555555555544432 234455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML 516 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 516 (793)
+|++.|+++.... +.+...|..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5555555554432 122334555555555555555555555555544321 33344455555555556666666555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Q 003829 517 EAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKK 596 (793)
Q Consensus 517 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 596 (793)
+.... +..+|..+...+...|++++|...|+++...+ +.+...+..+...
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~---------------------------- 212 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV---------------------------- 212 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----------------------------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH----------------------------
Confidence 54322 44555555555555566666655555555431 1123333334444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 597 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 597 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
+...|++++|...+++..+.. +.+..++..++.+|...|++++|+..|+++.+.+ +.+..+|
T Consensus 213 ----------------~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 213 ----------------LKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp ----------------HHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred ----------------HHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 444444444444444444332 2334445555555555555555555555555432 2234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL 756 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 756 (793)
..++.++.+.|++++|.+.|+++++... .+..++..++.++...|++++|+..++++++. .+.+..++..++.+|.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 5555555555555555555555555211 13445555555555555555555555555542 122244555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCC
Q 003829 757 NQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 757 g~~~~A~~~~~~~~~~~~~ 775 (793)
|++++|...++++++..|+
T Consensus 353 g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 5555555555555555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-26 Score=238.98 Aligned_cols=381 Identities=12% Similarity=0.054 Sum_probs=270.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 259 (793)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.| +
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-C
Confidence 34555677777777777777665443 56666677777777777777777777777653 346677777777777777 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 260 WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLRE 339 (793)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 339 (793)
+++|++.|+++.+..+. +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777765322 45567777777777777777777777777653 22345566677777777788888877777
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 340 MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNI 419 (793)
Q Consensus 340 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (793)
+.+. .+.+..+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 7765 23355677777777777888888888887777764 3356667777777777788888888777776653 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
.++..+...|...|++++|++.|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 777777778888888888888888777653 3346677777788888888888888888877764 34677788888888
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcC
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANG 572 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (793)
...|++++|.+.++++.+.... +..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 8888888888888888776433 57778888888888888888888888887642 22455566555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=264.20 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------CHH
Q 003829 191 VAASLLHGLHKDGFDIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM--------PWN 261 (793)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~--------~~~ 261 (793)
.++.+.+.+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ..+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445555555544443 35677778888888888888888888888888888888888888776551 135
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003829 262 KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMK 341 (793)
Q Consensus 262 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 341 (793)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555556666555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 342 INGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 342 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=261.67 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------H
Q 003829 226 EAVMVFKKMEEEGCKPTL-ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---------H 295 (793)
Q Consensus 226 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~ 295 (793)
.+..+.+++.+.+..... ..++.+|++|++.| ++++|.++|++|.+.|+.||..+|+++|.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555666665554443 34677777777777 777777777777777777777777777777776543 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (793)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (793)
Q Consensus 376 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (793)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777776664
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-24 Score=235.08 Aligned_cols=455 Identities=11% Similarity=-0.013 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 280 YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
..+......+.+.|++++|...|+++.+.+ |+...|..++.+|.+.|++++|+..++++.+.+ +.+..+|..++.+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345555555666666666666666666653 456666666666666666666666666665542 23445666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMM 439 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 439 (793)
.+.|++++|.+.|+++...+ +++......++..+........+.+.+..+...+..++......-......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 154 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK-------- 154 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh--------
Confidence 66666666666666666553 223333333333333333333333333333222222111111110000000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHH
Q 003829 440 KVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKRML 516 (793)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 516 (793)
....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++.
T Consensus 155 --------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 155 --------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred --------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 00011111111111000000000 000001123344444444443 677888888887777
Q ss_pred H-----CCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 003829 517 E-----AGVT--------PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSE 583 (793)
Q Consensus 517 ~-----~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (793)
+ .... .+...+..+...+...|++++|...++++.+.. |+...+..+..++...|++++|+..++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6 3111 134566667777888888888888888877653 336677777788888888888888777
Q ss_pred HHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 584 EIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
+++. ..+.+..++..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..+++
T Consensus 295 ~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 295 KALK----------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp HHHT----------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHhh----------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 123356677888888888888888888888888764 45677788888888888999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAA---DSLFVEALDVVRYMI 735 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 735 (793)
+.+.. +.+...+..++.+|...|++++|..+++++.+.... ++ ...+..++.+|.. .|++++|+..+++++
T Consensus 364 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 364 AKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 88752 335678888888888889999999998888873211 11 2378888888888 888999999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 736 KQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 736 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+.. +.+..++..++.+|.+.|++++|...++++++.+|++...
T Consensus 443 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 443 KLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 752 3357788888888889999999999999999888876554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-23 Score=226.14 Aligned_cols=459 Identities=8% Similarity=-0.046 Sum_probs=304.3
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 242 TLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALL 321 (793)
Q Consensus 242 ~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li 321 (793)
....+......+.+.| ++++|+..|+++.+.+ |+..++..+..++.+.|++++|...++++.+.+ +.+..+|..++
T Consensus 5 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNK-KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 3567888899999999 9999999999999875 689999999999999999999999999999875 44678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
.+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE--- 156 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc---
Confidence 99999999999999999998874 34555666666666665556666666655555544444332222111111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ---NGMDSEVSGVFK 478 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 478 (793)
..|+.......+..+...... . ....+.+...+......+.. .|++++|..+|+
T Consensus 157 -------------~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 157 -------------NLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred -------------CCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 112222111111110000000 0 00001112333333333332 555666666666
Q ss_pred HHHH-----cCC--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003829 479 EMKR-----AGF--------IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEK 545 (793)
Q Consensus 479 ~m~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 545 (793)
++.+ ... +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHH
Confidence 5555 210 112345666677777777777777777777766433 6677777777777888888888
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003829 546 IFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEI 625 (793)
Q Consensus 546 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 625 (793)
.++++.... +.+...+..+...+...|++++|+..+++++. . .+.+...+..++..+...|++++|...
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE---------L-DPENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH---------T-CSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------h-ChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887777643 33556677777777788888888887776542 1 133456777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHH
Q 003829 626 LHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCR---NGRMKEASRIFS 697 (793)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~ 697 (793)
++++.+.. +.+..++..++..+...|++++|...++++.+.... ++ ...|..++.++.. .|++++|.+.++
T Consensus 361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 88887763 456778888888999999999999999988864211 11 3378888899999 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003829 698 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 748 (793)
Q Consensus 698 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 748 (793)
++.+.... +..++..++.+|...|++++|...++++++. .|+ ...+..
T Consensus 440 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~ 488 (514)
T 2gw1_A 440 KASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQA 488 (514)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHH
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHH
Confidence 99884322 5678889999999999999999999999884 455 444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-22 Score=222.06 Aligned_cols=261 Identities=11% Similarity=0.046 Sum_probs=175.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH
Q 003829 503 GSFDQAMSIYKRMLEAGVTPDL-------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (793)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 575 (793)
|++++|..+++++.+.... +. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 3566777777776665333 22 23455556666777777777777777664 34466666777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003829 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA 655 (793)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 655 (793)
++|+..+++++.. .+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 293 ~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 293 QEFFKFFQKAVDL----------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 7777777665431 13356677777777777888888888887777654 445667777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc---------
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-----VPDVITYNTFVASYAAD--------- 721 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~--------- 721 (793)
+|...++++.+.. +.+...+..++.++...|++++|.+.|+++.+... .-....+..++.++...
T Consensus 362 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 362 ESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888877752 33466777777888888888888888887775211 11123345556667776
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 722 -SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 722 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|++++|+..++++++.. +.+...+..++.+|.+.|++++|...++++++..|+.+..
T Consensus 441 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888877642 2346777778888888888888888888888887776554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-21 Score=208.66 Aligned_cols=350 Identities=11% Similarity=0.086 Sum_probs=227.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (793)
Q Consensus 383 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (793)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..++.+|...|++++|.+.|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44555566666666666666666666665542 2345566666666666666666666666665543 223455555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 463 VFGQNGMDSEVSGVFKEMKRAGFIPER---DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
.|...|++++|...|+++.+.... +. ..+..++..+.. ..+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 666666666666666655554211 22 233333222100 011222334666777
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
+++|...|+++.+.. +.+..++..+..+|...|++++|+..++++... .+.+..++..++..|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL----------KNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------HCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCH
Confidence 777777777776542 335666777777777777777777777765431 134567777777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSGFTPSLTTYNTL------------MYMYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFA 682 (793)
Q Consensus 620 ~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~ 682 (793)
++|...|+++.+.. +.+...+..+ +..+...|++++|+..|+++.+. .|+ ...|..++.+
T Consensus 228 ~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 88888887777653 3445555444 77888888899999998888875 344 3467788888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH---------
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD--------- 751 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~--------- 751 (793)
+.+.|++++|..+++++.+ ..| +..+|..++.+|...|++++|+..++++++ +.|+ ...+..+..
T Consensus 305 ~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhccc
Confidence 8888999999999988887 344 568888888888889999999999998887 3454 666666663
Q ss_pred ---HHHccC-----CHHHHHHHHHH-HhhCCCCC
Q 003829 752 ---GYCKLN-----QRYEAITFVNN-LSKLDPHV 776 (793)
Q Consensus 752 ---~~~~~g-----~~~~A~~~~~~-~~~~~~~~ 776 (793)
.|...| +.+++.+.+++ +++..|+.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 344445 66788888887 77777764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-21 Score=205.88 Aligned_cols=317 Identities=11% Similarity=0.051 Sum_probs=238.0
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 170 VLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVI 249 (793)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 249 (793)
+.+..++..++..+.+.|++++|..+|+.+.+..+. +..++..++.++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 347788889999999999999999999999876444 78899999999999999999999999999875 3368889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 003829 250 LNVYGKMGMPWNKIMALVEGMKSAGVKPDS---YTFNTL------------ISCCRRGSLHEEAAGVFEEMKLAGFSPDK 314 (793)
Q Consensus 250 l~~~~~~g~~~~~a~~~~~~~~~~~~~p~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~g~~~~~ 314 (793)
+..|.+.| ++++|...|+++.+.+.. +. ..+..+ ...+.+.|++++|..+|+++.+.. +.+.
T Consensus 101 ~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 101 GHLLLKQG-KLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 99999999 899999999999886432 23 444444 334778889999999998888763 3467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 003829 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTL---- 390 (793)
Q Consensus 315 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l---- 390 (793)
..+..++.+|.+.|++++|.+.|+++.+. .+.+..+|..++..|...|++++|++.|+++.+.. +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 78888888899999999999999888775 33467788888888999999999999998888763 3344444433
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 391 --------LSGFEKAGKDESAMKVFEEMRSAGCKPN----ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWN 458 (793)
Q Consensus 391 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 458 (793)
...+...|++++|...|+++.+.... + ...+..+..++.+.|++++|++.++++.... +.+...|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 66677777777777777777764211 2 3356667777777777777777777766542 33566777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 459 TLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLI 496 (793)
Q Consensus 459 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 496 (793)
.+..+|...|++++|...++++.+.... +...+..+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 7777777777777777777777764322 344444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-21 Score=212.61 Aligned_cols=448 Identities=11% Similarity=0.041 Sum_probs=254.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
....+......+.+.|++++|...|+.++...+. +..++..++.+|.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4566777777888888888888888887776543 67778888888888888888888888887764 336667777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCC
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAG--FSPDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~ 329 (793)
.+...| ++++|...|+ .......+. ...+..+...+...+|...++++.... ..+........+..+....+
T Consensus 102 ~~~~~g-~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLG-NFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHT-CHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcC-CHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 777777 7777777775 332221111 111223333344456666666654321 00011111223333444445
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIV-TYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 408 (793)
.+.+...+..... ..+... ....+...+...+ -......|++++|..+++
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHH
Confidence 4444433333211 111111 1111111111110 000111234555555555
Q ss_pred HHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 409 EMRSAGCKPN-------ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 409 ~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
++.+.... + ..++..+...+...|++++|.+.++++... .|+...|..+...+...|++++|...++++.
T Consensus 227 ~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 227 SLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 55544211 1 123445555666677777777777776665 3446666667777777777777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhh
Q 003829 482 RAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELT 561 (793)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 561 (793)
+.... +..++..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 65432 5667777777788888888888888887776544 55677777788888888888888888877652 335667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 003829 562 YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR----------QMVAKTNEILHFMND 631 (793)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 631 (793)
+..+...+...|++++|...+++++... -...........+..+...+... |++++|...|+++.+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcC----CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 7777888888888888888887765311 00111111222233344444444 556666666655555
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 632 SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 632 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
.. +.+..++..+..+|.+.|++++|...|+++.+.
T Consensus 457 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 43 344555555555555555555555555555553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-17 Score=180.20 Aligned_cols=552 Identities=11% Similarity=0.157 Sum_probs=379.9
Q ss_pred ccccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 003829 132 LGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAY 211 (793)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 211 (793)
.+.++...++++...|.+.+|+++++.+.-. ...+..+....+.++....+. +.....++.+..... ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 3345677888899999999999999988641 111223455666666666666 445555555554322 13
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003829 212 TSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRR 291 (793)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 291 (793)
..+...+...|.+++|..+|++.. -.....+.++. ..| ++++|.++.++.. +..+|..+..++..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence 447788889999999999999963 13333444443 556 7999999998662 57889999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
.|++++|...|.+. -|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999999654 377888899999999999999999999877753 3333344589999999998864444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003829 372 KTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK 451 (793)
Q Consensus 372 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 451 (793)
+ + .++...+..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 2 2 346667778999999999999999999985 37999999999999999999999986
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVL 531 (793)
Q Consensus 452 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 531 (793)
.+..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 3679999999999999999998876553 33467778899999999999999999998887664 22445666666
Q ss_pred HHHHh--cCChHHHHHHHHHHhcCCCCC------CHhhHHHHHHHHHcCCCHHHHHHHHHHH----HhHHHHHHHHHCCC
Q 003829 532 AALAR--GGMWEQSEKIFAEMKGGRCKP------NELTYSSLLHAYANGREIDQMLALSEEI----YSERAFLELKKKGF 599 (793)
Q Consensus 532 ~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 599 (793)
..+++ -++..++.++|..-.. +++ +...|..+...|.+.|+++.|....-+- .+...|++....
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k-- 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-- 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--
Confidence 66665 3455566666654332 222 4567888999999999999998433221 123334443322
Q ss_pred CCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHccCCH
Q 003829 600 SPDIPTLNAMISIYGRRQ---------------MVAKTNEILHFMNDS----------GFTPSLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~ 654 (793)
..+...|...+..|...+ +++++..+|.+.-.. ....+..+-..+.+.|....++
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~ 1477 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 1477 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccch
Confidence 346666766666666544 666666555521100 0012233333444445444444
Q ss_pred HHHHHHH------------HHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 655 ARAEDVL------------REILAKGIKPDIISYNTVI-FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 721 (793)
Q Consensus 655 ~~A~~~~------------~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 721 (793)
+.-++-. +++.+. +..-+..+. ..|.++|+|+.|.+++.+... |.-.+.+..++
T Consensus 1478 ~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S 1544 (1630)
T 1xi4_A 1478 QALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASES 1544 (1630)
T ss_pred HHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHc
Confidence 3221111 111111 112223333 344555889998888865432 55667778889
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 722 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
|+.+.+.+++.-..+.| +.+.|...+..|+..=+.|.+.++
T Consensus 1545 ~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1545 KDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCchHHHHH
Confidence 99999988888888643 567787777777777777766653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-17 Score=180.47 Aligned_cols=394 Identities=13% Similarity=0.027 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCH
Q 003829 313 DKVTYNALLDVYGK----CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR----DGLLEEAMELKTQMVEIGITPDV 384 (793)
Q Consensus 313 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 384 (793)
+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445444544 455555555555554432 33444445555554 455555555555554443 33
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 385 FTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTL 460 (793)
Q Consensus 385 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 460 (793)
..+..+...|.. .+++++|...|++..+.| +...+..+..+|....
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~--------------------------- 161 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD--------------------------- 161 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------------------
Confidence 344444444444 444555555555544433 3334444444444300
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 461 LAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR 536 (793)
Q Consensus 461 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 536 (793)
...++.++|.+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 162 ----g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 162 ----GVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp ----SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 00444555555555544432 34444555555544 555666666666555543 34455555555553
Q ss_pred ----cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHH
Q 003829 537 ----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNA 608 (793)
Q Consensus 537 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (793)
.++.++|...|++..+.+ +...+..+...|.. .++.++|+.++++..+ ..+...+..
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~------------~~~~~a~~~ 296 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE------------QGNSDGQYY 296 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT------------TTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH------------cCCHHHHHH
Confidence 556666666666665532 33444445555554 5666666666655431 124455666
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 609 MISIYGRR-----QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 609 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
+...|... +++++|...|++..+.+ +...+..+...|...| ++++|++.|++..+.+ +...+..+.
T Consensus 297 Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg 370 (490)
T 2xm6_A 297 LAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLG 370 (490)
T ss_dssp HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 66666665 78888888888888765 5566777777777655 7888999999888863 677888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-C-CHHHHHHHH
Q 003829 681 FAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCK-P-NQNTYNSIV 750 (793)
Q Consensus 681 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~ 750 (793)
..|.. .+++++|.++|+++.+.| +...+..|+..|.. .+++++|...|+++.+.+.. | +......+.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~ 447 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK 447 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence 88888 788999999999988854 46778888888887 78899999999998876532 2 344444444
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
..+. .+.++|.+..++..+..|+...
T Consensus 448 ~~~~--~~~~~a~~~a~~~~~~~~~~~~ 473 (490)
T 2xm6_A 448 KLTA--KQLQQAELLSQQYIEKYAPEAW 473 (490)
T ss_dssp TSCH--HHHHHHHHHHHHHHHHHCHHHH
T ss_pred hcCH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 3445566566666665554333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-19 Score=183.21 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 419 ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISA 498 (793)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 498 (793)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555556666666666666666655432 223445555555555555555555555555554321 34455555555
Q ss_pred HhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 576 (793)
+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555555543210 01111111111100 011222356788899999
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 577 QMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 656 (793)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 656 (793)
+|+..++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 138 ~A~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 138 AAITFLDKILEV----------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHh----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999998876531 24567889999999999999999999999999875 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 003829 657 AEDVLREILAKGIKPDIISYN------------TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAA 720 (793)
Q Consensus 657 A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 720 (793)
|...++++.+.. +.+...+. .++..+...|++++|...++++.+.... +. ..+..++.++..
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 999999999863 33344333 3367799999999999999999984322 22 335678899999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 721 DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.|++++|+..++++++.. +.+..++..++.+|.+.|++++|...++++++.+|++...
T Consensus 285 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999852 3368899999999999999999999999999999986554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-16 Score=171.74 Aligned_cols=531 Identities=12% Similarity=0.119 Sum_probs=325.7
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHH---------H-HHHhhCCCCC
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASL---------L-HGLHKDGFDI 206 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---------~-~~~~~~~~~~ 206 (793)
..+++...++++...-+.+++.-.. ....++.+++.++.++...++-.+.+-. . +-..+.++..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~------~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~l 916 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIH------EGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHL 916 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcch
Confidence 3344445555555444444444333 2335778899999998877654432110 0 0111111110
Q ss_pred CHHH------HHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--CC
Q 003829 207 DVYA------YTSLITTYASNGRYREA-VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGV--KP 277 (793)
Q Consensus 207 ~~~~------~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~--~p 277 (793)
...+ -.-||...-+++-++.. +.+.++ -|...|..++.- +-+.-..+.+......+ .-
T Consensus 917 a~iay~~g~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~~------~n~~RR~Lidqv~a~aL~e~~ 983 (1630)
T 1xi4_A 917 ACVAYERGQCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLLE------SNPYRRPLIDQVVQTALSETQ 983 (1630)
T ss_pred HHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhcC------CcHHHHHHHHHHHHhhccccc
Confidence 0001 12344444445544332 222222 255566655521 11222233333222211 12
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
|..-......+|...|.+.+|.+++++....+- .-+...-+.|+....+. +..+..++.++.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 333445566778888999999999998884421 12345556666666665 556666666665321 13346
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 356 ISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNF 435 (793)
Q Consensus 356 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 435 (793)
...+...|.+++|..+|++... .....+.++ ...|++++|.++.++. .+..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 7778888999999998888521 122222222 2678888888888755 2577888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003829 436 VEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRM 515 (793)
Q Consensus 436 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 515 (793)
++|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++......++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9998888663 467788888888889999999999888777654 23333335888888888877543332
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHH
Q 003829 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELK 595 (793)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (793)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|++.+++.
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---------- 1247 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---------- 1247 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----------
Confidence 2 245666777888888889999999888875 36888888888888888888887642
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 003829 596 KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS 675 (793)
Q Consensus 596 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 675 (793)
.+..+|..+..+|...|+++.|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 35577777777777778877777765532 3355666677788888888888888887777543 223445
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHH-------------HHHH
Q 003829 676 YNTVIFAYCRN--GRMKEASRIFSEMRDSGLVP------DVITYNTFVASYAADSLFVEALDV-------------VRYM 734 (793)
Q Consensus 676 ~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~ 734 (793)
|..+...|++. ++..++.++|..-.+ +.+ +...|..++..|.+.|+++.|+.. |+..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 55555555543 455666666654433 222 345677777788888888877622 2222
Q ss_pred HHcCCCCCHHHHHHHHHHHHccC
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
+. ...|.+.|...+..|...+
T Consensus 1395 i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1395 IT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hc--ccccHHHHHHHHHHHHhhC
Confidence 21 1335666766666666555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-17 Score=176.93 Aligned_cols=365 Identities=15% Similarity=0.082 Sum_probs=287.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 003829 369 MELKTQMVEIGITPDVFTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMK 440 (793)
Q Consensus 369 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 440 (793)
++.++...+.| +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444433 45555555555555 566667777766666653 45566666666666 667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHH
Q 003829 441 VFDEINKCNCKPDIVTWNTLLAVFGQ----NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIY 512 (793)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 512 (793)
.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777766643 45556666666666 667777777777777664 56677777777776 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHH
Q 003829 513 KRMLEAGVTPDLSTYNAVLAALAR----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEE 584 (793)
Q Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 584 (793)
++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|+.++++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999874 77888888888887 899999999999998754 56777778888875 7899999999887
Q ss_pred HHhHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-----CCHH
Q 003829 585 IYSERAFLELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-----ENFA 655 (793)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 655 (793)
... ..+...+..+...|.. .++.++|.+.|++..+.| +...+..+...|... ++++
T Consensus 249 a~~------------~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 249 SAE------------QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHT------------TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHH------------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 543 2356777788888877 899999999999998865 667788888888877 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEAL 728 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 728 (793)
+|+..|++..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..|+..|.. .+++++|+
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999999865 5677888888888866 8999999999999953 67889999999998 89999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 775 (793)
+.++++.+.| +...+..|+..|.+ .+++++|..+++++.+.+|+
T Consensus 388 ~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 388 IWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999865 57888899999988 89999999999999999965
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-18 Score=173.92 Aligned_cols=332 Identities=12% Similarity=0.058 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+...|++++|...|+.+++..+. +..++..++.++...|++++|+..|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456677777778888888888888887776443 67778888888888888888888888887764 236677778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVK--PDSYTFNTL------------ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTY 317 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~--p~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~ 317 (793)
.+...| ++++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+...+
T Consensus 80 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQG-KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcC-ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 888888 788888888887765431 122233333 234445555555555555554442 2234445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003829 318 NALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (793)
Q Consensus 318 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 397 (793)
..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH----
Confidence 55555555555555555555555443 22234445555555555555555555555554432 1121111111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHH
Q 003829 398 GKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDI----VTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 473 (793)
. .......+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 0000112244455666666666666665554211 11 2233455566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALA 535 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 535 (793)
...+++..+... .+..++..+...+...|++++|.+.|+++.+.... +...+..+..+..
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 666666665532 25556666666666677777777777766665433 4455555544443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=171.33 Aligned_cols=284 Identities=10% Similarity=-0.023 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (793)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 532 (793)
+...+..+...+...|++++|..+|+++.+.... +...+..++..+...|++++|..+++++.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 3444445555555555555555555555554322 3344444555555666666666666666554332 4455555555
Q ss_pred HHHhcC-ChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 533 ALARGG-MWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS 611 (793)
Q Consensus 533 ~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 611 (793)
.+...| ++++|...|+++.... +.+...+..+...+...|++++|+..++++... .+.+...+..+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~l~~ 167 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----------MKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------TTTCSHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------ccccHHHHHHHHH
Confidence 666666 5666666666655432 223444555555555555555555555443320 0112333444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG--------IKPDIISYNTVIFAY 683 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 683 (793)
.+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..++.+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 5555555555555555555543 3444555555555555555555555555555421 011234555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
...|++++|...++++.+.... +...+..++.+|...|++++|.+.++++++. .| +...+..++.++
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 5555555555555555552111 2344555555555555555555555555442 23 344455555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-18 Score=171.41 Aligned_cols=287 Identities=13% Similarity=0.000 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
..+...+..++..+...|++++|.++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 446667888889999999999999999999987554 55667777888899999999999999998753 3467788889
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003829 566 LHAYANGR-EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTL 644 (793)
Q Consensus 566 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 644 (793)
...+...| ++++|...+++++. . .+.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~---------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATT---------L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHT---------T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH---------h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 99999999 99999999887643 1 23457789999999999999999999999999875 4566778889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHH
Q 003829 645 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--------VPDVITYNTFVA 716 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~l~~ 716 (793)
...|...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+... ..+..++..++.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999863 44678999999999999999999999999987310 223478999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 717 SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+|...|++++|+..++++++.. +.+...+..++.+|.+.|++++|...++++++.+|++.. .+..+...+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF-SVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH-HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH-HHHHHHHHH
Confidence 9999999999999999999853 335788999999999999999999999999999998544 344444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-16 Score=169.57 Aligned_cols=220 Identities=8% Similarity=0.001 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHhHHHHHHHHHCCCCCCHHHHH
Q 003829 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYAN-------GREID-------QMLALSEEIYSERAFLELKKKGFSPDIPTLN 607 (793)
Q Consensus 542 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (793)
.+..+|++..... +.+...|..++..+.. .|+++ +|..++++.+. .-.+.+...+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~---------~~~p~~~~l~~ 325 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---------TLLKKNMLLYF 325 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---------TTCSSCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH---------HhCcccHHHHH
Confidence 5666666666541 3355566666665553 57765 77777775431 01233567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHH
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDSGFTPSL-TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCR 685 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 685 (793)
.++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|+++|++..+.. +.+...|...+.. +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHH
Confidence 88888888888888888888888753 2233 478888888888888888998888888752 2233333333322 345
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCCHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKPN--QNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~ 761 (793)
.|+.++|..+|+++++. .| +...+..++..+.+.|+.++|..+|+++++.+ ..|+ ...|...+......|+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp TCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 78899999999988873 34 46788888888888899999999999988753 2232 4477777887888899999
Q ss_pred HHHHHHHHhhCCCC
Q 003829 762 AITFVNNLSKLDPH 775 (793)
Q Consensus 762 A~~~~~~~~~~~~~ 775 (793)
+..+.+++.+..|+
T Consensus 482 ~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 482 ILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCch
Confidence 99999888888773
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-16 Score=170.41 Aligned_cols=414 Identities=12% Similarity=0.067 Sum_probs=248.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003829 302 FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGIT 381 (793)
Q Consensus 302 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 381 (793)
+++.++.. +-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|.++|++++.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 45555542 346778888887 47789999999999999875 4556778899999999999999999999998876 3
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 003829 382 PDVFTYTTLLSGF-EKAGKDESAMK----VFEEMRSA-GCK-PNICTFNALIKMHGN---------RGNFVEMMKVFDEI 445 (793)
Q Consensus 382 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 445 (793)
|+...|...+... ...|++++|.+ +|+..+.. |.. .+...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5776666666433 34577766655 66665542 433 346677777776554 67788888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH------HCC
Q 003829 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRML------EAG 519 (793)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~ 519 (793)
+..........|..........| ..+...++. ...++++.|..++.... +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 76311111123322221110001 001111110 12344555555555421 111
Q ss_pred ---CCCCH--------HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--------hhHHHHHHHHHcCCCHHHHHH
Q 003829 520 ---VTPDL--------STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE--------LTYSSLLHAYANGREIDQMLA 580 (793)
Q Consensus 520 ---~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~ 580 (793)
+.|+. ..|...+... .-...+.. +. ..|...+.. ......+.-
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e--------------~~~~~~~~-~~~~~~~~a~~~y~~al~~---~p~~~~~w~ 276 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWE--------------KSNPLRTE-DQTLITKRVMFAYEQCLLV---LGHHPDIWY 276 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHH--------------HHCSSCCS-CSHHHHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHH--------------HcCCccCC-cchhHHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 12221 1121111100 00000000 10 012222211 111111111
Q ss_pred HHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003829 581 LSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 660 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 660 (793)
.+-.+... ....+...|- .+. . . ...++|..+|++..+.-.+.+...|..++..+.+.|++++|..+
T Consensus 277 ~~~~~~~~-~~~~~~~~g~-~~~--a----~-----~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 277 EAAQYLEQ-SSKLLAEKGD-MNN--A----K-----LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHHHHH-HHHHHHTTTC-CHH--H----H-----HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-hchhhhhccc-hhh--h----h-----hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111000 0000001221 110 0 0 01678899999998632356788999999999999999999999
Q ss_pred HHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHc
Q 003829 661 LREILAKGIKPD-I-ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 661 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~ 737 (793)
|+++++. .|+ . ..|..++..+.+.|++++|.++|+++++.... +...|...+.. +...|+.++|..+|+++++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9999985 454 3 58999999999999999999999999984221 33444443333 34689999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 738 GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 738 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
. +.+...|..++..+.+.|+.++|+.+++++++..|.++
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 2 33588999999999999999999999999999876543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-16 Score=172.86 Aligned_cols=304 Identities=7% Similarity=-0.047 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCH
Q 003829 433 GNFVEMMKVFDEINKCNCKPDIVTWNTLLAV---FGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSF 505 (793)
Q Consensus 433 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~ 505 (793)
+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.... +...+..+...+.. .|++
T Consensus 152 ~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHH
Confidence 34556666666555442 1123333333322 23445566666666666655322 44444444443332 3556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
++|.+.+++....... +...+..+...|...|++++|...+++..+.. +.+..++..+..+|...+....+
T Consensus 230 ~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~------- 300 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN------- 300 (472)
T ss_dssp CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh-------
Confidence 6777777777665444 66677777777788888888888887776642 22444555555444321111000
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
.. . ..........+..++|...+++..+.. +.+..++..+...|...|++++|+..|++++
T Consensus 301 -----------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 301 -----------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp -----------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 00 0 000001111233677888888887764 4556678888999999999999999999999
Q ss_pred HCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 666 AKGIKPDI--ISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 666 ~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+....+.. ..+..+.. .+...|++++|+..|+++++ +.|+...... ..+.+.+++++.++.+ +.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~ 429 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKN-GAD 429 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHC-C-C
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhC-CCC
Confidence 86433222 12333333 34567899999999999999 6665432222 2344556677777643 446
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
..+|..++.+|...|++++|++.|+++++.+|.++.
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 889999999999999999999999999999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=175.24 Aligned_cols=275 Identities=11% Similarity=-0.001 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (793)
..+..+...+.+.|++++|.+.|+++.+.... +..++..+...+...|++++|...|+++.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34555666666666666666666666665433 55666666666666666666666666666542 23455666666666
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYM 647 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 647 (793)
...|++++|+..+++++....-..............+..+...+...|++++|..+++++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6667777776666665431000000000000113345566788999999999999999999874 33 68899999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVE 726 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 726 (793)
|...|++++|+..++++.+.. +.+..+|..++.+|...|++++|...|+++++ ..| +..++..++.+|...|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999863 44688999999999999999999999999999 445 47889999999999999999
Q ss_pred HHHHHHHHHHcCCC---C--------CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 727 ALDVVRYMIKQGCK---P--------NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 727 A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
|+..++++++..-. + +..+|..+..++...|+.+.|....++.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999863200 0 25789999999999999999988877644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-17 Score=168.53 Aligned_cols=305 Identities=11% Similarity=-0.025 Sum_probs=156.8
Q ss_pred CCChHHHHH-HHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 146 HKKTDLALD-VFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 146 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
.|+++.|+. .|.........++ ..+...+..+...+...|++++|...|+.+++..+. +..++..++.++.+.|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENP--LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCT--TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCc--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCH
Confidence 456667776 6665543211111 113445666777777788888888888877776543 667777777777788888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
++|+..|+++.+.. +.+..++..+...|...| ++++|...++++.+.... +...+..+...
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~---------------- 175 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG---------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH----------------
Confidence 88888887777764 336677777777777777 777777777777765433 11111111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003829 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD 383 (793)
Q Consensus 305 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 383 (793)
... .. ....+..+.. +...|++++|...|+++.+..... +..++..++..|.+.|++++|++.++++.+.. +.+
T Consensus 176 -~~~-~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 176 -AGG-AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -hhh-hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 00 0000001111 224455555555555554432111 24445555555555555555555555555442 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 003829 384 VFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCK----------PD 453 (793)
Q Consensus 384 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~ 453 (793)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++...... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4455555555555555555555555554432 223445555555555555555555555554432110 01
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFK 478 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~ 478 (793)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4555566666666666666655554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-17 Score=169.53 Aligned_cols=306 Identities=11% Similarity=0.028 Sum_probs=215.7
Q ss_pred HhcCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 003829 430 GNRGNFVEMMK-VFDEINKCNC---KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505 (793)
Q Consensus 430 ~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 505 (793)
...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+... .+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34467777777 6665443311 11345567777778888888888888888887643 3667788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 506 DQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 506 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
++|.+.|+++.+.... +..++..+...+...|++++|...++++.... +.+...+..+... ....
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~------ 179 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AGGA------ 179 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hhhh------
Confidence 8888888888876544 77788888888888899999999888888653 1122222111000 0000
Q ss_pred HhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003829 586 YSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYMYSRSENFARAEDVLRE 663 (793)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 663 (793)
.+ ...+..+...+ ..|++++|...++++.+.. +. +..++..++.+|...|++++|+..+++
T Consensus 180 --------------~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 180 --------------GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ---------------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 01111222233 7788999999999888764 33 578888999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 664 ILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 664 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+.+.. +.+..+|..++.++...|++++|...|+++++. .| +..++..++.+|...|++++|+..++++++.. +.+
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 318 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKS 318 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 98863 445788999999999999999999999999884 44 56888999999999999999999999988632 112
Q ss_pred -----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 743 -----------QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 743 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+|..++.+|.+.|++++|..++++.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 678999999999999999999988766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-16 Score=157.76 Aligned_cols=239 Identities=13% Similarity=0.182 Sum_probs=81.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIM 264 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~ 264 (793)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...| ++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHHHH
Confidence 5566777777777762 2347777777777777777777777543 35567777777777777 677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 265 ALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING 344 (793)
Q Consensus 265 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 344 (793)
.+++...+. .++..+...++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3345666777777777777777766663 245567777777777777777777777755
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 345 CLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNA 424 (793)
Q Consensus 345 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 424 (793)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|+..|+++.|......+ ..+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 35777777777777777777777766 15667777777777777777774433321 223333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ 466 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (793)
++..|.+.|++++|..+++...... +-....|+.|.-.|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6667777777777777777665443 3334555555444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=164.76 Aligned_cols=267 Identities=15% Similarity=-0.015 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+.+.|++++|...|+.+++..+. +..++..++.+|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445777788888888888888888888776544 67788888888888888888888888888764 336778888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKP---------DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS-PDKVTYNALL 321 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-~~~~~~~~li 321 (793)
.|...| ++++|+..++++.+..... ....+..+...+...|++++|..+++++.+.... .+..++..+.
T Consensus 142 ~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTS-HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccc-cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888 7888888888887643210 0112223355666777777777777777665311 1456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 322 DVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE 401 (793)
Q Consensus 322 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 401 (793)
..|.+.|++++|++.|+++.+. .+.+..+|..++.+|...|++++|++.|+++.+.. +.+..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777776665 23355667777777777777777777777776652 334566666667777777777
Q ss_pred HHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 402 SAMKVFEEMRSAGCK-----------PNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 402 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+|...++++.+.... .+..+|..+..++...|+.+.+.++..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777766543110 023455556666666666655555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-16 Score=159.15 Aligned_cols=282 Identities=10% Similarity=0.071 Sum_probs=116.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003829 220 SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAA 299 (793)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 299 (793)
+.|++++|.++++++. +..+|..|+.++.+.| ++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6788999999999983 2348999999999999 899999999653 47778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003829 300 GVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (793)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (793)
.+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988777664 4567788899999999999999888884 357779999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (793)
Q Consensus 380 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (793)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24888999999999999999999888 27888999999999999999996554432 223344456
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHH
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA-GVTP------DLSTYNAVLA 532 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 532 (793)
++..|.+.|++++|..+++...... .-....|+-+...|++- +++...+.++....+ ++++ +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888777654 33556677776666654 233333333332221 1111 2334555555
Q ss_pred HHHhcCChHHHHH
Q 003829 533 ALARGGMWEQSEK 545 (793)
Q Consensus 533 ~~~~~g~~~~A~~ 545 (793)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666665555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=159.34 Aligned_cols=284 Identities=13% Similarity=0.000 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (793)
Q Consensus 453 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 532 (793)
+...+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 3445666777788888888888888888776433 6677777788888888888888888888776443 6677777777
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHH-
Q 003829 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMIS- 611 (793)
Q Consensus 533 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 611 (793)
.+...|++++|...++++.+.. +.+...+..+...+ ++......+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD-------------------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH-------------------------------HHHHHHHHHHHh
Confidence 8888888888888888877642 11222222221110 11111112212
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003829 612 -IYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 612 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 690 (793)
.+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...|..++.++...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 3667889999999999998875 5688899999999999999999999999999863 446788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHccCCH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-----------NQNTYNSIVDGYCKLNQR 759 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~ 759 (793)
+|..+++++.+.... +..++..++.+|...|++++|++.++++++..... +...|..++.++.+.|++
T Consensus 224 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 999999999984322 56889999999999999999999999998742111 367889999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 003829 760 YEAITFVNNLSKLD 773 (793)
Q Consensus 760 ~~A~~~~~~~~~~~ 773 (793)
++|..+++++++..
T Consensus 303 ~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 303 DLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=155.86 Aligned_cols=264 Identities=11% Similarity=-0.028 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 174 SVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY 253 (793)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 253 (793)
..+......+...|++++|..+|+.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34555666667777777777777777665443 66677777777777777777777777777664 33566777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 254 GKMGMPWNKIMALVEGMKSAGVKPDSYTFNTL--------------IS-CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 254 ~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
...| ++++|...++++.+.... +...+..+ .. .+...|++++|..+++++.+.. +.+...+.
T Consensus 100 ~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEH-NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTT-CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 7777 777777777777665332 12222222 11 2555666777777777766653 23556666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG 398 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 398 (793)
.+...|.+.|++++|.+.++++.+. .+.+..++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 6777777777777777777776654 23345566667777777777777777777766653 334556666666666677
Q ss_pred CHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 399 KDESAMKVFEEMRSAGCKP-----------NICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
++++|.+.++++.+..... +...+..+..++...|+.++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777766665542111 345566666666666666666666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-15 Score=161.08 Aligned_cols=383 Identities=11% Similarity=-0.025 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 003829 314 KVTYNALLDVYGKCRRPKEAMQVLREMKIN--------GCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG------ 379 (793)
Q Consensus 314 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 379 (793)
...|+.|...+...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344555555555566666665555554321 011123455566666666666666666655554320
Q ss_pred C-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 380 I-TPDVFTYTTLLSGFEKA--GKDESAMKVFEEMRSAGCKPNICTFNALIKM---HGNRGNFVEMMKVFDEINKCNCKPD 453 (793)
Q Consensus 380 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (793)
. .....++..+..++... +++++|+..|++..+.. +.+...+..+..+ +...++.++|++.+++..+.+ +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11233444444444332 34666666666665542 1233333333333 233455556666666655442 223
Q ss_pred HHHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 454 IVTWNTLLAVFG----QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNA 529 (793)
Q Consensus 454 ~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 529 (793)
...+..+...+. ..|++++|.+++++....... +...+..+...|...|++++|.+.++++.+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 444444443333 235566777777776665432 5666777777777777788887777777766444 5555655
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM 609 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 609 (793)
+...|...+... .... ...... .....+..+.|...++.+.. . .+.+..++..+
T Consensus 287 lg~~y~~~~~~~---------~~~~-~~~~~~------~~~~~~~~~~A~~~~~~a~~---------~-~~~~~~~~~~l 340 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-ENGMYG------KRKLLELIGHAVAHLKKADE---------A-NDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------C------HHHHHHHHHHHHHHHHHHHH---------H-CTTTCCCHHHH
T ss_pred HHHHHHHHHHHh---------hhHH-HHHHHH------HHHHHhhHHHHHHHHHHHhh---------c-CCchhhhhhhH
Confidence 555443211100 0000 000000 00111123455555544332 1 12334567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLT--TYNTLMY-MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
...+...|++++|...|++..+....+... .+..+.. .+...|++++|+..|++.++. .|+.....
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~--------- 409 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE--------- 409 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------
Confidence 888888888888888888888764322211 1223332 235678999999999999885 45533222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 687 GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
+..+.+.+++++.++.+.. +..+|..++.+|...|++++|++.|+++++.|
T Consensus 410 ~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2234455666776663222 55788999999999999999999999998754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-16 Score=153.28 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=141.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 003829 499 YSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQM 578 (793)
Q Consensus 499 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 578 (793)
....|++..|+..++................+..+|...|++++|...++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334555555555555443321111122333444555666666665554432 1233444555555555666666666
Q ss_pred HHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 579 LALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
++.+++++ ..+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|
T Consensus 85 ~~~l~~ll---------~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 85 VAELDREM---------SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHH---------HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH---------hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 65554332 2222 22344555555666666666666666655 34566666666666666667777
Q ss_pred HHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISY---NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
.+.++++.+. .|+.... ..++..+...|++++|..+|+++.+... .+...++.++.++.+.|++++|...++++
T Consensus 150 ~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654 2332111 1122223334667777777777666321 24566666666777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCHH
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 779 (793)
++.. +.+..++..++..+...|+.++ +.++++++++.+|+++.+
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 6532 2246666666666666666654 456666777776665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=148.40 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 281 TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 281 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
++..+...+...++.++|.+.++++...+..| +...+..+..++.+.|++++|++.+++ +.+...+..++..|
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 33333334444444444444444444333222 223333334444444444444444443 22334444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003829 360 ARDGLLEEAMELKTQMVEIGITPDVFTY---TTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (793)
Q Consensus 360 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (793)
.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|+++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence 44455555544444444432 221100 01112222234555555555555444 2334445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHc
Q 003829 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSE-VSGVFKEMKRA 483 (793)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 483 (793)
+|.+.|+++.... +.+..++..++..+...|+.++ +.++++++.+.
T Consensus 218 eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 218 AAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5555555544432 2234445555555555555543 34455555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=178.76 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003829 243 LITYNVILNVYGKMGMPWNKIMALVEGMKS---AGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNA 319 (793)
Q Consensus 243 ~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ 319 (793)
..|||++|++||+.| +.++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 127 ~~TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345555555555555 55555555555432 34555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003829 320 LLDVYGKCRRP-KEAMQVLREMKINGCLPSIVTYNSLISAY 359 (793)
Q Consensus 320 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 359 (793)
||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555555543 45555555555555555555555555433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-17 Score=174.57 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=149.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMND---SGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYN 677 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 677 (793)
.-..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||++|++.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 003829 678 TVIFAYCRNGRM-KEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------QNTYNSIV 750 (793)
Q Consensus 678 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~ 750 (793)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ .-++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999984 78999999999999999999999988665544 455555555 3345554 34455666
Q ss_pred HHHHccC---------CHHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHhhhc
Q 003829 751 DGYCKLN---------QRYEAITFVNNLSKL---------------DPHVTKELECKLSDRIAKKW 792 (793)
Q Consensus 751 ~~~~~~g---------~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~l~k~~ 792 (793)
+.|.+.+ ..++-...+++=+.+ .+......++..+..+.++|
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l~~~~~~w 345 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777655 234545555443321 13344566888888888888
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-14 Score=138.23 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC--
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-- 602 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-- 602 (793)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|+..+++++... .. ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~ 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-----RE--MRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH--TTCCHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----cc--cccchH
Confidence 445556666667777777777777766554 556666667777777777777777776654311 11 1122
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 603 --IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 603 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
..++..+...+...|++++|...|+++.+.. |+. ..+...|++++|...++++.... +.+...+..++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 146 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 4678889999999999999999999999863 553 34666788999999999999862 33467889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
..+...|++++|...++++++.... +..++..++.+|...|++++|+..++++++.. +.+...|..++.++.+.|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999984332 57889999999999999999999999999853 335888999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 003829 761 EAITFVNNLSKLD 773 (793)
Q Consensus 761 ~A~~~~~~~~~~~ 773 (793)
+|...++++++.+
T Consensus 225 ~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 225 SALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999998
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=154.03 Aligned_cols=378 Identities=12% Similarity=0.026 Sum_probs=185.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 320 LLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL---EEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
+...+.+.|++++|+++|++..+.| +..++..+...|...|+. ++|++.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555666666666666655543 223344444445555555 5555555555533 22333334333333
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 003829 397 AG-----KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDS 471 (793)
Q Consensus 397 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 471 (793)
.| +.++|...|++..+.|... .+..|...|...+..+++ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 32 4455555555555543221 333444444433322111 1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHH
Q 003829 472 EVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFD----QAMSIYKRMLEAGVTPDLSTYNAVLAALARGG---MWEQSE 544 (793)
Q Consensus 472 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 544 (793)
++.+.+......| +......+...|...+.++ .+..+++..... +...+..+...|...| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2333333333333 2234444444555444332 222333332222 2225555555666666 666666
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHcC----CCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcC
Q 003829 545 KIFAEMKGGRCKPNELTYSSLLHAYANG----REIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISI-Y--GRRQ 617 (793)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g 617 (793)
..|++..+.+ .++...+..+...|... +++++|+.+|++. . +-+...+..+... + ...+
T Consensus 200 ~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a---------a----~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 200 KQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI---------A----PGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---------G----GGSTHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH---------c----CCCHHHHHHHHHHHHhCCCCC
Confidence 6666666554 33444334455555433 5666666665532 1 2344455555554 3 3467
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-----NFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGR 688 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 688 (793)
++++|.+.|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..|...|.. ..+
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcC
Confidence 7777777777777765 5666666766666 44 7888888887776 32 55666666666655 337
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
+++|.++|++..+.|. ......|+.+|.. ..+.++|..++++..+.|. ++.......+......++.++|..
T Consensus 338 ~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~ 413 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQR 413 (452)
T ss_dssp HHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888877553 3345566666653 4567888888888877652 222222222222233446667777
Q ss_pred HHHHHhhC
Q 003829 765 FVNNLSKL 772 (793)
Q Consensus 765 ~~~~~~~~ 772 (793)
+.++..+.
T Consensus 414 ~~~~~~~~ 421 (452)
T 3e4b_A 414 LVQQELAA 421 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-14 Score=150.47 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=197.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP---KEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 361 (793)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5566778899999999999998876 344566677778888888 9999999998753 56677777775666
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 362 DG-----LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDE---SAMKVFEEMRSAGCKPNICTFNALIKMHGNRG 433 (793)
Q Consensus 362 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 433 (793)
.| +.++|++.|++..+.|.. + .+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 789999999999998743 2 5666777777665443 3445555554444 3445566667777666
Q ss_pred CHHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----
Q 003829 434 NFVEMM----KVFDEINKCNCKPDIVTWNTLLAVFGQNG---MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRC---- 502 (793)
Q Consensus 434 ~~~~A~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---- 502 (793)
.++++. .+++.... .+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCC
Confidence 443333 33333222 12235555555555555 555555555555555432 333333444444333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHH--HcCCCHHHHHH
Q 003829 503 GSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY--ANGREIDQMLA 580 (793)
Q Consensus 503 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~ 580 (793)
+++++|.++|++.. .| +...+..+...| + ...+++++|+.
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~----------------------------------~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLL----------------------------------YDFPELGDVEQMMK 272 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHH----------------------------------HHSGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHH----------------------------------HhCCCCCCHHHHHH
Confidence 34555555555444 21 223333333331 2 23445555555
Q ss_pred HHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c
Q 003829 581 LSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ-----MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----S 651 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 651 (793)
+|++.. +.| +...+..|...|. .| ++++|.+.|++.. . .+...+..|...|.. .
T Consensus 273 ~~~~Aa---------~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 273 YLDNGR---------AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp HHHHHH---------HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHH---------HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCC
Confidence 544332 111 3444445555444 33 6777777777666 3 356666666666655 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
.++++|...|++..+.| +......|...|.. ..+.++|..+|+...+.|.. +.......+......++..+|
T Consensus 336 ~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a 411 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEG 411 (452)
T ss_dssp CCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHH
Confidence 47888888888887765 33455566666653 35788888888888876542 222222222222223345666
Q ss_pred HHHHHHHH
Q 003829 728 LDVVRYMI 735 (793)
Q Consensus 728 ~~~~~~~~ 735 (793)
..+.++..
T Consensus 412 ~~~~~~~~ 419 (452)
T 3e4b_A 412 QRLVQQEL 419 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-13 Score=132.99 Aligned_cols=229 Identities=14% Similarity=0.029 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhHHHHHHHHHCC
Q 003829 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSERAFLELKKKG 598 (793)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (793)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..+++... .+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~---------~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD---------LN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------TT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH---------CC
Confidence 4445555666666666666676666666652 244555566666666 6777777776665432 12
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC
Q 003829 599 FSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK 670 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 670 (793)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 56677777777777 888888888888888764 77788888888888 889999999999998864
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCC
Q 003829 671 PDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+...+..+...|.. .+++++|.++|++..+.+ +...+..++.+|.. .+++++|++.++++.+.+ +
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 217 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 217 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C
Confidence 56677888888888 889999999999998853 46778888889988 899999999999998754 3
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCH
Q 003829 743 QNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 743 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
...+..++..|.+ .|++++|.++++++.+.+|++..
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 6778888888888 89999999999999999876433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-14 Score=139.54 Aligned_cols=241 Identities=16% Similarity=0.108 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
+......+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..+++++. ...........|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~ 77 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-------KVNATKAKSADF 77 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSCTTTCCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------ccCchhHHHHHH
Confidence 3445556666777777777777766542 22444666666677777777777777665432 001111123457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN 686 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 686 (793)
..++..+...|++++|...|++..+.. +.+..++..+...|...|++++|+..++++.+.. +.+...|..++..+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 777888888888888888888888764 5567788889999999999999999999988762 34567777777445556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHc
Q 003829 687 GRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQG-CKPN------QNTYNSIVDGYCK 755 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 755 (793)
+++++|.+.|+++++ ..|+ ...+..++.++...|+ +++|+..++++++.. -.|+ ...|..++..|.+
T Consensus 156 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 KEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 699999999999998 4444 6778888888888888 888999999987631 1133 2577889999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 756 LNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.|++++|..+++++++.+|+++..
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCccHHHH
Confidence 999999999999999999986553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-14 Score=134.43 Aligned_cols=198 Identities=14% Similarity=-0.008 Sum_probs=138.0
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 003829 557 PNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP 636 (793)
Q Consensus 557 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 636 (793)
++...+..+...+...|++++|+..+++++. --+.+...+..+...+.+.|++++|...+++..+.. |.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~ 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK----------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PR 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 3444555555666666666666666655432 113345666666677777777777777777777654 55
Q ss_pred CHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 637 SLTTYNTLMYMYSRS-----------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
+...+..+..++... |++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++..
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-- 148 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Confidence 666777777777777 99999999999999863 3357788889999999999999999999999866
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 706 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 706 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.+...+..++.+|...|++++|+..++++++. .| +...+..++.++.+.|++++|+..+++.-
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 57788899999999999999999999999885 44 57888899999999999999999888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-14 Score=131.97 Aligned_cols=208 Identities=19% Similarity=0.061 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..+...+...|++++|...|+.+++..+. +...+..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3456666677777777777777777777766544 667777777777777777777777777776642 25566666666
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
.+.+.+ . . ..+ .+...|++++|...+++..+.. +-+...+..+..+|...|+++
T Consensus 82 ~~~~~~-~------------~---~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALY-R------------Q---AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHH-H------------T---CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh-h------------h---hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 666650 0 0 000 0011145555555555555442 123444555555555555555
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEM 410 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 410 (793)
+|+..|++..+.. .+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555543 344555555555555555555555555555542 234445555555555555555555555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-13 Score=133.30 Aligned_cols=225 Identities=14% Similarity=0.058 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCK--PT----LITY 246 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~ 246 (793)
..++..+...+...|++++|...|+.+.+.. .+..++..++.++...|++++|+..|+++.+.... ++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666666777777777777777766655 35666777777777777777777777776654211 11 3556
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 247 NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (793)
Q Consensus 247 ~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 326 (793)
..+...+...| ++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~-~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLG-DLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-cHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 66666666666 6666666666665532 221 22333455555555555555442 1133344555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKV 406 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 406 (793)
.|++++|...|++..+.. +.+..+|..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555554431 2234455555555555555555555555555442 22344444445555555555555555
Q ss_pred HHHHHH
Q 003829 407 FEEMRS 412 (793)
Q Consensus 407 ~~~~~~ 412 (793)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=140.04 Aligned_cols=246 Identities=12% Similarity=0.100 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHHHHHHhHHHHHHHHHCCCCCCH
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE-IDQMLALSEEIYSERAFLELKKKGFSPDI 603 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (793)
..|..+...+.+.|++++|+..+++++... +-+..+|..+..++...|+ +++|+..+++++.. -+.+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----------~P~~~ 166 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------QPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------CTTCH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----------CCCCH
Confidence 455556666777777777777777776542 2355666777777777775 77777777765431 13356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 683 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 683 (793)
..|..+..++...|++++|+..|+++++.+ +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 778888888888888888888888888875 6678888888888888899999999999988863 33577888888888
Q ss_pred HH-cCCHHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003829 684 CR-NGRMKEA-----SRIFSEMRDSGLVP-DVITYNTFVASYAADS--LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 753 (793)
Q Consensus 684 ~~-~g~~~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 753 (793)
.. .|..++| +..|+++++ +.| +...|..++.++...| ++++|++.++++ + ..| +...+..++++|
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHH
Confidence 88 5665777 488888888 455 4578888888888877 588888888887 3 344 477788888888
Q ss_pred HccC--------C-HHHHHHHHHHH-hhCCCCCCHHHHHHHHHHHh
Q 003829 754 CKLN--------Q-RYEAITFVNNL-SKLDPHVTKELECKLSDRIA 789 (793)
Q Consensus 754 ~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~l~ 789 (793)
.+.| + +++|+++++++ .+.+|.. ...|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIR-KEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHH
Confidence 8874 2 58899999998 8888863 344555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-11 Score=129.98 Aligned_cols=480 Identities=10% Similarity=0.013 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---HEEAAGV 301 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~A~~~ 301 (793)
.+-+..|++.+..+ +-|..+|..++..+.+.+ ..+.+..+|+.+...- ......|...+..-.+.++ ++.+..+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34455556665554 347777777777777776 6777777777777653 2255566666666666666 7777777
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHc-CC-CCC-hhHHHHHHHHHH---------
Q 003829 302 FEEMKLAG-FSPDKVTYNALLDVYGKCRRP--------KEAMQVLREMKIN-GC-LPS-IVTYNSLISAYA--------- 360 (793)
Q Consensus 302 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~-~~~~~~li~~~~--------- 360 (793)
|++.+... .+|++..|..-+....+.++. +.+.++|+..+.. |. .++ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777652 125666666665554444443 2233555554432 43 333 345555554432
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003829 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMK 440 (793)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 440 (793)
..++++.+..+|++++......-..+|......-...+. ..+..++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 123345555566555532111111111111110000000 0011111110 112233333
Q ss_pred HHHHHHhC--CCC---CCH-HHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-------CHH
Q 003829 441 VFDEINKC--NCK---PDI-VTWNTLLAVFGQNG-MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG-------SFD 506 (793)
Q Consensus 441 ~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-------~~~ 506 (793)
.+.++... ++. |.. .+.. ....-..+ .......+ |...+..--..+ ..+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~ 326 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKA 326 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHH
T ss_pred HHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH---------------HHHHHHHHHhCCccccchhhHH
Confidence 33332110 100 000 0000 00000000 00011111 112221111111 123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003829 507 QAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE-KIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEI 585 (793)
Q Consensus 507 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 585 (793)
.+..+|++++..-.. ....|...+..+...|+.++|. .+++..... ++.+...|...+......|++++|..+|+.+
T Consensus 327 Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445666666665333 6777777777777777777775 888777653 2334555666666677778888888888776
Q ss_pred HhHH--HHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcc
Q 003829 586 YSER--AFLELKKKGFSP-----------DIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRS 651 (793)
Q Consensus 586 ~~~~--~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 651 (793)
+..- .+.... .+.+. ...+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 405 IDRIHLDLAALM-EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhh-hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 5410 000000 11111 1235777777777788888999999888875 2 22334444333333343
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 003829 652 -ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 652 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
++.+.|.++|+..++. ++.+...|..++......|+.+.|+.+|++++.....+ ....|..++..-.+.|+.+.+.
T Consensus 483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4588899999988876 44466677788887778888999999999888753322 2367778887778888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGY 753 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~ 753 (793)
++.+++.+. .|+......+++.|
T Consensus 562 ~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 562 TLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888888874 34433444444444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=132.51 Aligned_cols=209 Identities=11% Similarity=0.086 Sum_probs=163.4
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
....+..+...+...|++++|+..+++++. ..+.+...+..++..+...|++++|...++++.+.. +.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----------ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp --------------------CCTTHHHHHT----------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 455666777778888899999888876542 224467888899999999999999999999998874 567
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..++.+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 8889999999999999999999999999863 446788999999999999999999999999984322 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
+...|++++|+..++++++.. +.+..++..++.+|.+.|++++|...++++++.+|++....
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 999999999999999998853 34588899999999999999999999999999999865543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-12 Score=124.60 Aligned_cols=221 Identities=13% Similarity=-0.019 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK----MGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (793)
..++..+...+...|++++|+..|++..+.+ +..++..+...|.. .+ ++++|...|++..+.+ +...+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444444444445555555554444421 33344444444444 44 4444444444444432 333444
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 284 TLISCCRR----GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK----CRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 284 ~l~~~~~~----~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444444 444444444444444432 34444444444444 455555555555544432 33344444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 356 ISAYAR----DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIK 427 (793)
Q Consensus 356 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 427 (793)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 445555555555544432 23344444444444 445555555555444432 1334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 003829 428 MHGN----RGNFVEMMKVFDEINK 447 (793)
Q Consensus 428 ~~~~----~g~~~~A~~~~~~~~~ 447 (793)
+|.. .+++++|.+.|++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 4444 4444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-13 Score=130.40 Aligned_cols=207 Identities=11% Similarity=0.036 Sum_probs=175.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 003829 559 ELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL 638 (793)
Q Consensus 559 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 638 (793)
...+..+...+...|++++|+..+++++.. .+.+...+..++..+...|++++|.+.++++.+.. +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 455667777888888899888888776531 24467889999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
..+..++..|...|++++|+.+++++.+.+..| +...+..++.++...|++++|.++++++.+.... +...+..++.+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 184 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHH
Confidence 889999999999999999999999998832334 4678889999999999999999999999984322 57889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
|...|++++|...++++++.. +.+...+..++..+.+.|++++|..+++++.+..|++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999998742 345788889999999999999999999999999998654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-11 Score=129.84 Aligned_cols=448 Identities=9% Similarity=0.025 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---HHHHHHHH
Q 003829 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL---LEEAMELK 372 (793)
Q Consensus 296 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 372 (793)
.+....+++.+..+ +-|...|..++..+.+.++++.+..+|+.+... .+.....|...+..-.+.|+ ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444556655554 458899999999999999999999999999887 66677789999998888888 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------h
Q 003829 373 TQMVEIG-ITPDVFTYTTLLSGFEKAGKD--------ESAMKVFEEMRS-AGC-KP-NICTFNALIKMHG---------N 431 (793)
Q Consensus 373 ~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 431 (793)
++.+... ..|+...|...+....+.++. +...++|+..+. .|. .+ +...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998763 137888777777666655543 334577777554 455 44 4567877776543 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 003829 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (793)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 511 (793)
+++++.+.++|++++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34577888888888753211112333322211111010 001111111 01123334444
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHhcCCCCCCH
Q 003829 512 YKRMLEA--GVT---------------P-----D---LSTYNAVLAALARGG-------MWEQSEKIFAEMKGGRCKPNE 559 (793)
Q Consensus 512 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~ 559 (793)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++.+.. ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332211 110 1 1 234555554333322 123456778887764 34477
Q ss_pred hhHHHHHHHHHcCCCHHHHH-HHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 003829 560 LTYSSLLHAYANGREIDQML-ALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG----- 633 (793)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 633 (793)
..|...+..+...|+.++|. .+++..+. .++.+...+...+....+.|++++|.++|+.+.+..
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~----------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQ----------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHH----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH----------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888886 88876542 234567778888888899999999999999988641
Q ss_pred -----CCC-----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 003829 634 -----FTP-----------SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN-GRMKEASRIF 696 (793)
Q Consensus 634 -----~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~ 696 (793)
.+. ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 121 13468888888888999999999999999851112233444433333344 4599999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 697 SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 697 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
+..++. ..-+...+..++......|+.+.|..+|+++++....+ ....|...+..-.+.|+.+.+..+.+++.+..|
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999984 22255667788888888999999999999998753222 256788888888899999999999999999999
Q ss_pred CCCHH
Q 003829 775 HVTKE 779 (793)
Q Consensus 775 ~~~~~ 779 (793)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 97654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-13 Score=134.84 Aligned_cols=249 Identities=10% Similarity=0.027 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
...++..+..++...|++++|+..++.++...+. +..+|+.+..++...|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 4566777778888899999999999998887655 78889999999999997 99999999999987533 778889899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK-CRR 329 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~ 329 (793)
.++.+.| ++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g-~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLR-DPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcc-CHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 9998888 889999999988887655 67788888888888888888888888888874 3367788888888888 555
Q ss_pred hHHH-----HHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----
Q 003829 330 PKEA-----MQVLREMKINGCLPSIVTYNSLISAYARDG--LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAG---- 398 (793)
Q Consensus 330 ~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---- 398 (793)
.++| +..|++.+.. .+-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4777777765 2335667888887787777 578888888777 32 2445667777777777653
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 003829 399 -----KDESAMKVFEEM-RSAGCKPNICTFNALIKMH 429 (793)
Q Consensus 399 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 429 (793)
.+++|+++++++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888877 5442 22334455444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-13 Score=131.07 Aligned_cols=251 Identities=8% Similarity=0.038 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HhhHHHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPN--ELTYSSLLH 567 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 567 (793)
..+......+...|++++|...|+++.+.... +...+..+...+...|++++|...+++..+....++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34455666777778888888888887776443 455677777778888888888888888776321111 223677778
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 647 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 647 (793)
.+...|++++|+..+++++.. .+.+..++..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR----------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQA 151 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHH
Confidence 888888888888888766531 13355788888999999999999999999988874 5677788888834
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSG-LVPD------VITYNTFVAS 717 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~ 717 (793)
+...+++++|+..++++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..++..
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 444559999999999999863 3347788888889988888 888999999998731 1233 2578889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCK 755 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 755 (793)
|...|++++|++.++++++. .| +...+..+......
T Consensus 231 ~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC-----
T ss_pred HHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhhcc
Confidence 99999999999999999985 45 46666666554433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-13 Score=122.35 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+..+|..++..|...|++++|++.|++..+.. |.+..++..+..+|.+.|++++|+..++++.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999999875 6788999999999999999999999999999863 446778888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 761 (793)
.+...++++.|...++++.+.... +...+..++.+|...|++++|++.++++++.+ +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999984332 56889999999999999999999999999853 3358899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 003829 762 AITFVNNLSKLDPHV 776 (793)
Q Consensus 762 A~~~~~~~~~~~~~~ 776 (793)
|++.++++++.+|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999998864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=124.00 Aligned_cols=210 Identities=11% Similarity=-0.005 Sum_probs=175.6
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 637 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 637 (793)
+...+..+...+...|++++|+..+++++. . .+.+...+..++..+...|++++|.+.++++.+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--------S--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------h--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 455677778888888999999888876543 1 13457788999999999999999999999998864 567
Q ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRS-ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 715 (793)
Q Consensus 638 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 715 (793)
..++..++..+... |++++|...++++.+.+..|+ ...+..++.++...|++++|..+++++.+.... +...+..++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHH
Confidence 88899999999999 999999999999998322333 678899999999999999999999999984322 478899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.++...|++++|...++++++.....+...+..++..+...|+.++|..+++.+.+..|++...
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999885311457778888888899999999999999999998886543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-12 Score=124.73 Aligned_cols=201 Identities=12% Similarity=-0.048 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
..++..++..+...|++++|...|+.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456777777888888888888888888776443 67788888888888899999999888888764 2367778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAGVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
|...| ++++|.+.++++.+.+..| +...+..+...+...|++++|..+++++.+.. +.+...+..+...|.+.|+++
T Consensus 115 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQK-RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTT-CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHh-HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888 7888888888877633334 34566666677777788888888887777653 235666777777777777788
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+|...++++.+. .+.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 887777777664 2345556777777777777777777777777765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=134.37 Aligned_cols=224 Identities=12% Similarity=-0.029 Sum_probs=102.4
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 145 FHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY 224 (793)
Q Consensus 145 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (793)
..|+++.|+..|+.+.+. .....+.+..++..++.++...|++++|...|+.+.+..+. +..++..++.++...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhc--ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 455566666666665551 11111224445555555555555666665555555554332 455555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003829 225 REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEE 304 (793)
Q Consensus 225 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 304 (793)
++|+..|+++.+.. +.+..++..+...|.+.| ++++|...++++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555555542 123445555555555555 5555555555555432 2222222222233334455555555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 305 MKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL---PSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 305 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
..... +++...+ .++..+...++.++|...+++....... .+..++..+...|.+.|++++|.+.|+++.+
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44331 1122222 2333444444444444444444221100 0023344444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-13 Score=131.01 Aligned_cols=247 Identities=8% Similarity=-0.040 Sum_probs=127.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHH
Q 003829 501 RCGSFDQAMSIYKRMLEAGVT---PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (793)
Q Consensus 501 ~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 577 (793)
..|++++|.+.++++.+.... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 445666777777766665321 124455566666666666666666666666542 2345566666666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 578 MLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARA 657 (793)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 657 (793)
|+..+++++.. .+.+..++..++..+...|++++|...++++.+.. |+.......+..+...|++++|
T Consensus 96 A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 96 AYEAFDSVLEL----------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHHHHHHHHH----------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhc----------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHH
Confidence 66666554320 12234555666666666666666666666665542 2222222233333445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 658 EDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
...+++..... +++...+ .++..+...++.++|...++++.+..... +..++..++.+|...|++++|+..++++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555431 2232222 24444555555566666665555421110 1245555666666666666666666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003829 735 IKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 766 (793)
Q Consensus 735 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 766 (793)
++. .|+. +.....++...|++++|++.+
T Consensus 242 l~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 542 2321 112233455555666555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=145.63 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=190.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCCHhhHH
Q 003829 493 NTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGG----RC-KPNELTYS 563 (793)
Q Consensus 493 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 563 (793)
..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++.... +. .....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555556666666666655554322 22 34555555566666666666666555431 11 11334566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQM-----------------VAKTNEI 625 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 625 (793)
.+...|...|++++|...+++++.. ....+- .....++..+...|...|+ +++|.+.
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTL-----ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-----HHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 6667777778888887777766541 111111 1124577888889999999 9999999
Q ss_pred HHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 626 LHFMNDS----GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 626 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+++..+. +. +....++..+...|...|++++|+..+++..+.... .+ ...+..++.+|...|++++|..+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8887642 11 112346788889999999999999999998864100 11 23788899999999999999999
Q ss_pred HHHHHHCCCC-C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 003829 696 FSEMRDSGLV-P----DVITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 696 ~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++++++.... . ...++..++.+|...|++++|+..++++++. +..+ ...++..++.+|.+.|++++|..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999862110 1 1467889999999999999999999998752 1111 145788899999999999999999
Q ss_pred HHHHhhCCCCC
Q 003829 766 VNNLSKLDPHV 776 (793)
Q Consensus 766 ~~~~~~~~~~~ 776 (793)
++++++.....
T Consensus 366 ~~~al~~~~~~ 376 (411)
T 4a1s_A 366 AEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHHHHhhc
Confidence 99999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-12 Score=119.74 Aligned_cols=202 Identities=10% Similarity=-0.059 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..++..+...|++++|...++.+.+..+. +..++..++.++...|++++|..+|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4455556666666666666666666666554332 45566666666666666666666666665543 224455555555
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 252 VYGKM-GMPWNKIMALVEGMKSAGVKPD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 ~~~~~-g~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 329 (793)
.+... | ++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+
T Consensus 85 ~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLN-RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTC-CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 55555 5 55666666555555222222 3344444445555555555555555554432 1234444455555555555
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 330 PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
+++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555544432112334444444444555555555555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=126.64 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
...++..+...+...|++++|...|+.+.+..+. +..++..++.++...|++++|+..|+++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4455666666777777888888888777765443 67777777778888888888888888777664 235667777777
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003829 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (793)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 331 (793)
.+...| ++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKE-MYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhc-cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 777777 777777777777665432 45566666666777777777777777766653 235556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
+|...++++.+. .+.+..++..+...|...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777776654 2234556666667777777777777777776665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=141.16 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=185.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhh
Q 003829 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RCKP-NELT 561 (793)
Q Consensus 491 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 561 (793)
.+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..+ ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444444555555555555555555544222 2 234445555555556666666555554321 1111 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------------------HH
Q 003829 562 YSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SPDIPTLNAMISIYGRRQM--------------------VA 620 (793)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~ 620 (793)
+..+...+...|++++|+..+++.+.. ....+. .....++..+...|...|+ ++
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDI-----SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 555666677777777777777765431 111111 1114467788888888999 99
Q ss_pred HHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHH
Q 003829 621 KTNEILHFMNDS----GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD----IISYNTVIFAYCRNGRMK 690 (793)
Q Consensus 621 ~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 690 (793)
+|...+++..+. +. +....++..+...|...|++++|+..+++..+... .++ ..++..++.+|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877642 11 11234678888999999999999999999885310 112 347888999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHH
Q 003829 691 EASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 691 ~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 760 (793)
+|..+++++.+. +..+. ..++..++..|...|++++|+..++++++. +..+. ..++..++.+|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999862 11111 467889999999999999999999998753 11111 567889999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 003829 761 EAITFVNNLSKLDPH 775 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~ 775 (793)
+|..+++++++..+.
T Consensus 325 ~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 QAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-13 Score=137.13 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=179.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhhHHHHH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RCKP-NELTYSSLL 566 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~ 566 (793)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... +..+ ...++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444455555555555555443222 2 234444455555555555555555544321 1011 233455566
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 003829 567 HAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM--------------------VAKTNEI 625 (793)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--------------------~~~A~~~ 625 (793)
..+...|++++|...+++.+.. ....+..+ ...++..+...+...|+ +++|...
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDI-----SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH-----HHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 6677777777777777665431 11111111 13467778888888888 9999988
Q ss_pred HHHHHhC----C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 003829 626 LHFMNDS----G-FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD----IISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 626 ~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
+++..+. + .+....++..+...+...|++++|...+++..+... ..+ ..++..++..+...|++++|.++
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 1 111234678888899999999999999999875310 011 34788889999999999999999
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 003829 696 FSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 696 ~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
++++.+... ..+ ..++..++.+|...|++++|...++++++. +..+. ..++..++..|.+.|++++|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 999886211 112 467888999999999999999999998752 11111 45778899999999999999999
Q ss_pred HHHHhhCCCC
Q 003829 766 VNNLSKLDPH 775 (793)
Q Consensus 766 ~~~~~~~~~~ 775 (793)
++++++..++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=140.30 Aligned_cols=231 Identities=12% Similarity=-0.011 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CC----CHhhHHHHHHHHHcCCC--------------------HHHHHH
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGRE--------------------IDQMLA 580 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~--------------------~~~a~~ 580 (793)
++..+...+...|++++|...+++..+... .. ...++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555554432100 00 12345556666666666 777777
Q ss_pred HHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCH
Q 003829 581 LSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENF 654 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 654 (793)
.+++.+. .....+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 169 ~~~~al~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 169 FYEENLS-----LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHH-----HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-----HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 7766543 112222111 234788888999999999999999998875310 112 23678889999999999
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~ 724 (793)
++|...+++....... .+ ..++..++..|...|++++|..+++++.+... ..+ ..++..++.+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998753100 11 46788899999999999999999999986211 112 46788999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHH
Q 003829 725 VEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 725 ~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 761 (793)
++|++.++++++. +..+. ..++..++..+...|+...
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999998752 21222 5677888888888887633
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=138.69 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDV----YAYTSLITTYASNGRYREAVMVFKKMEEE----GC-KPTLIT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~ 245 (793)
.+..+...+...|++++|...|+.+++.+.. +. .++..++.+|...|++++|+..|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445556666777777777777777665433 33 46677777777777777777777776543 10 112345
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSAG-----VKPDSYTFNTLISCCRRGSL-----------------HEEAAGVFE 303 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~ 303 (793)
+..+...|...| ++++|...+++..+.. ......++..+...|...|+ +++|...++
T Consensus 129 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 666666666666 6777777666654421 00112345555555556666 666666655
Q ss_pred HHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 304 EMKLA----GFS-PDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PS----IVTYNSLISAYARDGLLEEAMELKT 373 (793)
Q Consensus 304 ~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~ 373 (793)
+..+. +.. ....++..+...|...|++++|+..+++..+.... .+ ..++..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54332 111 11235555666666666666666666665432100 01 1245556666666666666666666
Q ss_pred HHHHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 374 QMVEIGIT-P----DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGC-----KPNICTFNALIKMHGNRGNFVEMMKVFD 443 (793)
Q Consensus 374 ~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 443 (793)
+..+.... . ...++..+...+...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55443100 0 123444555555555666666555555443200 0012234444445555555555555554
Q ss_pred HHH
Q 003829 444 EIN 446 (793)
Q Consensus 444 ~~~ 446 (793)
+..
T Consensus 368 ~al 370 (411)
T 4a1s_A 368 QHL 370 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-11 Score=119.25 Aligned_cols=224 Identities=8% Similarity=-0.007 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-------cCCCH-------HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHH
Q 003829 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYA-------NGREI-------DQMLALSEEIYSERAFLELKKKGFSPDIPTL 606 (793)
Q Consensus 541 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (793)
++|..+|++..... +.+...|..++..+. ..|++ ++|...+++.+. .-.+.+...|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~---------~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS---------TLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT---------TTTTTCHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH---------HhCcccHHHH
Confidence 57777777777642 335666766666554 35775 888888876542 1123356789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGFTPSLT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC- 684 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~- 684 (793)
..++..+.+.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|+++++.. +.+...|...+....
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999863 33444 89999999999999999999999999863 334555554444332
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP--NQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~ 760 (793)
..|++++|.++|+++++. .| +...|..++..+.+.|++++|..+|+++++.. +.| ....|..++..+.+.|+.+
T Consensus 181 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp TSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 369999999999999984 34 56889999999999999999999999999863 355 3678999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCH
Q 003829 761 EAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~~~ 778 (793)
+|..+++++++..|++..
T Consensus 259 ~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 259 SILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHcccccc
Confidence 999999999999998543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=131.05 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDID----VYAYTSLITTYASNGRYREAVMVFKKMEEE----GCKP-TLIT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 245 (793)
.+......+...|++++|...|+.+.+.... + ..++..++..+...|++++|+..|++..+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455566677778888888888877665433 3 356677777777888888888877776542 1111 2345
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHHH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSAGVK-PD----SYTFNTLISCCRRGSL--------------------HEEAAG 300 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 300 (793)
+..+...+...| ++++|...+++..+.... .+ ..++..+...+...|+ +++|..
T Consensus 86 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566666666666 667776666665442110 11 2244445555555555 555555
Q ss_pred HHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 003829 301 VFEEMKLA----GFS-PDKVTYNALLDVYGKCRRPKEAMQVLREMKING----CLP-SIVTYNSLISAYARDGLLEEAME 370 (793)
Q Consensus 301 ~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~ 370 (793)
.+++.... +.. .....+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544321 100 012244445555555555555555555543220 000 01144444555555555555555
Q ss_pred HHHHHH
Q 003829 371 LKTQMV 376 (793)
Q Consensus 371 ~~~~m~ 376 (793)
.+++..
T Consensus 245 ~~~~al 250 (338)
T 3ro2_A 245 YYKKTL 250 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-12 Score=129.61 Aligned_cols=236 Identities=7% Similarity=0.008 Sum_probs=176.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-C-CC
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGG----RCKP-NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-S-PD 602 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-~~ 602 (793)
....+...|++++|...+++.... +..+ ...++..+...|...|++++|+..+++.+. .....+. . ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~ 183 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----IYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTCSTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHhCccchHHH
Confidence 445567788888888888888653 1111 235677788888889999999998887654 1112111 1 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GI-KPD 672 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~ 672 (793)
..++..++..|...|++++|...+++..+... ..+ ..++..+..+|...|++++|+..+++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 45788899999999999999999998875310 112 246888999999999999999999999872 22 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~ 744 (793)
..++..++.+|...|++++|.++++++.+... .|. ...+..+...|...|+ +++|+.++++. +..++ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 67889999999999999999999999987210 121 2346778888999999 77788877775 23333 56
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 773 (793)
.+..++..|.+.|++++|..+++++++..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=133.78 Aligned_cols=213 Identities=8% Similarity=-0.042 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI-DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM 618 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 618 (793)
++++...+++..... +.+...+..+..++...|++ ++|+..+++++.. .+.+...+..+...|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------EPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCC
Confidence 455566666655432 33666777777777778888 8888877765531 13356788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN--- 686 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 686 (793)
+++|...|++..+.. |+...+..+..+|... |++++|+..++++++.. +.+...|..++.+|...
T Consensus 153 ~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 999999998888764 6678888888888888 99999999999998863 34578888899999888
Q ss_pred -----CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 687 -----GRMKEASRIFSEMRDSGLVP----DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 687 -----g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
|++++|.+.|+++++ ..| +...|..++.+|...|++++|++.++++++.. +.+...+..+..++...|
T Consensus 230 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 889999999999998 444 67888999999999999999999999998752 224778888899999999
Q ss_pred CHHHHHHHHHHH
Q 003829 758 QRYEAITFVNNL 769 (793)
Q Consensus 758 ~~~~A~~~~~~~ 769 (793)
++++|++.+.++
T Consensus 307 ~~~eAi~~~~~~ 318 (474)
T 4abn_A 307 RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHhccc
Confidence 999888765443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=130.86 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcC-------CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHC
Q 003829 525 STYNAVLAALARGGMWEQSEKIFAEMKGG-------RCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKK 597 (793)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 597 (793)
.++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...+++++.. +......
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 105 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--REKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHhCC
Confidence 44555555566666666666666655541 11223445666666777777777777777765531 1111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 003829 598 GFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAK--- 667 (793)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 667 (793)
..+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223567888999999999999999999998864 11 223456788899999999999999999999864
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003829 668 ---GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-------ITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 668 ---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+..|+ ..++..++.+|...|++++|.++++++.+. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 457888999999999999999999999862 111111 223344445556667777788
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 730 VVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 730 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.++...... +.+..++..++.+|.+.|++++|..+++++++..|+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888876531 224778899999999999999999999999987664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-10 Score=114.53 Aligned_cols=218 Identities=10% Similarity=0.012 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 003829 190 SVAASLLHGLHKDGFDIDVYAYTSLITTYAS-------NGRY-------REAVMVFKKMEE-EGCKPTLITYNVILNVYG 254 (793)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~ 254 (793)
++|...|++++...+. +..+|..++..+.. .|++ ++|+.+|++..+ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 5677777777665333 67777777776653 3664 677777777776 22 224556777777777
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGVKPDSY-TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYG-KCRRPKE 332 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~ 332 (793)
+.| ++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|...+.... ..|++++
T Consensus 111 ~~~-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRM-KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTT-CHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcC-CHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 777 677777777777664322 222 56666666666667777777776666553 123333333322221 2466666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-ITP--DVFTYTTLLSGFEKAGKDESAMKVFEE 409 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 409 (793)
|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666554 22245566666666666666666666666666542 233 344555555555566666666666666
Q ss_pred HHHC
Q 003829 410 MRSA 413 (793)
Q Consensus 410 ~~~~ 413 (793)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=112.68 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777888999999999999999998764 5678889999999999999999999999999863 4467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 762 (793)
+...|++++|.++++++.+... .+...+..++.++...|++++|++.++++++.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998432 256888999999999999999999999999863 34588899999999999999999
Q ss_pred HHHHHHHhhCCCCCCH
Q 003829 763 ITFVNNLSKLDPHVTK 778 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~ 778 (793)
..+++++++..|+++.
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-11 Score=108.15 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
+..+|..++.+|...|++++|+..|++..+..+ -+..+|..+...|.+.| ++++|+..++........ +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 455666666666666666666666666666542 25556666666666666 666666666666554333 444555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
..+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCHH
Confidence 55666666666666666666552 234556666666666777777777777666654 2235556666666777777777
Q ss_pred HHHHHHHHHHHc
Q 003829 367 EAMELKTQMVEI 378 (793)
Q Consensus 367 ~A~~~~~~m~~~ 378 (793)
+|++.|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777666654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=130.18 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRY-REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALV 267 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~ 267 (793)
++++...++....... .+...+..+..++...|++ ++|+..|++..+.. +.+..+|..+...|.+.| ++++|++.|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g-~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG-DVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 4445555554443322 2555555666666666666 66666666655543 124555666666666666 566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCh
Q 003829 268 EGMKSAGVKPDSYTFNTLISCCRRG---------SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC--------RRP 330 (793)
Q Consensus 268 ~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~ 330 (793)
++..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 6655543 3445555555555555 66666666666666653 22455666666666666 667
Q ss_pred HHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003829 331 KEAMQVLREMKINGCL--PSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 408 (793)
++|+..|++..+.... .+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776654210 255566667777777777777777777766653 3345556666666666677777666554
Q ss_pred HH
Q 003829 409 EM 410 (793)
Q Consensus 409 ~~ 410 (793)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-11 Score=122.58 Aligned_cols=234 Identities=8% Similarity=0.013 Sum_probs=127.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CC----CCHHHHH
Q 003829 425 LIKMHGNRGNFVEMMKVFDEINKC----NCKP-DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG--FI----PERDTFN 493 (793)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~----~~~~~~~ 493 (793)
....+...|++++|.+.+++.... +..+ ...++..+...|...|++++|...+.+..+.. .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334444555555555555555432 1001 12445555556666666666666665554421 10 0124667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCCHhhHH
Q 003829 494 TLISAYSRCGSFDQAMSIYKRMLEAGVT-PD----LSTYNAVLAALARGGMWEQSEKIFAEMKGG----RC-KPNELTYS 563 (793)
Q Consensus 494 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 563 (793)
.+...|...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888888777643110 11 236777788888888999888888887651 22 22455677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHH
Q 003829 564 SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM---VAKTNEILHFMNDSGFTPSLTT 640 (793)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 640 (793)
.+...+...|++++|...+++.+.. ....+.+.....+..+...+...|+ +++|+.++++... .+.....
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~ 341 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAY-----SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDF 341 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHH
Confidence 8888888999999999888776531 1111111111223444455555555 4444444443310 0111223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREIL 665 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~ 665 (793)
+..+...|...|++++|...+++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555555555555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-12 Score=138.14 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...|+.+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|+++++.. +-+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999999875 6678899999999999999999999999999863 335789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQR 759 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 759 (793)
+|...|++++|++.|+++++ +.| +...|..++.+|...|++++|++.|+++++. .|+ ...+..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999 555 4689999999999999999999999999984 565 88999999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 003829 760 YEAITFVNNLSKLDP 774 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~ 774 (793)
++|.+.++++++..|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-11 Score=114.58 Aligned_cols=173 Identities=13% Similarity=0.019 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
.+...+...+..+...|++++|...|++..+...+++...+..+..++...|++++|+..+++.++.. +.+...|..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999987633788888889999999999999999999999863 33577899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DV-------ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSI 749 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 749 (793)
.+|...|++++|...++++++ ..| +. ..|..++..+...|++++|++.++++++. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998 444 34 45888999999999999999999999874 554 5778889
Q ss_pred HHHHHccCCH---------------------------HHHHHHHHHHhhCCCCCCH
Q 003829 750 VDGYCKLNQR---------------------------YEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 750 ~~~~~~~g~~---------------------------~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+|...|+. ++|+..++++++.+|++..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 9999988888 9999999999999998654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-10 Score=118.57 Aligned_cols=234 Identities=11% Similarity=-0.018 Sum_probs=174.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCC-CC----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC-CC-C
Q 003829 530 VLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGF-SP-D 602 (793)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~-~ 602 (793)
....+...|++++|...|++...... .+ ...++..+...|...|+++.|+..+++.+. .....+. .+ .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~ 181 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-----IYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTSTTCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----HHHhCCCchhhH
Confidence 34456778999999999988875311 12 234677788888899999999999887654 1112111 11 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFT-PSLTTYNTLMYMYSRSENFARAEDVLREILA-----KGIKPD 672 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 672 (793)
..+++.++..|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|+..+++... .. +..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhH
Confidence 457888999999999999999999988763 111 1234678899999999999999999999987 42 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~ 744 (793)
..++..++.+|.+.|++++|..++++..+... .+. ...+..+...|...|+ +++|+.++++. +..++ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 67888999999999999999999999997311 222 2456777777878888 77888877763 23333 55
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.+..++..|.+.|++++|..+++++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999999865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-11 Score=118.01 Aligned_cols=244 Identities=17% Similarity=0.130 Sum_probs=159.1
Q ss_pred CccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 003829 168 NLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD-------GFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEE--- 237 (793)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 237 (793)
..+....++..+...+...|++++|..+++.+.+. .......++..+..+|...|++++|+..|+++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33446677788888888888888888888877652 22334567888888888888888888888888754
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 238 ---GCKP-TLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVKP-DSYTFNTLISCCRRGSLHEEAAGVFEEMK 306 (793)
Q Consensus 238 ---~~~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 306 (793)
+-.| ...++..+...|...| ++++|...++++.+. +..| ...++..+...+...|++++|..+++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2122 3457778888888888 888888888887764 2222 24467777778888899999998888887
Q ss_pred HC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCh-hH------HHHHHHHHHhcCCH
Q 003829 307 LA------GFSP-DKVTYNALLDVYGKCRRPKEAMQVLREMKIN-------GCLPSI-VT------YNSLISAYARDGLL 365 (793)
Q Consensus 307 ~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~------~~~li~~~~~~g~~ 365 (793)
.. +..| ...++..+..+|.+.|++++|.+.++++.+. ...+.. .. +..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 2122 3456778888888999999999998887652 111111 11 22223333344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
.+|...++...... +.+..++..+...|.+.|++++|.+.+++..+.
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55666666655432 334567888888899999999999999887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-10 Score=113.90 Aligned_cols=273 Identities=9% Similarity=-0.014 Sum_probs=183.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCC----HhhHHHHHH
Q 003829 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLS----TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLH 567 (793)
Q Consensus 497 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~ 567 (793)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655543222221 344455566667777777777766543210 111 123455666
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFS--P-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT----PSLTT 640 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 640 (793)
.+...|++++|...+++.+. .....+.. | ....+..+...+...|++++|...+++..+.... ....+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQ-----LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-----HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 77788899999888887654 22233332 2 2346677888999999999999999998764211 12456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYN-----TVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITY 711 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 711 (793)
+..+...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..++++..+....+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888899999999999999999875411111 11222 23345779999999999999987643221 12356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
..++..+...|++++|...++++.+. |..++ ...+..++.++...|+.++|...++++++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78889999999999999999998642 21222 23677788889999999999999999887643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-09 Score=112.68 Aligned_cols=271 Identities=11% Similarity=-0.028 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HH
Q 003829 175 VIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVY----AYTSLITTYASNGRYREAVMVFKKMEEEGC-KPTL----IT 245 (793)
Q Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~ 245 (793)
+.......+...|++++|...++.........+.. +++.+...+...|++++|...+++..+... ..+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44455566667888888888888877654333332 466677778888888888888888765311 1121 23
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC----CCH
Q 003829 246 YNVILNVYGKMGMPWNKIMALVEGMKSA----GVK--PD-SYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS----PDK 314 (793)
Q Consensus 246 ~~~ll~~~~~~g~~~~~a~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~----~~~ 314 (793)
+..+...+...| ++++|...+++..+. +.. |. ...+..+...+...|++++|..++++....... ...
T Consensus 96 ~~~la~~~~~~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQG-FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 455666666677 677777777766542 111 11 223444555566666666666666665543211 012
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHH
Q 003829 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSI-VTYN-----SLISAYARDGLLEEAMELKTQMVEIGITP---DVF 385 (793)
Q Consensus 315 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~ 385 (793)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 34555566666666666666666665432111110 1111 12233556666666666665554332111 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 386 TYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPNI-CTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 386 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
.+..+...+...|++++|...+++.... |...+. .++..+...+...|+.++|...+++..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455555566666666655554321 111111 133444444555555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=119.20 Aligned_cols=201 Identities=13% Similarity=0.162 Sum_probs=155.6
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------G-FTPSLTTYN 642 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~ 642 (793)
...|++++|+.++++.+. .+........+....++..+...|...|++++|...++++.+. + .+....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALE--DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHH--HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 456777888888877654 2222222222334668889999999999999999999998864 1 123455788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-H
Q 003829 643 TLMYMYSRSENFARAEDVLREILAK------GI-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS------GLVPD-V 708 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~ 708 (793)
.+..+|...|++++|+..++++... .- +....++..++.+|...|++++|..+++++++. +..|+ .
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8999999999999999999999864 11 223567889999999999999999999999873 11332 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------------------------------------------CCC
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQG-----------------------------------------------CKP 741 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------------~~p 741 (793)
.++..++.+|...|++++|+.+++++++.. ..|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678999999999999999999999988630 112
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 742 N-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 742 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+ ..++..++.+|.+.|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 557888999999999999999999999875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-10 Score=114.35 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=93.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C---CC-ChhHHHHHH
Q 003829 288 CCRRGSLHEEAAGVFEEMKLAGF-SP----DKVTYNALLDVYGKCRRPKEAMQVLREMKING--C---LP-SIVTYNSLI 356 (793)
Q Consensus 288 ~~~~~~~~~~A~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~~li 356 (793)
.+...|++++|...|++..+... .+ ...++..+...|...|++++|...+++..+.. . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 45567777777777777765310 01 23456667777777777777777777665421 0 11 133566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 003829 357 SAYARDGLLEEAMELKTQMVEI----GITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRS-----AGCKPNICTFNALI 426 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 426 (793)
..|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 7777777777777777766542 1000 123455566666666777777766666654 22 22245556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 003829 427 KMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 427 ~~~~~~g~~~~A~~~~~~~~~ 447 (793)
..|.+.|++++|.+.+++...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-10 Score=112.73 Aligned_cols=202 Identities=15% Similarity=0.022 Sum_probs=135.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHH
Q 003829 568 AYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-PS----LTTY 641 (793)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 641 (793)
.|...|++++|+..+++.+.. ....+..+. ..+|+.+..+|...|++++|+..+++..+.... .+ ..++
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADY-----QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555556555555554321 111221111 346667777777777777777777776643100 11 3467
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------H
Q 003829 642 NTLMYMYSRS-ENFARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------I 709 (793)
Q Consensus 642 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~ 709 (793)
+.+..+|... |++++|+..|++.++..... + ..++..++..|...|++++|..+|+++.+....... .
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7888889886 99999999999988641100 1 356888899999999999999999999984332211 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--ccCCHHHHHHHHHHHhhCCCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ------NTYNSIVDGYC--KLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
.|..++.++...|++++|+..+++.++ +.|+. ..+..++.++. ..+++++|+..++++.+.+|..
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 577888899999999999999999876 34431 13445566664 5578999999999998888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-10 Score=122.81 Aligned_cols=167 Identities=12% Similarity=0.043 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 171 LRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
.+..++..+..++.+.|++++|++.|+++++..+. +..++..+..+|.+.|++++|+..|++..+..+ -+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 36677888888888888888888888888776554 677888888888888888888888888887642 2677888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 330 (793)
.+|.+.| ++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+|...|++
T Consensus 85 ~~l~~~g-~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQ-DVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 8888888 788888888888776543 56778888888888888888888888887763 22566777888888888888
Q ss_pred HHHHHHHHHHHH
Q 003829 331 KEAMQVLREMKI 342 (793)
Q Consensus 331 ~~A~~~~~~~~~ 342 (793)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-09 Score=98.59 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 173 GSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNV 252 (793)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 252 (793)
...+..+...+...|++++|...++.+.+..+. +..++..++.++...|++++|...|+++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345556666667777777777777776655333 56667777777777777777777777776653 2355566666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003829 253 YGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332 (793)
Q Consensus 253 ~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 332 (793)
+...| ++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++
T Consensus 86 ~~~~~-~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQ-KYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc-CHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666 666666666666554322 34445555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHH
Q 003829 333 AMQVLREMKI 342 (793)
Q Consensus 333 A~~~~~~~~~ 342 (793)
|...+++..+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-10 Score=105.86 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHccCCHHHHHHHHHHHHHCC
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNT----------------LMYMYSRSENFARAEDVLREILAKG 668 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~ 668 (793)
.+...+..+...|++++|...|++..+.. +.+...|.. +..+|.+.|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566788999999999999998864 345566767 8999999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHH
Q 003829 669 IKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL--FVEALDVVRYMIKQGCKPNQNT 745 (793)
Q Consensus 669 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 745 (793)
+.+...|..++.+|...|++++|...|+++++ +.| +..++..++.+|...|+ .+.+...+++... ..|....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 34688999999999999999999999999999 555 56889999999877664 4455666666542 2233344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..++.++...|++++|+..++++++..|++..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 556677788899999999999999999997543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-09 Score=104.85 Aligned_cols=175 Identities=10% Similarity=0.085 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-C-CCHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRSENFARAEDVLREILAKGI-K-PDII 674 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~ 674 (793)
+.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++++... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456778888889999999999999999999864 334 67888899999999999999999999998621 1 1245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHH
Q 003829 675 SYNTVIFAYCR--------NGRMKEASRIFSEMRDSGLVPDV-ITY-----------------NTFVASYAADSLFVEAL 728 (793)
Q Consensus 675 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~ 728 (793)
.+..++.++.. .|++++|...|+++++. .|+. ... ..++.+|...|++++|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 77888889998 99999999999999983 3432 222 56788999999999999
Q ss_pred HHHHHHHHcCCCCC----HHHHHHHHHHHHcc----------CCHHHHHHHHHHHhhCCCCCCHH
Q 003829 729 DVVRYMIKQGCKPN----QNTYNSIVDGYCKL----------NQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 729 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
..++++++.. |+ ...+..++.+|... |++++|+..++++++..|+++..
T Consensus 169 ~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 169 VTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 9999999752 33 45788888888876 89999999999999999998754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=93.21 Aligned_cols=133 Identities=15% Similarity=0.250 Sum_probs=109.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.+.. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 46677788888889999999999888763 345777888888888999999999999998874322 5677888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
..|++++|++.++++++.. +.+...+..++..+.+.|++++|...++++++.+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999988753 335778888999999999999999999999988875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-09 Score=99.92 Aligned_cols=192 Identities=8% Similarity=-0.013 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003829 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC 288 (793)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 288 (793)
..+..++..+...|++++|+..|++..+....++...+..+...+...| ++++|+..+++..+.... +..++..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 4444444444444444444444444444432234444444444444444 444444444444443222 23344444444
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDK-------VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS---IVTYNSLISA 358 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 358 (793)
+...|++++|...+++..+.. +.+. ..|..+...+.+.|++++|++.|++..+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 444555555555555444431 1122 23444555555556666666666555442 222 2344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 44332 22233333332 11222232222 22234456666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=108.19 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=129.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--HHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDS----GFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGI---KPD--IISYNTV 679 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l 679 (793)
+..|...|++++|.+.|.+..+. |-+++ ..+|+.+..+|...|++++|+..+++.++... .+. ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44577889999999999888753 31111 46788999999999999999999999886411 111 3578899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCCC---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HH
Q 003829 680 IFAYCRN-GRMKEASRIFSEMRDSGLVP---D----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ------NT 745 (793)
Q Consensus 680 ~~~~~~~-g~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~ 745 (793)
+.+|... |++++|...|+++++ +.| + ..++..++..|...|++++|+..++++++....... ..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 9999996 999999999999987 222 1 356889999999999999999999999985322111 25
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|..++.++...|++++|+..++++++.+|+....
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 7788889999999999999999999999876543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-08 Score=96.82 Aligned_cols=175 Identities=10% Similarity=-0.035 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----CH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-----DI 673 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~ 673 (793)
.++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 45556666888888889999999999998876652 246777888899999999999999999999875 55 24
Q ss_pred HHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC---CC
Q 003829 674 ISYNTVIFA--YCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ-----GC---KP 741 (793)
Q Consensus 674 ~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~p 741 (793)
.+...++.+ ....| ++++|..+|+++.+ ..|+......+..++.+.|++++|.+.++.+.+. +. .|
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 455555544 44445 89999999999877 4455333344444888999999999999977642 11 24
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 742 -NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 742 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
|+.+...++......|+ +|.++++++.+..|+.+.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 47777566666666787 89999999999999977653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=107.09 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhccCC--CCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHH
Q 003829 147 KKTDLALDVFEWFRSCCSK--DGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD------G-FDIDVYAYTSLITT 217 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~ 217 (793)
|+++.|+..|+........ ....+....++..+..++...|++++|...++.+... + .+....++..++.+
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4555555555554331110 0122234555666666666666666666666655432 1 11123455666666
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 003829 218 YASNGRYREAVMVFKKMEEE-----GC-KP-TLITYNVILNVYGKMGMPWNKIMALVEGMKS 272 (793)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~ 272 (793)
|...|++++|+..|+++.+. +. .| ...++..+...|...| ++++|...++++.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 155 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG-KAEEVEYYYRRALE 155 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 66666666666666665543 00 11 2234444444455554 45555555544433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-10 Score=99.12 Aligned_cols=130 Identities=14% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD 721 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 721 (793)
|..++...|++++|+..+++.... .| +...+..+...|.+.|++++|.+.|+++++ +.| +..+|..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 445566778888888888887754 23 345667788888899999999999999888 444 568888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH-HHHHhhCCCCCCHH
Q 003829 722 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF-VNNLSKLDPHVTKE 779 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 779 (793)
|++++|+..|+++++. .| +...|..++..|.+.|++++|... ++++++.+|+++..
T Consensus 79 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 9999999999998874 45 478888888888889988776654 58899998886543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=95.88 Aligned_cols=171 Identities=9% Similarity=-0.023 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCCHHHH
Q 003829 601 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE----NFARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 601 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
-+...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+..|++..+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 467888889999999999999999999999876 77888888888888 7 8999999999998865 67788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 677 NTVIFAYCR----NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 677 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
..|...|.. .+++++|.++|++..+.|.. .....+..|+.+|.. .+++++|+.++++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999985432 026788999999998 88999999999999985 23556778
Q ss_pred HHHHHHHcc-C-----CHHHHHHHHHHHhhCCCCCCHHH
Q 003829 748 SIVDGYCKL-N-----QRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 748 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.|+..|... | +.++|..+++++.+.+.......
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~ 205 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE 205 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888654 3 89999999999999986543333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-08 Score=96.27 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-H---HHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-P-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-I---ISY 676 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~ 676 (793)
...+..++..+...|++++|...|+++.+.... + ....+..++.+|.+.|++++|+..|+++++.. |+ . ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 445666777888999999999999999975311 1 13577888999999999999999999999863 33 2 245
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHh
Q 003829 677 NTVIFAYCR------------------NGRMKEASRIFSEMRDSGLVPDV-ITY-----------------NTFVASYAA 720 (793)
Q Consensus 677 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~ 720 (793)
..++.++.. .|++++|...|+++++ ..|+. ..+ ..++..|.+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666654 5789999999999998 44443 111 356778899
Q ss_pred cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 721 DSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 721 ~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.|++++|+..++++++. .|+ ...+..++.+|.+.|+.++|++.++.+...+|...+
T Consensus 160 ~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999999999999985 343 356889999999999999999999999999887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-10 Score=96.65 Aligned_cols=144 Identities=10% Similarity=0.001 Sum_probs=116.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
|+..+...|++++|+..+....... +.+...+-.+...|.+.|++++|++.|+++++.. +-+..+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4555667889999999999887642 2334456678999999999999999999999863 3468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 003829 689 MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDV-VRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 758 (793)
+++|...|+++++ +.| +..++..++.+|.+.|++++|.+. ++++++. .| +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999 555 568899999999999999887765 5888874 55 47888888888887775
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-07 Score=94.23 Aligned_cols=125 Identities=6% Similarity=0.024 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-NFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
.+|...+....+.+..+.|..+|++. +.. ..+...|...+..-...+ +.+.|..+|+...+. .+-+...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45666666666777899999999988 321 234455543333322333 689999999998876 23345556667777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
....|+.+.|+.+|+++.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788999999999988731 467778888777788998888888888764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-08 Score=93.98 Aligned_cols=180 Identities=10% Similarity=0.027 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 298 AAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGC-LPSIVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 298 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
|...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 34455555677777777777777777777655443 2245566777777777788888888877776
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 377 EIGITP-----DVFTYTTLLSGFE--KAG--KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 377 ~~g~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
+. .| +..+...++.+++ ..| +..+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 2455555555533 223 777777778777654 34433333444467777777777777776543
Q ss_pred CC---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 003829 448 CN---------CKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAG 484 (793)
Q Consensus 448 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 484 (793)
.. -+.+..+...+|......|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02345555444444444554 6666666666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-09 Score=117.10 Aligned_cols=180 Identities=9% Similarity=-0.065 Sum_probs=144.3
Q ss_pred HcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 570 ANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 649 (793)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 649 (793)
...|++++|++.+++++... |. ......+.+...+..+...+...|++++|...|+++.+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~-~~-~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA-LD-ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc-cc-ccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 67788888888877654100 00 0012224456788899999999999999999999999875 668889999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003829 650 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 728 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 728 (793)
..|++++|+..|+++++.. +.+...|..+..+|...|++++ .+.|+++++ ..| +...|..++.+|.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863 3357889999999999999999 999999999 445 5688999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 003829 729 DVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 729 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 758 (793)
+.|+++++ +.|+ ...+..++.++...|+
T Consensus 555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99999987 4666 6778888888877555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-09 Score=113.38 Aligned_cols=157 Identities=8% Similarity=-0.104 Sum_probs=121.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 695 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 695 (793)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...|..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 5578889999999999999999999999999863 34578899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 003829 696 FSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL---NQRYEAITFVNNLSK 771 (793)
Q Consensus 696 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 771 (793)
++++++. .| +...+..++.+|...|++++|++.++++++.. +.+...+..++.++... |++++|.+.++++++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999984 44 56889999999999999999999999999853 33578889999999999 999999999999999
Q ss_pred CCCCCC
Q 003829 772 LDPHVT 777 (793)
Q Consensus 772 ~~~~~~ 777 (793)
.+|++.
T Consensus 157 ~~p~~~ 162 (568)
T 2vsy_A 157 QGVGAV 162 (568)
T ss_dssp HTCCCS
T ss_pred cCCccc
Confidence 998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-09 Score=118.63 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=141.9
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 614 GRRQMVAKTNEILHFMN--------DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|+++++.+ +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 443 5677889999999999999999999999999863 3467899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
.|++++|.+.|+++++ ..| +...+..++.+|.+.|++++ ++.|+++++.+ +.+...|..++.+|.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999 555 45889999999999999999 99999999853 3358899999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHH
Q 003829 765 FVNNLSKLDPHVTKELE 781 (793)
Q Consensus 765 ~~~~~~~~~~~~~~~~~ 781 (793)
.++++++.+|++....+
T Consensus 556 ~~~~al~l~P~~~~a~~ 572 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARL 572 (681)
T ss_dssp HHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHH
Confidence 99999999998655443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=86.33 Aligned_cols=130 Identities=12% Similarity=0.137 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677888999999999999999998764 5578888899999999999999999999999864 446778899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
..|++++|.++++++.+.... +...+..++.++...|++++|...++++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999984322 5678899999999999999999999999874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=94.30 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
+..+...+...|++++|...|++.. .++...+..+..+|...|++++|+..+++..+.. +.+...|..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555566666666555542 3355555555555555666666666665555542 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLV--------------P-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|++++|.+.|+++.+.... | ....+..++.+|...|++++|++.++++++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55566665555555552211 0 014445555555555555555555555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-09 Score=95.20 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-Y 683 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 683 (793)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35556677889999999999999988764 5678889999999999999999999999988753 354443333322 2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYE 761 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 761 (793)
...+...+|...++++++ ..| +...+..++.++...|++++|+..++++++....+ +...+..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344568999999998 555 57889999999999999999999999999853222 25688899999999999999
Q ss_pred HHHHHHHHhh
Q 003829 762 AITFVNNLSK 771 (793)
Q Consensus 762 A~~~~~~~~~ 771 (793)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.4e-09 Score=87.11 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=91.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 669 IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 669 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
+.|+ ...+...+..|.+.|++++|.+.|+++++ ..| +...|..++.+|...|++++|+..++++++.+ +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 3444 45677888999999999999999999998 444 56889999999999999999999999999853 3358889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
..++.+|...|++++|++.++++++.+|++...
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999986553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-09 Score=105.36 Aligned_cols=227 Identities=9% Similarity=0.041 Sum_probs=140.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 003829 502 CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLA 580 (793)
Q Consensus 502 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 580 (793)
.|++++|.+++++..+... . .+.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776655311 0 1222 46677777666654 346777888888888
Q ss_pred HHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCH
Q 003829 581 LSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENF 654 (793)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 654 (793)
.+.+.... ....+-.. -..+|..+...|...|++++|+..|++..+. |-+. -..++..+..+|.. |++
T Consensus 58 ~~~~al~~-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 58 AYLQEAEA-----HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHH-----HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 88876541 11222111 1346777788888888888888888877653 2111 12456677777777 888
Q ss_pred HHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCh
Q 003829 655 ARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLF 724 (793)
Q Consensus 655 ~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~ 724 (793)
++|+..|++.+...... + ..++..+..+|...|++++|..+|+++++. +..+. ...+..++.++...|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 88888888877641110 1 356777778888888888888888888762 11111 13566666777777888
Q ss_pred HHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKPN------QNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
++|+..+++.+ . .|+ ......++.++ ..|+.+.+.+
T Consensus 212 ~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88888888877 3 332 12334455544 5667665555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-07 Score=96.09 Aligned_cols=370 Identities=11% Similarity=-0.020 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGR-YREAVMVFKKMEEE-GCKP-TLITYNV 248 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~p-~~~~~~~ 248 (793)
...+|...+..+-. |+++.+..+|+..+.. .|++..|...+....+.+. .+....+|+..... |..+ +...|..
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 33445555544433 8899999999998875 3588888888888877764 45677788877754 4333 6678888
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 249 ILNVYGK----MGMPWNKIMALVEGMKSAGVKPDS-YTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDV 323 (793)
Q Consensus 249 ll~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 323 (793)
.+..+.. .| +.+.+..+|++.+..... +. ..|..... +........+..+..+
T Consensus 91 Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~~~~------------------- 148 (493)
T 2uy1_A 91 YIEEEGKIEDEQT-RIEKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKIVGD------------------- 148 (493)
T ss_dssp HHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHHHHH-------------------
T ss_pred HHHHHHhchhhhH-HHHHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHHHHH-------------------
Confidence 7776542 34 577888888888873211 11 12221111 1111111112111111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDG--L-----LEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 396 (793)
. .+.+..|..+++++...-...+...|...+..-...+ - .+.+..+|++++.. ++-+...|...+..+.+
T Consensus 149 ~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 149 T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 1 1123333444433322100012234444443322211 0 23455666666654 23345556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------CCCCHHHHHHHHHHH
Q 003829 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN------------CKPDIVTWNTLLAVF 464 (793)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~l~~~~ 464 (793)
.|+.+.|..+++..... +.+...+.. |....+.++. ++.+.+.- .......|...+...
T Consensus 226 ~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 77777777777776665 223222221 1111111111 11111100 001124566666766
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 465 GQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR-CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQS 543 (793)
Q Consensus 465 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 543 (793)
.+.+..+.|..+|+.. +. ...+...|...+..-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 6777888899999888 32 12244444433322222 23689999999988876432 455666677777888999999
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003829 544 EKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIY 586 (793)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (793)
..+|+.+. .....|...+..-...|+.+.+..++++..
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998873 245566666665566788888888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-08 Score=93.15 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003829 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCR 290 (793)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 290 (793)
+..+|.+.|++++|+..|++..+..+ -+...+..+...+...| ++++|+..|++..+..+. +..++..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRG-QEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555432 24455555555555555 555555555555554322 3444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=100.18 Aligned_cols=165 Identities=9% Similarity=-0.071 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIIS-YNT 678 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 678 (793)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++++... .|+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4456677888889999999999999999999875 668889999999999999999999999999875 445433 333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYC 754 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 754 (793)
....+...++.++|...++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..|.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHH
Confidence 33457778889999999999998 445 5688999999999999999999999999985 343 678899999999
Q ss_pred ccCCHHHHHHHHHHHhh
Q 003829 755 KLNQRYEAITFVNNLSK 771 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~ 771 (793)
..|+.++|...+++.+.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 99999999999998764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-08 Score=95.78 Aligned_cols=209 Identities=12% Similarity=-0.006 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDID---VYAYTSLITTYASNGRYREAVMVFKKMEEEGCK-PT-LITY 246 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~ 246 (793)
+...+......+.+.|++++|...|+.+++..+. + ..++..++.+|.+.|++++|+..|+++.+..+. |. ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 5566777777788888888888888888776443 3 667788888888888888888888888876431 22 3466
Q ss_pred HHHHHHHHh--------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003829 247 NVILNVYGK--------MGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYN 318 (793)
Q Consensus 247 ~~ll~~~~~--------~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~ 318 (793)
..+..++.. .| ++++|+..|+++.+..+. +......+ ..+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQT-DTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCH-HHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 677777777 77 788888888887765432 11111111 111111100 011245
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC---
Q 003829 319 ALLDVYGKCRRPKEAMQVLREMKINGCLP--SIVTYNSLISAYARD----------GLLEEAMELKTQMVEIGITPD--- 383 (793)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~--- 383 (793)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|++.|+++.+.. |+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 56667777777777777777776642211 233566666666655 77777777777777652 32
Q ss_pred -HHHHHHHHHHHHHcCCHHHH
Q 003829 384 -VFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 384 -~~~~~~li~~~~~~g~~~~a 403 (793)
......+...+.+.++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23344444445555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-07 Score=88.49 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc
Q 003829 148 KTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEG--KVSVAASLLHGLHKDGFDIDVYAYTSLITTY----ASN 221 (793)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 221 (793)
..+.|+..+..+.. .+| ....+|+.-..++...| +++++++.++.++...+. +..+|+.-..++ ...
T Consensus 48 ~s~~aL~~t~~~L~---~nP---~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 48 YSERALHITELGIN---ELA---SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp CSHHHHHHHHHHHH---HCT---TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH---HCc---HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33688999988877 333 36678888888888888 999999999998887665 667777777666 555
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--
Q 003829 222 ---GRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWN--KIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL-- 294 (793)
Q Consensus 222 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-- 294 (793)
+++++++.+++++.+..++ +..+|+--.-.+.+.| .++ +++++++++.+.++. |...|+.-...+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 7889999999999887533 7788888887888877 677 888888888887665 77777777666666665
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHH
Q 003829 295 ----HEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE-AMQVLREMKING--CLPSIVTYNSLISAYARDGLLEE 367 (793)
Q Consensus 295 ----~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~ 367 (793)
++++.+.+..++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ ...+...+..++..|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 778888888877764 3477778777777777776443 445555554322 13356677777777878888888
Q ss_pred HHHHHHHHHH
Q 003829 368 AMELKTQMVE 377 (793)
Q Consensus 368 A~~~~~~m~~ 377 (793)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.2e-08 Score=95.27 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---CCC--H
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL------TTYNTLMYMYSRSENFARAEDVLREILAKGI---KPD--I 673 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~ 673 (793)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++...... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445666778899999999999888775322 22 2234466677888999999999999986421 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPD-----VITYNTFVASYAADSLFVEALDVVRYMIKQG----CKPN- 742 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~- 742 (793)
.+|+.++..|...|++++|..+|+++.+. ...|+ ..++..++.+|...|++++|+..++++++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58889999999999999999999999831 01222 2588999999999999999999999987531 1111
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHhhC
Q 003829 743 QNTYNSIVDGYCKLNQRYEA-ITFVNNLSKL 772 (793)
Q Consensus 743 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 772 (793)
..+|..++.+|.+.|++++| ..+++++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67789999999999999999 8889988765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-07 Score=87.88 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=117.5
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C
Q 003829 543 SEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQ----M 618 (793)
Q Consensus 543 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~ 618 (793)
|...|++..+.+ +...+..+...|...+++++|+.+|++... . -+...+..|...|.. + +
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---------~---g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA---------Q---GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------T---TCHHHHHHHHHHTTS-STTSCC
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------c---CCHHHHHHHHHHHHc-CCCCCC
Confidence 444444444432 444555555555555566666665554321 1 244555556666655 5 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCR----NGRM 689 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~ 689 (793)
+++|.+.|++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++
T Consensus 69 ~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 69 YPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 778888888777754 66777777777776 77888888888888876421 126778888888887 7889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 003829 690 KEASRIFSEMRDSGLVPDVITYNTFVASYAAD-S-----LFVEALDVVRYMIKQG 738 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 738 (793)
++|.++|++..+. ..+...+..|+.+|..- | ++++|+.++++..+.|
T Consensus 146 ~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 146 VKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999998885 22445677788877643 3 7899999999988876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-07 Score=86.66 Aligned_cols=171 Identities=9% Similarity=0.018 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 003829 188 KVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG--RYREAVMVFKKMEEEGCKPTLITYNVILNVY----GKM---GM 258 (793)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~---g~ 258 (793)
..++|+.+++.++...+. +..+|+.-..++...| ++++++.+++.+...+++ +..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~- 124 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF- 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC-
Confidence 446889999998887665 7778999999998888 899999999999987644 556666655554 444 3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------h
Q 003829 259 PWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHE--EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR------P 330 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~ 330 (793)
++++++++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++.+.++++.+... .|...|+.-..++.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 566666666666665443 5555555555555555555 55555555555432 244444444444444443 4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003829 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGL 364 (793)
Q Consensus 331 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 364 (793)
+++++.+++++.. .+-|...|+-+...+.+.|+
T Consensus 203 ~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 203 DEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCC
Confidence 4444444444443 22244444444444444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.8e-07 Score=88.55 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=128.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHH
Q 003829 607 NAMISIYGRRQMVAKTNEILHFMNDSGF-TPSL----TTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISY 676 (793)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 676 (793)
...+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++...... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346678889999999999999987531 1221 13345777788888999999999999984222 22 3368
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRD----S-GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNT 745 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 745 (793)
+.++.+|...|++++|..+|+++++ . +..+. ..+|..++.+|.+.|++++|+.+++++++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999985 1 12222 257899999999999999999999998752 22222 678
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHhhC
Q 003829 746 YNSIVDGYCKLNQ-RYEAITFVNNLSKL 772 (793)
Q Consensus 746 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 772 (793)
|..++.+|.+.|+ +++|.+.++++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999995 69999999999865
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=87.57 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 750 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 750 (793)
...+..++..+...|++++|...|+++++ ..| +...|..++.+|...|++++|+..|+++++. .| +...|..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 45677788888888888888888888888 444 5677888888888888888888888888874 44 477888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+|.+.|++++|+..++++++..|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888887754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-07 Score=86.35 Aligned_cols=204 Identities=12% Similarity=0.010 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H-HHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPT-L-ITYN 247 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~ 247 (793)
+...+......+...|++++|...|+.+++..+.. ...++..++.+|.+.|++++|+..|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34566667777888888888888888887654321 135677788888888888888888888887643311 1 2455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003829 248 VILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPD-KVTYNALLDVYGK 326 (793)
Q Consensus 248 ~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 326 (793)
.+...+.+.| .. .++ .|..+...+...|++++|...|+++.+. .|+ ...+.++....
T Consensus 83 ~~g~~~~~~~-~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~-- 140 (225)
T 2yhc_A 83 MRGLTNMALD-DS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV-- 140 (225)
T ss_dssp HHHHHHHHHH-C-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH--
T ss_pred HHHHHHHhhh-hh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH--
Confidence 5555555433 10 111 1112223344567777888888777765 232 22222111100
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDV---FTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a 403 (793)
.+...+ ......+...|.+.|++++|+..|+++++.. +.+. ..+..+..++.+.|+.++|
T Consensus 141 --------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 --------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp --------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 000000 0112245566777777777777777777652 1121 3466667777777777777
Q ss_pred HHHHHHHHHCC
Q 003829 404 MKVFEEMRSAG 414 (793)
Q Consensus 404 ~~~~~~~~~~~ 414 (793)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 77777776653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-08 Score=98.96 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=154.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003829 466 QNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR-CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSE 544 (793)
Q Consensus 466 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 544 (793)
..|++++|.+++++..+.... .+.+ .++++.|...|..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356788888888887764221 1333 57888888887765 34577789999999
Q ss_pred HHHHHHhcCCC---CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003829 545 KIFAEMKGGRC---KP--NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSP-DIPTLNAMISIYGRRQM 618 (793)
Q Consensus 545 ~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 618 (793)
..|.+..+... .+ -..+|..+...|...|++++|+..+++.+. .....+-.. ...++..+...|.. |+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV-----MYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-----HHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 88887754310 11 134677888888899999999999887652 222233211 13567788888888 99
Q ss_pred HHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC
Q 003829 619 VAKTNEILHFMNDSGFTP-S----LTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGR 688 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 688 (793)
+++|+..|++..+..... + ..++..+...|...|++++|+..|++.+..... .+ ...+..++.++...|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 999999998887642111 1 356778888899999999999999998864211 11 2356667777888899
Q ss_pred HHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHhcCChHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVP-DV---ITYNTFVASYAADSLFVEALD 729 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~ 729 (793)
+++|...|++.+ ....- +. .....++.++ ..|+.+.+.+
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999988 42211 11 2344555544 5677655555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=90.51 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H
Q 003829 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVY-G 254 (793)
Q Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~ 254 (793)
+......+...|++++|...|+.+++..+. +...+..+..++...|++++|+..|+++.+..+ +...+..+.... .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 445556667777788888777776655433 667777777777788888888888777765532 443332222111 1
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 003829 255 KMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSP-DKVTYNALLDVYGKCRRPKEA 333 (793)
Q Consensus 255 ~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A 333 (793)
..+ ...+++..+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 86 ~~~-~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQA-AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHH-TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhc-ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 111 122345555555544322 34455555555555555555555555555442111 133455555555555555555
Q ss_pred HHHHHHH
Q 003829 334 MQVLREM 340 (793)
Q Consensus 334 ~~~~~~~ 340 (793)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=92.16 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+...+..+...+...|++++|...|+.++...+. +..++..++.++.+.|++++|+..|+++.+.. |+.........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4445555556666666666666666666555433 55566666666666666666666666665442 33322222111
Q ss_pred -HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 003829 252 -VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFS-PDKVTYNALLDVYGKCRR 329 (793)
Q Consensus 252 -~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~ 329 (793)
.+.+.+ ..++|+..+++..+..+. +...+..+...+...|++++|...++++.+.... .+...+..++..|...|+
T Consensus 193 ~~l~~~~-~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQA-ADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHH-TSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhc-ccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 233333 344455555555444322 3444555555555555555555555555544211 013345555555555555
Q ss_pred hHHHHHHHHHH
Q 003829 330 PKEAMQVLREM 340 (793)
Q Consensus 330 ~~~A~~~~~~~ 340 (793)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=88.05 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
...+..++..+...|++++|...|+++++ ..| +...|..++.+|...|++++|+..++++++.+ +.+...+..++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45666777778888888888888888877 333 56777778888888888888888888887742 224677777888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 752 GYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+|...|++++|+..++++++..|+++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 888888888888888888887776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-07 Score=85.43 Aligned_cols=143 Identities=13% Similarity=0.057 Sum_probs=121.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..+...+...|++++|+..|+++. .++...|..++.+|...|++++|.+.|+++++.... +...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34566778889999999999999874 568889999999999999999999999999984322 5688999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPN----------------QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECK 783 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 783 (793)
..|++++|++.++++++.. +.+ ...+..++.+|.+.|++++|...++++++.+|++....+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 9999999999999999842 212 37889999999999999999999999999999876666555
Q ss_pred HHHHH
Q 003829 784 LSDRI 788 (793)
Q Consensus 784 l~~~l 788 (793)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-08 Score=87.87 Aligned_cols=127 Identities=7% Similarity=0.043 Sum_probs=93.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 003829 649 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLF--V 725 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 725 (793)
...|++++|+..+++..+.. +.+...|..++.+|...|++++|...|+++.+.... +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34577888888888887753 345678888888888888888888888888873222 55677777777 7788887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 726 EALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 726 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+|+..++++++.+ +.+...+..++.+|...|++++|...++++++..|++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888888752 234777888888888888888888888888888887644
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-07 Score=78.56 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVAS 717 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 717 (793)
..+...+..|.+.|++++|++.|++.++.. +.+...|..++.+|...|++++|+..|+++++ +.| +...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 345667777888888888888888888753 34577788888888888888888888888887 444 45778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD 751 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 751 (793)
|...|++++|++.|+++++. .|+ ...+..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHH
Confidence 88888888888888888874 453 555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.4e-08 Score=83.12 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFV 715 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 715 (793)
+...+..+...+.+.|++++|+..|++++... +.+...|..++.+|...|++++|...|+++++ +.| +...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 45567788888999999999999999999863 34688899999999999999999999999998 555 457889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.+|...|++++|+..|+++++. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999984 56654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-07 Score=87.70 Aligned_cols=192 Identities=11% Similarity=-0.048 Sum_probs=142.3
Q ss_pred cCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhC-----------
Q 003829 571 NGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM-------ISIYGRRQMVAKTNEILHFMNDS----------- 632 (793)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~----------- 632 (793)
..++...|.+.|.++... -+-....|..+ ...+...++..+++..+....+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 578888898888876641 13345667766 45555555566666666655541
Q ss_pred -CCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 633 -GFT--------PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 633 -~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
|.- .-......+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 210 01233455677888999999999999998875 3554477777788999999999999998665521
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 704 LVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 704 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.|. ...+..++.++...|++++|+..|++.......|. ......++.++.+.|+.++|...|+++...+|+
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 111 24788999999999999999999999985433254 456778889999999999999999999999998
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-07 Score=101.01 Aligned_cols=152 Identities=11% Similarity=-0.030 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003829 187 GKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266 (793)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~ 266 (793)
|++++|.+.++++.+..+. +...+..+...+...|++++|+..|++..+.. +.+...|..+...|...| ++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g-~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQ-RHAEAAVL 79 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4455555555555544322 45555555566666666666666666655543 124455555555555555 55666555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKC---RRPKEAMQVLREMKIN 343 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 343 (793)
+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555554322 34455555555555566666666666555542 22344555555555555 6666666666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-07 Score=83.74 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
..|..+...+...|++++|..+|+++++ ..| +...|..++.+|...|++++|+..++++++.. +.+...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555555 222 34455555555555555555555555555431 1124455555555
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
|.+.|++++|+..++++++.+|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 55555555555555555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=86.31 Aligned_cols=160 Identities=12% Similarity=0.010 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKP-DIISYNTVIFAYCRNGR 688 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 688 (793)
...|++++|.++++.+... ......++..+...+...|++++|+..+++.... +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578999999966555442 2345677889999999999999999999998862 1111 24678888999999999
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccC
Q 003829 689 MKEASRIFSEMRDS----GLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGC-KPN----QNTYNSIVDGYCKLN 757 (793)
Q Consensus 689 ~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g 757 (793)
+++|.+.+++..+. +-.+ ....+..++.++...|++++|...+++.++..- ..+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999998872 2122 135688999999999999999999999874210 112 345678899999999
Q ss_pred CHHHHHHHHHHHhhCCC
Q 003829 758 QRYEAITFVNNLSKLDP 774 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~ 774 (793)
++++|...++++++...
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998743
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5e-07 Score=80.61 Aligned_cols=131 Identities=15% Similarity=0.074 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 718 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 718 (793)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++++.... +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345566667777788888888888777652 335667777778888888888888888888773221 456777788888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHhhC
Q 003829 719 AADSLFVEALDVVRYMIKQGCKPNQNTYNS--IVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
...|++++|+..++++++.. +.+...+.. ++..+.+.|++++|+..+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888887642 223444433 333366778888888887776543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.1e-08 Score=80.85 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG--CKPN----QNT 745 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~ 745 (793)
...+..++..+.+.|++++|++.|+++++ +.| +...|..++.+|...|++++|++.++++++.+ ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34667788888888899999999888888 444 45778888888889999999998888887631 1111 246
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
|..++.++...|++++|++.++++++..|++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 7778888889999999999999998887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-06 Score=83.00 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=106.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHH
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGF-SPDK----VTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PS----IVTYNS 354 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 354 (793)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|++..+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888876421 2221 13334666677777888888888888763221 22 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 003829 355 LISAYARDGLLEEAMELKTQMVEI-----GITPD-VFTYTTLLSGFEKAGKDESAMKVFEEMRSA----GCKPN-ICTFN 423 (793)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 423 (793)
+...|...|++++|++.++++.+. +..+. ..++..+...|.+.|++++|...+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887742 11111 235667777788888888888887776542 21112 45677
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 003829 424 ALIKMHGNRG-NFVEMMKVFDEIN 446 (793)
Q Consensus 424 ~l~~~~~~~g-~~~~A~~~~~~~~ 446 (793)
.+..+|.+.| ++++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777777 4577777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-07 Score=77.58 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...|..++..+...|++++|...|+++++.... +...|..++.+|...|++++|+..++++++.+ +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346677777888888888888888888873222 46778888888888888888888888888742 2247778888888
Q ss_pred HHccCCHHHHHHHHHHHhhCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~ 773 (793)
+...|++++|+..++++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888888887
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=77.93 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 752 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 752 (793)
.+..++..+.+.|++++|...|+++++ ..| +...+..++.++...|++++|+..++++++. .| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 455677888899999999999999998 444 5688889999999999999999999999885 45 47888899999
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
|.+.|++++|+..++++++.+|+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=80.26 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...+..+...+...|++++|...|+++++.+.. +...|..++.+|...|++++|+..++++++.+ +.+...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 345556667777777788887777777773222 45667777777777788888888888777642 2246667777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
|...|++++|+..++++++..|+++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 7788888888888888777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-07 Score=77.38 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+...|..++..+...|++++|...|+++++.... +...+..++.+|...|++++|+..++++++.+ +.+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 4566667777777777777777777777763222 35667777777777777777777777777642 224666777777
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCC
Q 003829 752 GYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+|...|++++|+..++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777777665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=77.95 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 683 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 683 (793)
..+..++..+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+.. +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456778888999999999999999998864 5678899999999999999999999999999863 44678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 684 CRNGRMKEASRIFSEMRDSGLVPDVITY--NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 684 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...|++++|..+|+++.+.... +...+ ..++..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999984322 44455 3444447788999999999988753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-05 Score=77.93 Aligned_cols=167 Identities=8% Similarity=-0.027 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCCHHHHHHH
Q 003829 189 VSVAASLLHGLHKDGFDIDVYAYTSLITTYASNG-RYREAVMVFKKMEEEGCKPTLITYNVILNVYGKM-GMPWNKIMAL 266 (793)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~~a~~~ 266 (793)
.++|+++++.++...+. +..+|+.-..++...| .+++++.+++.+....++ +..+|+--...+.+. +.+.++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555666665555443 4555666555555555 366666666666655432 455555554444443 2134555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hH
Q 003829 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHE--------EAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR-------PK 331 (793)
Q Consensus 267 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~ 331 (793)
++++.+...+ |..+|+.-.-.+.+.|.++ ++.+.++++.+... -|...|+....++.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 5555554333 4444444333333222222 44555555554432 244444444444444443 34
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003829 332 EAMQVLREMKINGCLPSIVTYNSLISAYA 360 (793)
Q Consensus 332 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 360 (793)
++++.++++... .+-|...|+-+-..+.
T Consensus 226 eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 226 DELIYILKSIHL-IPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 444444444443 2223444444333333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-05 Score=76.77 Aligned_cols=222 Identities=9% Similarity=0.022 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-C-CHHHH
Q 003829 221 NGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG-S-LHEEA 298 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-~~~~A 298 (793)
.+..++|++++++++..++. +..+|+.-...+...|..+++++++++.+....++ +..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34457899999999988643 67788888888888874599999999999988766 677787777666665 6 78899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC------
Q 003829 299 AGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK--------EAMQVLREMKINGCLPSIVTYNSLISAYARDGL------ 364 (793)
Q Consensus 299 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 364 (793)
..+++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 99999998764 336667766655555555555 8888888888863 4477788887777777775
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 003829 365 -LEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD--------------------ESAMKVFEEMRSAG-----CKPN 418 (793)
Q Consensus 365 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 418 (793)
++++++.+++++... +-|...++-+-..+.+.|+. ....+...++...+ -.+.
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 688888888888764 45777777666666655543 22222222222211 0234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003829 419 ICTFNALIKMHGNRGNFVEMMKVFDEINK 447 (793)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 447 (793)
......+++.|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55666666666666666666666666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.8e-06 Score=81.81 Aligned_cols=131 Identities=9% Similarity=-0.011 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCC----HH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGF---TPS--LTTYNTLMYMYSRSENFARAEDVLREILAK--GIKPD----II 674 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~ 674 (793)
+..+...+...|++++|...+++..+... .+. ..+++.+...|...|++++|+..++++.+. ..+.+ ..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 34456667788899999999998875421 112 457889999999999999999999998832 01111 25
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
++..++.+|...|++++|..+++++++. +.... ..+|..++.+|...|++++| ...++++++
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8889999999999999999999998862 11111 57889999999999999999 777888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-06 Score=74.43 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 719 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 719 (793)
.+..++..+...|++++|...++++.... +.+...+..++.++...|++++|.+.++++.+.... +...+..++.+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444444444555555555555544431 223444444555555555555555555555442111 2344445555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 720 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
..|++++|+..++++++.. +.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 1134444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-07 Score=74.29 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSI 749 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 749 (793)
+...+..++..+...|++++|...++++.+.... +...+..++.++...|++++|++.++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 3556777888888899999999999998884322 56788888999999999999999999998752 33 57788899
Q ss_pred HHHHHcc-CCHHHHHHHHHHHhhCCCCCC
Q 003829 750 VDGYCKL-NQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 750 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 777 (793)
+.++.+. |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999988754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-07 Score=89.04 Aligned_cols=132 Identities=8% Similarity=-0.036 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 703 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 703 (793)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|...++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44555566666666666666666666665421110 367777888888888888888888888873
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHhhC
Q 003829 704 LVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEA-ITFVNNLSKL 772 (793)
Q Consensus 704 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 772 (793)
.| +...|..++.+|...|++++|+..|+++++.. +.+...+..++.++.+.|++++| ...+++|++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45777788888888888888888888887742 22467777788888888888777 4566666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=72.16 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 753 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 753 (793)
..|..++..+...|++++|.++++++.+... .+..++..++.++...|++++|+.+++++++.+ +.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4455555555566666666666666555221 134555555666666666666666666665532 22355555666666
Q ss_pred HccCCHHHHHHHHHHHhhCCCCC
Q 003829 754 CKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 754 ~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
...|++++|..+++++++.+|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc
Confidence 66666666666666666665553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.3e-07 Score=74.52 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..+...+...|++++|.+.++++.+.. +.+..++..++.++...|++++|..+++++.+.... +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 6678889999999999999999999999863 446788999999999999999999999999984322 56888999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
|...|++++|...++++++.. +.+...+..++..+.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 999999999999999998853 334677777777665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=72.98 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...+..++..+...|++++|...|+++.+.... +...+..++.++...|++++|+..++++++.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456777788888888888888888888873222 56778888888888888999988888888752 3357788888888
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+...|++++|...++++++.+|++..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 88899999999999999888887544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=79.14 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD--------V-----ITYNTFVASYAADSLFVEALDVVRYMIKQ--- 737 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 737 (793)
..+...+..+...|++++|...|+++++ +.|+ . ..|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3455666777788888888888888887 3443 2 38899999999999999999999999873
Q ss_pred --CCCCC-HHHH----HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 738 --GCKPN-QNTY----NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 738 --~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+.|+ ...| ...+.++...|++++|+..|++++++.|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 11676 6788 899999999999999999999999998876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.2e-07 Score=75.66 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 752 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 752 (793)
...|..++..+...|++++|.+.|+++.+.... +...+..++.+|...|++++|++.++++++.. +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 445555555555666666666666665552211 34555555556666666666666666655531 2235555556666
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+.+.|++++|+..++++++.+|++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 66666666666666666666555433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.3e-07 Score=75.97 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 714 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 714 (793)
+.+...+..+...+...|++++|+..++++.+.. +.+...+..++.+|...|++++|.++++++.+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4567778899999999999999999999999863 346788999999999999999999999999984322 56889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQ 758 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 758 (793)
+.+|...|++++|++.++++++.. +.+...+..+..++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998752 2246777788888777664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.8e-07 Score=81.88 Aligned_cols=121 Identities=7% Similarity=0.093 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRM--K 690 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 690 (793)
...|++++|...+++..+.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999988764 6688899999999999999999999999999863 3467788888888 7899998 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|..+++++++.... +...+..++.+|...|++++|+..++++++.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999984322 4688899999999999999999999999984
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-07 Score=79.40 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 625 ILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.|+++.+.. +.+...+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|...|+++++ .
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 344444432 3355667778888999999999999999998863 44678888999999999999999999999998 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 705 VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 705 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.| +...+..++.+|...|++++|+..|+++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 4578888999999999999999999999874
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-07 Score=88.44 Aligned_cols=165 Identities=6% Similarity=-0.088 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...+..++..+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788889999999999999999999874 5588899999999999999999999999999863 345788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 760 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 760 (793)
+|...|++++|...|+++.+. .|+. ..+...+....+. .++... ....+.-...+..+...+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999999873 2211 1111111111111 111111 112222233444444444332 257777
Q ss_pred HHHHHHHHHhhCCCCC
Q 003829 761 EAITFVNNLSKLDPHV 776 (793)
Q Consensus 761 ~A~~~~~~~~~~~~~~ 776 (793)
+|++.++++++.+|++
T Consensus 153 ~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 153 RELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHTTTSGGGTTTSCH
T ss_pred HHHHHHHhhhccccch
Confidence 7777777777776653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.9e-05 Score=74.70 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQ--MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-FARAEDVLREILAKGIKPDIISY 676 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~ 676 (793)
+-+..+|+.-...+.+.+ .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.++++++.. +-|...|
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 457778888777777777 4899999999999876 6788888888888888888 699999999999875 4477788
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----------CChHHHHHH
Q 003829 677 NTVIFAYCRN--------------GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD-----------SLFVEALDV 730 (793)
Q Consensus 677 ~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~ 730 (793)
+.....+... +.++++++++++++. ..| |...|+.+-..+... +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 8877777665 458899999999998 444 667777666666655 457899999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHH---HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003829 731 VRYMIKQGCKPN-QNTYNSIVD---GYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 786 (793)
Q Consensus 731 ~~~~~~~~~~p~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 786 (793)
++++++ ..|| ..++..++. .....|..++...++.++.+.+|- -...|..+.+
T Consensus 261 ~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~ 317 (331)
T 3dss_A 261 CKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRS 317 (331)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred HHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHH
Confidence 999998 4566 333323222 223568889999999999999987 4445555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.2e-07 Score=74.58 Aligned_cols=108 Identities=10% Similarity=0.113 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITYN 712 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 712 (793)
..+..++..+.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|++.++++++.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667777788888888888888887753 33466777888888888888888888888776211 111 14677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 749 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 749 (793)
.++.++...|++++|++.|++.++ ..||..+...|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 788888888888888888888876 35666554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-05 Score=74.03 Aligned_cols=167 Identities=5% Similarity=0.007 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003829 150 DLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGK----------VSVAASLLHGLHKDGFDIDVYAYTSLITTYA 219 (793)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (793)
++|+.++..+.. .+|. +..+|+.--.++...++ ++++..+++.++...+. +..+|+.-..++.
T Consensus 47 ~eaL~~t~~~L~---~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~ 119 (331)
T 3dss_A 47 ESVLELTSQILG---ANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 119 (331)
T ss_dssp HHHHHHHHHHHT---TCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHh
Confidence 367777777766 3333 44555555555544433 56777777777766554 6777777777777
Q ss_pred HcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----
Q 003829 220 SNGR--YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRG----- 292 (793)
Q Consensus 220 ~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 292 (793)
+.|+ +++++.+++++.+..+ -|..+|+--.-++...|..++++++.++++.+..+. |..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 7763 7777888887777653 366777776666666662257777777777776554 566666555444433
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 293 ---------SLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (793)
Q Consensus 293 ---------~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 326 (793)
+.++++.+.+....... +-|...|+-+-..+.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 23555666666555542 2245555444333333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-06 Score=74.09 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 747 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 747 (793)
+...+..++..+...|++++|...|+++++ ..|+ ...+..++.+|...|++++|+..++++++.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 355666666677777777777777777776 4444 4566677777777777777777777776642 22466677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 748 SIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 748 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.++.+|...|++++|...++++++.+|++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 777777777777777777777777777643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-06 Score=72.04 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+...+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..... +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34567788889999999999999999998864 5678889999999999999999999999999863 445788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 724 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 724 (793)
++...|++++|..+|+++.+.... +...+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 999999999999999999984322 567888888888888775
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.8e-07 Score=78.70 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------GL--------VP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..+...+..+.+.|++++|...|+++++. .. .| +...|..++.+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666666666666666666652 00 22 235778888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 737 QGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 737 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.+ +.+...|..++.+|...|++++|+..++++++.+|++.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 42 22477888888888888888888888888888888866
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-06 Score=71.54 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVA 716 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 716 (793)
...+..+...+.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|...++++++ +.| +...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456667777888888888888888888763 33577888888888888888888888888888 344 4577888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003829 717 SYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|...|++++|+..++++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888888763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-06 Score=84.36 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003829 636 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTF 714 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 714 (793)
.+...+..+...+...|++++|+..|+++++.. +.+...|..++.+|...|++++|...++++++ ..| +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 356778888999999999999999999999863 33688899999999999999999999999998 444 56889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 003829 715 VASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+.+|...|++++|+..++++++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999873
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-06 Score=78.14 Aligned_cols=131 Identities=12% Similarity=-0.041 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 639 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----------------IISYNTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 639 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
..+..+...+...|++++|+..|++.++.. +.+ ...|..+..+|...|++++|...++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345555666666777777777777776542 112 267788888888889999999999988884
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHhhCC
Q 003829 703 GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKLD 773 (793)
Q Consensus 703 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 773 (793)
.| +...+..++.+|...|++++|++.++++++.. +.+...+..+..++...|+.+++. ..++.+...+
T Consensus 118 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 118 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred --CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34 56788888888999999999999999988742 224777888888888888877776 5566665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-06 Score=79.55 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=75.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhc
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS--IVTYNSLISAYARD 362 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 362 (793)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4445666677777777776666543 333355555566777777777777776443321 111 22556666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 363 GLLEEAMELKTQMVEIGITPD--VFTYTTLLSGFEKAGKDESAMKVFEEMRSA 413 (793)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 413 (793)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777777664332133 224445555666777777777777777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=73.28 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIV 750 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 750 (793)
..++..+...|++++|...|+++.+.... +. ..+..++.++...|++++|+..++++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34556667777777777777777763221 12 466677777777777777777777777642 222 45567777
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 751 DGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 751 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
.++.+.|++++|+..++++++..|+++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 7777778888888888877777776544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.1e-06 Score=84.51 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---------------LTTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
...+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4577888899999999999999999999874 333 588999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEA-LDVVRYMIK 736 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 736 (793)
. +.+...|..+..+|...|++++|...|+++++ +.| +...+..+..++...|++++| ...+++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44688999999999999999999999999999 455 568889999999999999998 557777753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=75.61 Aligned_cols=99 Identities=8% Similarity=-0.092 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 716 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 716 (793)
+...+..+...+.+.|++++|+..|++++..+ +.+...|..+..+|...|++++|...|+++++.+.. +...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 44556667778888999999999999988763 346778888889999999999999999999884322 4577888899
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003829 717 SYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+|...|++++|+..++++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-06 Score=72.44 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KPN----QNTYNS 748 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 748 (793)
.|..++..+...|++++|..+|+++.+.... +...+..++.+|...|++++|+..++++++... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4444555555555555555555555552211 344555555555555555555555555554210 111 444555
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
++.++.+.|++++|...++++++..|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55556666666666666666665555
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=66.74 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..++..+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+.... +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4456667777777888888888888887652 335677777788888888888888888888873222 45777788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 751 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 751 (793)
+...|++++|.+.++++++. .| +...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 88888888888888888764 34 3455544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=77.29 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VI 709 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 709 (793)
++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|.++++++.+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777776643100 11 24677778888888888888888888775210 011 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
.+..++.++...|++++|++.+++.++. +..+. ...+..++..+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6778888888999999999988888742 11111 45677888889999999999999998887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-06 Score=78.16 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHH
Q 003829 146 HKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKD----GF-DIDVYAYTSLITTYAS 220 (793)
Q Consensus 146 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~ 220 (793)
.|+++.|...++.+.. .......++..+..++...|++++|...+++.... +. .....++..+...+..
T Consensus 5 ~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 5 AHDYALAERQAQALLA------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp --CHHHHHHHHHHHHT------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4566666664444432 11124455556666666666666666666655431 00 1123345555555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 003829 221 NGRYREAVMVFKKMEE 236 (793)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (793)
.|++++|...|++..+
T Consensus 79 ~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 79 AGNWDAARRCFLEERE 94 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-06 Score=71.50 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 714 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 714 (793)
+.+...+..+...+...|++++|+..|++++... +.+...|..++.++...|++++|...++++++.... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3466777778888888888888888888887753 335677888888888888888888888888874322 46778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+.+|...|++++|+..++++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-06 Score=71.01 Aligned_cols=114 Identities=10% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITY 711 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~ 711 (793)
...+..++..+...|++++|...++++.+.. +.+...+..++.+|...|++++|..+++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888899999999999999999999863 44678899999999999999999999999998422 122 6788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
..++.+|...|++++|.+.++++++. .|+...+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 99999999999999999999999985 457666666655543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-07 Score=74.25 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGL-VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
.|++++|...|+++++.+. .| +...+..++.+|...|++++|+..++++++.. +.+...+..++.++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777776321 13 23566777777777777777777777777642 224667777777777777777777
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777777766544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=71.71 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFV 715 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 715 (793)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|+++++ +.| +...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34556667777777788888888888777753 33566777777888888888888888888877 334 457777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+|...|++++|+..++++++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888887763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-05 Score=68.28 Aligned_cols=112 Identities=9% Similarity=-0.010 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 003829 635 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI 709 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 709 (793)
+.+...+..+...+...|++++|+..|++..+. .|+ ...|..+..+|...|++++|...++++++. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 345666777777788888888888888888774 344 567777888888888888888888888873 33 457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 752 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 752 (793)
.+..++.+|...|++++|+..++++++. .| +...+..+...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 7788888888888888888888888774 34 35555554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=87.87 Aligned_cols=154 Identities=6% Similarity=-0.124 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 603 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 682 (793)
Q Consensus 603 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 682 (793)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4456666667777777777777777766542 33221 223333343332221 1378889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHccCCH
Q 003829 683 YCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDG-YCKLNQR 759 (793)
Q Consensus 683 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 759 (793)
|.+.|++++|+..++++++ ..| +...|..++.+|...|++++|+..|+++++ +.|+ ...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 444 568899999999999999999999999986 3454 5666666665 3455778
Q ss_pred HHHHHHHHHHhhCCCCCCHH
Q 003829 760 YEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~~~~ 779 (793)
+++..+++++++..|+++..
T Consensus 316 ~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHhhCCCCCCCCC
Confidence 88999999999999886543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=90.51 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 003829 646 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLF 724 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 724 (793)
..+.+.|++++|++.++++++.. +.+...|..++.+|.+.|++++|.+.++++++. .| +...+..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34556777777777777777652 334667777777788888888888888888773 34 456777777788888888
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHccCCHHHHHHHHH
Q 003829 725 VEALDVVRYMIKQGCKP-NQNTYNSIVDG--YCKLNQRYEAITFVN 767 (793)
Q Consensus 725 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 767 (793)
++|++.++++++. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888887764 33 34455555555 677788888888877
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-06 Score=66.77 Aligned_cols=98 Identities=11% Similarity=-0.002 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 003829 637 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYNT 713 (793)
Q Consensus 637 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 713 (793)
+...+..+...+...|++++|...++++.+.. +.+...|..++.++...|++++|...++++++. .|+ ...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44556677777888888888888888888763 345677888888888888888888888888883 443 577888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc
Q 003829 714 FVASYAAD-SLFVEALDVVRYMIKQ 737 (793)
Q Consensus 714 l~~~~~~~-g~~~~A~~~~~~~~~~ 737 (793)
++.++... |++++|++.++++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=73.83 Aligned_cols=129 Identities=12% Similarity=0.037 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL----------------TTYNTLMYMYSRSENFARAEDVLREILAK 667 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 667 (793)
..+..+...+...|++++|...|++..+.. +.+. ..+..+..+|...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456677888999999999999999999863 2232 78888999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 003829 668 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL-DVVRYMIK 736 (793)
Q Consensus 668 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 736 (793)
. +.+...+..++.+|...|++++|.+.|+++++ +.| +..++..+..++...++.+++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 44678899999999999999999999999998 444 5677888888888887777766 55555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-05 Score=85.38 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=75.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD---------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL 704 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 704 (793)
.+..+...+.+.|++++|+..|+++++.. +.+ ...|..+..+|.+.|++++|+..++++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34444445555555555555555555431 111 35667777777777777777777777777322
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH-HHHHHHhhC
Q 003829 705 VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKL 772 (793)
Q Consensus 705 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 772 (793)
. +...|..++.+|...|++++|+..|+++++. .| +...+..+..++.+.|++++|. ..+++|...
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 4566777777777777777777777777763 44 3556667777777777766654 344444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.7e-06 Score=67.75 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=68.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYA 719 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 719 (793)
+..+...+.+.|++++|+..++++++.. +.+...|..+..++...|++++|...|+++++ +.| +...+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3345566777788888888888877752 33567777777788888888888888888877 444 4567777777888
Q ss_pred hcCChHHHHHHHHHHHH
Q 003829 720 ADSLFVEALDVVRYMIK 736 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~ 736 (793)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888888775
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-05 Score=83.00 Aligned_cols=160 Identities=11% Similarity=0.049 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN----------FARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
....++|++.++++.+.+ +.+..+|+.-..++...|+ ++++++.++++++.. +-+..+|..-.+++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344578899999999875 5677788877777777776 999999999999874 3478899999999999
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc------
Q 003829 686 NG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS-LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL------ 756 (793)
Q Consensus 686 ~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 756 (793)
.| ++++++++++++++.... +..+|+....++...| .++++++.++++++.+ .-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 99 779999999999995444 6788999999999999 8999999999999853 33688888888877763
Q ss_pred --------CCHHHHHHHHHHHhhCCCCCCHH
Q 003829 757 --------NQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 757 --------g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+++++|+++++++++.+|++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 66899999999999999997765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.8e-05 Score=79.49 Aligned_cols=168 Identities=7% Similarity=-0.077 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSL----TTYNTLMYMYSRSENFARAEDVLREILAK----GIKPD-II 674 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~ 674 (793)
.+..++..|...|++++|.+.+..+.+.- ..++. .+.+.+...+...|++++|..++++.... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 47788999999999999999999887531 11122 22344555566789999999999988742 22222 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--H
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDS--GL--VPD-VITYNTFVASYAADSLFVEALDVVRYMIKQ--GCK-P-N--Q 743 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-p-~--~ 743 (793)
++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999998762 22 222 367899999999999999999999998742 111 2 1 3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 744 NTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 744 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
..+..++..+...|++++|...+.++.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55677778888999999999999888764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-05 Score=64.80 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=71.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFV 715 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 715 (793)
.+...+...|++++|...|+++.+.. +.+. ..+..++.++...|++++|...|+++++. .|+ ...+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 45566778888888888888888752 2223 47777888888888999999888888873 333 56678888
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 003829 716 ASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.+|...|++++|+..++++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999999999888874
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=70.46 Aligned_cols=133 Identities=10% Similarity=-0.058 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC--C-CH
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAKG--IK--P-DI 673 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~-~~ 673 (793)
.++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..... .. + ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4677888889999999999999998876411 112 1367888899999999999999999987531 11 1 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..+..+..++...|++++|.+.+++..+. +..+ ....+..++..|...|++++|.+.+++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788889999999999999999998862 1111 135678899999999999999999999875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=79.82 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAK---------------GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 705 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 705 (793)
+..+...+.+.|++++|+..|+++++. .-+.+...|..+..+|.+.|++++|.+.++++++ ..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--ID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hC
Confidence 344445555555566655555555541 0012346777788888888888888888888887 34
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 003829 706 P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 706 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
| +...|..++.+|...|++++|++.++++++. .| +...+..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4577788888888888888888888888774 34 46677777777777777766654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.3e-06 Score=69.96 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003829 687 GRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSL----------FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYC 754 (793)
Q Consensus 687 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 754 (793)
+.+++|.+.+++.++ ..| +...|..++.++...|+ +++|+..|+++++. .|+ ...|..++.+|.
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 445555555555555 222 34555555555555544 34677777777663 443 566667777766
Q ss_pred ccC-----------CHHHHHHHHHHHhhCCCCC
Q 003829 755 KLN-----------QRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 755 ~~g-----------~~~~A~~~~~~~~~~~~~~ 776 (793)
..| ++++|+..|+++++++|++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 653 7777888888887777765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.4e-05 Score=65.98 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=71.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----
Q 003829 642 NTLMYMYSRSENFARAEDVLREILAKGIKPD-------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---- 704 (793)
Q Consensus 642 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 704 (793)
......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~ 90 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRR 90 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhcc
Confidence 34445566667777777777776654 222 23888899999999999999999999998 5
Q ss_pred ---CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 705 ---VPDV-ITY----NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 705 ---~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+. ..| ...+.++...|++++|+..|++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7765 677 8999999999999999999999986
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=84.75 Aligned_cols=188 Identities=10% Similarity=0.069 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 003829 574 EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQM----------VAKTNEILHFMNDSGFTPSLTTYNT 643 (793)
Q Consensus 574 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 643 (793)
..++|++.+++++.. -+.+..+|+.-..++.+.|+ +++++++++.+.+.. +-+..+|..
T Consensus 44 ~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345677777766531 13345677776666666666 899999999999876 678899999
Q ss_pred HHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 644 LMYMYSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 720 (793)
Q Consensus 644 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 720 (793)
-..++.+.| +++++++.++++.+.+ +-|...|+.-..++...| .+++++++++++++..+. |...|+....++..
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 888899999 7799999999999975 347889999999999999 899999999999985444 67888888888776
Q ss_pred c--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH------------HHHHHHHHhhCCC
Q 003829 721 D--------------SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYE------------AITFVNNLSKLDP 774 (793)
Q Consensus 721 ~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~~ 774 (793)
. +.+++|++.++++++.. +-|...|..+.+.+.+.|+.++ |+..|.++++.+|
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence 4 55799999999999853 3358899999999999888666 4444566665555
Q ss_pred C
Q 003829 775 H 775 (793)
Q Consensus 775 ~ 775 (793)
.
T Consensus 270 ~ 270 (567)
T 1dce_A 270 R 270 (567)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=69.56 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
...|..+..+|.+.|++++|...++++++ +.| +...|..++.+|...|++++|+..++++++. .|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 46788888899999999999999999988 444 4678889999999999999999999998874 454
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-05 Score=65.85 Aligned_cols=111 Identities=6% Similarity=-0.056 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEA 727 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 727 (793)
+++++|+..|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|+..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566666666666654 22222 5555555556666666666666643 45566666666666 6667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCC
Q 003829 728 LDVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 728 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 773 (793)
++++++..+.| +...+..|+..|.. .++.++|..+++++.+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777766643 45556666666666 667777777777776665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-06 Score=68.39 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003829 650 RSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 727 (793)
Q Consensus 650 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 727 (793)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|...|+++++.... +..++..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35677788888888877531 223567778888888888888888888888874322 457778888888888888888
Q ss_pred HHHHHHHHHc
Q 003829 728 LDVVRYMIKQ 737 (793)
Q Consensus 728 ~~~~~~~~~~ 737 (793)
+..++++++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00011 Score=77.31 Aligned_cols=171 Identities=9% Similarity=-0.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNE----LTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS 600 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 600 (793)
.+..+...|...|++++|.+.+..+..... .++. .+.+.+...+...|+++.+..+++.... .....+..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 131 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-----FAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-----HHHHSSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HHHHhCcc
Confidence 355677778888888888888877653210 1111 1222233334467889999998887654 22333333
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC-C
Q 003829 601 PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDS--GF---TPSLTTYNTLMYMYSRSENFARAEDVLREILAK--GIK-P 671 (793)
Q Consensus 601 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~ 671 (793)
+. ..++..++..|...|++++|..+++++... +. +....++..++..|...|++++|..++++.... ... |
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 33 567888999999999999999999887643 11 122456888899999999999999999988743 111 2
Q ss_pred -C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 672 -D--IISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 672 -~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
. ...+..++..+...|++++|...|.++.+
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 24566777778888999999999988875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-05 Score=82.85 Aligned_cols=124 Identities=9% Similarity=0.101 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----------------VITYNTFV 715 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~ 715 (793)
+++++|+..|+...... +-....|..+...|.+.|++++|...|+++++. .|+ ...|..++
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555665555444321 113567888999999999999999999999983 333 57899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 716 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 716 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++.+|++...
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999853 3358899999999999999999999999999999987654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.3e-05 Score=78.69 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------------GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 738 (793)
..+..+...+.+.|++++|.+.|+++++. ...| +...|..++.+|.+.|++++|++.++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 35777888999999999999999999871 0222 3478899999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 739 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 739 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
.| +...|..++.+|...|++++|+..++++++++|++...
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~ 343 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 45 58899999999999999999999999999999986544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=83.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003829 609 MISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR 688 (793)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 688 (793)
+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445678899999999999999874 5678899999999999999999999999999973 3457889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCChHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPD-VITYNTFVAS--YAADSLFVEALDVVR 732 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 732 (793)
+++|.+.|+++++. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999984 442 3455566665 888999999999998
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=79.81 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 717 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 717 (793)
...+..+...+.+.|++++|+..|++++.. .|+... +...|+++++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666667777777777787777777764 333321 122233333332221 1378899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 718 YAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 718 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|+..++++++.+|++...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999853 3358899999999999999999999999999999986554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-05 Score=63.55 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
+|...|+++++.... +...+..++.+|...|++++|+..++++++.. +.+...|..++.+|...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555552221 34555566666666666666666666665532 2235555666666666666666666666666
Q ss_pred hCCCC
Q 003829 771 KLDPH 775 (793)
Q Consensus 771 ~~~~~ 775 (793)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 65543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=7.8e-06 Score=66.80 Aligned_cols=92 Identities=8% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QN 744 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 744 (793)
...|..++..+...|++++|.+.|+++++. .| +...+..++.+|...|++++|++.++++++. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 445566666666666677777666666663 33 4456666666666777777777777766653 333 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 003829 745 TYNSIVDGYCKLNQRYEAITFVNN 768 (793)
Q Consensus 745 ~~~~l~~~~~~~g~~~~A~~~~~~ 768 (793)
.+..++.++...|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555556666665555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.1e-05 Score=80.44 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=68.8
Q ss_pred HccCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHH
Q 003829 649 SRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTF 714 (793)
Q Consensus 649 ~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l 714 (793)
...|++++|+.++++.++. -+.++ ..+++.|+.+|...|++++|..+++++++ .|. .|+. .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555555432 01111 34566666666666666666666666653 122 2232 456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 715 VASYAADSLFVEALDVVRYMIK-----QGC-KPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+..|...|++++|..+++++++ .|- .|+ ..+...+..++...|++++|..+++++.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666666653 221 122 344455666666667777777777666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00032 Score=59.65 Aligned_cols=111 Identities=10% Similarity=-0.076 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEA 692 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 692 (793)
+++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 33333 7777888888999999999999875 77888899999988 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQG 738 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 738 (793)
.++|++..+.| +...+..|+..|.. .+++++|++++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999964 57788899999998 899999999999999876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=59.83 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 708 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 708 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
...+..++.+|...|++++|+..++++++.+ +.+...|..++.+|.+.|++++|+..++++++..|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3455555556666666666666666655532 11345555566666666666666666666655544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=4.8e-05 Score=64.94 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR----------MKEASRIFSEMRDSGLVPD-VITYNTFVASYAA 720 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 720 (793)
+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|+++++ +.|+ ..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH
Confidence 44566666666666542 2345566666666665554 3477777777777 5553 4677777777776
Q ss_pred cC-----------ChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 721 DS-----------LFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 721 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.| ++++|++.|+++++ +.|+...|
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 64 78888888888887 45664444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00026 Score=57.40 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 003829 707 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 776 (793)
+...+..++..+...|++++|++.++++++.. +.+...+..++.+|.+.|++++|+..++++++.+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45678889999999999999999999999852 3358889999999999999999999999999999987
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00026 Score=74.41 Aligned_cols=125 Identities=8% Similarity=0.007 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 003829 612 IYGRRQMVAKTNEILHFMNDS---GFTP----SLTTYNTLMYMYSRSENFARAEDVLREILAK-----G-IKPD-IISYN 677 (793)
Q Consensus 612 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 677 (793)
.+..+|++++|+.++++.++. -+.+ ...+++.|+.+|...|++++|+.++++.+.. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887753 1112 2456899999999999999999999988742 2 1122 46789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRD-----SGLV-PDV-ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+..|...|++++|..+++++++ .|.. |+. .+...+..++...|++++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 3432 332 5567888888899999999999999976
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00054 Score=53.04 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
.+..++..+...|++++|+..++++++.. +.+...+..++.++.+.|++++|...++++++.+|+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34444444444444444444444444421 112444444444444445555555555554444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00051 Score=56.23 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 656 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYM 734 (793)
Q Consensus 656 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 734 (793)
+|+..|+++.+.. +.+...+..++.+|...|++++|...|+++++. .| +...|..++.+|...|++++|+..++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555666666542 334566666677777777777777777777663 33 3456666777777777777777777776
Q ss_pred HH
Q 003829 735 IK 736 (793)
Q Consensus 735 ~~ 736 (793)
++
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00089 Score=65.90 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHH--cc---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---C-----CHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYS--RS---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRN---G-----RMKEASRIFSEMR 700 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g-----~~~~A~~~~~~~~ 700 (793)
+.+...|..++.+.. .. .+..+|+.+|+++++. .|+ ...|..+..+|... + ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 455556655554432 22 2356777777777775 444 34444444444211 1 1111111222222
Q ss_pred HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 701 DSGL-VPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 701 ~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
.... ..+..+|..+...+...|++++|+..++++++.+ |+...|..++..+.-.|+.++|.+.+++++.++|.+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 2111 3366788888777777799999999999998864 7777778888888899999999999999999988754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0017 Score=50.13 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 251 (793)
+..++..+...+...|++++|...++......+. +..++..+..++.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 4456666777777788888888888877765433 667777777788888888888888887776642 25556666655
Q ss_pred HHHh
Q 003829 252 VYGK 255 (793)
Q Consensus 252 ~~~~ 255 (793)
.+.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=56.23 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRDSGLVP-DVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCK 755 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 755 (793)
.+..+...|++++|.+.|+++++ ..| +.. .+..++.+|...|++++|++.++++++. .|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 34556666777777777777766 333 345 6666777777777777777777777663 333 333211
Q ss_pred cCCHHHHHHHHHHHhhCCCCC
Q 003829 756 LNQRYEAITFVNNLSKLDPHV 776 (793)
Q Consensus 756 ~g~~~~A~~~~~~~~~~~~~~ 776 (793)
+.+.+|...++++.+.+|++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 45566666666666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0009 Score=52.85 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=59.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIKQGCKPNQN-TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 781 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 781 (793)
..+..+...|++++|+..++++++.. +.+.. .+..++.+|...|++++|+..++++++.+|++....+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999999999999853 33567 8999999999999999999999999999999887653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00066 Score=57.18 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 763 (793)
...+.+.|.+..+.|. ++..+...+++++++++ +.++++.++++..+.+ .| ..+.+..|+-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666777766555 57788888888888888 5668899999888753 24 3566677788888999999999
Q ss_pred HHHHHHhhCCCCCCHH
Q 003829 764 TFVNNLSKLDPHVTKE 779 (793)
Q Consensus 764 ~~~~~~~~~~~~~~~~ 779 (793)
++++.+++.+|++...
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00072 Score=53.60 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+...+..++.+|...|++++|.+.|+++++.... +...|..++.+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666777777777777776663221 345666666777777777777777766654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00072 Score=69.74 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHH---CCCCC---CH-HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHHHHHHH
Q 003829 686 NGRMKEASRIFSEMRD---SGLVP---DV-ITYNTFVASYAADSLFVEALDVVRYMIK-----QG-CKPN-QNTYNSIVD 751 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~---~~~~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~~ 751 (793)
.|++++|..++++.++ .-+.| +. .+++.|+.+|...|++++|+.+++++++ .| -.|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3566777777776664 11222 22 5677777777777777777777777663 22 1233 456777888
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 003829 752 GYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~~A~~~~~~~~~~ 772 (793)
.|..+|++++|..+++++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888888888888888877764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0023 Score=66.07 Aligned_cols=92 Identities=9% Similarity=-0.091 Sum_probs=64.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDS---GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIK-----QG-CKPN-QNTY 746 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~ 746 (793)
..+...|++++|+.+++++++. -+.|+. .+++.++.+|...|++++|+.+++++++ .| ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455677888888888888752 122221 5678888888888888888888887764 22 1233 4567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 747 NSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 747 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
+.|+..|..+|++++|..+++++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 78888888888888888888887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0045 Score=60.98 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---C--CHHHH---HHHHHHHH
Q 003829 599 FSPDIPTLNAMISIYG--RR---QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---E--NFARA---EDVLREIL 665 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~~~~A---~~~~~~~~ 665 (793)
.+.+...|...+++.. .. ....+|..+|++..+.. |.....|..+..+|... + ..... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3556667777666543 33 34688999999999874 44556666555554311 1 11111 11222211
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003829 666 AK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 744 (793)
Q Consensus 666 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 744 (793)
.. ..+.+..+|..+...+...|++++|...+++++.. .|+...|..++..+.-.|++++|++.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 11 12456788888888888889999999999999994 57888888999999999999999999999998 467777
Q ss_pred HHHHHH
Q 003829 745 TYNSIV 750 (793)
Q Consensus 745 ~~~~l~ 750 (793)
+|...-
T Consensus 345 t~~~~~ 350 (372)
T 3ly7_A 345 TLYWIE 350 (372)
T ss_dssp HHHHHH
T ss_pred hHHHHh
Confidence 765433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0021 Score=49.75 Aligned_cols=67 Identities=12% Similarity=-0.039 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 707 DVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 707 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+...+..++.++...++ .++|..+++++++. .| +......++..+.+.|++++|+.+|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55667777777654444 67888888888774 44 3677777777788888888888888888888776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0023 Score=50.99 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQG------CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+..++..+...|+++.|+..++.+++.- -.+...++..|+.++.+.|++++|..+++++++..|++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3445555555555555555555554320 0112445555666666666666666666666666665433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.004 Score=64.20 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 003829 651 SENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTFVA 716 (793)
Q Consensus 651 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~ 716 (793)
.|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|..+++++++ .|. .|+. .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776642 12222 45788888888888899988888888875 232 3443 67889999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003829 717 SYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.011 Score=61.14 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-HHH
Q 003829 646 YMYSRSENFARAEDVLREILAKG---IKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITY 711 (793)
Q Consensus 646 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~ 711 (793)
..+...|++++|+.++++.+... +.++ ..+++.++.+|...|++++|+.+++++++ .|. .|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34556788999999999888531 2222 45788899999999999999999998885 232 3443 678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 712 NTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 712 ~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
+.|+..|...|++++|..+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999874
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0095 Score=56.03 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-C
Q 003829 689 MKEASRIFSEMRDSGLVPD---VITYNTFVASYAAD-----SLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKL-N 757 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 757 (793)
...|...++++++ +.|+ -..|..++..|... |+.++|.+.|+++++. .| +..++..+++.+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 4556666666666 5555 24566666666663 6677777777777663 34 255666666666663 6
Q ss_pred CHHHHHHHHHHHhhCCCC
Q 003829 758 QRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~~ 775 (793)
+.++|..++++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 677777777777776666
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0072 Score=48.83 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE---ALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEA 762 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 762 (793)
....+.+-|.+....|. ++..+--.+++++.++.+..+ ++.+++...+.+ .| .....-.|+-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34555666666665444 577777888889998887655 888888887653 23 245556778889999999999
Q ss_pred HHHHHHHhhCCCCCCHH-HHHHHHH
Q 003829 763 ITFVNNLSKLDPHVTKE-LECKLSD 786 (793)
Q Consensus 763 ~~~~~~~~~~~~~~~~~-~~~~l~~ 786 (793)
+.+++.+++..|++... ....+|.
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999987554 4444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.016 Score=48.84 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003829 619 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 619 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
...+.+.|.+..+.+ +++..+.-.+..++++.+ ++++++.+++++.+.+ .| +...+..+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555544 356666666666666666 4557777777776653 23 2445555666667777777777
Q ss_pred HHHHHHHHCCCCCC
Q 003829 694 RIFSEMRDSGLVPD 707 (793)
Q Consensus 694 ~~~~~~~~~~~~p~ 707 (793)
++++.+++ +.|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 77777776 5553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.096 Score=59.88 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=72.2
Q ss_pred HhcCChHHHHH-HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 325 GKCRRPKEAMQ-VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 325 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 403 (793)
...+++++|.+ ++..+ + +......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777766 44221 1 12223566667777777777776653211 112334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 003829 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481 (793)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 481 (793)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 7775433 3567788888888888888888888876542 3334444444555554444433333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.019 Score=44.24 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 671 PDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
.|...+..+..++...++ .++|..+++++++ ..| +......++..+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666666666654444 5777777777777 334 4566677777777777777777777777764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.045 Score=44.27 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 703 GLVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 703 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
+-.|+..+--.+++++.++.+ ..+++.+++++.+.+..-....+-.|+-++.+.|++++|+.+.+.+++..|++...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 455677777888889998876 45689999998875411125666788889999999999999999999999998665
Q ss_pred -HHHHHH
Q 003829 780 -LECKLS 785 (793)
Q Consensus 780 -~~~~l~ 785 (793)
....+|
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 344444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.08 Score=43.77 Aligned_cols=53 Identities=8% Similarity=-0.148 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 722 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 722 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
++.++|.++|+.+++.+ +.=+.+|...++.-.++|+.+.|++++.+++.++|.
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665431 111555556666666666666666666666666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.036 Score=43.88 Aligned_cols=69 Identities=6% Similarity=-0.030 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 672 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
+......++..+...|+++.|..+|+++++.- -.+...++..|+.+|.+.|++++|+.+++++++ +.|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 44455677778888888888888888877621 112346788888888888888888888888887 3554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.13 Score=42.28 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH-
Q 003829 704 LVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE- 779 (793)
Q Consensus 704 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 779 (793)
-.|+..+--.+++++.++.+ ..+++.+++.+.+.+..-.....-.|+-++.+.|++++|+++.+.+++..|++...
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 35677777888888988876 45688889988875322124555677888999999999999999999999988554
Q ss_pred HHHHHHH
Q 003829 780 LECKLSD 786 (793)
Q Consensus 780 ~~~~l~~ 786 (793)
....+|.
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.12 Score=44.67 Aligned_cols=127 Identities=10% Similarity=0.041 Sum_probs=85.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 692 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 692 (793)
....|+++.|.++.+.+ .+...|..|.......|+++-|+..|++... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 35678899988887664 4788899999999999999999888887642 33455556667887777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
.++-+.....|- ++....++.-.|+++++++++.+.- --|.+..+ ....|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG---SLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 766666655432 4455556677899999988886542 12221111 12346677777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.33 Score=55.35 Aligned_cols=28 Identities=11% Similarity=-0.165 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 602 DIPTLNAMISIYGRRQMVAKTNEILHFM 629 (793)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 629 (793)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555555666666655555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.11 Score=43.00 Aligned_cols=114 Identities=9% Similarity=0.101 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHccCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHH--H-HHHHcCCHHHHHHHHHHHHH
Q 003829 635 TPSLTTYNTLMYMYSRSENF------ARAEDVLREILAKGIKPDII----SYNTVI--F-AYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 635 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~----~~~~l~--~-~~~~~g~~~~A~~~~~~~~~ 701 (793)
+.|..+|-..+....+.|+. ++.+++|+++... ++|+.. .|..+. . .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44666666666666666776 7777788877765 555421 111111 0 12344788889999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 702 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 702 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
....- ..+|...+..-.++|++++|.+++.+.+..+.. +.......+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 42222 677777777778889999999999998876533 3444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.61 Score=40.33 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=54.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 403 (793)
..+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666666554 1455666666666666666666666665442 33444445555666555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003829 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDE 444 (793)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 444 (793)
..+-+.....| + ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55544444433 1 23333444455666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.069 Score=50.32 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 003829 654 FARAEDVLREILAKGIKPD---IISYNTVIFAYCRN-----GRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAAD-S 722 (793)
Q Consensus 654 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 722 (793)
..+|...++++++. .|+ -..|..++..|... |+.++|.++|+++++ +.| +..++..++..++.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 56778888888874 555 45777888888774 888999999999888 555 367777888888874 8
Q ss_pred ChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMIKQGCK--PNQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
+.++|.+.+++.+..... |+....+. +..++|..++.++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 888889999988875444 44333332 2344565555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.58 E-value=1.6e-06 Score=86.20 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003829 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLI 286 (793)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 286 (793)
.+.+|..|+.+..+.|+..+|++-|-+. -|...|..++....+.| .+++-+.++....+..- +...=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 4568888999999888888887766332 26667888888888888 78888877776655422 344455677
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003829 287 SCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLE 366 (793)
Q Consensus 287 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 366 (793)
-+|++.++..+-++++ ..||..-...+.+-|...|.++.|.-+|..+ .-|..|...+++.|++.
T Consensus 124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHH
Confidence 7788877765533322 1356666667777788888888777766544 22445566677778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 367 EAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEIN 446 (793)
Q Consensus 367 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 446 (793)
+|.+.-++. -+..||..+-.+|...+.+.-|.-.--.++-.. | -...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 776553322 245678888888888887776644433333211 1 12345666778888888888887765
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 003829 447 KCNCKPDIVTWNTLLAVFGQNGMDSEVSGV 476 (793)
Q Consensus 447 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 476 (793)
... ......|+.|.-.|++- ++++..+.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 321 33456666666666654 33443333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.37 E-value=4.7 Score=45.20 Aligned_cols=26 Identities=12% Similarity=-0.240 Sum_probs=17.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhc
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSC 162 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 162 (793)
+.+-+.+...|.+++|+.+--..-..
T Consensus 74 lvaSkvyy~Lg~~~~al~yaL~aG~~ 99 (963)
T 4ady_A 74 LIASKVYYNLGEYESAVKYALAAKDR 99 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHGGG
T ss_pred HHHHHHheeccchHHHHHHHHhCCCc
Confidence 33345566679999998887776553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=1.1 Score=36.25 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
-.|.+++..++..+.... .+..-||-++--....-+-+-..++++.+=+. + |. ...|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHHH
Confidence 357777777777777653 24444444444333333444444444433221 1 11 23344444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
.+-.+- -+....+..+..+...|+-++-.+++..++. +.+|++.....++.+|.+.|+..+|.++++++-+.|.
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443221 1345556667777888888888888888644 3467788888888888888888888888888888875
Q ss_pred C
Q 003829 775 H 775 (793)
Q Consensus 775 ~ 775 (793)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.1 Score=42.16 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 636 PSLTTYNTLMYMYSRSENFAR---AEDVLREILAKGIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++..+--.+..++.+..+... ++.+++++.+.+ .| .......+.-++.+.|++++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445544443333 555555544432 11 122233344445555555555555555555
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.76 E-value=3.7 Score=42.36 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003829 147 KKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYRE 226 (793)
Q Consensus 147 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (793)
+++..|++-+..+.+..+...+...+..+...++..|...|+++...+.+..+.+.... ...+-..+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~-------- 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV-------- 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH--------
Confidence 56777777776665433334455567788888889999999988887776655443222 222333333322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003829 227 AVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKP---DSYTFNTLISCCRRGSLHEEAAGVFE 303 (793)
Q Consensus 227 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~ 303 (793)
..++... ..++..+...++....... +..+-. .......|...+...|++.+|..++.
T Consensus 101 -~~~l~~~----~~~d~~~~~~~i~~l~~vt--------------e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~ 161 (445)
T 4b4t_P 101 -MEYLKSS----KSLDLNTRISVIETIRVVT--------------ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILC 161 (445)
T ss_dssp -HHHHHHH----CTTHHHHHHHHHHCCSSSS--------------SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -HHHHhcC----CchhHHHHHHHHHHHHHHh--------------ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2222222 1123333333333221110 000000 01122345566777788888888888
Q ss_pred HHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCh--hHHHHHHHHHHhcCCHHHHHHHH
Q 003829 304 EMKLA--GFSPD---KVTYNALLDVYGKCRRPKEAMQVLREMKI----NGCLPSI--VTYNSLISAYARDGLLEEAMELK 372 (793)
Q Consensus 304 ~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~ 372 (793)
++... |.... +..|...++.|...+++..|..++.++.. ....|+. ..+..++..+...+++.+|...|
T Consensus 162 ~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 162 ELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77532 21111 23555667788888888888888877632 1222222 24566677777788888887777
Q ss_pred HHHHH
Q 003829 373 TQMVE 377 (793)
Q Consensus 373 ~~m~~ 377 (793)
.+..+
T Consensus 242 ~e~~~ 246 (445)
T 4b4t_P 242 QEIYQ 246 (445)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.40 E-value=2.6 Score=34.10 Aligned_cols=141 Identities=12% Similarity=0.151 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (793)
+.-.|.+++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 334566667777666666532 4455555555555555545444444444221 111 233444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
...+-.+- .+....+..+..+...|.-++-.+++.++.. +..|+......+..+|.+.|+..+|.+++.++-++
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44333321 2344445555666666666666666666443 23456666666667777777777777776666666
Q ss_pred CCC
Q 003829 519 GVT 521 (793)
Q Consensus 519 ~~~ 521 (793)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.24 E-value=3.3 Score=41.45 Aligned_cols=169 Identities=8% Similarity=-0.029 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTP---SLTTYNTLMYMYSRS-ENFARAEDVLREILAKGIKPDIISY-- 676 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~-- 676 (793)
.....|+..|.+.|+.++..+++...... +.-+ .......+++.+... +..+.-.++..+.++.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35667888899999999999988876542 1111 233466778777653 44555555555555321 1122233
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHH
Q 003829 677 ----NTVIFAYCRNGRMKEASRIFSEMRDS--GLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQ--GCKPNQNT 745 (793)
Q Consensus 677 ----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~ 745 (793)
.-++..|...|++.+|.+++.++.+. ...... .+|..-+..|...|++.++...+.++... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788899999999999999999873 222111 56777788899999999999999888642 23234332
Q ss_pred H----HHHHHHHH-ccCCHHHHHHHHHHHhhCC
Q 003829 746 Y----NSIVDGYC-KLNQRYEAITFVNNLSKLD 773 (793)
Q Consensus 746 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 773 (793)
. ..-+-.+. ..+++.+|...|-++.+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 2 22333466 7899999999998887553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.62 Score=51.04 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCCC-CHH--
Q 003829 211 YTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVKP-DSY-- 280 (793)
Q Consensus 211 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------~~~p-~~~-- 280 (793)
...++..+...|+ ++.|+.+|+++.+..+.-+......++..+.+.+..--+|..++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444444445566 58899999998887432222223334444444332234455555444321 1111 110
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 281 --------TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (793)
Q Consensus 281 --------~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 340 (793)
....-...|...|+++.|+++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111222344555555555555555441 223445555555555555555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.96 E-value=2.6 Score=34.65 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 671 PDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 671 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
++..+--.+.+++.++.+ ..++..+++.+.+.+..-.......|+-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555443 234455555555422211123334444455555555555555555555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.81 E-value=1.2 Score=36.09 Aligned_cols=67 Identities=7% Similarity=0.011 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 670 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 670 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.|+..+--.+.+++.++.+ ..++..+++.+.+.+..-....+..|+-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555555555555543 334555555555532111124444555556666666666666666655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.59 E-value=10 Score=36.48 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=11.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh
Q 003829 232 KKMEEEGCKPTLITYNVILNVYGK 255 (793)
Q Consensus 232 ~~~~~~~~~p~~~~~~~ll~~~~~ 255 (793)
+.+.+.+.+++......++..+..
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333344555555555555555444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=17 Score=39.06 Aligned_cols=134 Identities=7% Similarity=-0.013 Sum_probs=60.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHH
Q 003829 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD-IVTWNTLLAVFGQNGMDSEV 473 (793)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 473 (793)
.+.|+++.+..+...+...-+ .....|..+.... .....++....+.+... .|- ...-+..+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHH
Confidence 345777766666555432211 1111222222211 22244444444443211 111 12223344555556666555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 474 SGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 474 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
...+.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|.
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence 543321 1224444444555666667666666655555544432 34455555555555444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.42 E-value=7.5 Score=40.00 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----HccCCHHH--HHHHHHHHHH--CC-
Q 003829 599 FSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMY----SRSENFAR--AEDVLREILA--KG- 668 (793)
Q Consensus 599 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~~g~~~~--A~~~~~~~~~--~~- 668 (793)
..........++..|...|+++...+.+..+.+. |.. ......++..+ ....+.+. -..+.+.+.. .|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 4445677888888899999999888877766643 322 22223333322 22222221 1112211110 01
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 003829 669 IKP---DIISYNTVIFAYCRNGRMKEASRIFSEMRD--SGLVPD---VITYNTFVASYAADSLFVEALDVVRYMIK---- 736 (793)
Q Consensus 669 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 736 (793)
+-. .......|...|...|++.+|.++++++.. .|.... ...+..-++.|...+++.+|..+++++..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 123345677888999999999999999875 233222 25677778888999999999999888742
Q ss_pred cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 003829 737 QGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKL 772 (793)
Q Consensus 737 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 772 (793)
....|+ ...+...+..+...+++.+|...|.++.+.
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 222222 344567777788889999999888888764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.48 E-value=1.4 Score=33.45 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
.=+.++-++.+...++.|++.+..+.+++|.+.+++..|+++++-...+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3455666666666777777777777777777777777777777777654 3333455666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.44 E-value=1.6 Score=47.81 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 003829 717 SYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLS 770 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 770 (793)
.|...|+++-|+++.++++. +.|+ ..+|..|+.+|.+.|+++.|.-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44556777777777777766 3443 6777777777777777777777777664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.43 E-value=2e-05 Score=78.59 Aligned_cols=262 Identities=12% Similarity=0.137 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003829 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (793)
Q Consensus 454 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (793)
+..|..|..++...++..+|++.|- +. -|...|..++....+.|.+++-.+++....+..- +...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4556667777666666666655431 11 2445566666666666666666666655544422 33333456666
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003829 534 LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIY 613 (793)
Q Consensus 534 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (793)
|++.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|.. +.-|..|..++
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~------------------isN~akLAstL 180 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN------------------VSNFGRLASTL 180 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG------------------SCCCTTTSSSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh------------------CccHHHHHHHH
Confidence 66666654433222 134555555666666666666665544431 11233444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003829 614 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 693 (793)
Q Consensus 614 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 693 (793)
.+.|++..|.+.-++ ..++.||..+-.+|...+.+.-|...--.++- .+| ....++.-|...|.+++-.
T Consensus 181 V~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 181 VHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELI 249 (624)
T ss_dssp SSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHH
Confidence 555666655443222 34566777777778877777766555444442 222 1224456677778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003829 694 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVN 767 (793)
Q Consensus 694 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 767 (793)
.+++..+.. -.....+|+-|+-.|++- +.++-.+.++.... +.| .-.++.+|.+..-+.|++-++.
T Consensus 250 sLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 250 TMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp TTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 877777642 122456777777777655 34555555544322 111 1134667777777777766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.99 E-value=29 Score=39.04 Aligned_cols=266 Identities=12% Similarity=0.010 Sum_probs=143.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 003829 462 AVFGQNGMDSEVSGVFKEMKRAGFIPE--RDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV-------TPDLSTYNAVLA 532 (793)
Q Consensus 462 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 532 (793)
-+....|+.++++.++......+...+ ...-..+.-+....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667888888777766554211112 22333444455666666677877777665311 011222233333
Q ss_pred HHHhcCC-hHHHHHHHHHHhcCCCCCCHhhHH--HHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHH
Q 003829 533 ALARGGM-WEQSEKIFAEMKGGRCKPNELTYS--SLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM 609 (793)
Q Consensus 533 ~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 609 (793)
++.-.|. -+++.+.+..+.... ........ ++...+.-.|+.+....++..+. +. ...+..-+..+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---------e~-~~e~vrR~aal 530 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---------ET-QHGNITRGLAV 530 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------HC-SCHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---------cc-CcHHHHHHHHH
Confidence 4433342 356667776666432 11111112 23333456677666555544322 21 11122233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTT-YN---TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
.-++...|+.+.+..+++.+... .+..+ |. ++.-+|+-.|+.....+++..+... ...+......+.-++..
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred HHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhc
Confidence 44455778888888888888764 23333 32 3445677888988888899988874 22234444444455566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-FVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.|+.+.+.++++.+.+.+ .|....-..++-+....|+ ..+|++.+..+.. .+|..+-
T Consensus 607 ~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp SSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 777777777777666642 3333333333334444454 3678999999874 4454443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.57 E-value=1.1 Score=38.03 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-HHHHH
Q 003829 644 LMYMYSRSENFARAEDVLREILAKG-IKPD-------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDV-ITYNT 713 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~-~~~~~ 713 (793)
-+..+...|.++.|+-+.+.+.... ..++ ..++..+++++...|++..|...|+++++.. .-+.. ..+..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3445566677777777766655321 1222 1245566677777777777777777765421 11111 11111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 003829 714 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 714 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 775 (793)
+. ....... ......+.+.-..+..+|.+.|+.++|+.+++.+......
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 10 0000000 0012223455566888999999999999999887655443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=3.5 Score=41.63 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHHH
Q 003829 676 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNTYN 747 (793)
Q Consensus 676 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 747 (793)
...++.++...|++++|...+..+.. ..| +...+..++.+|...|+..+|++.|+++. +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34566677788888888888888877 444 56778888888888888888888888764 358888766543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.56 E-value=15 Score=34.04 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
..+.|++++|++....-++.. +-|...-..++..+|-.|+|+.|.+-++.+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666666552 33555555666666666666666666666666
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.55 E-value=6.1 Score=29.82 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
....++|..+-+.+...|. ...+--.-+..+...|+|++|..+.+.+ +.||.+.|.+|... +.|..+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHH
Confidence 4567888888888887653 1111112244567889999999888776 68888888877544 67888888887
Q ss_pred HHHHHHcC
Q 003829 372 KTQMVEIG 379 (793)
Q Consensus 372 ~~~m~~~g 379 (793)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 77777665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.29 E-value=4.7 Score=34.18 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=48.7
Q ss_pred ccHHHHHHHhccCCChHHHHHHHHHHHhccCCCCCc---cchHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003829 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNL---VLRGSVIAVLISMLGKEGKVSVAASLLHGLHK 201 (793)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 201 (793)
+.+..-++.+...+.++.|.-+...+......+++. .....++..+.+++...|+|..|...|+++++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 456667777788889998888888765422222221 11334788889999999999999999998643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.27 E-value=26 Score=35.07 Aligned_cols=91 Identities=12% Similarity=-0.083 Sum_probs=46.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhHH----H
Q 003829 285 LISCCRRGSLHEEAAGVFEEMKLAGFSPD-----KVTYNALLDVYGKCRRPKEAMQVLREMKIN--GCLPSIVTY----N 353 (793)
Q Consensus 285 l~~~~~~~~~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~----~ 353 (793)
++..|...|++.+|..++.++.+.--..| ..+|-.-+..|...+++.++...+...... .+.+++... .
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 45556666777777666666654210111 223444456666777777777666665432 121222211 1
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHH
Q 003829 354 SLISAYA-RDGLLEEAMELKTQM 375 (793)
Q Consensus 354 ~li~~~~-~~g~~~~A~~~~~~m 375 (793)
.-...+. ..+++++|...|-+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHH
Confidence 1122344 566777776666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=3.6 Score=41.57 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 003829 210 AYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKS-----AGVKPDSYTFNT 284 (793)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~-----~~~~p~~~~~~~ 284 (793)
+...++..+...|++++|+..+..+.... +-+...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34455666666777777777666666553 336666777777777777 66777777766533 366666654433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.91 E-value=23 Score=34.23 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 003829 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK----TQMVEIGITPDVFTYTTLLS 392 (793)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~li~ 392 (793)
|.++..-|.+.+++++|++++..- ...+.+.|+...|.++. +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566678889999998887654 23455667766655554 44556677788777777777
Q ss_pred HHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003829 393 GFEKAGKDE-SAMKVFEEMR----SAG--CKPNICTFNALIKMHGNRGNFVEMMKVF 442 (793)
Q Consensus 393 ~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (793)
.+.....-+ .=..++++++ +.| ..-|......+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 766544321 1122333332 112 2346777788888888888888887776
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.80 E-value=2.9 Score=33.66 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 691 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 691 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
+..+-++.+...++.|++.+....+.+|.+.+++..|+++++-.+.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555666666777788888888888888888888888888877654 3444556666654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.46 E-value=25 Score=34.06 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMV----FKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
+.+.+++++|.+++.+-. ..+.+.|+...|.++ .+.+.+.++++|......++..+.....
T Consensus 45 y~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 345677777766654321 123344554443333 3444455666666666666666655441
Q ss_pred CHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSA----G--VKPDSYTFNTLISCCRRGSLHEEAAGVF 302 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 302 (793)
....-..+++++++. | ..-|......+...|.+.+++.+|+..|
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 111222233333221 1 1223444444455555555555555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.39 E-value=5.9 Score=29.86 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003829 292 GSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMEL 371 (793)
Q Consensus 292 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 371 (793)
....++|..+-+.+...|. ...+--.-+..+...|+|++|..+.+.+ +.||.+.|.+|.. .+.|..+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3567888888888887653 1111112244567889999998888776 6888888887654 477888888888
Q ss_pred HHHHHHcC
Q 003829 372 KTQMVEIG 379 (793)
Q Consensus 372 ~~~m~~~g 379 (793)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 87777766
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.30 E-value=24 Score=33.83 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 003829 491 TFNTLISAYSRCGSFDQAMSIYKR 514 (793)
Q Consensus 491 ~~~~l~~~~~~~g~~~~a~~~~~~ 514 (793)
.|.++..-|.+.+++++|.+++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444455555556666666555433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.81 E-value=2.1 Score=39.68 Aligned_cols=54 Identities=19% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 682 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 682 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...+.|++++|+.....-++.... |...-..|+..+|-.|++++|.+.++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344566777777776666664332 555566666777777777777777776665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.50 E-value=9.9 Score=44.79 Aligned_cols=88 Identities=10% Similarity=0.091 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHH
Q 003829 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (793)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 565 (793)
.-|..++..+.+.+.++.+.++-..+++....-+. ..|..+...+...|++++|...+-.+.+.. --...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 45677777888888888888887777664322222 257778888889999999998888776542 234566667
Q ss_pred HHHHHcCCCHHHHH
Q 003829 566 LHAYANGREIDQML 579 (793)
Q Consensus 566 ~~~~~~~~~~~~a~ 579 (793)
+..++..+..+.-+
T Consensus 978 V~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 978 VNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHhCCChhhhh
Confidence 77777666665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.21 E-value=14 Score=43.47 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003829 137 LGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGL 199 (793)
Q Consensus 137 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 199 (793)
..++..+...+.++.|.++..|... ++....+++.++...|++++|.+.|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~----------~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS----------DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC----------CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC----------CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666677777778777766533 3334467788888999999999999865
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.09 E-value=12 Score=28.46 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 681 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 681 (793)
+.-+..+-++.+...++-|++.+....+.+|.+.+++.-|.++++-+..+ +.....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45566667777777777888888888888888888888888888877754 2333445665553
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.64 E-value=13 Score=32.78 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003829 686 NGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 742 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 742 (793)
.++..++.++|..|...|+.-. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788899999988776543 46778888888888999999999999888777774
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.11 E-value=5.2 Score=40.99 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH--HHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKGIK--PDIISYNTVIFAYCRNGRMKEASRIFSEMRD---SGLVPDVI--TYN 712 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~--~~~ 712 (793)
+...++..|.+.|++++|.+.+.++...... --...+...+..+...+++..+...++++.. .+..|+.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556778888888888888888888754222 2245667777788888888888888888764 23333321 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003829 713 TFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 713 ~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
.-+..+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222334466778888777777654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.08 E-value=6.3 Score=34.67 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003829 635 TPSLTTYN---TLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 706 (793)
Q Consensus 635 ~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 706 (793)
..|+.-.. .+++.+ ..++..++.++|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45655433 333333 25557899999999998876544 5678888889999999999999999999987777
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.40 E-value=11 Score=38.65 Aligned_cols=99 Identities=8% Similarity=-0.032 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 003829 604 PTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK---GIKPDIIS--Y 676 (793)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~ 676 (793)
.+...++..|.+.|++++|.+.|.++... +...-...+-.++..+...+++..+...++++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46788999999999999999999999875 33344566788889999999999999999998643 22333221 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDS 702 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 702 (793)
..-+..+...+++.+|...|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12223345678999999999887763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 793 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 1e-08
Identities = 46/343 (13%), Positives = 112/343 (32%), Gaps = 14/343 (4%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266
+ L + + R + ++ P L + G + ++
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEA---YSNLGNVYKERGQLQEA 86
Query: 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326
+E + A + + + + V + ++PD + L K
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPD-VF 385
E + I V +++L + G + A+ + V + P+ +
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLD 204
Query: 386 TYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445
Y L + ++A + A+ + S + N L ++ +G + +
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRA 263
Query: 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSF 505
+ + L + G +E + R D+ N L + G+
Sbjct: 264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNI 321
Query: 506 DQAMSIYKRMLEAGVTPDLSTYNAVLA-ALARGGMWEQSEKIF 547
++A+ +Y++ LE V P+ + ++ LA L + G +++ +
Sbjct: 322 EEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHY 362
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 37/289 (12%), Positives = 81/289 (28%), Gaps = 39/289 (13%)
Query: 229 MVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISC 288
+ + Y V ++ + A +K+ +P+ + + C
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPS 348
A E + Y L +V + R A+
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236
Query: 349 IVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFE 408
V + +L Y GL++ A++ + +E+ Y L + ++ G A +
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 409 EMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNG 468
C + + N L + +GN E ++++ + + P+
Sbjct: 296 TA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFA------------- 339
Query: 469 MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517
+ L S + G +A+ YK +
Sbjct: 340 ---------------------AAHSNLASVLQQQGKLQEALMHYKEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 3e-05
Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 7/173 (4%)
Query: 207 DVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMAL 266
+ AY +L + AV + + ++ N + VY + G+ I
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-LACVYYEQGLIDLAIDTY 260
Query: 267 VEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326
++ PD+Y N + +GS+ E A L + N L ++ +
Sbjct: 261 RRAIELQPHFPDAY-CNLANALKEKGSVAE--AEDCYNTALRLCPTHADSLNNLANIKRE 317
Query: 327 CRRPKEAMQVLRE-MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378
+EA+++ R+ +++ + +++L S + G L+EA+ + + I
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRI 368
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 7e-05
Identities = 46/381 (12%), Positives = 102/381 (26%), Gaps = 23/381 (6%)
Query: 396 KAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIV 455
+AG E+A + ++ N L +H K N P +
Sbjct: 11 QAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLA 67
Query: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRM 515
+ L + + + D + L +A G + A+ Y
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575
L+ + + E +K +PN S L G
Sbjct: 128 LQYNPDLYCVRSDLGNL---LKALGRLEEAKACYLKAIETQPNFAVAWSNL-----GCVF 179
Query: 576 DQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 635
+ + I+ + L + + ++ ++ +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 636 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDII-SYNTVIFAYCRNGRMKEASR 694
+ + L +Y A D R + ++P +Y + A G + EA
Sbjct: 236 HA-VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ-NTYNSIVDGY 753
++ + N EA+ + R ++ P ++++
Sbjct: 293 CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVL 349
Query: 754 CKLNQRYEAITFVNNLSKLDP 774
+ + EA+ ++ P
Sbjct: 350 QQQGKLQEALMHYKEAIRISP 370
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 6e-04
Identities = 32/288 (11%), Positives = 83/288 (28%), Gaps = 20/288 (6%)
Query: 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAE 549
L S + +C D++ ++ P L+ + L + + Q
Sbjct: 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 550 MKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAM 609
Y +L A +++ + + + L+ + N +
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGA------VQAYVSALQYNPDLYCVRSDLGNLL 145
Query: 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI 669
++ + A + + + ++ L +++ A + + +
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFA-----VAWSNLGCVFNAQGEIWLAIHHFEKAVT--L 198
Query: 670 KPDII-SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 728
P+ + +Y + A + + + Y L A+
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAI 257
Query: 729 DVVRYMIKQGCKPNQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 775
D R I+ +P+ + Y ++ + + EA N +L P
Sbjct: 258 DTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (90), Expect = 0.001
Identities = 23/204 (11%), Positives = 59/204 (28%), Gaps = 2/204 (0%)
Query: 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMV 376
D+ EA + +++ Y + E+ + +++
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 377 EIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436
I Y + +A +S +F++ R + A + + +
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186
Query: 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER--DTFNT 494
K+F+ K + + N ++ + + PE+ + +
Sbjct: 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246
Query: 495 LISAYSRCGSFDQAMSIYKRMLEA 518
++ S G + + KR A
Sbjct: 247 FLAFESNIGDLASILKVEKRRFTA 270
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 793 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.65 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.15 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.28 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.38 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.34 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.5e-21 Score=199.50 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
.+..+...+...|++++|...+++....+ +.+...+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33344444444444444444444444432 3344444445555555555555555555555431 223445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 003829 685 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 685 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 763 (793)
..|++++|.+.++.+..... .+...+..++.++...|++++|++.++++++. .|+ ..++..++.+|.+.|++++|+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554211 13345555555555555555555555555542 232 445555555555555555555
Q ss_pred HHHHHHhhCCCC
Q 003829 764 TFVNNLSKLDPH 775 (793)
Q Consensus 764 ~~~~~~~~~~~~ 775 (793)
..++++++.+|+
T Consensus 360 ~~~~~al~l~P~ 371 (388)
T d1w3ba_ 360 MHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHTTCTT
T ss_pred HHHHHHHHhCCC
Confidence 555555555555
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.7e-20 Score=191.66 Aligned_cols=382 Identities=13% Similarity=0.063 Sum_probs=249.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 003829 180 ISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 259 (793)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 259 (793)
...+.+.|++++|.+.++++++..+. +..++..++.+|.+.|++++|+..|+++.+..+ -+..+|..+...|.+.| +
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g-~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG-Q 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhc-c
Confidence 34455667777777777776665433 566677777777777777777777777766542 25566777777777777 6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003829 260 WNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLRE 339 (793)
Q Consensus 260 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 339 (793)
+++|+..+....+.... +..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 77777777776665433 33333333333334444444444444444332 22344444455555666677777766666
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003829 340 MKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNI 419 (793)
Q Consensus 340 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (793)
.... .+.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+ ..+.
T Consensus 161 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 6554 23345566667777777777777777777776653 3345566677777777777777777777766653 3355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003829 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (793)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (793)
..+..+...+.+.|++++|++.|++..+.. +.+..+|..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 666667777777777777777777776653 3345667777777777777777777777776653 33666777777778
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHcCCC
Q 003829 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKP-NELTYSSLLHAYANGRE 574 (793)
Q Consensus 500 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 574 (793)
...|++++|.+.|+++++.... +..++..+...+.+.|++++|...|++.++. .| +..++..+..+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888887776443 5667777778888888888888888887764 34 45667777777766554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.6e-13 Score=135.45 Aligned_cols=269 Identities=12% Similarity=0.067 Sum_probs=178.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGM 539 (793)
Q Consensus 460 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 539 (793)
....+.+.|++++|+..|+++.+..+. +..++..+...+...|++++|...|.++.+.... +...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 344566667777777777777665433 5667777777777777777777777777765444 56667777777777777
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003829 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 619 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 619 (793)
+++|.+.++++... .|+............... +.......+..+...+.+
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 152 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGA----------------------------GLGPSKRILGSLLSDSLF 152 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC-------------------------------------------CTTHHHHHHHHH
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhc----------------------------ccccchhhHHHHHHhhHH
Confidence 77777777777653 222211100000000000 000011111222334556
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003829 620 AKTNEILHFMNDSG-FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSE 698 (793)
Q Consensus 620 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 698 (793)
.+|.+.+.+..+.. -..+..++..+...+...|++++|+..+++..... +-+...|..++.+|...|++++|.+.|++
T Consensus 153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHH
Confidence 77777777766542 23456778888889999999999999999998763 33577889999999999999999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------------HHHHHHHHHHHHccCCHHHHHHH
Q 003829 699 MRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------------QNTYNSIVDGYCKLNQRYEAITF 765 (793)
Q Consensus 699 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------------~~~~~~l~~~~~~~g~~~~A~~~ 765 (793)
+++ ..| +..++..++.+|.+.|++++|++.|+++++. .|+ ...|..+..++...|+.+.+...
T Consensus 232 al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 232 ALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998 445 4678899999999999999999999998862 221 23566677777777776655433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-12 Score=130.18 Aligned_cols=229 Identities=14% Similarity=0.025 Sum_probs=139.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003829 179 LISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM 258 (793)
Q Consensus 179 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 258 (793)
....+.+.|++++|...|+.+++..+. +..+|..++.++...|++++|+..|++..+..+ -+...|..+...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~- 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES- 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc-
Confidence 444556677777777777777766544 566777777777777777777777777766542 25566666777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 003829 259 PWNKIMALVEGMKSAGVKPDS--------------YTFNTLISCCRRGSLHEEAAGVFEEMKLAG-FSPDKVTYNALLDV 323 (793)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~p~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~ 323 (793)
++++|.+.++++......... ......+..+...+.+.+|...+.+..+.. -..+...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 677777777776654321000 000011122233345566666666655442 12344556666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (793)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 403 (793)
+...|++++|+..|++.... .+-+..+|..+...|...|++++|++.|++.++.. +-+..++..+..+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc-ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776654 22245566667777777777777777777766652 23455666666677777777777
Q ss_pred HHHHHHHHH
Q 003829 404 MKVFEEMRS 412 (793)
Q Consensus 404 ~~~~~~~~~ 412 (793)
+..|++.++
T Consensus 260 ~~~~~~al~ 268 (323)
T d1fcha_ 260 VEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1e-09 Score=110.44 Aligned_cols=274 Identities=9% Similarity=-0.029 Sum_probs=184.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CC----CHhhHHHHH
Q 003829 496 ISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLL 566 (793)
Q Consensus 496 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~ 566 (793)
...+...|++++|.+++++..+.....+ ...+..+...+...|++++|...+++...... .+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445556666666666666655432211 23444555666666777777777666543210 01 122344455
Q ss_pred HHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH
Q 003829 567 HAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPSLT 639 (793)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 639 (793)
..+...|++..+...+..... .......... ...+..+...+...|+++.+...+...... +......
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~-----~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQ-----LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 667778888888887776543 1122222221 235666778889999999999999888764 2222345
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 003829 640 TYNTLMYMYSRSENFARAEDVLREILAKG--IKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVIT 710 (793)
Q Consensus 640 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~ 710 (793)
.+..+...+...++..++...+.+..... .... ...+..+...+...|++++|...+++..+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 56667777888999999999988776431 1111 2356667778889999999999999887643222 2355
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIK----QGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
+..++.++...|++++|...+++++. .+..|+ ...+..++.+|.+.|++++|.+.+++++++.+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 67789999999999999999999874 244444 56788899999999999999999999988743
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.4e-09 Score=106.41 Aligned_cols=213 Identities=11% Similarity=0.092 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHH
Q 003829 526 TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR-EIDQMLALSEEIYSERAFLELKKKGFSPDIP 604 (793)
Q Consensus 526 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (793)
.++.+...+.+.+.+++|+.+++++++.+ +-+...|+....++...| ++++|+..++.++.. -+-+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----------~p~~~~ 113 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------QPKNYQ 113 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----------HHhhhh
Confidence 44444455566666666666666666542 224445555555555544 366666666654431 133466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003829 605 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 684 (793)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 684 (793)
+|..+...+.+.|++++|++.++++.+.. +.+...|..++.++...|++++|++.++++++.+ +-+...|+.+..++.
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHH
Confidence 77777777777777777777777777764 5567777777777777788888888888887753 225666776666666
Q ss_pred HcCC------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003829 685 RNGR------MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 754 (793)
Q Consensus 685 ~~g~------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 754 (793)
+.+. +++|.+.+.++++ ..| +...|..+...+. ....+++.+.++..++....+ +...+..++..|.
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5554 5677777777777 444 4566666655543 344567777777776532222 2445555665554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.4e-09 Score=104.65 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003829 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVIL 250 (793)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll 250 (793)
...++..+..++.+.+++++|+++++.+++..+. +..+|+....++...|+ +++|+..+++..+..+. +..+|+.+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence 4556666777777777778888888877776554 66777777777777654 77788887777776432 666777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 003829 251 NVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRR- 329 (793)
Q Consensus 251 ~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~- 329 (793)
..+.+.| ++++|++.++++.+..+. +...|..+...+.+.|++++|...++.+++.+ +.+...|+.+..++.+.+.
T Consensus 120 ~~~~~l~-~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 120 VLVEWLR-DPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhc-cHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 7777777 677777777777665443 56666666666666666666766666666653 2245556555555544443
Q ss_pred -----hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003829 330 -----PKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVE 377 (793)
Q Consensus 330 -----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 377 (793)
+++|++.+.+.++. .+.+...|+.+...+ .....+++.+.++...+
T Consensus 197 ~~~~~~~~ai~~~~~al~~-~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKL-VPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLD 247 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHh-CCCchHHHHHHHHHH-HhcChHHHHHHHHHHHH
Confidence 34555555555443 122444454444333 22233445555544444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.2e-09 Score=105.86 Aligned_cols=267 Identities=12% Similarity=0.047 Sum_probs=145.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhc----CCCCC---CHh
Q 003829 493 NTLISAYSRCGSFDQAMSIYKRMLEAGVT-PD----LSTYNAVLAALARGGMWEQSEKIFAEMKG----GRCKP---NEL 560 (793)
Q Consensus 493 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p---~~~ 560 (793)
..+...+...|++++|...+++..+.... ++ ...+..+...+...|++..+...+.+... ..... ...
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~ 134 (366)
T d1hz4a_ 55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence 33444444445555555555444332000 01 12233334445555555555555554332 11111 112
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC-
Q 003829 561 TYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPS- 637 (793)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~- 637 (793)
.+..+...+...|+++.+...++.... .....+.......+......+...++..++...+.+.... .....
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIE-----VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHH-----HhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 333444555666666666666654432 1111122223344555556666677777777766655432 11111
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC
Q 003829 638 ---LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRD----SGLVPD 707 (793)
Q Consensus 638 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 707 (793)
...+..+...+...|++++|...+++........+ ...+..+..++...|++++|...+++++. .+..|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence 22345566677788888888888887765422222 34556677888888999999998888764 234443
Q ss_pred H-HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHccCCHHHHHH
Q 003829 708 V-ITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP----NQNTYNSIVDGYCKLNQRYEAIT 764 (793)
Q Consensus 708 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 764 (793)
. .++..++.+|...|++++|++.++++++. |... ....+..++..+...|+.+++..
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 2 56788888899999999999998887652 2111 11233444455556666666543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.6e-09 Score=103.37 Aligned_cols=222 Identities=9% Similarity=-0.106 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHhcCCC-CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 540 WEQSEKIFAEMKGGRC-KP--NELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPDIPTLNAMISIYGRR 616 (793)
Q Consensus 540 ~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 616 (793)
.+.++.-+++...... .+ ...++..+..+|.+.|++++|+..|++.+.. -+.+..+|..++.++.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----------~p~~~~a~~~lg~~~~~~ 84 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----------RPDMPEVFNYLGIYLTQA 84 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----------CCCCHHHHhhhchHHHHH
Confidence 4455555666654321 11 2235666677788888888888888776531 134577888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 696 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 696 (793)
|++++|++.|+++.+.. +.+..++..++.+|...|++++|++.|++.++.. +.+......+..++.+.+..+.+..+.
T Consensus 85 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLK 162 (259)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999998865 5567788889999999999999999999998863 334555555556666667666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 003829 697 SEMRDSGLVPDVITYNTFVASYAADSL----FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSK 771 (793)
Q Consensus 697 ~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 771 (793)
.........+ ..+. ++..+..... .+.+...+..... ..|+ ..+|..++..|...|++++|+..++++++
T Consensus 163 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 163 QHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666532222 1121 2222222111 2222222222222 1222 45677899999999999999999999999
Q ss_pred CCCCCCH
Q 003829 772 LDPHVTK 778 (793)
Q Consensus 772 ~~~~~~~ 778 (793)
.+|++-.
T Consensus 238 ~~p~~~~ 244 (259)
T d1xnfa_ 238 NNVHNFV 244 (259)
T ss_dssp TCCTTCH
T ss_pred cCCCCHH
Confidence 9998643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=1.5e-08 Score=98.86 Aligned_cols=184 Identities=9% Similarity=0.051 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003829 190 SVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEG 269 (793)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~ 269 (793)
++|..+|+..++...+.+...|...+..+.+.|++++|..+|+++.+..+......|...+..+.+.| +.+.|.++|+.
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~-~~~~ar~i~~~ 159 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-ChHHHHHHHHH
Confidence 44555555554432333444555555555555555555555555554322222334555555555544 45555555555
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 003829 270 MKSAGVKPDSYTFNTLISC-CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKING-CLP 347 (793)
Q Consensus 270 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 347 (793)
+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5444322 12222222211 22234445555555544443 12233444444444444555555555555444431 111
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003829 348 S--IVTYNSLISAYARDGLLEEAMELKTQMV 376 (793)
Q Consensus 348 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 376 (793)
. ...|...+..-...|+.+.+.++++++.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1234444444444444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=2.9e-08 Score=96.82 Aligned_cols=185 Identities=11% Similarity=0.066 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003829 224 YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFE 303 (793)
Q Consensus 224 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 303 (793)
.++|..+|++..+..++.+...|...+..+.+.| +.+.|..+|+++.+.........|...+..+.+.|+.+.|+.+|+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~-~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4556666666654433334455555555555655 566666666666554333223345555555555566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC
Q 003829 304 EMKLAGFSPDKVTYNALLDV-YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG-IT 381 (793)
Q Consensus 304 ~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 381 (793)
++.+.+ +.+...|...+.. +...|+.+.|..+|+.+... .+.+...|...+..+.+.|++++|..+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 555542 1122233222222 22235555555555555543 22344455555555555555555555555554432 12
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003829 382 PD--VFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (793)
Q Consensus 382 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 411 (793)
|+ ...|...+..-...|+.+.+..+++++.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 2234444444444455555555544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=7.5e-10 Score=110.12 Aligned_cols=259 Identities=7% Similarity=-0.043 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCChHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHcCC-
Q 003829 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLAA----------LARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR- 573 (793)
Q Consensus 505 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 573 (793)
.++|+++++.+++..+. +...|+..-.. +...|++++|+.+++.....+ +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 35666666666554332 33333222211 223345677888888877642 335556666666665544
Q ss_pred -CHHHHHHHHHHHHhHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003829 574 -EIDQMLALSEEIYSERAFLELKKKGFSPDIPTLN-AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 651 (793)
Q Consensus 574 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 651 (793)
+.++++..++.++. . -+.+...+. .....+...+..++|+..++.+.+.+ +.+...|+.+..++.+.
T Consensus 123 ~~~~~a~~~~~~al~---------~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 123 PNWARELELCARFLE---------A-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp CCHHHHHHHHHHHHH---------H-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh---------h-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 47778777766543 1 133455543 44466777888999999998888876 56788888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003829 652 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVV 731 (793)
Q Consensus 652 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 731 (793)
|++++|...+++..+. .|+ ...+...+...+..+++...+......... +...+..++..+...|+.++|+..+
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888877666655543 111 122334456667788888888888874322 3455667777888889999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003829 732 RYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 785 (793)
Q Consensus 732 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 785 (793)
.+.++. .| +..++..++.++...|++++|+++++++++.+|.. ...|..|.
T Consensus 266 ~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~-~~y~~~L~ 317 (334)
T d1dcea1 266 QELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDLR 317 (334)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc-HHHHHHHH
Confidence 988763 34 36778889999999999999999999999999863 33444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.9e-09 Score=101.39 Aligned_cols=221 Identities=11% Similarity=-0.053 Sum_probs=139.4
Q ss_pred ChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003829 148 KTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREA 227 (793)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (793)
+.+.|+.-+..+.. ......+....++..+..++.+.|++++|...|+..++..+. ++.+|..++.+|.+.|++++|
T Consensus 14 ~~e~al~~~~e~l~--~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 14 QQEVILARMEQILA--SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHH--hhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHh
Confidence 44566666666654 111112234567888888999999999999999998887655 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003829 228 VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKL 307 (793)
Q Consensus 228 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 307 (793)
+..|+++.+..+. +..++..+..+|...| ++++|...+++..+..+. +......+..++.+.+..+.+..+......
T Consensus 91 ~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 91 YEAFDSVLELDPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhh-hhhhHHHHHHHHHHHh-hHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999999887532 5667888888888888 899999999988876533 444444444445555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003829 308 AGFSPDKVTYNALLDVYGKCRRP----KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEI 378 (793)
Q Consensus 308 ~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 378 (793)
.. ++...++ ++..+...... +.+...+...... .+....+|..+...|...|++++|.+.|++.+..
T Consensus 168 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 168 SD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp SC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 42 2222222 22222222111 1111111111110 0011235566677777777777777777777764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=2.8e-09 Score=105.91 Aligned_cols=253 Identities=8% Similarity=-0.014 Sum_probs=162.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 185 KEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYA----------SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYG 254 (793)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 254 (793)
..+..++|.++++.+++..+. +..+|+.....+. ..|++++|+.+|++..+..+ -+...|..+..++.
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~ 118 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHH
Confidence 334457888888888776544 5555554443332 34457888888888887643 36677777777776
Q ss_pred hcCC-CHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003829 255 KMGM-PWNKIMALVEGMKSAGVKPDSYTFNT-LISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332 (793)
Q Consensus 255 ~~g~-~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 332 (793)
..+. ++++|...++++.+.... +...+.. ....+...+.+++|...++.+.+.. +-+...|+.+..++.+.|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 6652 478888888888776433 4444443 3455667788888888888887764 2367778888888888888877
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003829 333 AMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRS 412 (793)
Q Consensus 333 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 412 (793)
|...++..... .|+ ...+...+...+..+++...+....... +++...+..+...+...|+.++|...+.+...
T Consensus 197 A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 76555443331 111 1122334455566667777777666553 33344455556666677777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003829 413 AGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC 448 (793)
Q Consensus 413 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 448 (793)
.. +.+...+..+...|...|+.++|.+.++++.+.
T Consensus 271 ~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 52 224456666777777778888888888777665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.2e-08 Score=87.49 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=81.2
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChH
Q 003829 647 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFV 725 (793)
Q Consensus 647 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 725 (793)
.+...|++++|++.|+++ .+++..+|..++.+|...|++++|.+.|+++++ +.| +...|..++.+|.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHH
Confidence 445566666666666543 234555666666666666666666666666666 333 3456666666666666666
Q ss_pred HHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003829 726 EALDVVRYMIKQGC--------------KPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 788 (793)
Q Consensus 726 ~A~~~~~~~~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 788 (793)
+|++.|++.++..- ..+ ..++..++.++.+.|++++|.+.++++++..|++........+..+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 66666666654210 001 2445566667777777777777777777777765554444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.1e-07 Score=76.70 Aligned_cols=99 Identities=15% Similarity=0.051 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 003829 678 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLN 757 (793)
Q Consensus 678 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 757 (793)
.-+..+...|++++|..+|+++++.... +...|..++.+|...|++++|+..++++++.+ +.+...|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 4467788899999999999999984332 56889999999999999999999999999853 346888999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCH
Q 003829 758 QRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 758 ~~~~A~~~~~~~~~~~~~~~~ 778 (793)
++++|+..++++++.+|+++.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999998654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=4.7e-08 Score=88.57 Aligned_cols=123 Identities=8% Similarity=0.031 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003829 636 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTF 714 (793)
Q Consensus 636 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 714 (793)
|+...+...+..|.+.|++++|+..|++++... +.+...|..++.+|.+.|++++|...|+++++ +.| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 667777788888999999999999999988863 44677888999999999999999999999988 556 45788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAI 763 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 763 (793)
+.+|...|++++|+..++++++. .|+ ...+...+..+...++...+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~l~~~~~~~~~ 126 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWN 126 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999988763 332 223333344444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.4e-07 Score=81.23 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYA 719 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 719 (793)
+...+..|.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|...|+++++ +.| +..+|..++.+|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHH
Confidence 3444555666666777777776666653 33456666666666666777777777766666 333 3456666666666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 003829 720 ADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 720 ~~g~~~~A~~~~~~~~~~ 737 (793)
..|++++|+..++++++.
T Consensus 90 ~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 667777776666666653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=6.3e-08 Score=78.27 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=80.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QNTYNSIVDG 752 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 752 (793)
..+++.+...+++++|.+.|++++..+.. +..++..++.++.+.++ +++|+.+++++++.+..|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35677788888999999999999984332 56888889999887554 4569999999886433333 3477889999
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 753 YCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 753 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
|.+.|++++|+++++++++.+|++...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999999999999987654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=3.1e-05 Score=72.78 Aligned_cols=149 Identities=15% Similarity=0.043 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 003829 616 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS----RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NG 687 (793)
Q Consensus 616 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 687 (793)
..+.+.|...++...+.|. ......+...+. .......+...+.+.... .+...+..+...|.. ..
T Consensus 87 ~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCC
T ss_pred chhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCccc
Confidence 3456666666666666542 222222222222 244567777777776663 355666777777765 35
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCH
Q 003829 688 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQR 759 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 759 (793)
+...+..+++...+.| +......++..|.. ..++++|+.+|++..+.| ++..+..|+..|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 6777788888877744 45666667766665 567888888888888765 45666677777764 3478
Q ss_pred HHHHHHHHHHhhCCCCC
Q 003829 760 YEAITFVNNLSKLDPHV 776 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~ 776 (793)
++|.++++++.+.|..+
T Consensus 235 ~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 235 KQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHCcCHH
Confidence 88888888888887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=8.1e-07 Score=85.32 Aligned_cols=203 Identities=16% Similarity=0.051 Sum_probs=137.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 003829 566 LHAYANGREIDQMLALSEEIYSERAFLELKKKGFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GF-TPSLT 639 (793)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 639 (793)
...|...+++++|...|++.... ....+-.++ ..+|..++.+|.+.|++++|.+.+++..+. +. .....
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~-----~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADY-----QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 34566777777777777765431 112221221 357888889999999999999999987653 10 11134
Q ss_pred HHHHHHHHHH-ccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----H
Q 003829 640 TYNTLMYMYS-RSENFARAEDVLREILAK----GIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-----V 708 (793)
Q Consensus 640 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~ 708 (793)
++..++..|. ..|++++|+..+++..+. +-.+ ...++..++..|...|++++|.++|+++........ .
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 4566666664 469999999999988743 1111 134678889999999999999999999988422211 1
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHc--cCCHHHHHHHHHHHhhCCCC
Q 003829 709 -ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------QNTYNSIVDGYCK--LNQRYEAITFVNNLSKLDPH 775 (793)
Q Consensus 709 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 775 (793)
..+...+.++...|+++.|.+.++++.+. .|. ......++.++.. .+++++|+..|+++.+++|.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence 23455666778899999999999998763 332 2344566666654 34688999999888887643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.1e-06 Score=78.10 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003829 610 ISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM 689 (793)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 689 (793)
+..+...|++++|++.|.++. +++..+|..+..+|...|++++|++.|++.++.+ +.+...|..++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445778999999999998753 5788889999999999999999999999999874 33578999999999999999
Q ss_pred HHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 690 KEASRIFSEMRDSGLV--------------PD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 690 ~~A~~~~~~~~~~~~~--------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
++|.+.|++.++.... .+ ..++..++.++.+.|++++|.+.++.+++. .|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~----------- 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP----------- 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG-----------
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc-----------
Confidence 9999999999863111 11 256778899999999999999999999874 4442
Q ss_pred ccCCHHHHHHHHHHHhhCCC
Q 003829 755 KLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~~~~ 774 (793)
..+..+.|+..+.+.....|
T Consensus 154 ~~~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 154 RHSKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp GGGHHHHHHHHHHTTCCCCC
T ss_pred chHHHHHHHHHHHhhhhCCc
Confidence 22334555555555444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.1e-06 Score=70.54 Aligned_cols=104 Identities=15% Similarity=0.038 Sum_probs=79.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 723 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 723 (793)
-+..+.+.|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++++.+.. +...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 4566778888888888888888763 445778888888888888888888888888884332 56788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003829 724 FVEALDVVRYMIKQGCKPN-QNTYNSIVD 751 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 751 (793)
+++|+..+++.++. .|+ ...+..+..
T Consensus 87 ~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH--EANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88888888888873 454 555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=8e-07 Score=85.37 Aligned_cols=171 Identities=13% Similarity=0.024 Sum_probs=123.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--C-CC--CHHHHH
Q 003829 608 AMISIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKG--I-KP--DIISYN 677 (793)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~--~~~~~~ 677 (793)
..+..|...+++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|...+++..... . .+ ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 3466788999999999999988753 1111 23568889999999999999999999877531 1 11 134566
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHH
Q 003829 678 TVIFAYCR-NGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN------QNT 745 (793)
Q Consensus 678 ~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~ 745 (793)
.++..|.. .|++++|.++++++.+. +..+. ..++..++..|...|++++|++.++++........ ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 77777755 59999999999998752 22111 25688899999999999999999999987421111 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 746 YNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 746 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+...+.++...|+++.|...++++.+.+|....
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~ 234 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence 445666777899999999999999999886443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-06 Score=75.40 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 003829 681 FAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQR 759 (793)
Q Consensus 681 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 759 (793)
..|.+.|++++|...|+++++. .| +...|..++.+|...|++++|+..++++++.+ +.+...|..++.+|...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 3444455555555555555542 22 23444445555555555555555555554421 11244444455555555555
Q ss_pred HHHHHHHHHHhhCCCCC
Q 003829 760 YEAITFVNNLSKLDPHV 776 (793)
Q Consensus 760 ~~A~~~~~~~~~~~~~~ 776 (793)
++|...++++++.+|++
T Consensus 95 ~eA~~~~~~a~~~~p~~ 111 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHD 111 (159)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 55555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00025 Score=66.35 Aligned_cols=222 Identities=13% Similarity=-0.014 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003829 208 VYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGK----MGMPWNKIMALVEGMKSAGVKPDSYTFN 283 (793)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~~a~~~~~~~~~~~~~p~~~~~~ 283 (793)
+..+..|+..+...|++++|+++|++..+.| +..++..|...|.. .. +...+...++.....+ +.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~-d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcch-hHHHHHHhhccccccc---ccchhh
Confidence 3445555555556666666666666665554 44444445555443 22 4555555555555443 222222
Q ss_pred HHHHHHH----cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 003829 284 TLISCCR----RGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK----CRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (793)
Q Consensus 284 ~l~~~~~----~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 355 (793)
.+...+. ...+.+.|...++.....|. ......+...+.. ......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 2222222 23455566666665555542 1222222222221 23344455555444332 234445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003829 356 ISAYAR----DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK----AGKDESAMKVFEEMRSAGCKPNICTFNALIK 427 (793)
Q Consensus 356 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 427 (793)
...|.. ..+...+...++...+.| +......+...+.. ..++++|...|+...+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555543 334455555555555443 33344444444433 345555555555555544 3344444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhC
Q 003829 428 MHGN----RGNFVEMMKVFDEINKC 448 (793)
Q Consensus 428 ~~~~----~g~~~~A~~~~~~~~~~ 448 (793)
+|.. ..+.++|.+.|++....
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHC
Confidence 4442 22455555555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=3.3e-07 Score=82.73 Aligned_cols=99 Identities=10% Similarity=-0.057 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKP-DIISYNT 678 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 678 (793)
.|+...+...+..+.+.|++++|+..|++.++.. |.+...|..++.+|.+.|++++|+..|+++++. .| +..+|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHH
Confidence 3677888889999999999999999999998875 678899999999999999999999999999985 44 4778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003829 679 VIFAYCRNGRMKEASRIFSEMRD 701 (793)
Q Consensus 679 l~~~~~~~g~~~~A~~~~~~~~~ 701 (793)
++.+|...|++++|...|+++++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.45 E-value=6.8e-07 Score=71.19 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003829 677 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 754 (793)
Q Consensus 677 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 754 (793)
..++..+.+.|++++|...|+++++ ..| +...|..++.++.+.|++++|+..++++++. .| +...|..++.+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHH
Confidence 3456667778888888888888887 344 4677788888888888888888888888774 44 4777788888888
Q ss_pred ccCCHHHHHHHHHHHh
Q 003829 755 KLNQRYEAITFVNNLS 770 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~ 770 (793)
..|++++|.+.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888887754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.1e-06 Score=76.23 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 710 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 710 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+|+.++.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..|+++++++|++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~ 131 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 3445555555666666666666665553 23 3555555666666666666666666666666655433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.39 E-value=4.6e-06 Score=70.63 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
.+|..++.+|.+.|++++|++.++++++.+ +.+..+|..++.+|...|++++|+..++++++.+|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 467789999999999999999999999853 33589999999999999999999999999999999876653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.6e-06 Score=70.94 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-----HHHHHH
Q 003829 675 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC-KPN-----QNTYNS 748 (793)
Q Consensus 675 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~ 748 (793)
.+..++..+...|++++|...|+++++.+.. +...+..++.+|.+.|++++|++.++++++... .+. ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3456677788888888888888888884322 467778888888888888888888888775210 011 245667
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 749 IVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 749 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
++..+...+++++|++++++.+..+++++
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 77778888888888888888887776543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.2e-06 Score=67.92 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=50.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDV-ITYNTFVASY 718 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 718 (793)
.+++.+...+++++|.+.|++.+..+ +.+..++..++.++.+.++ +++|..+|+++++.+..|+. .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34455555556666666666666543 3345555556666554333 33466666666553222221 2455566666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 003829 719 AADSLFVEALDVVRYMIK 736 (793)
Q Consensus 719 ~~~g~~~~A~~~~~~~~~ 736 (793)
.+.|++++|++.|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 666666666666666665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=4.4e-06 Score=66.26 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 003829 644 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS 722 (793)
Q Consensus 644 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 722 (793)
++..+.+.|++++|+..|+++++.. +-+...|..++.++.+.|++++|...|+++++ +.| +..++..++.+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCC
Confidence 4556777788888888888888753 33577788888888888888888888888887 444 4577788888888888
Q ss_pred ChHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMI 735 (793)
Q Consensus 723 ~~~~A~~~~~~~~ 735 (793)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888887754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=2.1e-05 Score=67.83 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 751 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 751 (793)
.+|+.+..+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..|+++++. .| +..+...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3577788899999999999999999998 455 6788999999999999999999999999884 45 5666666666
Q ss_pred HHHccCCHH
Q 003829 752 GYCKLNQRY 760 (793)
Q Consensus 752 ~~~~~g~~~ 760 (793)
+..+.+...
T Consensus 139 ~~~~~~~~~ 147 (170)
T d1p5qa1 139 CQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=9.2e-06 Score=66.25 Aligned_cols=103 Identities=10% Similarity=0.135 Sum_probs=72.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CC--C-HHHHHHH
Q 003829 641 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL---VP--D-VITYNTF 714 (793)
Q Consensus 641 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~-~~~~~~l 714 (793)
+..+...+.+.|++++|+..|++.++.+ +.+...|..+..+|...|++++|...++++++... .. . ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456677777888888888888888763 33577777888888888888888888888776211 10 0 1466777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 715 VASYAADSLFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 715 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
+..+...+++++|++.+++.+.. .++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 77888888888888888887763 3454443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0029 Score=59.96 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 003829 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356 (793)
Q Consensus 277 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 356 (793)
||..-...++.-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 343334444444555555555555554332 1334445555555555555555433 1334555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003829 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNR 432 (793)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (793)
..+.+.....-| .+...+...+......++..|-..|..++...+++..... -..+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 555544444322 1111222223333444555555555555555555544322 123444455555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=7.4e-06 Score=70.87 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 708 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 708 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
...|..++.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++.+|++..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~ 147 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 147 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 356788889999999999999999999984 45 48899999999999999999999999999999987654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.14 E-value=2.8e-05 Score=66.88 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 003829 711 YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 711 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 778 (793)
|..++.+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..++++++.+|++..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4445555666666666666666665532 223555556666666666666666666666666665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.08 E-value=4e-05 Score=64.63 Aligned_cols=76 Identities=14% Similarity=0.029 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD 751 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 751 (793)
.+|..++.+|.+.|++++|++.++++++ +.| +..+|..++.+|...|++++|+..|++.++. .|+ ..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4677889999999999999999999998 455 5689999999999999999999999999984 554 556555544
Q ss_pred HH
Q 003829 752 GY 753 (793)
Q Consensus 752 ~~ 753 (793)
+.
T Consensus 144 ~~ 145 (153)
T d2fbna1 144 CV 145 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.05 E-value=2.3e-05 Score=67.53 Aligned_cols=95 Identities=11% Similarity=0.012 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003829 674 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVD 751 (793)
Q Consensus 674 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 751 (793)
.+|..+..+|.+.|++++|+..++++++ +.| +...|..++.+|...|++++|+..|+++++. .|+ ..+...+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~--l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhh--cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3566788889999999999999999998 444 5688999999999999999999999999884 554 666666666
Q ss_pred HHHccCCHH-HHHHHHHHHhhC
Q 003829 752 GYCKLNQRY-EAITFVNNLSKL 772 (793)
Q Consensus 752 ~~~~~g~~~-~A~~~~~~~~~~ 772 (793)
+..+.++.. ...+.+.+|.+.
T Consensus 141 ~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 655555443 355555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0061 Score=57.68 Aligned_cols=135 Identities=11% Similarity=0.155 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003829 383 DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLA 462 (793)
Q Consensus 383 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 462 (793)
|..-...+...|.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333334455556666666666666664432 4455566666666666666655432 4556666666
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGG 538 (793)
Q Consensus 463 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 538 (793)
.+.+.....-+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 66655544332 12222233455555667777777777777777777665432 235666677777777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.8e-06 Score=88.28 Aligned_cols=111 Identities=8% Similarity=-0.025 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003829 638 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVA 716 (793)
Q Consensus 638 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 716 (793)
...+..+...+.+.|+.++|...+++..+. . ...++..++..+...|++++|..+|+++.+ +.|+. ..|+.|+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAI 194 (497)
T ss_dssp -----------------------CCHHHHH--H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHH
Confidence 334444555555555555555555544432 1 123444555555555555555555555555 33432 45555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 717 SYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 717 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
.+...|+..+|+..|.+.+... +|-..++..|...+.
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 5555555555555555555421 233445555544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=6.4e-05 Score=64.72 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 750 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 750 (793)
...|..+..+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..|+++++. .| +..+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45677888999999999999999999999 445 5688999999999999999999999999985 44 466677776
Q ss_pred HHHHccCCHHH
Q 003829 751 DGYCKLNQRYE 761 (793)
Q Consensus 751 ~~~~~~g~~~~ 761 (793)
.+..+.....+
T Consensus 153 ~~~~~l~~~~~ 163 (169)
T d1ihga1 153 KVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66554444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=2.4e-06 Score=88.82 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-H-HHHHHHhcCChHHHHHHHH
Q 003829 471 SEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYN-A-VLAALARGGMWEQSEKIFA 548 (793)
Q Consensus 471 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~-l~~~~~~~g~~~~A~~~~~ 548 (793)
-+|.+.|++..+.... ....+..+..++...|++++| |++++.. |..... . ....+.+ ..+..+.+.++
T Consensus 3 ~eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~----dp~~a~~~~~e~~Lw~-~~y~~~ie~~r 73 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT----DLEYALDKKVEQDLWN-HAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH----CHHHHHHHTHHHHHHH-HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc----ChhhHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 3788888888764221 233556667777777777766 6666654 222111 1 1111111 12456777787
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003829 549 EMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSERAFLELKKKGFS-PDIPTLNAMISIYGRRQMVAKTNEILH 627 (793)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (793)
...+....++..........+ +..|...|+.++.. +. ...++. ++...+..+...+.+.|+.++|...+.
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~-----l~~a~~~Y~~ai~~--l~--~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLF-----LEAASGFYTQLLQE--LC--TVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHH-----HHHHHHHHHHHHHH--HT--C-------------------------------CC
T ss_pred HhcccccCccHHHHHHHHHHH-----HHHHHHHHHHHHHH--HH--HHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 777654344433332222222 23344444433210 00 011222 345677888888899999999998887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003829 628 FMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 707 (793)
Q Consensus 628 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 707 (793)
...+.. ...++..+++.+...|++++|+..|+++.+.. +.+...|+.++..+...|+..+|...|.+.+... .|-
T Consensus 145 ~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~ 219 (497)
T d1ya0a1 145 SSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPF 219 (497)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCC
T ss_pred HHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Confidence 776532 23567788999999999999999999999863 3457899999999999999999999999999843 345
Q ss_pred HHHHHHHHHHHHhcCC
Q 003829 708 VITYNTFVASYAADSL 723 (793)
Q Consensus 708 ~~~~~~l~~~~~~~g~ 723 (793)
..++..|...+.+..+
T Consensus 220 ~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 220 PAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6788888888765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=5.1e-05 Score=57.62 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 003829 709 ITYNTFVASYAADSLFVEALDVVRYMIKQ-----GCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 780 (793)
Q Consensus 709 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 780 (793)
..+..++..+.+.|++++|+..++++++. ...++ ..++..|+.++.+.|++++|+..++++++.+|+++...
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 34456777888888888888888887652 11222 56778888888888888888888888888888866543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.83 E-value=0.00023 Score=61.32 Aligned_cols=111 Identities=10% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003829 643 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 722 (793)
Q Consensus 643 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 722 (793)
.........|++++|.+.|.+.+... +....- . ...+.+ +...-..+... ....+..++.++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~-----~-~~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVLD-----D-LRDFQF--VEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTG-----G-GTTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccccc-----c-CcchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34456778889999999999888751 111000 0 000000 00000111110 1234556666666667
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003829 723 LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 769 (793)
Q Consensus 723 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 769 (793)
++++|+..++++++. .| +...|..++.+|.+.|+.++|+..|+++
T Consensus 82 ~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 82 RASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777777777766663 33 4666666666777777777776666665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.83 E-value=1.2e-05 Score=74.69 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=79.8
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHH
Q 003829 648 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVE 726 (793)
Q Consensus 648 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 726 (793)
..+.|++++|+..+++.++.. +.|...+..++..|+..|++++|.+.|+.+.+ ..|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 345688888888888888763 44577788888888888888888888888887 55543 445555555544443333
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003829 727 ALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 777 (793)
Q Consensus 727 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 777 (793)
+..-.......+ .|+ ...+...+..+.+.|+.++|.+.++++.+..|...
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 322221111111 222 33344455667778888888888888888877754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.80 E-value=6e-05 Score=63.81 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 003829 675 SYNTV--IFAYCRNGRMKEASRIFSEMRDSGL-VPD----------VITYNTFVASYAADSLFVEALDVVRYMIKQ---- 737 (793)
Q Consensus 675 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 737 (793)
+|..+ +..+...|++++|+..|++.++... .|+ ...|+.++.+|...|++++|++.+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4556677888888888888876211 111 356888899999999999999998888752
Q ss_pred -CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 738 -GCKPN-----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 738 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
...++ ...+..++.+|...|++++|+..|++++++.|
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11222 23567788999999999999999999988744
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=1.8e-05 Score=65.99 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-----------CHHHHHHHHHHHhhCCCCCCH
Q 003829 724 FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN-----------QRYEAITFVNNLSKLDPHVTK 778 (793)
Q Consensus 724 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~ 778 (793)
+++|+..++++++. .| +..+|..++.+|...| ++++|.+.|+++++.+|+++.
T Consensus 57 ~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 57 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHh--cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 34555666665552 33 3555555555555443 256677777777777776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.75 E-value=6.4e-05 Score=62.50 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHHHH
Q 003829 688 RMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS-----------LFVEALDVVRYMIKQGCKPNQNTY 746 (793)
Q Consensus 688 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~ 746 (793)
.+++|...|+++++ +.| +..+|..++.+|...| ++++|.+.|+++++ +.|+...+
T Consensus 56 ~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~ 122 (145)
T d1zu2a1 56 MIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 122 (145)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHHH--hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHH
Confidence 34555555555555 333 3355555555554433 24667777777766 45553333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00051 Score=59.02 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003829 606 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 685 (793)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 685 (793)
...........|++++|...|.+..... +.... .......-+...-..+... ....+..++.++..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444557788999999999999998752 11110 0001101111111122211 24567888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 003829 686 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMI-----KQGCKPNQNTY 746 (793)
Q Consensus 686 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~ 746 (793)
.|++++|...++++++ ..| +...|..++.+|...|+.++|++.|+++. +.|+.|...+-
T Consensus 80 ~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 80 CGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp TTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999999999 555 66899999999999999999999999974 36899987653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=0.00013 Score=67.48 Aligned_cols=121 Identities=7% Similarity=0.025 Sum_probs=87.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 003829 613 YGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKE 691 (793)
Q Consensus 613 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 691 (793)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 356799999999999999986 788999999999999999999999999999986 454 4555555555544433333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003829 692 ASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 737 (793)
Q Consensus 692 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 737 (793)
+..........+ .| +...+...+..+...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 322211111111 22 2344556677788999999999999999874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.00038 Score=58.59 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-
Q 003829 645 MYMYSRSENFARAEDVLREILAKGI-KP----------DIISYNTVIFAYCRNGRMKEASRIFSEMRDS-----GLVPD- 707 (793)
Q Consensus 645 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 707 (793)
+..+...|++++|+..|++.++... .| ....|+.+..+|...|++++|.+.+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4455667888888888888875310 01 1357888999999999999999999998852 12222
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 708 ----VITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 708 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
..++..++.+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 13578899999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00099 Score=50.13 Aligned_cols=76 Identities=8% Similarity=-0.021 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 003829 673 IISYNTVIFAYCRNGRMKEASRIFSEMRDS-----GLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNT 745 (793)
Q Consensus 673 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 745 (793)
...+-.++..+.+.|++++|..+|+++++. ...++ ..++..++.+|.+.|++++|+..++++++. .|+ ..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRA 82 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHH
Confidence 334456778888888888888888888752 11222 367888888899999999999999998874 565 556
Q ss_pred HHHHH
Q 003829 746 YNSIV 750 (793)
Q Consensus 746 ~~~l~ 750 (793)
++.+.
T Consensus 83 ~~Nl~ 87 (95)
T d1tjca_ 83 NGNLK 87 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.10 E-value=0.0058 Score=49.26 Aligned_cols=111 Identities=6% Similarity=-0.002 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 003829 653 NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEAL 728 (793)
Q Consensus 653 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 728 (793)
|+++|+..|++..+.| +......|. .....+.++|.+++++..+.| +...+..|+..|.. ..+.++|+
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 4556666666665554 212222222 123345667777777766644 34445555555553 34567777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCC
Q 003829 729 DVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 729 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 774 (793)
++|++..+.| ++.....|+..|.. ..+.++|..+++++.+.+.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777776654 34445555555544 3467777777777776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.76 E-value=0.02 Score=45.86 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 003829 617 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEA 692 (793)
Q Consensus 617 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 692 (793)
.++++|.++|++..+.|. ......|. .....+.++|...+++..+.| +......|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 367899999999988872 22333333 344568999999999999876 56666677777764 4578999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 003829 693 SRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGC 739 (793)
Q Consensus 693 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 739 (793)
.++|++..+.| +......|+..|.. ..+.++|.+++++..+.|.
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999999965 45667778877775 4679999999999988773
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.0049 Score=47.58 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 003829 704 LVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 779 (793)
Q Consensus 704 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 779 (793)
..+...+--.+++++.++.+ .++++.+++++.+.+ +.+ ...+..|+-+|.+.|++++|+.+++++++.+|++...
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 34566777788888887755 578999999988743 223 4677788889999999999999999999999998665
Q ss_pred H-HHHHH
Q 003829 780 L-ECKLS 785 (793)
Q Consensus 780 ~-~~~l~ 785 (793)
. ...+|
T Consensus 110 ~~L~~~I 116 (124)
T d2pqrb1 110 GALKSMV 116 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3 34444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=1.7 Score=42.68 Aligned_cols=412 Identities=11% Similarity=0.027 Sum_probs=187.8
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCH
Q 003829 289 CRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK--CRRPKEAMQVLREMKINGCLP-SIVTYNSLISAYARDGLL 365 (793)
Q Consensus 289 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 365 (793)
..+.|+..++.++...+... | ...|-..-..-.. .....+...++++- ...| ....-...+..+.+.+++
T Consensus 16 a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~---p~~P~~~~lr~~~l~~L~~~~~w 88 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARREDW 88 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhccCH
Confidence 44557777776666665322 2 3333333222222 22344444433331 1111 111122334556666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003829 366 EEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (793)
Q Consensus 366 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (793)
.+.++.+. ..+.+...-+....+....|+.++|...+..+-..|.. ....+..+...+.+.|
T Consensus 89 ~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~------------ 150 (450)
T d1qsaa1 89 RGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG------------ 150 (450)
T ss_dssp HHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT------------
T ss_pred HHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcC------------
Confidence 55443321 12334444455666666777777776666655444322 1112222222222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 003829 446 NKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLS 525 (793)
Q Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 525 (793)
..+...+-.-+......|+...|..+...+-. .........+.....-..... .. ... ..+..
T Consensus 151 -----~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~---~~---~~~--~~~~~ 213 (450)
T d1qsaa1 151 -----KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT---FA---RTT--GATDF 213 (450)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH---HH---HHS--CCCHH
T ss_pred -----CCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH---HH---hcC--CCChh
Confidence 12233333333344455666666555433211 122233333333322222211 11 111 11333
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhcCCCCCCHhhHHHHHHH----HHcCCCHHHHHHHHHHHHhHHHHHHHHHCCC
Q 003829 526 TYNAVLAALAR--GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHA----YANGREIDQMLALSEEIYSERAFLELKKKGF 599 (793)
Q Consensus 526 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (793)
....+..++.+ ..+.+.+..++....... ..+...+..+... ....+..+.+..+..... ..
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~---------~~-- 281 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI---------MR-- 281 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH---------HT--
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc---------cc--
Confidence 32223333222 245667777776655432 1222222222221 223455566655544321 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003829 600 SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTV 679 (793)
Q Consensus 600 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 679 (793)
..+.......+......++...+...+..+.... .......-=+..++...|+.++|...|..+... ++ |...
T Consensus 282 ~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~ 354 (450)
T d1qsaa1 282 SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPM 354 (450)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHH
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHH
Confidence 2233333334444455667777777776664321 112222334556677777777777777777642 22 3222
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHCCCCCC-HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003829 680 IFAYCRNGR-MKEASRIFSEMRDSGLVPD-VI---TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 754 (793)
Q Consensus 680 ~~~~~~~g~-~~~A~~~~~~~~~~~~~p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 754 (793)
+.+ .+.|. +.-.. . .....++ .. .-...+..+...|...+|...+..+... .+......++....
T Consensus 355 LAa-~~Lg~~~~~~~----~--~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~ 424 (450)
T d1qsaa1 355 VAA-QRIGEEYELKI----D--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAF 424 (450)
T ss_dssp HHH-HHTTCCCCCCC----C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHH-HHcCCCCCCCc----C--CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 221 11121 00000 0 0000000 00 0123456777889999999999888753 24556667788888
Q ss_pred ccCCHHHHHHHHHHHhh
Q 003829 755 KLNQRYEAITFVNNLSK 771 (793)
Q Consensus 755 ~~g~~~~A~~~~~~~~~ 771 (793)
+.|.++.|+....++..
T Consensus 425 ~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 425 NNQWWDLSVQATIAGKL 441 (450)
T ss_dssp HTTCHHHHHHHHHHTTC
T ss_pred HCCChhHHHHHHHHHHc
Confidence 99999999988877643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.91 E-value=0.52 Score=35.51 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003829 615 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 694 (793)
Q Consensus 615 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 694 (793)
-.|.+++..+++.+.... .+..-||-++--....-+-+-..++++.+=+. +.. ...++......
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHHHH
Confidence 456777777777776653 24444444444433334444444444443321 111 12233333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 003829 695 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 774 (793)
Q Consensus 695 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 774 (793)
.+-.+ .-+....+..+..+.++|+-+.-.++++.+.+. -++++.....++.+|.+.|...+|.++++++-+.|.
T Consensus 78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33221 113345566667778888888888888887664 477888888888999999999999999998888875
Q ss_pred C
Q 003829 775 H 775 (793)
Q Consensus 775 ~ 775 (793)
.
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.16 Score=38.83 Aligned_cols=63 Identities=8% Similarity=0.029 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003829 672 DIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVP-DV-ITYNTFVASYAADSLFVEALDVVRYMIK 736 (793)
Q Consensus 672 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 736 (793)
...+--.+++++.++. +.+++..+|+++.+. .| +. ..+..|+.+|.+.|++++|.++++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444445555555443 345566666666652 22 22 3445556666666666666666666665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.60 E-value=2 Score=32.27 Aligned_cols=140 Identities=12% Similarity=0.148 Sum_probs=70.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003829 359 YARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEM 438 (793)
Q Consensus 359 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 438 (793)
+.-.|.+++..+++.+..... +..-|+.+|--....-+-+...++++.+-+. .| ...+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 334566666666666665532 4444555555555544544444444443221 11 0122233322
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 003829 439 MKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEA 518 (793)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 518 (793)
...+-.+. .+..-.+..+..+.+.|+-++-.++++++.+.+ .+++.....+..+|.+.|...++.+++.++-++
T Consensus 76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 22222211 133344445555566666666666666655532 445666666666666666666666666666666
Q ss_pred CC
Q 003829 519 GV 520 (793)
Q Consensus 519 ~~ 520 (793)
|.
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.60 E-value=0.64 Score=33.13 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003829 689 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 751 (793)
Q Consensus 689 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 751 (793)
.=++.+-++.+...++.|++.+..+.+++|.+.+++.-|+++++-...+ +.++..+|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 3455666666666777788877788888888888888888888777654 3334556655554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.38 E-value=10 Score=36.71 Aligned_cols=363 Identities=10% Similarity=0.020 Sum_probs=193.7
Q ss_pred CCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003829 167 GNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITY 246 (793)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 246 (793)
++.+.........+..+++.+++......+ . ..+.+...-+....+....|+.++|...+..+-..|.. ....+
T Consensus 66 p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c 139 (450)
T d1qsaa1 66 PTLPPARTLQSRFVNELARREDWRGLLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC 139 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH
T ss_pred CCChhHHHHHHHHHHHHHhccCHHHHHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHH
Confidence 444445555555566777777765533322 1 12335666666777777777777777777776655421 22333
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003829 247 NVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGK 326 (793)
Q Consensus 247 ~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 326 (793)
..+...+.+.| . .+...+-.-+......|+...|..+...+-. .........+....
T Consensus 140 ~~l~~~~~~~~-----------------~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~- 196 (450)
T d1qsaa1 140 DKLFSVWRASG-----------------K-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLAN- 196 (450)
T ss_dssp HHHHHHHHHTT-----------------C-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcC-----------------C-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHh-
Confidence 44444443333 1 2333333334444555777777666543321 12233344444332
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCH
Q 003829 327 CRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR--DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF----EKAGKD 400 (793)
Q Consensus 327 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~ 400 (793)
+...+...... ...+......+..++.+ ..+.+.|..++........ .+......+-... ...+..
T Consensus 197 --~p~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~ 268 (450)
T d1qsaa1 197 --NPNTVLTFART-----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVT 268 (450)
T ss_dssp --CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCC
T ss_pred --ChHhHHHHHhc-----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCch
Confidence 22333222221 22233333333333332 3578888888888776532 2332232222222 235667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 003829 401 ESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (793)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 480 (793)
+.+..++......+ .+.....-.+......+++..+...+..+.... .......-=+..++...|+.++|...|...
T Consensus 269 ~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~ 345 (450)
T d1qsaa1 269 DEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQL 345 (450)
T ss_dssp HHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 77888887776653 345555556666677889999988888775321 111222223457788899999999999887
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 003829 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLST---YNAVLAALARGGMWEQSEKIFAEMKGGRCKP 557 (793)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 557 (793)
... ++ -|..|...-... .+.-... -...... .... -..-+..+...|+...|...+..+... .
T Consensus 346 a~~---~~--fYG~LAa~~Lg~-~~~~~~~----~~~~~~~-~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~ 411 (450)
T d1qsaa1 346 MQQ---RG--FYPMVAAQRIGE-EYELKID----KAPQNVD-SALTQGPEMARVRELMYWNLDNTARSEWANLVKS---K 411 (450)
T ss_dssp HTS---CS--HHHHHHHHHTTC-CCCCCCC----CCCSCCC-CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C
T ss_pred hcC---CC--hHHHHHHHHcCC-CCCCCcC----CCCccHH-HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---C
Confidence 642 22 333333222211 1100000 0000000 0000 112345677889999999999988753 3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHH
Q 003829 558 NELTYSSLLHAYANGREIDQMLALSE 583 (793)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (793)
+......+.....+.|.++.|+....
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 55666677777889999999887644
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.34 E-value=5.9 Score=28.10 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003829 618 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 680 (793)
Q Consensus 618 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 680 (793)
+.-++.+-++.+...+.-|++.+..+.+.+|.+.+++.-|.++++-+..+ ...+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 45566666777777777888888888888888888888888888877754 233444555554
|