Citrus Sinensis ID: 003835

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790--
MSLPNKRTASNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
ccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHcEEccccEEEEEcHHHHcHHHHHHHHcccHHHHHHHHHHHHHccHHHcccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEccccEEEEEEEEEEcHHHHHHHccccHHHHHHHHHHHHHccHHHHcccccccccccccEEEEcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mslpnkrtasnnnsnnyspsAMKKAKSQAVACSVDtanknglhhdndavfdpssisldddlkpdepRQQAAANLsrkkaqppqpaKKLVIKLLkakptlptnfeeDTWAKLKLAIKAIFlkqptscdlEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDrtyvkqtpnvrSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGiysesfekpfleCTSEFYAAEGMkymqqsdvpdyLKHVEIRLHEEHERCLLyldvstrkpLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTghgivmdeekDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLragnkgtseeelEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSqartklpsgiemSVHVlttgywptyppmdvrlpheLNVYQDIFKEFYLSKYSGRRLMWQNslghcvlkaefpkgkKELAVSLFQLSFQdikdatgiEDKELRRTLQSLACGKvrvlqklpkgrdvedddsfvfnegftaplyrIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQlkfpikpaDLKKRIESLIDReylerdknnpqiynyla
mslpnkrtasnnnsnnysPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAAnlsrkkaqppqpaKKLVIKLLKAkptlptnfeEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAgnkgtseeelegtlDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQssqartklpsgiEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRtlqslacgkvrvlqklpkgrdvedddsfvfnegftaplyrikVNAIQMKETVeentsttervfqdrqyqVDAAIVRIMKTRKVLSHTLLITELFqqlkfpikpadLKKRIESlidreylerdknnpqiynyla
MSLPNKRTAsnnnsnnyspsAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRkkaqppqpakklvikllkakPTLPTNFEEDTWaklklaikaiflkQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
***************************************************************************************LVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL************EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASI****************************************************IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVE****TTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYL**************
*****************************************************************************************************NFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL*************GTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQ*S***TKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK**DVEDDDSFVFNEGFTAPLYRIK*********************QDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
******************************ACSVDTANKNGLHHDNDAVFDPSSISLDDDLK***********************KKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGN********EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINE***********LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
************************************************************************************AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLPNKRTASNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query792 2.2.26 [Sep-21-2011]
Q8LGH4792 Cullin-4 OS=Arabidopsis t yes no 0.979 0.979 0.794 0.0
A2A432970 Cullin-4B OS=Mus musculus yes no 0.896 0.731 0.593 0.0
Q13620913 Cullin-4B OS=Homo sapiens yes no 0.896 0.777 0.595 0.0
Q13619759 Cullin-4A OS=Homo sapiens no no 0.891 0.930 0.587 0.0
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.897 0.936 0.578 0.0
Q54CS2802 Cullin-4 OS=Dictyostelium yes no 0.904 0.892 0.483 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium no no 0.888 0.915 0.401 1e-150
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.887 0.960 0.392 1e-145
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.883 0.956 0.395 1e-144
Q6GPF3768 Cullin-3-B OS=Xenopus lae N/A no 0.880 0.907 0.392 1e-141
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1260 bits (3260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/808 (79%), Positives = 692/808 (85%), Gaps = 32/808 (3%)

Query: 1   MSLPNKRTA----SNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSIS 56
           MSLP KR+     S ++ ++YS   MKKAK             N LHH       P++  
Sbjct: 1   MSLPTKRSTFSAASASDDSSYSSPPMKKAK-------------NDLHHSPQ---HPNTAD 44

Query: 57  LDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIK 116
                  +E    AAANLSRKKA  PQP KK VIKL KAKPTLPTNFEE+TW KL+ AI+
Sbjct: 45  KVVGFHMEEDPTPAAANLSRKKATLPQPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIR 104

Query: 117 AIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVF 176
           AIFLK+  S DLE LYQAV++LCLHK+ G LY +IEKECEEHISAA++SLVGQ+ DL VF
Sbjct: 105 AIFLKKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVF 164

Query: 177 LSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHK 236
           LS VE+CWQD CDQMLMIR IAL LDR YV Q PNVRSLW+MGLQLFRK+LS   EVE +
Sbjct: 165 LSRVEKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQR 224

Query: 237 TVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYM 296
           TV GLL MIE+ERL EAV+RTLL+HLLKMFTALGIY ESFEKPFLE TSEFYAAEGMKYM
Sbjct: 225 TVKGLLSMIEKERLAEAVNRTLLSHLLKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYM 284

Query: 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLM 356
           QQSDVP+YLKHVE RLHEE+ERC+LY+D  TRKPLI T ERQLLERHI  +L+KGFT LM
Sbjct: 285 QQSDVPEYLKHVEGRLHEENERCILYIDAVTRKPLITTVERQLLERHILVVLEKGFTTLM 344

Query: 357 DGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASL 416
           DG RTEDLQRM +LFSRVNALESLRQAL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASL
Sbjct: 345 DGRRTEDLQRMQTLFSRVNALESLRQALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASL 404

Query: 417 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGT 476
           D IWE+SF KNE+F NTIKD+FE+LINLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  
Sbjct: 405 DIIWEESFYKNESFGNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELESV 464

Query: 477 LDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE 536
           L+KVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE
Sbjct: 465 LEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE 524

Query: 537 GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQ 596
           GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQ
Sbjct: 525 GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQ 584

Query: 597 DIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ------------LSFQ 644
           DIFKEFYLSKYSGRRLMWQNSLGHCVLKA+F KGKKELAVSLFQ            LSF+
Sbjct: 585 DIFKEFYLSKYSGRRLMWQNSLGHCVLKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFE 644

Query: 645 DIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNA 704
           DIKD+T IEDKELRRTLQSLACGKVRVLQK PKGRDVED D F FN+ F APLYRIKVNA
Sbjct: 645 DIKDSTSIEDKELRRTLQSLACGKVRVLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNA 704

Query: 705 IQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD 764
           IQMKETVEENTSTTERVFQDRQYQ+DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD
Sbjct: 705 IQMKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD 764

Query: 765 LKKRIESLIDREYLERDKNNPQIYNYLA 792
           LKKRIESLIDREYLER+K+NPQIYNYLA
Sbjct: 765 LKKRIESLIDREYLEREKSNPQIYNYLA 792
Component of the CUL4-RBX1-CDD (COP10-DDB1a-DET1) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Participates in the CDD complex to light-mediated control of development. May repress photomorphogenesis through enhancing COP1 E3 ubiquitin-protein ligase activity. Acts together with the CUL4-DDB1-COP1-SPA E3 ubiquitin-protein ligase complexes in the repression of photomorphogenesis and flowering time. Component ot the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex which mediates ubiquitination and subsequent degradation of AKIN10. Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling and may target ABI5 for degradation.
Arabidopsis thaliana (taxid: 3702)
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query792
359483875828 PREDICTED: cullin-4 [Vitis vinifera] 0.994 0.951 0.865 0.0
297740729802 unnamed protein product [Vitis vinifera] 0.970 0.958 0.885 0.0
224116118811 predicted protein [Populus trichocarpa] 0.997 0.974 0.874 0.0
356555528788 PREDICTED: cullin-4-like [Glycine max] 0.979 0.984 0.878 0.0
224077640785 predicted protein [Populus trichocarpa] 0.973 0.982 0.885 0.0
147775823806 hypothetical protein VITISV_010491 [Viti 0.969 0.952 0.876 0.0
350538715785 cullin 4 [Solanum lycopersicum] gi|15989 0.972 0.980 0.877 0.0
449463897833 PREDICTED: cullin-4-like [Cucumis sativu 0.967 0.919 0.872 0.0
449506653833 PREDICTED: LOW QUALITY PROTEIN: cullin-4 0.967 0.919 0.870 0.0
255557289807 cullin, putative [Ricinus communis] gi|2 0.957 0.939 0.871 0.0
>gi|359483875|ref|XP_002270764.2| PREDICTED: cullin-4 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1432 bits (3708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/832 (86%), Positives = 739/832 (88%), Gaps = 44/832 (5%)

Query: 1   MSLPNKRTAS-------NNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPS 53
           MS P KR+ S          S ++ P  MKKAKSQAVACS+D   KNGL          S
Sbjct: 1   MSHPTKRSLSNTTTSSSGGASPHFPP--MKKAKSQAVACSLDP--KNGLQPPPHPPPPSS 56

Query: 54  SISLDDDLKPDE-----------------PRQQAA---ANLSRKKAQPPQPAKK-LVIKL 92
               DDD  P                    R  A    ANLSRKKA PPQPAKK LVIKL
Sbjct: 57  HHFPDDDFDPSAMALDDDLKPDDADAAACSRPSAGGVTANLSRKKATPPQPAKKQLVIKL 116

Query: 93  LKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIE 152
           LKAKPTLPTNFEEDTWAKLK AI AIFLKQP  CDLEKLYQAVNDLCLHKMGGNLYQRIE
Sbjct: 117 LKAKPTLPTNFEEDTWAKLKSAISAIFLKQPDPCDLEKLYQAVNDLCLHKMGGNLYQRIE 176

Query: 153 KECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNV 212
           KECE HI AA++SLVGQSPDLVVFLSLVE+CWQDLCDQMLMIRGIALYLDRTYVKQTPNV
Sbjct: 177 KECESHIRAALQSLVGQSPDLVVFLSLVEKCWQDLCDQMLMIRGIALYLDRTYVKQTPNV 236

Query: 213 RSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIY 272
           RSLWDMGLQLFRK+LS   EVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIY
Sbjct: 237 RSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIY 296

Query: 273 SESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLI 332
            ESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD STRKPL+
Sbjct: 297 LESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDASTRKPLV 356

Query: 333 ATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTG 392
           ATAERQLLERHISAILDKGF MLMDG+R EDLQRMY LFSRVNALESLRQAL+ YIRRTG
Sbjct: 357 ATAERQLLERHISAILDKGFMMLMDGNRIEDLQRMYLLFSRVNALESLRQALSSYIRRTG 416

Query: 393 HGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAEL 452
            GIVMDEEKDKDMVS LLEFKASLDTIWE+SFS+NEAFCNTIKDAFE+LINLRQNRPAEL
Sbjct: 417 QGIVMDEEKDKDMVSCLLEFKASLDTIWEESFSRNEAFCNTIKDAFEHLINLRQNRPAEL 476

Query: 453 IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS 512
           IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS
Sbjct: 477 IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS 536

Query: 513 IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHV 572
           IDAEKSMI+KLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP+GIEMSVHV
Sbjct: 537 IDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPTGIEMSVHV 596

Query: 573 LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKK 632
           LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKK
Sbjct: 597 LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKK 656

Query: 633 ELAVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD 680
           ELAVSLFQ            LSFQDIKD+TGIEDKELRRTLQSLACGKVRVLQKLPKGR+
Sbjct: 657 ELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRE 716

Query: 681 VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTR 740
           VEDDDSF+FNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTR
Sbjct: 717 VEDDDSFMFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTR 776

Query: 741 KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792
           KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
Sbjct: 777 KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 828

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297740729|emb|CBI30911.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116118|ref|XP_002332001.1| predicted protein [Populus trichocarpa] gi|222874769|gb|EEF11900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555528|ref|XP_003546083.1| PREDICTED: cullin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|224077640|ref|XP_002305340.1| predicted protein [Populus trichocarpa] gi|222848304|gb|EEE85851.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147775823|emb|CAN75926.1| hypothetical protein VITISV_010491 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538715|ref|NP_001234356.1| cullin 4 [Solanum lycopersicum] gi|159895408|gb|ABX09988.1| cullin 4 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449463897|ref|XP_004149667.1| PREDICTED: cullin-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449506653|ref|XP_004162809.1| PREDICTED: LOW QUALITY PROTEIN: cullin-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255557289|ref|XP_002519675.1| cullin, putative [Ricinus communis] gi|223541092|gb|EEF42648.1| cullin, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query792
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 0.984 0.984 0.761 4.29999999891e-315
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 0.878 0.787 0.586 1.5e-218
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.877 0.772 0.585 2.2e-217
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.877 0.761 0.585 2.2e-217
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.877 0.720 0.585 2.8e-217
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.877 0.716 0.583 2.8e-217
UNIPROTKB|E2RMN1982 CUL4B "Uncharacterized protein 0.877 0.707 0.583 4.5e-217
ZFIN|ZDB-GENE-041008-208885 cul4b "cullin 4B" [Danio rerio 0.877 0.785 0.587 5.2e-216
UNIPROTKB|Q13619759 CUL4A "Cullin-4A" [Homo sapien 0.876 0.914 0.583 1.1e-213
UNIPROTKB|F1P2U1741 CUL4A "Uncharacterized protein 0.877 0.937 0.576 1.4e-213
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3022 (1068.9 bits), Expect = 4.3e-315, P = 4.3e-315
 Identities = 612/804 (76%), Positives = 657/804 (81%)

Query:     1 MSLPNKRTAXXXXXXXXXXXAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDD 60
             MSLP KR+                   +A         KN LHH       P++      
Sbjct:     1 MSLPTKRSTFSAASASDDSSYSSPPMKKA---------KNDLHHSPQ---HPNTADKVVG 48

Query:    61 LKPDEPRQQAAANLSRXXXXXXXXXXXXXXXXXXXXPTLPTNFEEDTWXXXXXXXXXXXX 120
                +E    AAANLSR                    PTLPTNFEE+TW            
Sbjct:    49 FHMEEDPTPAAANLSRKKATLPQPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIRAIFL 108

Query:   121 XQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLV 180
              +  S DLE LYQAV++LCLHK+ G LY +IEKECEEHISAA++SLVGQ+ DL VFLS V
Sbjct:   109 KKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLSRV 168

Query:   181 ERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTG 240
             E+CWQD CDQMLMIR IAL LDR YV Q PNVRSLW+MGLQLFRK+LS   EVE +TV G
Sbjct:   169 EKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQRTVKG 228

Query:   241 LLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSD 300
             LL MIE+ERL EAV+RTLL+HLLKMFTALGIY ESFEKPFLE TSEFYAAEGMKYMQQSD
Sbjct:   229 LLSMIEKERLAEAVNRTLLSHLLKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSD 288

Query:   301 VPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHR 360
             VP+YLKHVE RLHEE+ERC+LY+D  TRKPLI T ERQLLERHI  +L+KGFT LMDG R
Sbjct:   289 VPEYLKHVEGRLHEENERCILYIDAVTRKPLITTVERQLLERHILVVLEKGFTTLMDGRR 348

Query:   361 TEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIW 420
             TEDLQRM +LFSRVNALESLRQAL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASLD IW
Sbjct:   349 TEDLQRMQTLFSRVNALESLRQALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASLDIIW 408

Query:   421 EQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKV 480
             E+SF KNE+F NTIKD+FE+LINLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  L+KV
Sbjct:   409 EESFYKNESFGNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELESVLEKV 468

Query:   481 LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK 540
             LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK
Sbjct:   469 LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK 528

Query:   541 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFK 600
             DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQDIFK
Sbjct:   529 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQDIFK 588

Query:   601 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ------------LSFQDIKD 648
             EFYLSKYSGRRLMWQNSLGHCVLKA+F KGKKELAVSLFQ            LSF+DIKD
Sbjct:   589 EFYLSKYSGRRLMWQNSLGHCVLKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFEDIKD 648

Query:   649 ATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK 708
             +T IEDKELRRTLQSLACGKVRVLQK PKGRDVED D F FN+ F APLYRIKVNAIQMK
Sbjct:   649 STSIEDKELRRTLQSLACGKVRVLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNAIQMK 708

Query:   709 ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKR 768
             ETVEENTSTTERVFQDRQYQ+DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKR
Sbjct:   709 ETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKR 768

Query:   769 IESLIDREYLERDKNNPQIYNYLA 792
             IESLIDREYLER+K+NPQIYNYLA
Sbjct:   769 IESLIDREYLEREKSNPQIYNYLA 792
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA;IMP
GO:0048366 "leaf development" evidence=RCA;IMP
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0000209 "protein polyubiquitination" evidence=IDA
GO:0009908 "flower development" evidence=IMP
GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA;IMP
GO:0010154 "fruit development" evidence=IMP
GO:0010182 "sugar mediated signaling pathway" evidence=RCA;IMP
GO:0048825 "cotyledon development" evidence=RCA;IMP
GO:0006281 "DNA repair" evidence=RCA;IMP
GO:0048575 "short-day photoperiodism, flowering" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-208 cul4b "cullin 4B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q13619 CUL4A "Cullin-4A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2U1 CUL4A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13620CUL4B_HUMANNo assigned EC number0.59530.89640.7776yesno
Q54CS2CUL4_DICDINo assigned EC number0.48370.90400.8927yesno
O14122CUL4_SCHPONo assigned EC number0.32030.88250.9523yesno
Q17391CUL3_CAEELNo assigned EC number0.34420.87240.8893yesno
Q8LGH4CUL4_ARATHNo assigned EC number0.79450.97970.9797yesno
A2A432CUL4B_MOUSENo assigned EC number0.59390.89640.7319yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
cul4
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (802 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028385001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1089 aa)
    • • 0.735
GSVIVG00035351001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1219 aa)
    • • 0.581
GSVIVG00036331001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (329 aa)
    • • 0.534
GSVIVG00016431001
SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)
    • • 0.494
26N20_20
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (551 aa)
      • 0.483
GSVIVG00034065001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (122 aa)
    • • 0.465
GSVIVG00023341001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (433 aa)
   •• • 0.446

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query792
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-149
smart00182143 smart00182, CULLIN, Cullin 7e-57
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 1e-26
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 1e-25
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  601 bits (1552), Expect = 0.0
 Identities = 270/609 (44%), Positives = 371/609 (60%), Gaps = 28/609 (4%)

Query: 108 WAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLV 167
           W KL  AI  I LK  +S D  +LY AV +   HK+G  LY R+++  EE+++A ++S++
Sbjct: 1   WEKLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVAALLKSIL 60

Query: 168 GQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYL 227
               +  V L    + W      M ++  I +YL+R YVK+      ++++GL ++R+ L
Sbjct: 61  ENDDE--VLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDG-VYELGLDIWRESL 117

Query: 228 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLE 282
             +  ++ K +  LLR+IE+ERLGE +DR+L+ ++L MF  LG     +Y E FEKPFLE
Sbjct: 118 --FDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPFLE 175

Query: 283 CTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLER 342
            TSEFY  E  K++Q++ V +Y+K VE RL EE ER  LYL  ST K LI   E+ L+E+
Sbjct: 176 ATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLIEK 235

Query: 343 HISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD--- 398
           H+  +    F  L+D  + EDL+RMY L SRV N LE LR+    +I++ G   V D   
Sbjct: 236 HLEFLH-SEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAVSDLAV 294

Query: 399 EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLD 458
           E   KD V +LLE     D++  ++F+ +  F N +  AFE  IN   ++ AEL+AK+ D
Sbjct: 295 ETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINSNSSKSAELLAKYCD 354

Query: 459 EKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKS 518
             L+   KG +EEELE  LDK++VLF++I+ KDVFE FY+K LAKRLL G SAS DAEK 
Sbjct: 355 SLLKKSLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKK 414

Query: 519 MISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQAR-TKLPSGIEMSVHVLTTGY 577
           MI KLK ECG QFT+KLE MFKDI LSKE+N SFK   +     L  GI++SV VL+TG+
Sbjct: 415 MIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGF 474

Query: 578 WPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVS 637
           WPT P     LP EL    + F+EFY  K+SGR+L W +SLG   LKAEF     EL VS
Sbjct: 475 WPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVS 534

Query: 638 LFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDD 685
            +Q            L+ +++ +ATG+ D  LRRTLQSL   KV +L K+PKG +   + 
Sbjct: 535 TYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLLLTKIPKGEEFSPNT 594

Query: 686 SFVFNEGFT 694
            F  N  FT
Sbjct: 595 VFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 792
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.85
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.83
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 97.95
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.62
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 86.24
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 81.72
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-147  Score=1201.91  Aligned_cols=642  Identities=66%  Similarity=1.012  Sum_probs=625.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCcccHHHHHHHHHHH
Q 003835          147 LYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQ-TPNVRSLWDMGLQLFRK  225 (792)
Q Consensus       147 LY~~l~~~~~~~l~~~~~~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~-~~~~~sI~dlgL~lFr~  225 (792)
                      ||++|+..|++|+...+.++.....|.+.||..+.++|+.|+.++.+|++||.||||+|+.+ ++.++|||+||+.+||.
T Consensus         2 ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LFR~   81 (661)
T KOG2167|consen    2 LYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLFRA   81 (661)
T ss_pred             hHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHHHH
Confidence            89999999999999988888777667789999999999999999999999999999999999 88899999999999999


Q ss_pred             Hhcc--ccchHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhh
Q 003835          226 YLSS--YSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPD  303 (792)
Q Consensus       226 ~v~~--~~~l~~~l~~~iL~lI~~eR~g~~id~~llk~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~e  303 (792)
                      +++.  .+.+..++.++++..|+++|.|+++|+.+|++++.|+.++++|.+.||+.|++.+.++|++++...+++..+++
T Consensus        82 ~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v~e  161 (661)
T KOG2167|consen   82 HFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEVPE  161 (661)
T ss_pred             HhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhcccHH
Confidence            9998  67889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHH
Q 003835          304 YLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQ  382 (792)
Q Consensus       304 YL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~  382 (792)
                      ||++|+.++.+|.+|+..|+|.+|++++..+++++||..|++.|+..|+..+++.++..++.+||.|++++ ++...++.
T Consensus       162 Yl~h~e~~l~~E~~~~i~~~D~st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~q~~d~~rly~L~~r~~~g~l~l~q  241 (661)
T KOG2167|consen  162 YLEHVEGRLEEENDRVIEYFDSSTKKPLIATVERCLLSRHLDLILTKGLDSLVDMRQTSDLTRLYMLFSRVQGGQLSLLQ  241 (661)
T ss_pred             HHHhhhhcccchHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcchHHhhhhhhccchHhHHHHHHHHhcchHHHHH
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHhhcccccCchhhHHHHHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 003835          383 ALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKN--EAFCNTIKDAFEYLINLRQNRPAELIAKFLDEK  460 (792)
Q Consensus       383 ~~~~yI~~~G~~iv~~~~~~~~~V~~Ll~l~~~~~~ii~~~F~~~--~~f~~~l~~af~~~iN~~~~~~~e~Laky~D~~  460 (792)
                      .|.+|+++.|..+|.|++.++.+|++|+.||++.|-++..||-.+  +.|.+++++||+.|+|.+.++|||+||+|.|.+
T Consensus       242 q~sdylk~~G~KlV~de~kDk~mVqELL~FK~k~Dii~~~sF~~~v~e~f~~~~~~afe~fink~~~rpAelIak~~dt~  321 (661)
T KOG2167|consen  242 QWSDYLKKPGFKLVIDEEKDKDMVQELLDFKKKVDIIVDESFLKYVAEKFLNSMSKAFETFINKRRNRPAELIAKYVDTK  321 (661)
T ss_pred             HHHHHHhcccceeccCchhhHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877  999999999999999999999999999999999


Q ss_pred             HhcCCCCCCHHHHHhhhhchheeeecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003835          461 LRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK  540 (792)
Q Consensus       461 Lr~~~k~~~~~e~e~~ld~i~~lF~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~kLk~ecG~~fT~kLe~Mfk  540 (792)
                      ||.|+|+.+|++++..+++++.|||||++|||||+||+++||||||.++|+|.|+|++|+++||.|||.+||+||||||+
T Consensus       322 Lr~gnk~~~d~~l~~~~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecgs~ft~kLegMfk  401 (661)
T KOG2167|consen  322 LRAGNKETSDEELEFVLDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECGSAFTYKLEGMFK  401 (661)
T ss_pred             HHhccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcchHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHHHHhcCCceeEEeecCcce
Q 003835          541 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGH  620 (792)
Q Consensus       541 Di~~S~~l~~~f~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~fY~~k~~gRkL~W~~~Lg~  620 (792)
                      ||++|++++..|+++.........++ +.|+|||.|+||+|++.++.||++|..+++.|+.||.++|+||+|.|+++||+
T Consensus       402 dme~sk~i~~~f~~~~~~~~~~~~~l-~~v~vlt~~yWpty~~~ev~Lp~em~~~~e~F~~fyl~k~sgrklqW~~~lg~  480 (661)
T KOG2167|consen  402 DMELSKEINRAFKQSKGANNRLEGNL-LTVNVLTMGYWPTYPPMEVLLPKEMRDCQEIFKKFYLGKHSGRKLQWQDSLGH  480 (661)
T ss_pred             hHHHHHHHHHHHHHHHHhhccCcCCc-eEEEeecccccCCCCchhccCCHHHHHHHHHHHHhccccccCcceeeecCCcc
Confidence            99999999999999855434455566 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCeeEEEEeecc------------ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEE
Q 003835          621 CVLKAEFPKGKKELAVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFV  688 (792)
Q Consensus       621 ~~i~~~f~~~~~el~vs~~Q------------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~  688 (792)
                      |+|+|.|+.|++||+||+||            +|++||.++|||.+.||+|+|+||+|||.|+|.++|+|+++.+||.|.
T Consensus       481 ~v~ka~f~~gkkel~~slfq~~vll~fn~~~~~s~~ei~~~t~i~d~el~rtlqsl~cgr~rvl~~~pkg~~~~~~~~f~  560 (661)
T KOG2167|consen  481 CVLKAEFKEGKKELQVSLFQTLVLLMFNEGEGLSYEEIKESTGIEDIELRRTLQSLACGRARVLQKVPKGKEVEDGDKFI  560 (661)
T ss_pred             hhhhhhccCCchHHHHHHHHHhHhhccCCCCcccHHHHHHhccccHHHHHHHHHHHhcccceeeeeCCCCCCCCCCCEEE
Confidence            99999999999999999999            999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCCceeEEecccccccchhhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHH
Q 003835          689 FNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKR  768 (792)
Q Consensus       689 ~N~~Ft~~~~riki~~i~~ket~~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~  768 (792)
                      ||..|++|.+|||||+|++|||++|+++|.|+|.+||+++||||||||||+||+|+|+.||+|+++||+||+.| ++|+|
T Consensus       561 ~n~~f~~kl~rikinqi~~ke~~ee~~~~~e~v~~drqy~idaaivrimk~rk~l~h~~l~~el~~qlkfpv~~-d~kkr  639 (661)
T KOG2167|consen  561 VNDKFTHKLYRIKINQIQMKETVEENKSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVTELFNQLKFPVKP-DLKKR  639 (661)
T ss_pred             echhhcchhheehHhhhhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCCCCCh-hHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHhhhhcccccCCCCCCceeecC
Q 003835          769 IESLIDREYLERDKNNPQIYNYLA  792 (792)
Q Consensus       769 IE~LIereYl~Rd~~d~~~Y~YlA  792 (792)
                      ||+|||||||+|| +| +.|+|||
T Consensus       640 iesli~rey~erd-~n-~~y~yva  661 (661)
T KOG2167|consen  640 IESLIDREYLERD-DN-NIYNYVA  661 (661)
T ss_pred             HHHHHhHHHhccc-cc-ccccccC
Confidence            9999999999999 45 8999998

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query792
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 0.0
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 0.0
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 0.0
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 1e-85
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 1e-85
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 3e-84
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 3e-55
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 4e-52
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 5e-51
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 7e-51
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-43
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 2e-37
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 2e-35
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 3e-32
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 8e-29
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-25
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 1e-14
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 1e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 4e-09
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 6e-06
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 9e-06
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/710 (58%), Positives = 515/710 (72%), Gaps = 16/710 (2%)
Query: 97  PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
           P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE
Sbjct: 52  PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACE 111
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
           +H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+W
Sbjct: 112 DHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIW 171
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
           DMGL+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  LL M + L +Y +SF
Sbjct: 172 DMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSF 231
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
           E  FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + YLD ST+KPLIA  E
Sbjct: 232 ELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVE 291
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
           +QLL  H++AIL KG   L+D +R  DL +MY LFSRV    ++L Q  + YI+  G  I
Sbjct: 292 KQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 351
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
           V++ EKDKDMV  LL+FK  +D + E  F KNE F N +K++FE  IN R N+PAELIAK
Sbjct: 352 VINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAK 411
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
            +D KLRAGNK  ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 412 HVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDA 471
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSG-IEMSVHVLT 574
           EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++   SG I+++V++LT
Sbjct: 472 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS--DSGPIDLTVNILT 529
Query: 575 TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL 634
            GYWPTY PM+V L  E+   Q++FK FYL K+SGR+L WQ +LGH VLKAEF +GKKE 
Sbjct: 530 MGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEF 589
Query: 635 AVSLFQ------------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVE 682
            VSLFQ             SF++IK ATGIED ELRRTLQSLACGK RVL K PKG++VE
Sbjct: 590 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVE 649
Query: 683 DDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV 742
           D D F+FN  F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RK 
Sbjct: 650 DGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKT 709
Query: 743 LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 792
           L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK+NP  Y+Y+A
Sbjct: 710 LGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query792
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-116
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 1e-101
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 2e-97
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 2e-86
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-76
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 5e-35
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 1e-31
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 7e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 5e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  734 bits (1895), Expect = 0.0
 Identities = 425/739 (57%), Positives = 534/739 (72%), Gaps = 14/739 (1%)

Query: 67  RQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSC 126
            + AA   +  K      +KKLVIK  + +P LP N+ +DTW KL  A++A+        
Sbjct: 22  TKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRY 81

Query: 127 DLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQD 186
           +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD
Sbjct: 82  NLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141

Query: 187 LCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIE 246
            C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S   V+ KT+ G+L +IE
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201

Query: 247 RERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLK 306
           RER GEAVDR+LL  LL M + L +Y +SFE  FLE T+  YAAEG + MQ+ +VP+YL 
Sbjct: 202 RERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLN 261

Query: 307 HVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQR 366
           HV  RL EE +R + YLD ST+KPLIA  E+QLL  H++AIL KG   L+D +R  DL +
Sbjct: 262 HVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQ 321

Query: 367 MYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFS 425
           MY LFSRV    ++L Q  + YI+  G  IV++ EKDKDMV  LL+FK  +D + E  F 
Sbjct: 322 MYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQ 381

Query: 426 KNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFR 485
           KNE F N +K++FE  IN R N+PAELIAK +D KLRAGNK  ++EELE TLDK+++LFR
Sbjct: 382 KNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFR 441

Query: 486 FIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELS 545
           FI GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELS
Sbjct: 442 FIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELS 501

Query: 546 KEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLS 605
           K+I   FKQ  Q ++     I+++V++LT GYWPTY PM+V L  E+   Q++FK FYL 
Sbjct: 502 KDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLG 560

Query: 606 KYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQL------------SFQDIKDATGIE 653
           K+SGR+L WQ +LGH VLKAEF +GKKE  VSLFQ             SF++IK ATGIE
Sbjct: 561 KHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIE 620

Query: 654 DKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEE 713
           D ELRRTLQSLACGK RVL K PKG++VED D F+FN  F   L+RIK+N IQMKETVEE
Sbjct: 621 DSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEE 680

Query: 714 NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLI 773
             STTERVFQDRQYQ+DAAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLI
Sbjct: 681 QVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLI 740

Query: 774 DREYLERDKNNPQIYNYLA 792
           DR+Y+ERDK+NP  Y+Y+A
Sbjct: 741 DRDYMERDKDNPNQYHYVA 759
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query792
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.97
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.96
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.96
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.95
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 82.15
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
Probab=100.00  E-value=2.1e-156  Score=1402.87  Aligned_cols=707  Identities=60%  Similarity=0.962  Sum_probs=684.1

Q ss_pred             CcceeeecCCCCCCCCCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 003835           85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIR  164 (792)
Q Consensus        85 ~~k~~ik~~~~~~~~~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~~  164 (792)
                      ++|++|||||+.|.+|++|++++|..|++||++|+.+++.++|||+||++||++|++++|++||++|++.|+.|+..++.
T Consensus        40 ~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~  119 (759)
T 2hye_C           40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQIL  119 (759)
T ss_dssp             -CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999898999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 003835          165 SLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRM  244 (792)
Q Consensus       165 ~l~~~~~d~~~~L~~~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~l  244 (792)
                      .+.....+++.||..|..+|++|+.++.+|++||+||||+|+.++++.++||++||.+||++|+.++.+++++++++|++
T Consensus       120 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l  199 (759)
T 2hye_C          120 PFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL  199 (759)
T ss_dssp             HHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            77553334368999999999999999999999999999999999876799999999999999998777999999999999


Q ss_pred             HHHHhcCCcCChHHHHHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccC
Q 003835          245 IERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD  324 (792)
Q Consensus       245 I~~eR~g~~id~~llk~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~  324 (792)
                      |+++|+|+.||+.+|++++.||++|++|.+.||++||++|++||+.++++|+++.++++||++|+.+|++|.+||..||+
T Consensus       200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~  279 (759)
T 2hye_C          200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD  279 (759)
T ss_dssp             HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred             HHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCchhhH
Q 003835          325 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDK  403 (792)
Q Consensus       325 ~sT~~~L~~~l~~~LI~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~~~~  403 (792)
                      ++|.++|.++|+++||.+|++.|+++||..||++++.++|++||+||+++ ++++.|+..|++||++.|.+++.+.++++
T Consensus       280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~  359 (759)
T 2hye_C          280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDK  359 (759)
T ss_dssp             TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcccHH
Confidence            99999999999999999999999988999999999999999999999999 99999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCCCCHHHHHhhhhchhee
Q 003835          404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVL  483 (792)
Q Consensus       404 ~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~af~~~iN~~~~~~~e~Laky~D~~Lr~~~k~~~~~e~e~~ld~i~~l  483 (792)
                      .||+.||++|++|+.++.+||++|+.|..++++||+.|+|.+.+++||+||+|||.+||+|.|+.+++|+|..|++|+.|
T Consensus       360 ~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~l  439 (759)
T 2hye_C          360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMIL  439 (759)
T ss_dssp             THHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999877899999999999999999999999999999999999


Q ss_pred             eecccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHhhHHHHHHHHHHhhhccCCC
Q 003835          484 FRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP  563 (792)
Q Consensus       484 F~~i~~KD~Fe~~Yk~~LakRLL~~~s~s~d~E~~mi~kLk~ecG~~fT~kLe~MfkDi~~S~~l~~~f~~~~~~~~~~~  563 (792)
                      |+||++||+|++||+++||+|||+++|+|.|+|+.||++||.+||.+||+|||+||+||..|++++..|+++... ...+
T Consensus       440 f~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~  518 (759)
T 2hye_C          440 FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDS  518 (759)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             hhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998754 2334


Q ss_pred             CCcceEEEEeecCCCCCCCCCCccCChHHHHHHHHHHHHHHhcCCceeEEeecCcceEEEEEEecCCeeEEEEeecc---
Q 003835          564 SGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQ---  640 (792)
Q Consensus       564 ~~~~f~v~VLt~~~WP~~~~~~~~LP~~l~~~~~~F~~fY~~k~~gRkL~W~~~Lg~~~i~~~f~~~~~el~vs~~Q---  640 (792)
                      .+++|+|.|||+|+||.++..++.||++|+.+++.|++||..+|+||+|+|+|+||+|+|+++|++|+|+|+||+||   
T Consensus       519 ~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i  598 (759)
T 2hye_C          519 GPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV  598 (759)
T ss_dssp             CCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred             CCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHH
Confidence            57999999999999999998899999999999999999999999999999999999999999999999999999999   


Q ss_pred             ---------ccHHHHHHHhCCCHHHHHHHHHHhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccch
Q 003835          641 ---------LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETV  711 (792)
Q Consensus       641 ---------lt~~eI~~~T~i~~~eL~r~L~sL~~~k~kiL~k~p~~~~i~~~d~f~~N~~Ft~~~~riki~~i~~ket~  711 (792)
                               +|++||++.||||+++|+|+|++|+|+|.+||.++|+|+++.++|+|.||.+|+++++|||||+++.++++
T Consensus       599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~  678 (759)
T 2hye_C          599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV  678 (759)
T ss_dssp             HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred             HHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccc
Confidence                     89999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hhhhhhhHHHHhhhhhhhhHHHHHhhhcccccChHHHHHHHHHhcCCCCChHHHHHHHHHhhhhcccccCCCCCCceeec
Q 003835          712 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL  791 (792)
Q Consensus       712 ~e~~~t~e~v~~dR~~~i~AaIVRIMK~rK~l~h~~Li~ev~~~lrF~~~~~~iKk~IE~LIereYl~Rd~~d~~~Y~Yl  791 (792)
                      +|+++|+++|++||++.||||||||||+||+|+|++|+.||++|++|+|++.+||+|||+|||||||+||++|+++|+||
T Consensus       679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~Yl  758 (759)
T 2hye_C          679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYV  758 (759)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 003835          792 A  792 (792)
Q Consensus       792 A  792 (792)
                      |
T Consensus       759 A  759 (759)
T 2hye_C          759 A  759 (759)
T ss_dssp             C
T ss_pred             C
Confidence            8
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 792
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-111
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-100
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 1e-90
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 6e-83
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 1e-35
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 1e-32
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 4e-31
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  341 bits (875), Expect = e-111
 Identities = 173/347 (49%), Positives = 231/347 (66%), Gaps = 1/347 (0%)

Query: 100 PTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHI 159
           P N+ +DTW KL  A++A+        +LE+LYQAV +LC HK+   LY+++ + CE+H+
Sbjct: 1   PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHV 60

Query: 160 SAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMG 219
            A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMG
Sbjct: 61  QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMG 120

Query: 220 LQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKP 279
           L+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  LL M + L +Y +SFE  
Sbjct: 121 LELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELK 180

Query: 280 FLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL 339
           FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + YLD ST+KPLIA  E+QL
Sbjct: 181 FLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL 240

Query: 340 LERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 398
           L  H++AIL KG   L+D +R  DL +MY LFSRV    ++L Q  + YI+  G  IV++
Sbjct: 241 LGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 300

Query: 399 EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445
            EKDKDMV  LL+FK  +D + E  F KNE F N +K++FE  IN R
Sbjct: 301 PEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR 347
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query792
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.94
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.93
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-65  Score=561.98  Aligned_cols=346  Identities=50%  Similarity=0.836  Sum_probs=335.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 003835          100 PTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSL  179 (792)
Q Consensus       100 ~~~~~e~~W~~L~~AI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~~e~LY~~l~~~~~~~l~~~~~~l~~~~~d~~~~L~~  179 (792)
                      |++|+|++|..|++||+.|+.++++++|||+||++||++|++++|++||+++++.|++|+...+.++.....++..||..
T Consensus         1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~   80 (347)
T d2hyec2           1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKK   80 (347)
T ss_dssp             SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999998887765555689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCcCChHHH
Q 003835          180 VERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLL  259 (792)
Q Consensus       180 ~~~~W~~~~~~l~~i~~iF~YLDR~Yv~~~~~~~sI~dlgL~lFr~~v~~~~~l~~~l~~~iL~lI~~eR~g~~id~~ll  259 (792)
                      +.+.|++|+.++.+|++||+||||+|+.++++.++|+++|+.+|+++|+.++.+.++++++++++|+++|.|+.+|+.++
T Consensus        81 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll  160 (347)
T d2hyec2          81 INTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL  160 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence            99999999999999999999999999998876789999999999999998778999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccHHhhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHHHHH
Q 003835          260 NHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL  339 (792)
Q Consensus       260 k~~i~ml~~L~vY~~~FE~~fL~~T~~yY~~es~~~l~~~s~~eYL~~ve~~l~eE~~R~~~yL~~sT~~~L~~~l~~~L  339 (792)
                      ++++.|+..|++|.+.||++||++|.+||+.++.+|+++.++++|+.+|+.++++|.+||..||+++|.++|+++|+++|
T Consensus       161 ~~~~~~~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~L  240 (347)
T d2hyec2         161 RSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL  240 (347)
T ss_dssp             HHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhcccccCchhhHHHHHHHHHHHHHHHH
Q 003835          340 LERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDT  418 (792)
Q Consensus       340 I~~~~~~ll~~g~~~ll~~~~~~~L~~ly~L~~~~-~~l~~l~~~~~~yI~~~G~~iv~~~~~~~~~V~~Ll~l~~~~~~  418 (792)
                      |.+|.+.|+++||..||++++.++|++||+||+++ ++++.|+..|++||.+.|.+++.+.++++.||+.||++|++++.
T Consensus       241 i~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~~~~~~V~~ll~l~~k~~~  320 (347)
T d2hyec2         241 LGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDH  320 (347)
T ss_dssp             TTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhHHHHHHHHHHHhcC
Q 003835          419 IWEQSFSKNEAFCNTIKDAFEYLINLR  445 (792)
Q Consensus       419 ii~~~F~~~~~f~~~l~~af~~~iN~~  445 (792)
                      ++..||++|+.|.+++++||+.|||.+
T Consensus       321 li~~~F~~d~~f~~~l~~af~~~iNkr  347 (347)
T d2hyec2         321 VIEVCFQKNERFVNLMKESFETFINKR  347 (347)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence            999999999999999999999999974
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure