Citrus Sinensis ID: 003861
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 791 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M0Z3 | 776 | K(+) efflux antiporter 3, | yes | no | 0.917 | 0.935 | 0.711 | 0.0 | |
| O65272 | 1174 | K(+) efflux antiporter 2, | no | no | 0.638 | 0.430 | 0.393 | 5e-84 | |
| Q9ZTZ7 | 1193 | K(+) efflux antiporter 1, | no | no | 0.649 | 0.430 | 0.384 | 5e-84 | |
| A8AQP0 | 601 | Glutathione-regulated pot | yes | no | 0.668 | 0.880 | 0.336 | 5e-71 | |
| B1JIU4 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 | |
| Q664Q5 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 | |
| A4TGX5 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 | |
| Q1CCS7 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 | |
| A9R473 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 | |
| Q8ZJC4 | 602 | Glutathione-regulated pot | yes | no | 0.726 | 0.955 | 0.329 | 3e-69 |
| >sp|Q9M0Z3|KEA3_ARATH K(+) efflux antiporter 3, chloroplastic OS=Arabidopsis thaliana GN=KEA3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/760 (71%), Positives = 614/760 (80%), Gaps = 34/760 (4%)
Query: 1 MLESLACYHHSPKVYDIFGQTSSIRAYGHDSYGVLYLCKQKIHVQSHVENFKVYHRSFAF 60
ML S++C SPK Y++ Q S+R H ++ K + V S N + SF
Sbjct: 6 MLGSISCCP-SPKGYEMVKQ-HSVR-LKH----CVFTVKSSVPVYSEGVNDGIKLHSFG- 57
Query: 61 VNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWE---GFR--TYAAAEVAGAVDVINDLGL 115
+ +K+ L S Q RW G R TYA +VA AVDVINDLG
Sbjct: 58 --NLVKKKVF---------LDTSKRFYFQGRWSESSGRRVETYAGVDVASAVDVINDLGF 106
Query: 116 DTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFE 175
DTLTFL VTVI+VP F+I +ASPILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFE
Sbjct: 107 DTLTFLMVTVIIVPAFRILKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFE 166
Query: 176 MGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVN 235
MGLELSLARLKALAKFAFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSR DLVN
Sbjct: 167 MGLELSLARLKALAKFAFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRPDLVN 226
Query: 236 IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV 295
IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV
Sbjct: 227 IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV 286
Query: 296 LESQV--SESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLT 353
LESQ ES+WPML KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLT
Sbjct: 287 LESQDIGGESIWPMLAKESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLT 346
Query: 354 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDI 413
VAGTSL+TQ LGFSDTLGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+
Sbjct: 347 VAGTSLVTQWLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDM 406
Query: 414 ELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLA 473
E+LFREWPNVL+LL GLI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLA
Sbjct: 407 EVLFREWPNVLSLLGGLIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLA 466
Query: 474 NRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEP 533
NRLGVLP ELNKLLIIVVVLSMALTP LN++GR AADF+D++ +K+ E VN++ SE
Sbjct: 467 NRLGVLPNELNKLLIIVVVLSMALTPYLNQLGRKAADFLDERLDPGEKIGEDVNFDVSES 526
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
+VI+GFGQMGQVLAN LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD S
Sbjct: 527 IVIIGFGQMGQVLANFLSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGS 584
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
RP+VL SAG++SPKA+MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGA
Sbjct: 585 RPSVLQSAGVSSPKAIMIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGA 644
Query: 654 TDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMK 713
TDAILENAETSLQLGSKLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +K
Sbjct: 645 TDAILENAETSLQLGSKLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LK 702
Query: 714 PLQVRVADI----VEAEKTIPSTSNDDKLSREDNTDTAGE 749
P+Q++ +DI +K + + + N+D+A E
Sbjct: 703 PMQMKASDINVVSAATQKQVQLMKPMQMKASDSNSDSAAE 742
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65272|KEA2_ARATH K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 219/556 (39%), Positives = 321/556 (57%), Gaps = 51/556 (9%)
Query: 124 TVIVVPVF-KIARASPILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILFLLFEMGLEL 180
+VI VP+F KI SP+LG+ AGI++ G IIRN+ K ++E+G++FLLF +GLEL
Sbjct: 579 SVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLFNIGLEL 638
Query: 181 SLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSID 240
S+ RL ++ K+ FG+G QV+++ ++ + H V ++
Sbjct: 639 SVERLSSMKKYVFGLGSAQVLVTAA----------------VIGLITH----YVAGQAGP 678
Query: 241 EAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV 300
A+VIG L+LSS+A VLQ+L E+GE +R G AT +LL QD+AVV LL+++P++
Sbjct: 679 AAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNS 738
Query: 301 S------ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTV 354
S +++ L ++KA + + GG+ LLR +++ +AE R++E F A LL +
Sbjct: 739 SKGGIGFQAIAEALGLAAIKAAVAITGIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVI 798
Query: 355 AGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIE 414
GTSLLT + G S LGAFLAG +LAET F Q+E+DI P+RGLLLGLFF+T G SID +
Sbjct: 799 LGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPK 858
Query: 415 LLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLAN 474
LL +P ++ L L++ KT+++ IG G+++ +VR+GLLL+ GGEFAFV F A
Sbjct: 859 LLLANFPLIMGTLGLLLVGKTILVVIIGKLFGISIISAVRVGLLLAPGGEFAFVAFGEAV 918
Query: 475 RLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED-----KVE-EMVNY 528
G++ +L+ LL +VV +SMALTP L G+ I +F +D VE E +
Sbjct: 919 NQGIMTPQLSSLLFLVVGISMALTPWLAAGGQ----LIASRFELQDVRSLLPVESETDDL 974
Query: 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL 588
+G ++I GFG++GQ++A LLS L PFVA D++ V R L P+
Sbjct: 975 QGH--IIICGFGRIGQIIAQLLSERL----------IPFVALDVSSDRVAIGRSLDLPVY 1022
Query: 589 YGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648
+GDA VL G A I V L FP + + RA D+ H L+L
Sbjct: 1023 FGDAGSREVLHKIGADRACAAAIALDTPGANYRCVWALSKYFPNVKTFVRAHDVDHGLNL 1082
Query: 649 KKAGATDAILENAETS 664
+KAGAT + E E S
Sbjct: 1083 EKAGATAVVPETLEPS 1098
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZTZ7|KEA1_ARATH K(+) efflux antiporter 1, chloroplastic OS=Arabidopsis thaliana GN=KEA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 217/565 (38%), Positives = 325/565 (57%), Gaps = 51/565 (9%)
Query: 115 LDTLTFLAVTVIVVPVF-KIARASPILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILF 171
D L L +VI VP+F KI SP+LG+ AGI++ G IIRN+ + ++E+G++F
Sbjct: 590 FDFLWLLLASVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTRAIAEFGVVF 649
Query: 172 LLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231
LLF +GLELS+ RL ++ K+ FG+G QV+++ ++ L H
Sbjct: 650 LLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAA----------------VVGLLAH--- 690
Query: 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLV 291
V ++ A+VIG L+LSS+A VLQ+L E+GE +R G A+ +LL QD+AVV LL+
Sbjct: 691 -YVAGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRASFSVLLFQDLAVVVLLI 749
Query: 292 ILPVLESQVS------ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEA 345
++P++ S +++ L ++KA + + GG+ LLR +++ +AE R++E
Sbjct: 750 LIPLISPNSSKGGIGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENRNAEI 809
Query: 346 FVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFV 405
F A LL + GTSLLT + G S LGAFLAG +LAET F Q+E+DI P+RGLLLGLFF+
Sbjct: 810 FSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFM 869
Query: 406 TTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEF 465
T G SID +LL +P ++ L LI+ KT+++ +G G+++ ++R+GLLL+ GGEF
Sbjct: 870 TVGMSIDPKLLLSNFPVIVGTLGLLIVGKTMLVVIMGKLFGISIISAIRVGLLLAPGGEF 929
Query: 466 AFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED----- 520
AFV F A G++ +L+ LL +VV +SMA+TP L G+ I +F D
Sbjct: 930 AFVAFGEAVNQGIMSPQLSSLLFLVVGISMAITPWLAAGGQ----LIASRFELHDVRSLL 985
Query: 521 KVE-EMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579
VE E + +G ++I GFG++GQ++A LLS L PFVA D++ V
Sbjct: 986 PVESETDDLQGH--IIICGFGRVGQIIAQLLSERL----------IPFVALDVSSDRVTI 1033
Query: 580 SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639
R L P+ +GDA VL G A ++ V L +P + + RA
Sbjct: 1034 GRSLDLPVYFGDAGSKEVLHKIGAGRACAAVVALDAPGANYRCVWALSKFYPNVKTFVRA 1093
Query: 640 QDMMHLLDLKKAGATDAILENAETS 664
D++H L+L+KAGAT + E E S
Sbjct: 1094 HDVVHGLNLEKAGATAVVPETLEPS 1118
|
May operate as a K(+)/H(+) antiporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|A8AQP0|KEFB_CITK8 Glutathione-regulated potassium-efflux system protein KefB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 192/571 (33%), Positives = 309/571 (54%), Gaps = 42/571 (7%)
Query: 111 NDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWG 168
+DL + FL V VP+ +LG+ AGI + LG I ++ ++ SE G
Sbjct: 4 SDLLTAGVMFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELG 63
Query: 169 ILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFH 228
++FL+F +GLEL+ ++L L + FG+G QV+LS + + + +F
Sbjct: 64 VVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVMLSAVVLAGLLM---------LTDF--- 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
S AV+ G L++SS+A LQL+ EKG + G +LL QD+AV+P
Sbjct: 112 ---------SWQAAVIGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIP 162
Query: 289 LLVILPVLESQVSESV-WPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L E W +K +K LA G+L +GG+YLLR VF +A++ E F
Sbjct: 163 ALALVPLLAGSADEHFDW---IKVGMKVLAFAGML-IGGRYLLRPVFRFIADSGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ +R ++E I PF+GLLLGLFF++
Sbjct: 219 AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G S+++ +L+ V + L+ +KTL++ + G+ E ++ +LSQGGEFAF
Sbjct: 279 GMSLNLGVLYTHLLWVAVSVIVLVAVKTLVLYLLARLYGIRSSERMQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE-IGRWAADFIDDKFGSEDKVEEMV 526
V+FS A+ + + LL++ V LSM TPLL + + +W + ++ G E++ E+
Sbjct: 339 VLFSTASSQRLFQGDQMSLLLVTVTLSMMTTPLLMKLVDKWLSRQLN---GPEEEDEKPW 395
Query: 527 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
+ V++VGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VDDDKPQVIVVGFGRFGQVIGRLLMA--------NKM--RITVLERDISAVNLMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA++ +L SAG + ++++I + + T++ V+ R FP + I ARA+ +
Sbjct: 446 VYYGDATQVELLRSAGAEAAESIVITCNEPEDTMKLVEICRQHFPHLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGV 677
+L +AG T E ++L+LG K L G+
Sbjct: 506 ELLQAGVTQFSRETFSSALELGRKTLVSLGM 536
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338) |
| >sp|B1JIU4|KEFB_YERPY Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800) |
| >sp|Q664Q5|KEFB_YERPS Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pseudotuberculosis (taxid: 633) |
| >sp|A4TGX5|KEFB_YERPP Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pestis (strain Pestoides F) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pestis (strain Pestoides F) (taxid: 386656) |
| >sp|Q1CCS7|KEFB_YERPN Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628) |
| >sp|A9R473|KEFB_YERPG Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pestis bv. Antiqua (strain Angola) GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746) |
| >sp|Q8ZJC4|KEFB_YERPE Glutathione-regulated potassium-efflux system protein KefB OS=Yersinia pestis GN=kefB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 208/631 (32%), Positives = 323/631 (51%), Gaps = 56/631 (8%)
Query: 117 TLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLF 174
L FL V+ VP+ + +LG+ AGI + LG IR++ ++ SE G++FL+F
Sbjct: 10 VLVFLFAAVVAVPIAQRLGIGAVLGYLIAGIAIGPWGLGFIRDVDEILHFSELGVVFLMF 69
Query: 175 EMGLELSLARLKALAKFAFGMGLTQVVLST------LAFTAFELPPNGAVGTRILEFLFH 228
+GLEL+ A+L L + FG+G QVV++ L FT F
Sbjct: 70 IIGLELNPAKLWQLRRSIFGVGAGQVVITAAVLGALLYFTQF------------------ 111
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
+ AV+ G L++SS+A LQL+ EKG G +LL QD+AV+P
Sbjct: 112 ---------AWQAAVIGGVGLAMSSTAMALQLMREKGMNRNEGGQLGFSVLLFQDMAVIP 162
Query: 289 LLVILPVLE-SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L ++ + W VK LK A G+L +GG+YLLR +F + + E F
Sbjct: 163 ALALIPILAGNEGGANDW---VKIGLKIAAFAGML-IGGRYLLRPLFRYIVASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ F+ ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLVVLGSALFMDALGLSMALGTFIAGILLAESEFQHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++D+ +LF +VL + L+ IK+ I+ + GL ++ +LSQGGEFAF
Sbjct: 279 GMALDLGVLFTHLLDVLLGVLALVFIKSAILYGLARVFGLRRSVRLQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+FS A VL E LL++VV LSM TPLL ++ + ++ ++++ +E
Sbjct: 339 VLFSAAFSQRVLNAEQLALLLVVVTLSMMTTPLLMQV---IDRILVRRYNAQEESDEKPF 395
Query: 528 YEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP 586
E ++P V+IVGFG+ GQV+ LL A N + + + S V RK G+
Sbjct: 396 VEDNDPQVIIVGFGRFGQVIGRLLMA--------NKM--RITVLERDVSAVSMMRKYGYK 445
Query: 587 ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646
+ YGDA+ +L +AG KA++I + + T+ V + FP + I ARA+ +
Sbjct: 446 VYYGDATELELLRAAGAEKAKAIVITCNEPEDTMALVHLCQQHFPNLHILARARGRVEAH 505
Query: 647 DLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK-- 704
+L + G D E ++L+LG K L G+ +Q R +E++ Q
Sbjct: 506 ELLQNGVKDFTRETFSSALELGRKTLLELGMHPHQAYRAQQHFRRLDMRMLRELMPQHHG 565
Query: 705 DDQEFDIMKPLQVRVADIVEAEKTIPSTSND 735
D + +K + + DI + E S D
Sbjct: 566 DVAQISRIKEARRELEDIFQREMLHESRQLD 596
|
Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport. Yersinia pestis (taxid: 632) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 791 | ||||||
| 255554533 | 760 | Glutathione-regulated potassium-efflux s | 0.926 | 0.964 | 0.766 | 0.0 | |
| 449511271 | 879 | PREDICTED: K(+) efflux antiporter 3, chl | 0.978 | 0.880 | 0.703 | 0.0 | |
| 449438594 | 869 | PREDICTED: K(+) efflux antiporter 3, chl | 0.962 | 0.875 | 0.709 | 0.0 | |
| 307136449 | 788 | glutathione-regulated potassium-efflux s | 0.954 | 0.958 | 0.706 | 0.0 | |
| 356521253 | 807 | PREDICTED: K(+) efflux antiporter 3, chl | 0.982 | 0.962 | 0.702 | 0.0 | |
| 356524770 | 806 | PREDICTED: K(+) efflux antiporter 3, chl | 0.927 | 0.910 | 0.740 | 0.0 | |
| 297809661 | 756 | predicted protein [Arabidopsis lyrata su | 0.830 | 0.869 | 0.779 | 0.0 | |
| 334186362 | 776 | K+ efflux antiporter 3 [Arabidopsis thal | 0.917 | 0.935 | 0.711 | 0.0 | |
| 115489604 | 791 | Os12g0617800 [Oryza sativa Japonica Grou | 0.849 | 0.849 | 0.731 | 0.0 | |
| 7267243 | 756 | putative potassium transporter [Arabidop | 0.830 | 0.869 | 0.773 | 0.0 |
| >gi|255554533|ref|XP_002518305.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] gi|223542525|gb|EEF44065.1| Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/758 (76%), Positives = 640/758 (84%), Gaps = 25/758 (3%)
Query: 42 IHVQSHVENFKVYHRSFAFVNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAA 101
+HV S + + H SF FEGR LL+ S+ G S S + + R +A+
Sbjct: 1 MHVPSRALSCGIIHCSFLSGKIFEGRPLLSSSVLGGEGFSLSKHRLRHLKRS--RIHASV 58
Query: 102 EVAGAVDVINDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDV 161
+VA AVD INDLG+DTLTFLAVTV+VVPVFKI RASPILGFFFAG+VLNQ G+IRNLTDV
Sbjct: 59 DVASAVDAINDLGMDTLTFLAVTVVVVPVFKILRASPILGFFFAGVVLNQFGLIRNLTDV 118
Query: 162 KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTR 221
KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQV+LSTLAFTAFELPPNGA+GTR
Sbjct: 119 KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVILSTLAFTAFELPPNGAIGTR 178
Query: 222 ILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL 281
ILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL
Sbjct: 179 ILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL 238
Query: 282 QDIAVVPLLVILPVLESQ--VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAE 339
QDIAVVPLLVILPVLESQ + ES+WPML KESLKAL GLGLLSLGGKY+LRRVFEVVAE
Sbjct: 239 QDIAVVPLLVILPVLESQNLIEESIWPMLAKESLKALGGLGLLSLGGKYILRRVFEVVAE 298
Query: 340 ARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLL 399
RSSEAF+ALCLLTV GTSL TQ LGFSDTLGAFLAGA+LAETNFRTQIEADIRPFRGLL
Sbjct: 299 TRSSEAFIALCLLTVTGTSLSTQMLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLL 358
Query: 400 LGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLL 459
LGLFFVTTG+SID++LLFREWPNVL+LLAGLI+IKTLIISAIGPRVGLT++ESVRIG LL
Sbjct: 359 LGLFFVTTGTSIDMQLLFREWPNVLSLLAGLIVIKTLIISAIGPRVGLTIRESVRIGFLL 418
Query: 460 SQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSE 519
SQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE+GR AADFIDDKF E
Sbjct: 419 SQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEVGRRAADFIDDKFDKE 478
Query: 520 DKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579
DK E+VN++GSEPV+I+GFGQMGQVLAN LSAPLASG D + GWP+VAFDLNPSVVK
Sbjct: 479 DKAAELVNFDGSEPVIILGFGQMGQVLANFLSAPLASGIDADLAGWPYVAFDLNPSVVKA 538
Query: 580 SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639
SR+LGFP+LYGD SRPAVL +AGI+SPKA MIM+T KKRTIEAVQRLRLAFP IPIYARA
Sbjct: 539 SRRLGFPVLYGDGSRPAVLQTAGISSPKAFMIMHTGKKRTIEAVQRLRLAFPGIPIYARA 598
Query: 640 QDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699
QD++HLLDLKKAGATDAILENAETSLQLGS+LLKG GVMSDDV F+ QLVR+SME+QAQ+
Sbjct: 599 QDLVHLLDLKKAGATDAILENAETSLQLGSRLLKGLGVMSDDVDFVSQLVRDSMELQAQD 658
Query: 700 VLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTD-------------- 745
LS+ DD+ ++MKPLQVRV D V + P +S DKLSR + D
Sbjct: 659 ALSKTDDRGLNVMKPLQVRVVDSVATQVPPPPSSPQDKLSRREQMDDRTHILRSREETSH 718
Query: 746 -------TAGEDAKGVLYCELNGTNNFLDQTKGAGEMN 776
+ + KGV+YCELN N FL + A N
Sbjct: 719 MDDSGLQQSDDHDKGVIYCELNTENGFLGKADDATPEN 756
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511271|ref|XP_004163911.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/812 (70%), Positives = 652/812 (80%), Gaps = 38/812 (4%)
Query: 1 MLESLACYHHS-PKVYDIFGQTSSIRAYGHD-------SYGVLYLCKQKIHVQSHVENFK 52
MLE ++C S ++Y Q + RAY H S+ + Y +K+ V S N+
Sbjct: 79 MLEPVSCCQSSQSQIYGAVKQKNPFRAYSHTVHQLCGPSFNLHYSHSKKVAVPSCTSNYW 138
Query: 53 VYHRSFAFVNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAAEVAGAVDVIND 112
S V G L + G ++SN RP+ R E RT+AA +VA AVDVIND
Sbjct: 139 RNDYSLVPVLFHNGATTLTFKVVGQNGYNWSNR-RPKQR-ERIRTHAALDVAAAVDVIND 196
Query: 113 LGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFL 172
LGLDTLTFLAVTV+VVP+F+ +ASPILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFL
Sbjct: 197 LGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFL 256
Query: 173 LFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232
LFEMGLELS ARLKALA+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSD
Sbjct: 257 LFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSD 316
Query: 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVI 292
LVNIRS+DEA+VIGAALSLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVI
Sbjct: 317 LVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVI 376
Query: 293 LPVLESQV--SESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALC 350
LPVLESQ +ES+WPML +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALC
Sbjct: 377 LPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALC 436
Query: 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSS 410
LLTVAGTSL+TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+S
Sbjct: 437 LLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTS 496
Query: 411 IDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVF 470
ID++LLFREWPNVLALLAGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV
Sbjct: 497 IDMQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV- 555
Query: 471 SLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEG 530
LGVLPLELNKLLII+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++
Sbjct: 556 -----LGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDA 610
Query: 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG 590
+EPVVIVGFGQMGQVLAN LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYG
Sbjct: 611 TEPVVIVGFGQMGQVLANFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYG 670
Query: 591 DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650
D SRPAVL SAGI+SPKAVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK
Sbjct: 671 DGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKT 730
Query: 651 AGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFD 710
AGATDAILE+AETSLQLGSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ + + ++QE +
Sbjct: 731 AGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELE 790
Query: 711 IMKPLQVRVADIVEAEKTIPSTSN-DDKLS----REDNTDTAGE--------DAKGVLYC 757
IMKPLQ+RV D +E+ + S N DK +E + G D GVLYC
Sbjct: 791 IMKPLQIRVKDSIESPENELSRLNLKDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYC 850
Query: 758 ELNGTNNFLDQTKGAGEMNTVNPSMPLITTTE 789
+L+ NNFL++ N V P I T+
Sbjct: 851 DLDTENNFLEE-------NVVEPPTTHIAATD 875
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438594|ref|XP_004137073.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/798 (70%), Positives = 644/798 (80%), Gaps = 37/798 (4%)
Query: 14 VYDIFGQTSSIRAYGHD-------SYGVLYLCKQKIHVQSHVENFKVYHRSFAFVNSFEG 66
+Y Q + RAY H S+ + Y +K+ V S N+ S V G
Sbjct: 83 IYGAVKQKNPFRAYSHTVHQLCGPSFNLHYSHSKKVAVPSCTSNYWRNDYSLVPVLFHNG 142
Query: 67 RKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAAEVAGAVDVINDLGLDTLTFLAVTVI 126
L + G ++SN RP+ R E RT+AA +VA AVDVINDLGLDTLTFLAVTV+
Sbjct: 143 ATTLTFKVVGQNGYNWSNR-RPKQR-ERIRTHAALDVAAAVDVINDLGLDTLTFLAVTVV 200
Query: 127 VVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLK 186
VVP+F+ +ASPILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFLLFEMGLELS ARLK
Sbjct: 201 VVPLFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLK 260
Query: 187 ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 246
ALA+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSDLVNIRS+DEA+VIG
Sbjct: 261 ALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIG 320
Query: 247 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESV 304
AALSLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVILPVLESQ +ES+
Sbjct: 321 AALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESI 380
Query: 305 WPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 364
WPML +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALCLLTVAGTSL+TQKL
Sbjct: 381 WPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKL 440
Query: 365 GFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVL 424
GFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNVL
Sbjct: 441 GFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVL 500
Query: 425 ALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELN 484
ALLAGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV LGVLPLELN
Sbjct: 501 ALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV------LGVLPLELN 554
Query: 485 KLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQ 544
KLLII+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++ +EPVVIVGFGQMGQ
Sbjct: 555 KLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQ 614
Query: 545 VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604
VLAN LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYGD SRPAVL SAGI+
Sbjct: 615 VLANFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGIS 674
Query: 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETS 664
SPKAVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK AGATDAILE+AETS
Sbjct: 675 SPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETS 734
Query: 665 LQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVE 724
LQLGSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ + + ++QE +IMKPLQ+RV D +E
Sbjct: 735 LQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELEIMKPLQIRVKDSIE 794
Query: 725 AEKTIPSTSN-DDKLS----REDNTDTAGE--------DAKGVLYCELNGTNNFLDQTKG 771
+ + S N DK +E + G D GVLYC+L+ NNFL++
Sbjct: 795 SPENELSRLNLKDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYCDLDTENNFLEE--- 851
Query: 772 AGEMNTVNPSMPLITTTE 789
N V P I T+
Sbjct: 852 ----NVVEPPTTHIAATD 865
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136449|gb|ADN34254.1| glutathione-regulated potassium-efflux system protein kefb [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/802 (70%), Positives = 642/802 (80%), Gaps = 47/802 (5%)
Query: 13 KVYDIFGQTSSIRAYGHD-------SYGVLYLCKQKIHVQSHVENFKVYHRSFAFVNSFE 65
++Y Q + RAY H S+ + Y +K+ V S N S V
Sbjct: 2 QIYSAVKQKNPFRAYSHTVHQLCGPSFNLHYSHSKKVAVPSCTFNHWRNDYSLVPVLFHN 61
Query: 66 GRKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAAEVAGAVDVINDLGLDTLTFLAVTV 125
G L + G ++SN RP+ R E RT AA +VA AVDVINDLGLDTLTFLAVTV
Sbjct: 62 GATTLTFKVVGQNGYNWSNR-RPKQR-ERLRTRAALDVAAAVDVINDLGLDTLTFLAVTV 119
Query: 126 IVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARL 185
+VVP+F+ +ASPILGFFFAGIVLNQ G+IRN+ DVKVLSEWGILFLLFEMGLELS ARL
Sbjct: 120 VVVPLFRKVKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARL 179
Query: 186 KALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVI 245
KALA+FAFGMGLTQV+LST+AFTAFELP NGAVGT+ILEFLFH+RSDLVNIRS+DEA+VI
Sbjct: 180 KALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVI 239
Query: 246 GAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SES 303
GAALSLSSSAFVLQLLAEKGEL TRFGSATLGILLLQDIAVVPLLVILPVLESQ +ES
Sbjct: 240 GAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTES 299
Query: 304 VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQK 363
+WPML +ESLKAL GLGLLSLGGK +LRRVFEVVAEARSSEAFVALCLLTVAGTSL+TQK
Sbjct: 300 IWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQK 359
Query: 364 LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNV 423
LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID++LLFREWPNV
Sbjct: 360 LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNV 419
Query: 424 LALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLEL 483
LALLAGLI IKTLII+AIGPRVGLT QESVRIG LLSQGGEF FVV LGVLPLEL
Sbjct: 420 LALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVV------LGVLPLEL 473
Query: 484 NKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMG 543
NKLLII+VVLSMALTPLLNE GR A++FI +K+ +EDK + VN++ +EPVVIVGFGQMG
Sbjct: 474 NKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMG 533
Query: 544 QVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 603
QVLAN LS PLASG DGNT GWP+VAFD++ SVVK SRKLGFP+LYGD SRPAVL SAGI
Sbjct: 534 QVLANFLSTPLASGIDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGI 593
Query: 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAET 663
+SPKAVM+M+T+KK TI+AVQ+LRLAFPAIPIYARA+D++HLLDLK AGATDAILE+AET
Sbjct: 594 SSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAET 653
Query: 664 SLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIV 723
SLQLGSKLLKG GVMSD V+FL Q+VRNSMEIQAQ+ L + ++QE +IMKPLQ+RV D +
Sbjct: 654 SLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSI 713
Query: 724 EAEKTIPSTSNDDKLSREDNT--------DTAGE----------DAKGVLYCELNGTNNF 765
E+ + S +L+RED T D + D GVLYCEL+ NN
Sbjct: 714 ESPE-----SELSRLNREDKTQILNGKEVDQMKQGTVFQKPEDLDGNGVLYCELDTENNL 768
Query: 766 LDQTKGAGEMNTVNPSMPLITT 787
+Q N V P + T
Sbjct: 769 FEQ-------NVVEPPTHITAT 783
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521253|ref|XP_003529271.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/814 (70%), Positives = 649/814 (79%), Gaps = 37/814 (4%)
Query: 1 MLESLACYHHSPKVYDIFGQTSSIRAYGH-------DSYGVLYLCKQKIHVQSHVENFKV 53
MLESLA + S K YD+ Q S Y H +S +LY +++ + H + +
Sbjct: 6 MLESLA-WCQSFKGYDLTKQKSP--GYSHAISRVYRNSIFMLYSVNKQVPLLPHGASHGI 62
Query: 54 YHRSFAFVNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAAEVAGAVDVINDL 113
+HR+ N + L PS W+ L RP RWE +T A +VAGAV+VINDL
Sbjct: 63 FHRTCVSENFLKRSPLNVPS---WKGLY-----RP--RWEWLQTNVAYDVAGAVEVINDL 112
Query: 114 GLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLL 173
GLDTLTFLAVTV++VP FK +ASPILGFF AG+VLNQ G+IRNLTDVKVLSEWGILFLL
Sbjct: 113 GLDTLTFLAVTVLIVPTFKSLKASPILGFFCAGVVLNQFGLIRNLTDVKVLSEWGILFLL 172
Query: 174 FEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 233
FEMGLELSLARLKALAK+AFGMGL QVVLSTLAFTAFELPPNGAVGT+ILEFLFHSR DL
Sbjct: 173 FEMGLELSLARLKALAKYAFGMGLAQVVLSTLAFTAFELPPNGAVGTKILEFLFHSRPDL 232
Query: 234 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293
VNIRS+DEAVVIGAALSLSSSAFVLQLLAE+GELPTRFGSATLGILLLQD+AVVPLLVIL
Sbjct: 233 VNIRSVDEAVVIGAALSLSSSAFVLQLLAERGELPTRFGSATLGILLLQDLAVVPLLVIL 292
Query: 294 PVLESQ-VSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCL 351
P+LESQ ++E S+WPML +ESLKAL GLGLLSLG KY+LRRVFEVVA+ RSSEAFVALCL
Sbjct: 293 PILESQNITEGSIWPMLAQESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCL 352
Query: 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSI 411
LTVAGTSL+TQ LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFF+TTG+SI
Sbjct: 353 LTVAGTSLVTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSI 412
Query: 412 DIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFS 471
D++LL REWPNVL+LL GLI+IKTLII+AIGPRVGLTL+ESVRIGLLLSQGGEF FVVFS
Sbjct: 413 DMQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLKESVRIGLLLSQGGEFGFVVFS 472
Query: 472 LANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDK--VEEMVNYE 529
LANRLGVLPLELNKLLIIVVVLSMALTP LNE GR AA FI+DKF +E+K E VN+
Sbjct: 473 LANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEDKFDAENKQNASETVNFN 532
Query: 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY 589
SEPVVI+GFGQMGQVLAN LS PLASG D + VGWP+VAFDL+PSVVK +RK+GFP+LY
Sbjct: 533 VSEPVVILGFGQMGQVLANFLSNPLASGGDSDEVGWPYVAFDLDPSVVKAARKIGFPVLY 592
Query: 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649
GD SRP VL SAG++ PKA MIMYT KK+TIEAVQRLRL FPAIPIYARA+D+ HLLDLK
Sbjct: 593 GDGSRPDVLHSAGVSIPKAFMIMYTGKKKTIEAVQRLRLNFPAIPIYARARDLKHLLDLK 652
Query: 650 KAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEF 709
KAGATDAILENAETSL LGSKLLKG GVMSDDV FL QL+R+SME+QAQE + Q +D+
Sbjct: 653 KAGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMELQAQEGIGQSEDRGL 712
Query: 710 DIMKPLQVRVADIVEAEKTIPSTSNDDKLSR------------EDNTDTAGEDAKGVLYC 757
DIMKPLQV+VAD+ EA +TS + +LS + D+ +D +
Sbjct: 713 DIMKPLQVKVADVREAHVLTATTSPETELSEMNQKHQASSIRNQREVDSEEQDYELNEAV 772
Query: 758 ELNGTNNFLDQTKGAGEMNTVNPSMPLI-TTTEE 790
L G + + V+PS P T TEE
Sbjct: 773 NLEGNGVLVSKQSSEESSMVVDPSNPSSHTATEE 806
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524770|ref|XP_003531001.1| PREDICTED: K(+) efflux antiporter 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/758 (74%), Positives = 632/758 (83%), Gaps = 24/758 (3%)
Query: 1 MLESLACYHHSPKVYDIFGQTSSIRAYGH-------DSYGVLYLCKQKIHVQSHVENFKV 53
MLESLA + S K YD+ Q S Y H +S +LY K+++ + H + +
Sbjct: 6 MLESLA-WCQSFKGYDLTKQKSP--GYSHAISRVYRNSIFMLYSVKKQVPLLPHGASHGI 62
Query: 54 YHRSFAFVNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWEGFRTYAAAEVAGAVDVINDL 113
+HR+ F+ L PS WR L ++RWE +T A +VAGAV+VI+DL
Sbjct: 63 FHRTCVSEKFFKRSPLNVPS---WRGLC-------KSRWERLQTNVAYDVAGAVEVIHDL 112
Query: 114 GLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLL 173
GLDTLTFLAVTV++VP FK +ASPILGFF AG+VLNQ G+IRNLTDVK LSEWGILFLL
Sbjct: 113 GLDTLTFLAVTVLIVPTFKSIKASPILGFFCAGVVLNQFGLIRNLTDVKALSEWGILFLL 172
Query: 174 FEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 233
FEMGLELSLARLKALAK+AFGMGLTQVVLSTLAFTAFELPPNGAVGT+ILEFLFHSR DL
Sbjct: 173 FEMGLELSLARLKALAKYAFGMGLTQVVLSTLAFTAFELPPNGAVGTKILEFLFHSRPDL 232
Query: 234 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293
VNIRS+DEAVVIGAALSLSSSAFVLQLLAE+GELPTRFGSATLGILLLQD+AVVPLLVIL
Sbjct: 233 VNIRSVDEAVVIGAALSLSSSAFVLQLLAERGELPTRFGSATLGILLLQDLAVVPLLVIL 292
Query: 294 PVLESQ-VSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCL 351
P+LESQ ++E S+WPML +ESLKAL GLGLLSLG KY+LRRVFEVVA+ RSSEAFVALCL
Sbjct: 293 PILESQNITEGSIWPMLAQESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCL 352
Query: 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSI 411
LTVAGTSL+TQ LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFF+TTG+SI
Sbjct: 353 LTVAGTSLVTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSI 412
Query: 412 DIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFS 471
D++LL REWPNVL+LL GLI+IKTLII+AIGPRVGLTL+ESVRIGLLLSQGGEF FVVFS
Sbjct: 413 DMQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLKESVRIGLLLSQGGEFGFVVFS 472
Query: 472 LANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDK--VEEMVNYE 529
LANRLGVLPLELNKLLIIVVVLSMALTP LNE GR AA FI++ F E+K V E VN+
Sbjct: 473 LANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEENFDPENKQNVSETVNFN 532
Query: 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY 589
SEPVVI+GFGQMGQVLAN LS PLASG D + VGWP+VAFDL+PSVVK +RK+GFP+LY
Sbjct: 533 ISEPVVILGFGQMGQVLANFLSNPLASGGDSDEVGWPYVAFDLDPSVVKAARKIGFPVLY 592
Query: 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649
GD SRP VL SAG++SPKA MIMYT KK+TIEAVQRL+L FPAIPIYARA+D+ HLLDLK
Sbjct: 593 GDGSRPDVLHSAGVSSPKAFMIMYTGKKKTIEAVQRLKLNFPAIPIYARARDLKHLLDLK 652
Query: 650 KAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEF 709
KAGATDAILENAETSL LGSKLLKG GVMSDDV FL QL+R+SME+QAQE + Q DD+
Sbjct: 653 KAGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMELQAQEGIGQSDDRGL 712
Query: 710 DIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTA 747
DIMKPLQVRVA EA +TS + +LS + D A
Sbjct: 713 DIMKPLQVRVAVSREARVLAATTSPEAELSEMNQNDQA 750
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809661|ref|XP_002872714.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318551|gb|EFH48973.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/670 (77%), Positives = 584/670 (87%), Gaps = 13/670 (1%)
Query: 89 QTRWEGF-----RTYAAAEVAGAVDVINDLGLDTLTFLAVTVIVVPVFKIARASPILGFF 143
Q RW F +TYA +VA AVDVINDLG DTLTFL VTVI+VP F++ +ASPILGFF
Sbjct: 58 QGRWSEFSGRRVQTYAGVDVASAVDVINDLGFDTLTFLMVTVIIVPAFRVLKASPILGFF 117
Query: 144 FAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 203
FAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQV+L
Sbjct: 118 FAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVLLC 177
Query: 204 TLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE 263
T AFTAFELPPNGA+GT+ILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE
Sbjct: 178 TAAFTAFELPPNGAIGTKILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE 237
Query: 264 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPMLVKESLKALAGLGL 321
KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML KES KAL GLG+
Sbjct: 238 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQNLGGESIWPMLAKESAKALGGLGI 297
Query: 322 LSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAE 381
LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSDTLGAFLAGA+LAE
Sbjct: 298 LSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSDTLGAFLAGALLAE 357
Query: 382 TNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAI 441
TNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL GLI+IKTLII+AI
Sbjct: 358 TNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLGGLIVIKTLIITAI 417
Query: 442 GPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLL 501
GPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLIIVVVLSMALTP L
Sbjct: 418 GPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLIIVVVLSMALTPYL 477
Query: 502 NEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGN 561
N++GR AADF+D++ DK++E VN++ SE +VI+GFGQMGQVLAN LS PL S SD
Sbjct: 478 NQLGRKAADFLDERLDPGDKIDENVNFDVSESIVIIGFGQMGQVLANFLSTPLVSDSD-- 535
Query: 562 TVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIE 621
VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA+MIMY KKRT E
Sbjct: 536 LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKAIMIMYKGKKRTTE 595
Query: 622 AVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDD 681
AVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLGSKLL GFGVMSDD
Sbjct: 596 AVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLGSKLLTGFGVMSDD 655
Query: 682 VTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI-VEAEKTIPSTSNDDKLSR 740
V+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI VE+ ++
Sbjct: 656 VSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVESGAQQVQLMKPMQMKA 713
Query: 741 ED-NTDTAGE 749
D N+D+A E
Sbjct: 714 SDSNSDSAAE 723
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186362|ref|NP_001190675.1| K+ efflux antiporter 3 [Arabidopsis thaliana] gi|298351841|sp|Q9M0Z3.2|KEA3_ARATH RecName: Full=K(+) efflux antiporter 3, chloroplastic; Short=AtKEA3 gi|332657033|gb|AEE82433.1| K+ efflux antiporter 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/760 (71%), Positives = 614/760 (80%), Gaps = 34/760 (4%)
Query: 1 MLESLACYHHSPKVYDIFGQTSSIRAYGHDSYGVLYLCKQKIHVQSHVENFKVYHRSFAF 60
ML S++C SPK Y++ Q S+R H ++ K + V S N + SF
Sbjct: 6 MLGSISCCP-SPKGYEMVKQ-HSVR-LKH----CVFTVKSSVPVYSEGVNDGIKLHSFG- 57
Query: 61 VNSFEGRKLLAPSISGWRCLSFSNNNRPQTRWE---GFR--TYAAAEVAGAVDVINDLGL 115
+ +K+ L S Q RW G R TYA +VA AVDVINDLG
Sbjct: 58 --NLVKKKVF---------LDTSKRFYFQGRWSESSGRRVETYAGVDVASAVDVINDLGF 106
Query: 116 DTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFE 175
DTLTFL VTVI+VP F+I +ASPILGFFFAG+VLNQ G+IRNLTDVKVLSEWGILFLLFE
Sbjct: 107 DTLTFLMVTVIIVPAFRILKASPILGFFFAGVVLNQFGLIRNLTDVKVLSEWGILFLLFE 166
Query: 176 MGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVN 235
MGLELSLARLKALAKFAFGMGLTQV+L T AFTAFELPPNGA+GT+ILEFLFHSR DLVN
Sbjct: 167 MGLELSLARLKALAKFAFGMGLTQVLLCTAAFTAFELPPNGAIGTKILEFLFHSRPDLVN 226
Query: 236 IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV 295
IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV
Sbjct: 227 IRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPV 286
Query: 296 LESQV--SESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLT 353
LESQ ES+WPML KES KAL GLG+LSLGGK+ LRR+FEVVAE RSSEAFVALCLLT
Sbjct: 287 LESQDIGGESIWPMLAKESAKALGGLGILSLGGKFFLRRIFEVVAETRSSEAFVALCLLT 346
Query: 354 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDI 413
VAGTSL+TQ LGFSDTLGAFLAGA+LAETNFRTQIEADIRPFRGLLLGLFFVTTG+SID+
Sbjct: 347 VAGTSLVTQWLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDM 406
Query: 414 ELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLA 473
E+LFREWPNVL+LL GLI+IKTLII+AIGPRVGLT+QESVR+G LLSQGGEFAFVVFSLA
Sbjct: 407 EVLFREWPNVLSLLGGLIVIKTLIITAIGPRVGLTIQESVRVGFLLSQGGEFAFVVFSLA 466
Query: 474 NRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEP 533
NRLGVLP ELNKLLIIVVVLSMALTP LN++GR AADF+D++ +K+ E VN++ SE
Sbjct: 467 NRLGVLPNELNKLLIIVVVLSMALTPYLNQLGRKAADFLDERLDPGEKIGEDVNFDVSES 526
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
+VI+GFGQMGQVLAN LS PL S SD VGWP++ FDLNP+VVKESRKLGFPILYGD S
Sbjct: 527 IVIIGFGQMGQVLANFLSTPLVSDSD--LVGWPYIGFDLNPAVVKESRKLGFPILYGDGS 584
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
RP+VL SAG++SPKA+MIMY KKRT EAVQRLRLAFP PIYARAQD+ HLL+LKKAGA
Sbjct: 585 RPSVLQSAGVSSPKAIMIMYKGKKRTTEAVQRLRLAFPGSPIYARAQDLPHLLELKKAGA 644
Query: 654 TDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMK 713
TDAILENAETSLQLGSKLL GFGVMSDDV+FL ++ R+SMEIQAQE ++ + +K
Sbjct: 645 TDAILENAETSLQLGSKLLTGFGVMSDDVSFLSKVFRDSMEIQAQEEITASETNAG--LK 702
Query: 714 PLQVRVADI----VEAEKTIPSTSNDDKLSREDNTDTAGE 749
P+Q++ +DI +K + + + N+D+A E
Sbjct: 703 PMQMKASDINVVSAATQKQVQLMKPMQMKASDSNSDSAAE 742
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115489604|ref|NP_001067289.1| Os12g0617800 [Oryza sativa Japonica Group] gi|108862969|gb|ABA99872.2| Potassium transporter, putative, expressed [Oryza sativa Japonica Group] gi|113649796|dbj|BAF30308.1| Os12g0617800 [Oryza sativa Japonica Group] gi|215697125|dbj|BAG91119.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/705 (73%), Positives = 595/705 (84%), Gaps = 33/705 (4%)
Query: 102 EVAGAVDVINDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDV 161
++A AV+VINDLG DTLTFL VTV+VVP F++ +ASPILGFF AG+VLNQ G+IRNLTDV
Sbjct: 84 DIASAVEVINDLGFDTLTFLGVTVLVVPAFRVVKASPILGFFCAGVVLNQFGLIRNLTDV 143
Query: 162 KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTR 221
K+LSEWGILFLLFEMGLELSL+RLKALA++AFGMGL QV+LSTLAFTAFELPPNGA+GT+
Sbjct: 144 KLLSEWGILFLLFEMGLELSLSRLKALARYAFGMGLPQVLLSTLAFTAFELPPNGAIGTK 203
Query: 222 ILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL 281
IL+FLF SR DLVNIRS+DEA+VIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL
Sbjct: 204 ILQFLFDSRPDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLL 263
Query: 282 QDIAVVPLLVILPVLESQ--VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAE 339
QDIAVVPLLVILPVLESQ V +SVWPML+ ESLKAL GLGLLSLGGKYL+RR+FE VAE
Sbjct: 264 QDIAVVPLLVILPVLESQNVVEQSVWPMLLAESLKALGGLGLLSLGGKYLIRRIFEFVAE 323
Query: 340 ARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLL 399
+RSSEAFVALCLLTV+GTSLLTQ LGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLL
Sbjct: 324 SRSSEAFVALCLLTVSGTSLLTQWLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLL 383
Query: 400 LGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLL 459
LGLFFVTTG+SID+ELL REWPNVL+LL GLI IKTLII+AIGPRVGLTLQESVRIGLLL
Sbjct: 384 LGLFFVTTGTSIDMELLIREWPNVLSLLGGLIAIKTLIITAIGPRVGLTLQESVRIGLLL 443
Query: 460 SQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSE 519
SQGGEF FVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR AA ID+K ++
Sbjct: 444 SQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRRAAGIIDEKSETK 503
Query: 520 DKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579
+K EMVNY+ +EP+VI+GFG+MG+VLA LSAPL+ G D + GWP+VAFDLNP+VVK
Sbjct: 504 EKPAEMVNYDATEPIVILGFGEMGKVLAKFLSAPLSFGLDKDAEGWPYVAFDLNPAVVKS 563
Query: 580 SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639
+RK GFP+LYGD SRP VL SAG++SPKAVM+MYT K++TIEAV RLR AFP +P+YARA
Sbjct: 564 ARKSGFPVLYGDGSRPLVLQSAGVSSPKAVMVMYTGKEKTIEAVNRLRQAFPGVPMYARA 623
Query: 640 QDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699
QDM HLLDLKKAGAT+ +LENAETSLQLGS LL+G GVMSDDV+F +LVR+SME+QAQE
Sbjct: 624 QDMSHLLDLKKAGATEVVLENAETSLQLGSMLLRGLGVMSDDVSFFSKLVRDSMELQAQE 683
Query: 700 VLSQKDDQEFDIMKPLQVRVADIVEA-----------------------------EKTIP 730
L+ +++E DIMKPL++R++D+VE E IP
Sbjct: 684 ALNNIENREIDIMKPLEIRISDLVERNGNGSRMIAQEDSLRLSSRPNIPLIEATLEDRIP 743
Query: 731 STSNDDKLSREDNTDTAGEDAKGVLYCELNGTNNFLDQTKGAGEM 775
T+ ++ + D + ED GV YC L +++ + + + EM
Sbjct: 744 ETTGENDQTGYDFNNIDSED--GVKYCLLEASDDESEASNSSKEM 786
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7267243|emb|CAB80850.1| putative potassium transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/672 (77%), Positives = 581/672 (86%), Gaps = 15/672 (2%)
Query: 89 QTRWE---GFR--TYAAAEVAGAVDVINDLGLDTLTFLAVTVIVVPVFKIARASPILGFF 143
Q RW G R TYA +VA AVDVINDLG DTLTFL VTVI+VP F+I +ASPILGFF
Sbjct: 55 QGRWSESSGRRVETYAGVDVASAVDVINDLGFDTLTFLMVTVIIVPAFRILKASPILGFF 114
Query: 144 FAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 203
FAG+VLNQ G+IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQV+L
Sbjct: 115 FAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVLLC 174
Query: 204 TLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE 263
T AFTAFELPPNGA+GT+ILEFLFHSR DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE
Sbjct: 175 TAAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE 234
Query: 264 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQV--SESVWPMLVKESLKALAGLGL 321
KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQ ES+WPML KES KAL GLG+
Sbjct: 235 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQDIGGESIWPMLAKESAKALGGLGI 294
Query: 322 LSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAE 381
LSLGGK+ LRR+FEVVAE RSSEAFVALCLLTVAGTSL+TQ LGFSDTLGAFLAGA+LAE
Sbjct: 295 LSLGGKFFLRRIFEVVAETRSSEAFVALCLLTVAGTSLVTQWLGFSDTLGAFLAGALLAE 354
Query: 382 TNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAI 441
TNFRTQIEADIRPFRGLLLGLFFVTTG+SID+E+LFREWPNVL+LL GLI+IKTLII+AI
Sbjct: 355 TNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMEVLFREWPNVLSLLGGLIVIKTLIITAI 414
Query: 442 GPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLL 501
GPRVGLT+QESVR+G LLSQGGEFAFVVFSLANRLGVLP ELNKLLIIVVVLSMALTP L
Sbjct: 415 GPRVGLTIQESVRVGFLLSQGGEFAFVVFSLANRLGVLPNELNKLLIIVVVLSMALTPYL 474
Query: 502 NEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGN 561
N++GR AADF+D++ +K+ E VN++ SE +VI+GFGQMGQVLAN LS PL S SD
Sbjct: 475 NQLGRKAADFLDERLDPGEKIGEDVNFDVSESIVIIGFGQMGQVLANFLSTPLVSDSD-- 532
Query: 562 TVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIE 621
VGWP++ FDLNP+VVKESRKLGFPILYGD SRP+VL SAG++SPKA+MIMY KKRT E
Sbjct: 533 LVGWPYIGFDLNPAVVKESRKLGFPILYGDGSRPSVLQSAGVSSPKAIMIMYKGKKRTTE 592
Query: 622 AVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDD 681
AVQRLRLAFP PIYARAQD+ HLL+LKKAGATDAILENAETSLQLGSKLL GFGVMSDD
Sbjct: 593 AVQRLRLAFPGSPIYARAQDLPHLLELKKAGATDAILENAETSLQLGSKLLTGFGVMSDD 652
Query: 682 VTFLRQLVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADI----VEAEKTIPSTSNDDK 737
V+FL ++ R+SMEIQAQE ++ + +KP+Q++ +DI +K +
Sbjct: 653 VSFLSKVFRDSMEIQAQEEITASETNAG--LKPMQMKASDINVVSAATQKQVQLMKPMQM 710
Query: 738 LSREDNTDTAGE 749
+ + N+D+A E
Sbjct: 711 KASDSNSDSAAE 722
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 791 | ||||||
| TAIR|locus:2198215 | 1193 | KEA1 "K+ efflux antiporter 1" | 0.663 | 0.440 | 0.325 | 5.8e-60 | |
| TIGR_CMR|ECH_0146 | 568 | ECH_0146 "putative glutathione | 0.554 | 0.772 | 0.271 | 2.7e-57 | |
| TIGR_CMR|APH_1305 | 571 | APH_1305 "glutathione-regulate | 0.573 | 0.795 | 0.279 | 1.1e-56 | |
| TIGR_CMR|SO_1481 | 589 | SO_1481 "glutathione-regulated | 0.417 | 0.560 | 0.317 | 2.4e-52 | |
| TIGR_CMR|CPS_1593 | 655 | CPS_1593 "putative glutathione | 0.562 | 0.679 | 0.286 | 8e-51 | |
| TIGR_CMR|CPS_3340 | 610 | CPS_3340 "glutathione-regulate | 0.724 | 0.939 | 0.275 | 1.5e-49 | |
| TIGR_CMR|SO_1647 | 648 | SO_1647 "glutathione-regulated | 0.536 | 0.654 | 0.299 | 2.2e-45 | |
| UNIPROTKB|Q9KNX4 | 656 | VC_2606 "Glutathione-regulated | 0.479 | 0.577 | 0.291 | 1.6e-44 | |
| TIGR_CMR|VC_2606 | 656 | VC_2606 "glutathione-regulated | 0.479 | 0.577 | 0.291 | 1.6e-44 | |
| TIGR_CMR|SPO_1424 | 626 | SPO_1424 "glutathione-regulate | 0.443 | 0.560 | 0.276 | 3.9e-43 |
| TAIR|locus:2198215 KEA1 "K+ efflux antiporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.8e-60, P = 5.8e-60
Identities = 185/568 (32%), Positives = 269/568 (47%)
Query: 116 DTLTFLAVTVIVVPVF-KIARASPILGFFFAGIVLNQLG--IIRNLTDVKVLSEWGILFL 172
D L L +VI VP+F KI SP+LG+ AGI++ G IIRN+ + ++E+G++FL
Sbjct: 591 DFLWLLLASVIFVPLFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTRAIAEFGVVFL 650
Query: 173 LFEMGLEXXXXXXXXXXXXXXGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232
LF +GLE G+G QV++ TA VG L H
Sbjct: 651 LFNIGLELSVERLSSMKKYVFGLGSAQVLV-----TA------AVVG-----LLAH---- 690
Query: 233 LVNIRSIDEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXX 292
V ++ A+VIG E+GE +R G A+ +LL QD+A
Sbjct: 691 YVAGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRASFSVLLFQDLAVVVLLIL 750
Query: 293 XXXXESQVSES-VWPMLVKEXXXXXXXXXXXXXXXXXXXRR-----VFEVVAEARSSEAF 346
S+ + + E R +++ +AE R++E F
Sbjct: 751 IPLISPNSSKGGIGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENRNAEIF 810
Query: 347 VALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVT 406
A LL + GTSLLT + G S LGAFLAG +LAET F Q+E+DI P+R +T
Sbjct: 811 SANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMT 870
Query: 407 TGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFA 466
G SID +LL +P + G G+++ ++R+GLLL+ GGEFA
Sbjct: 871 VGMSIDPKLLLSNFPVIVGTLGLLIVGKTMLVVIMGKLFGISIISAIRVGLLLAPGGEFA 930
Query: 467 FVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFID-DKFGSEDKVE-E 524
FV F A G++ +L+ LL +VV +SMA+TP L G+ A + S VE E
Sbjct: 931 FVAFGEAVNQGIMSPQLSSLLFLVVGISMAITPWLAAGGQLIASRFELHDVRSLLPVESE 990
Query: 525 MVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG 584
+ +G ++I GFG++GQ++A LLS L PFVA D++ V R L
Sbjct: 991 TDDLQGH--IIICGFGRVGQIIAQLLSERLI----------PFVALDVSSDRVTIGRSLD 1038
Query: 585 FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644
P+ +GDA VL G A ++ V L +P + + RA D++H
Sbjct: 1039 LPVYFGDAGSKEVLHKIGAGRACAAVVALDAPGANYRCVWALSKFYPNVKTFVRAHDVVH 1098
Query: 645 LLDLKKAGATDAILENAETSLQLGSKLL 672
L+L+KAGAT + E E SLQL + +L
Sbjct: 1099 GLNLEKAGATAVVPETLEPSLQLAAAVL 1126
|
|
| TIGR_CMR|ECH_0146 ECH_0146 "putative glutathione-regulated potassium-efflux system protein KefB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 122/450 (27%), Positives = 208/450 (46%)
Query: 242 AVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQVS 301
+++IG EKG T+ G ++ +LLLQD A +
Sbjct: 116 SIIIGGALALSSTAIVLQVLQEKGYQSTQVGRLSIAVLLLQDFAVVPLIVLLPLLTGESH 175
Query: 302 ESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSLLT 361
S+ L+ R +F +A +S+E F+A LL V G + +T
Sbjct: 176 HSIPISLLYSFVKAAIALTLIFITGRLLLRPLFNTIAAMKSNEIFIATTLLIVLGAAFIT 235
Query: 362 QKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREWP 421
+ S LGAF++G ++AET +R +E + PF+ +T G SIDI+ + + P
Sbjct: 236 ENFNLSMALGAFVSGLLVAETEYRHDVEQVVLPFKRLLLGLFFMTVGMSIDIKFVLNKLP 295
Query: 422 NVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 481
+ L +++ GLLLSQGGEFAF++F LA VL
Sbjct: 296 IITLASISLIALKSFIIFILCRFFRFQLAAAIQAGLLLSQGGEFAFILFGLAAEKNVLSS 355
Query: 482 ELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEG-SEPVVIVGFG 540
+L + L+++ ++MA TPLL +G W + I K S + E +++ + + V++VGFG
Sbjct: 356 DLAQTLMMITTVTMAFTPLLATLGDWISKLITKKKISLNSQELILDTKDLDQHVIVVGFG 415
Query: 541 QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 600
++G+++A +L A + ++A D+ P +VK+ GFP+ GD ++ L S
Sbjct: 416 RVGRMVAKVLVAEHVN----------YIASDIQPKIVKDGIDEGFPVYLGDLTKLNTLQS 465
Query: 601 AGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 660
I+ + ++I ++ + + + FP I I R D+ ++ K+ GA I E
Sbjct: 466 MAISRARMIIIAINNEVTIKKIISLVAKNFPHIIIIVRLPDLSNVEIYKELGAHYLIPET 525
Query: 661 AETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690
E LQLG+ L G + ++ L+ R
Sbjct: 526 YEVGLQLGAVALSNNGFSNHAISLLKDRFR 555
|
|
| TIGR_CMR|APH_1305 APH_1305 "glutathione-regulated potassium-efflux system protein" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 131/468 (27%), Positives = 210/468 (44%)
Query: 240 DEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQ 299
+ +VVIG EKG ++ G ++ +LLLQD A +
Sbjct: 114 ESSVVIGGALALSSTAIVLQVLQEKGMQSSQVGRLSIAVLLLQDFAVVPLIVLLPLLAGE 173
Query: 300 VSESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSL 359
+ V + + R +F +A +S+E F+A LL V G +
Sbjct: 174 SNSLVGSLFIA-FLKAGVALALIFVTGRLLLRPLFGTIAAMKSNEVFIASTLLIVLGAAF 232
Query: 360 LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFRE 419
+T+ S LGAF++G ++AET +R +E + PF+ +T G SID ELL +
Sbjct: 233 VTENFNLSMALGAFVSGLLVAETEYRYDVEQVVLPFKKLLLGLFFMTVGMSIDTELLLSK 292
Query: 420 WPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVL 479
P V +L ++ GLLLSQGGEF+F++F LA VL
Sbjct: 293 LPVVAALSLSLMLLKSFIVCVLCRCFRFSLSAGLQAGLLLSQGGEFSFILFGLAAEKSVL 352
Query: 480 PLELNKLLIIVVVLSMALTPLLNEIGRWAADFID-DKFGSEDKVEEMVNYEGSEPVVIVG 538
+L ++L++ ++MA TPLL +G W + F+ +K + + + V++VG
Sbjct: 353 SHDLAQVLMMATTVTMAFTPLLATLGNWISGFLTKNKVSYTSSALVLDTSDLDQHVIVVG 412
Query: 539 FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598
FG++G+++A +L A + ++A D+ PSVV E RK GFP+ GD ++ VL
Sbjct: 413 FGRVGRLVAKVLMAEHVN----------YIASDIQPSVVTEGRKEGFPVYLGDLTKLEVL 462
Query: 599 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAIL 658
+ G + A+ I ++ + + + FP I R D+ + KK GA I
Sbjct: 463 TAMGASRATAIAIAINNEVTAKKVIALVAKNFPDTIIAVRIPDLSNADMYKKLGAHYLIP 522
Query: 659 ENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDD 706
E E LQLG L G + + L+ R ME + V + D
Sbjct: 523 ETYEAGLQLGGIALSISGFSDNAILSLQNAFR--MEDYQRPVKKESSD 568
|
|
| TIGR_CMR|SO_1481 SO_1481 "glutathione-regulated potassium-efflux system protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 110/346 (31%), Positives = 181/346 (52%)
Query: 332 RVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEAD 391
RV ++VA + E A LL V G++ L + LG S +GAFLAG +LA +++R Q+E D
Sbjct: 204 RVLKLVASSGVREVLTAFALLLVMGSAQLMEWLGLSAGMGAFLAGIMLANSSYRHQLETD 263
Query: 392 IRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQE 451
I PF+ + G S+D++L + + G T +
Sbjct: 264 IEPFKGLLLGLFFMAVGMSMDLKLFLTDPLLILAILLGMLLIKTLVLMLLGRVRHHTWRP 323
Query: 452 SVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADF 511
S+ +GL+L++GGEFAFV+ S A ++ ++ ++L++ + LSMA+TP++ + R
Sbjct: 324 SIALGLILAEGGEFAFVLLSQAQLSSIVDDKIAQILVLAIGLSMAVTPMIFTLFRATKPK 383
Query: 512 IDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD 571
+ D ++ + +N SE VVI GFG++GQ+ +L++ G PFVA D
Sbjct: 384 VVDT-----RLPDTINVTESE-VVIAGFGRVGQITGRILASS----------GIPFVALD 427
Query: 572 LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 631
+ S V R+ G + +GDA R +L+SAGI + +++ + +IE Q+++ FP
Sbjct: 428 KDASHVDVIRQYGGEVYFGDARRLDMLMSAGIARSRLLLLAVDSVEDSIEIAQQVKTHFP 487
Query: 632 AIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGV 677
I I ARA+D H L G TD E ++L K+L+G G+
Sbjct: 488 HINIIARARDRNHAYRLMSLGVTDVFRETFGSALSASEKILQGLGL 533
|
|
| TIGR_CMR|CPS_1593 CPS_1593 "putative glutathione-regulated potassium-efflux system protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 8.0e-51, Sum P(2) = 8.0e-51
Identities = 133/464 (28%), Positives = 222/464 (47%)
Query: 218 VGTRILEFLFHSRSDLVNIRSIDEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLG 277
VG +L F+ + L S EA V+G E G + + G ++
Sbjct: 92 VGISLLVFII---AGLFFGLSFSEAFVVGSILALSSTAIVIRQLSETGAMKRKSGQLSVA 148
Query: 278 ILLLQDIAXXXXXXXX--XXXESQVSESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFE 335
ILL QD+A +SQ S VW +++ +VF
Sbjct: 149 ILLFQDVAVVPLLIIIPMLAMDSQ-SSMVWALMLA-MVKGVVVVALLLLIGKWLLPKVFN 206
Query: 336 VVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF 395
++A+ R+ E FV LL + TQ G S LGAFLAG +L+E+ ++ Q+EADIRP+
Sbjct: 207 IIAQVRTDELFVLTTLLVTLLAAAFTQWFGLSMALGAFLAGMMLSESEYKHQLEADIRPY 266
Query: 396 RXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRI 455
R +T G +D+ LL ++ + G + +++
Sbjct: 267 RDILLGLFFITVGMKLDVSLLISSPFSLLGLMLCFMLVKIMVIKILAVKAGESSKDAWAS 326
Query: 456 GLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTP-LLNEIGRWAADFIDD 514
GL+L+Q GEF FV+ +LAN+ +LPL++ +L+ V+SMA+TP ++N WA +
Sbjct: 327 GLMLAQMGEFGFVLIALANQSQILPLDVASMLLGAGVISMAITPFMINNARSWALFLSQE 386
Query: 515 KFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 573
K + ++ + E VVI GFG++GQ ++ L FVA D++
Sbjct: 387 KSPESLDLSQLPENKVLENHVVICGFGRVGQTVSRFLKQDEID----------FVAIDVD 436
Query: 574 PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAI 633
P +++R+ G +L+G + + VL +A ++ K V+I + D K+++E +Q++R +
Sbjct: 437 PLRTQKAREAGEKVLFGSSRQTEVLNAAHLSEAKLVVIAFGDDKQSLEVIQKVRSMNEKV 496
Query: 634 PIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGV 677
PI R ++ L L+ AGA + + E+ E SL L S++L GV
Sbjct: 497 PILVRTRNDDQLDALQAAGANEVVPESLEGSLMLVSQVLSLTGV 540
|
|
| TIGR_CMR|CPS_3340 CPS_3340 "glutathione-regulated potassium-efflux system protein KefC" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 173/628 (27%), Positives = 274/628 (43%)
Query: 120 FLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMG 177
+LA +I VP+ K +LG+ AGI++ LG++ + TDV +E+G++ +LF +G
Sbjct: 8 YLAAAIIAVPIAKRVGLGSVLGYLLAGILIGPFLLGLVGDQTDVMHFAEFGVVMMLFLVG 67
Query: 178 LEXXXXXXXXXXXXXXGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIR 237
LE G+G QVV++TL +A A T IL + +
Sbjct: 68 LELQPSRLWKLRHSIIGLGGLQVVVTTLLISA-------ACYT-ILSLAWQT-------- 111
Query: 238 SIDEAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXX--XX 295
++ IG EKG + G +LL QDIA
Sbjct: 112 ----SLAIGLMLALSSTAIVLQTLNEKGWIKQEAGQNAFSVLLFQDIAVIPILALVPLLA 167
Query: 296 XESQVSESV--------WPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFV 347
+S+S +P+ + + +F +AE R E F
Sbjct: 168 FSDNISDSGSHGNLIEHFPVYI-QTAISVGVIAAIILAGKYVSAPLFRYIAETRLRELFT 226
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTT 407
L V +++ QK+G S LG FLAG +LAE+ FR ++E DI PF+ +T
Sbjct: 227 VFALFLVIVIAVIMQKIGLSPALGTFLAGVVLAESEFRHELEVDIEPFKGLLLGLFFITV 286
Query: 408 GSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAF 467
G+SID LLF E V + ++ + L L+QGGEFAF
Sbjct: 287 GASIDFPLLFEELGLVTLLVVSLIAIKAAVLFLLSILFKMEKKQKLLFTLALAQGGEFAF 346
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
V+ SL + L +L E +K+ +VV +SM + P+L D + DK E++
Sbjct: 347 VLLSLTSSLQILTPEQSKITTLVVAISMLMAPVLLIFYEKVLDKEAENAREFDKPEDI-- 404
Query: 528 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587
E ++ V+I G+G+ GQ++ LL GS G + D +P+ + +K G +
Sbjct: 405 -EATKSVIIAGYGRFGQIVGRLL------GSQG----YHLSILDHSPTQIDLLKKFGNKV 453
Query: 588 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 647
YGDA+R +L ++G + ++I D + IE Q + +P + I ARA D H +
Sbjct: 454 FYGDAARKDLLEASGAQEAQLLVIAIDDADKIIEIAQLAQKHYPNLQIVARAIDRHHAYE 513
Query: 648 LKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQK--D 705
L + G E E++L LG L+ G + QL + + ++ VLS+ D
Sbjct: 514 LIRIGVKTIKRETFESALGLGVSALELLGNSQESAKRAGQLF-SEHDRESMHVLSEVWGD 572
Query: 706 DQEFDI-----MKPL-QVRVADIVEAEK 727
D + + M+ L QV V+D E K
Sbjct: 573 DHSYGVAVKQRMELLKQVLVSDEEEQSK 600
|
|
| TIGR_CMR|SO_1647 SO_1647 "glutathione-regulated potassium-efflux system protein KefB, putative" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 2.2e-45, Sum P(2) = 2.2e-45
Identities = 132/441 (29%), Positives = 199/441 (45%)
Query: 241 EAVVIGXXXXXXXXXXXXXXXXEKGELPTRFGSATLGILLLQDIAXXXXXXXXXXXESQV 300
E++VIG E G L R G ++ +LL QD+A
Sbjct: 113 ESLVIGAAIALSSTAIVLKLLNELGWLRRRHGELSVSVLLFQDLAVVPLLILLPLLGQSD 172
Query: 301 SESVWPMLVKEXXXXXXXXXXXXXXXXXXXRRVFEVVAEARSSEAFVALCLLTVAGTSLL 360
V + R+F+ VA +RS+E FV L+ T
Sbjct: 173 EPLVLASIAWALLKGILAFFFLMALGKWALPRLFDEVARSRSNELFVLSTLVVALVTGAF 232
Query: 361 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRXXXXXXXXVTTGSSIDIELLFREW 420
TQ LG S LGAF+AG +L E+ +R Q+EADIRPFR ++ G ++ L+ + W
Sbjct: 233 TQWLGLSMALGAFMAGMLLGESQYRRQLEADIRPFRDLLMGLFFISIGMMLNFALVIQFW 292
Query: 421 PNVXXXXXXXXXXXXXXXXXXGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLP 480
+ VG + ++ L L+Q GEF+FVV +LA G+L
Sbjct: 293 WQILLILLAVVFGKALIIHGLLRLVGEPFRIAISTALSLAQVGEFSFVVLALAVSYGLLS 352
Query: 481 LELNKLLIIVVVLSMALTPLL----NEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVI 536
E + +L++V VLSM++ P L +I +W G D V ++ + + VVI
Sbjct: 353 NETSTMLVMVAVLSMSIAPWLVRHCMDIAKWLLGIRQS--GHVDDVVPVIT-DDHDLVVI 409
Query: 537 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA 596
+G+G++GQ +A L T P++ DL+P+ V E+R+ G PI +GD + A
Sbjct: 410 LGYGRVGQTIARFLK----------TEAVPYLVLDLDPTRVYEARRAGEPIYFGDVCKRA 459
Query: 597 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDA 656
+L GI K ++I + + + EA+ R P I R +D L L+KAGA
Sbjct: 460 ILKQIGIKHAKMIVITFCESRSVEEALPLCRQLAPEANILVRTRDDSELDLLQKAGANQV 519
Query: 657 ILENAETSLQLGSKLLKGFGV 677
I E E SL L S++L GV
Sbjct: 520 IPETLEGSLMLVSQVLHQCGV 540
|
|
| UNIPROTKB|Q9KNX4 VC_2606 "Glutathione-regulated potassium-efflux system protein KefB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 116/398 (29%), Positives = 189/398 (47%)
Query: 333 VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADI 392
+F +A + E F LL V G +LL QK+G S LG FLAG ILAE+ FR ++E I
Sbjct: 260 LFRYIALSGVRELFTVAALLLVVGIALLMQKVGLSMALGTFLAGVILAESEFRHELEIAI 319
Query: 393 RPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQES 452
PF+ ++ G ++D+ LL + + G +
Sbjct: 320 DPFKGLLLGLFFISVGMAVDVGLLLVKPLQIMLAVLGLVIVKGLVLYLLARLSGTVAKAR 379
Query: 453 VRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR-WAADF 511
++ +LSQGGEFAFV+F+ A+ G+L L++VV LSM TPLL + W A
Sbjct: 380 SKMAAILSQGGEFAFVIFTAASAEGLLTASQVSFLLVVVSLSMVTTPLLLSAQKYWFARQ 439
Query: 512 IDDKFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF 570
++ + E+ + V E EP V+IVGFG+ GQ++ LL A N + +
Sbjct: 440 LNIE---ENPLTPDV--ENKEPRVIIVGFGRFGQIVGRLLYA--------NKIKVTILES 486
Query: 571 DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630
D S V+ RK G+ + YGDA+ +L +AG+ +A+++ D ++ I V+ + F
Sbjct: 487 DA--SQVRLLRKYGYKVFYGDATNLELLRAAGVEQAEALVVCTDDPEQVITIVELCQQHF 544
Query: 631 PAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690
P + + ARA+ + L G + E ++L LG K L G+ +
Sbjct: 545 PNLKLLARARSRVEAYQLMSLGVQNYTRETFLSALDLGRKALVQLGMHPYQAKRAEEHFH 604
Query: 691 NSMEIQAQEVLSQ-KDDQEFDIM-KPLQVRVADIVEAE 726
+ +E+L Q +D++ ++ K + + +I E
Sbjct: 605 RLDKTMLKELLPQHNEDKQLELRAKEARTELEEIFSRE 642
|
|
| TIGR_CMR|VC_2606 VC_2606 "glutathione-regulated potassium-efflux system protein KefB" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 116/398 (29%), Positives = 189/398 (47%)
Query: 333 VFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADI 392
+F +A + E F LL V G +LL QK+G S LG FLAG ILAE+ FR ++E I
Sbjct: 260 LFRYIALSGVRELFTVAALLLVVGIALLMQKVGLSMALGTFLAGVILAESEFRHELEIAI 319
Query: 393 RPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQES 452
PF+ ++ G ++D+ LL + + G +
Sbjct: 320 DPFKGLLLGLFFISVGMAVDVGLLLVKPLQIMLAVLGLVIVKGLVLYLLARLSGTVAKAR 379
Query: 453 VRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR-WAADF 511
++ +LSQGGEFAFV+F+ A+ G+L L++VV LSM TPLL + W A
Sbjct: 380 SKMAAILSQGGEFAFVIFTAASAEGLLTASQVSFLLVVVSLSMVTTPLLLSAQKYWFARQ 439
Query: 512 IDDKFGSEDKVEEMVNYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF 570
++ + E+ + V E EP V+IVGFG+ GQ++ LL A N + +
Sbjct: 440 LNIE---ENPLTPDV--ENKEPRVIIVGFGRFGQIVGRLLYA--------NKIKVTILES 486
Query: 571 DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630
D S V+ RK G+ + YGDA+ +L +AG+ +A+++ D ++ I V+ + F
Sbjct: 487 DA--SQVRLLRKYGYKVFYGDATNLELLRAAGVEQAEALVVCTDDPEQVITIVELCQQHF 544
Query: 631 PAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690
P + + ARA+ + L G + E ++L LG K L G+ +
Sbjct: 545 PNLKLLARARSRVEAYQLMSLGVQNYTRETFLSALDLGRKALVQLGMHPYQAKRAEEHFH 604
Query: 691 NSMEIQAQEVLSQ-KDDQEFDIM-KPLQVRVADIVEAE 726
+ +E+L Q +D++ ++ K + + +I E
Sbjct: 605 RLDKTMLKELLPQHNEDKQLELRAKEARTELEEIFSRE 642
|
|
| TIGR_CMR|SPO_1424 SPO_1424 "glutathione-regulated potassium-efflux system protein KefC" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 103/373 (27%), Positives = 182/373 (48%)
Query: 331 RRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEA 390
R +F + +R E + AL L+ V G S L +G S LGAFLAG +LA + FR ++E+
Sbjct: 227 RPLFRFIHASRLREMYTALALMIVVGISFLMTLVGLSPALGAFLAGVVLANSEFRHEMES 286
Query: 391 DIRPFRXXXXXXXXVTTGSSIDIELLFREWPNVXXXXXXXXXXXXXXXXXXGPRVGLTLQ 450
D+ PF+ +T G+ ID+ + ++ G L +
Sbjct: 287 DLEPFKGLLLGLFFITVGAGIDVGFFLADPLDLIGLALLVILFKGVILYIVGRAFQLKGR 346
Query: 451 ESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAAD 510
+ L L+Q GEF FV+ + + + V+P L++ L++++ L+M +TPLL + +
Sbjct: 347 DRWLFTLGLAQAGEFGFVLLAFSTQQNVIPAHLSQKLLMIIALTMMITPLLFILYELLSR 406
Query: 511 FIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF 570
+ D D V + ++ +G PV+I G G+ GQ++ L++A G+ +
Sbjct: 407 RMRDHVA--DMVPDTIDEQG--PVIIAGIGRFGQIVNRLVTAS----------GFKTIVL 452
Query: 571 DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630
D + ++ R+ G GD +RP +L +AG+ + ++ D + + V R
Sbjct: 453 DHDMETIQLMRRFGVKGFLGDPTRPELLKAAGLAKAQVLVAALDDDNQVTKLVAYARRQR 512
Query: 631 PAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDV-----TFL 685
P + I ARA+D H+ +L +AGA D + E ++S++ G +L+ G+ + TF
Sbjct: 513 PDLHIIARARDRNHVYELYRAGANDIVREMFDSSVRAGRYVLENVGLSEYEAAQAAQTFY 572
Query: 686 ---RQLVRNSMEI 695
RQ VR+ E+
Sbjct: 573 HHDRQAVRDLAEV 585
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M0Z3 | KEA3_ARATH | No assigned EC number | 0.7118 | 0.9178 | 0.9355 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 791 | |||
| PRK03562 | 621 | PRK03562, PRK03562, glutathione-regulated potassiu | 1e-108 | |
| PRK03659 | 601 | PRK03659, PRK03659, glutathione-regulated potassiu | 4e-99 | |
| COG0475 | 397 | COG0475, KefB, Kef-type K+ transport systems, memb | 7e-67 | |
| pfam00999 | 370 | pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang | 4e-59 | |
| TIGR00932 | 273 | TIGR00932, 2a37, transporter, monovalent cation:pr | 2e-54 | |
| COG4651 | 408 | COG4651, RosB, Kef-type K+ transport system, predi | 7e-34 | |
| PRK10669 | 558 | PRK10669, PRK10669, putative cation:proton antipor | 4e-27 | |
| pfam02254 | 116 | pfam02254, TrkA_N, TrkA-N domain | 2e-20 | |
| COG1226 | 212 | COG1226, Kch, Kef-type K+ transport systems, predi | 2e-15 | |
| PLN03159 | 832 | PLN03159, PLN03159, cation/H(+) antiporter 15; Pro | 5e-11 | |
| COG0569 | 225 | COG0569, TrkA, K+ transport systems, NAD-binding c | 5e-07 | |
| COG0025 | 429 | COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport | 2e-05 |
| >gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-108
Identities = 185/565 (32%), Positives = 290/565 (51%), Gaps = 46/565 (8%)
Query: 118 LTFLAVTVIVVPVFKIARA---SPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFL 172
L +L V++VP IA +LG+ AG ++ L ++ ++ + +E+G++ +
Sbjct: 11 LIYLGAAVLIVP---IAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLM 67
Query: 173 LFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232
LF +GLEL RL L + FG G Q+V F + +G
Sbjct: 68 LFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCM----LLG------------- 110
Query: 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVI 292
+ + A++IG L+LSS+A +Q + E+ + T+ G + ILL QDIA +PL+ +
Sbjct: 111 -LRWQV---ALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAM 166
Query: 293 LPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLL 352
+P+L + + + +LK L L+ LGG+Y+ R VA + E F A+ L
Sbjct: 167 IPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALF 226
Query: 353 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 412
V G LL +++G S LGAFLAG +LA + +R +E+DI PF+GLLLGLFF+ G SID
Sbjct: 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSID 286
Query: 413 IELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSL 472
L +L LL G + IK ++ + +G+ ++ +LL QGGEFAFVVF
Sbjct: 287 FGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGA 346
Query: 473 ANRLGVLPLELNKLLIIVVVLSMALTP-LLNEIGRWAADFIDDKFGSEDKVEEMVNYEGS 531
A VL E KLL + V LSMA TP LL + R + + +E+ E
Sbjct: 347 AQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQ----SRTEEAREADEID--EQQ 400
Query: 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD 591
V+I GFG+ GQ++ LL L+S G D +P ++ RK G + YGD
Sbjct: 401 PRVIIAGFGRFGQIVGRLL---LSS-------GVKMTVLDHDPDHIETLRKFGMKVFYGD 450
Query: 592 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 651
A+R +L SAG + ++ D + +++ V+ ++ FP + I ARA+D+ H + L++A
Sbjct: 451 ATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQA 510
Query: 652 GATDAILENAETSLQLGSKLLKGFG 676
G E E +L+ G +L+ G
Sbjct: 511 GVEKPERETFEGALKSGRLVLESLG 535
|
Length = 621 |
| >gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = 4e-99
Identities = 199/576 (34%), Positives = 307/576 (53%), Gaps = 52/576 (9%)
Query: 111 NDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWG 168
+DL + FL V+ VP+ + +LG+ AGI + LG I ++ ++ SE G
Sbjct: 4 SDLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELG 63
Query: 169 ILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFH 228
++FL+F +GLEL+ ++L L + FG+G QV+LS L L
Sbjct: 64 VVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAG-------------LLMLTD 110
Query: 229 SRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVP 288
S AVV G L++SS+A LQL+ EKG + G +LL QD+AV+P
Sbjct: 111 F--------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIP 162
Query: 289 LLVILPVLESQVSESV-WPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFV 347
L ++P+L E W +K +K LA G+L +GG+YLLR +F +A + E F
Sbjct: 163 ALALVPLLAGSADEHFDW---MKIGMKVLAFAGML-IGGRYLLRPLFRFIAASGVREVFT 218
Query: 348 ALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407
A LL V G++L LG S LG F+AG +LAE+ +R ++E I PF+GLLLGLFF++
Sbjct: 219 AAALLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISV 278
Query: 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467
G ++++ +L+ VL + L+ +K L++ + GL E ++ +LSQGGEFAF
Sbjct: 279 GMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAF 338
Query: 468 VVFSLANRLGVLPLELNKLLIIVVVLSMALTPLL-NEIGRWAADFIDDKFGSEDKVEEMV 526
V+FS A+ +L + LL++VV LSM TPLL I +W A + ++ +E
Sbjct: 339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLA----RRLNGPEEEDEKP 394
Query: 527 NYEGSEP-VVIVGFGQMGQVLANLLSAPLASGSDGN----TVGWPFVAFDLNPSVVKESR 581
E +P V+IVGFG+ GQV+ LL A N TV + + S V R
Sbjct: 395 WVEDDKPQVIIVGFGRFGQVIGRLLMA--------NKMRITV------LERDISAVNLMR 440
Query: 582 KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 641
K G+ + YGDA++ +L +AG +A++I + + T++ V+ + FP + I ARA+
Sbjct: 441 KYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARG 500
Query: 642 MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGV 677
+ +L +AG T E ++L+LG K L G+
Sbjct: 501 RVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGM 536
|
Length = 601 |
| >gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 7e-67
Identities = 150/393 (38%), Positives = 211/393 (53%), Gaps = 31/393 (7%)
Query: 115 LDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVL---NQLGIIRNLTDVKVLSEWGILF 171
L L L V VI+ P+FK P+LG+ AGI+L L II + +++L+E G++F
Sbjct: 9 LQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVF 68
Query: 172 LLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231
LLF +GLE L RLK + + + G+G+ QV L+ L IL
Sbjct: 69 LLFLIGLEFDLERLKKVGR-SVGLGVAQVGLTAPFLLGLLL------LLGILGLSL---- 117
Query: 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLV 291
A+ +GAAL+LSS+A VL++L E G L TR G LG L+ DIA + LL
Sbjct: 118 --------IAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLA 169
Query: 292 ILPVLESQVSESVWPMLVKESLKALAGLGLLSL-GGKYLLRRVFEVVAEARSSEAFVALC 350
I+P L S SV +L L A+ L L G+YLL +F VA+ SSE F+
Sbjct: 170 IVPALAGGGSGSVGFILGL--LLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFV 227
Query: 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFR-GLLLGLFFVTTG 408
LL V G + L + LG S LGAFLAG +L+E+ +R ++E I PF GL + LFF++ G
Sbjct: 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVG 287
Query: 409 SSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFV 468
S+D+ +L +L L+A I+ K L +G + + ++ IGLLL QGGEFAFV
Sbjct: 288 MSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFV 347
Query: 469 VFSLANRLGVLPLELNKLLIIVVVLSMALTPLL 501
+ + + LL VV+LSM TP+L
Sbjct: 348 LAG----IALGSAISEALLTAVVILSMITTPIL 376
|
Length = 397 |
| >gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 4e-59
Identities = 122/386 (31%), Positives = 186/386 (48%), Gaps = 25/386 (6%)
Query: 120 FLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMG 177
L + ++ + + P++G AGI+L LG++ D++VL+E G+ LLF G
Sbjct: 4 LLLLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDLDLEVLAELGLPLLLFLAG 63
Query: 178 LELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIR 237
LEL L L+ K + L V++ L L +
Sbjct: 64 LELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGI------------------- 104
Query: 238 SIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLE 297
+ EA++ GAALS +S VL +L E+G L TR G+ LG +L D V LL +L L
Sbjct: 105 PLLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALA 164
Query: 298 SQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGT 357
S +L+ L G LL L +LLR + + E V L L
Sbjct: 165 GVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRF--TSGDRELEVLLVLALALLA 222
Query: 358 SLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDI-EL 415
+LL + LG S LGAFLAG +L+ F ++ + PF GL L LFFV+ G S+D+ L
Sbjct: 223 ALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLSSL 282
Query: 416 LFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANR 475
L VL LL +++ K L + + +GL+L+E++ +G Q G + + ++ +
Sbjct: 283 LLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQ 342
Query: 476 LGVLPLELNKLLIIVVVLSMALTPLL 501
LG++ EL LL+ VV+L+ L PLL
Sbjct: 343 LGLIDRELYTLLVAVVLLTTLLKPLL 368
|
Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370 |
| >gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-54
Identities = 118/298 (39%), Positives = 166/298 (55%), Gaps = 31/298 (10%)
Query: 121 LAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGL 178
L V+ VP+ + +LG+ AG+++ LG+I N+ V L+E+G++ L+F +GL
Sbjct: 1 LLAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGL 60
Query: 179 ELSLARLKALAKFAFGMGLTQVVLST--LAFTAFELPPNGAVGTRILEFLFHSRSDLVNI 236
EL L RL L K AFG+G+ QV++ L L
Sbjct: 61 ELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLAL------------------- 101
Query: 237 RSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVL 296
AVVIG L+LSS+A V+Q+L E+G L T FG LGILL QDIAVVPLL +LP+L
Sbjct: 102 ---GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLL 158
Query: 297 ESQVSES--VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTV 354
+ S +L+ LK LL L G++LLR V + AE R SE F A LL +
Sbjct: 159 ATSASTEHVALALLL---LKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLM 215
Query: 355 AGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 412
G++ LG S LGAFLAG +L+E+ +R ++E+D+ P G+LL LFF++ G S+D
Sbjct: 216 FGSAYFADLLGLSMALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273 |
| >gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 7e-34
Identities = 111/376 (29%), Positives = 178/376 (47%), Gaps = 30/376 (7%)
Query: 135 RASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192
R SP++G+ AG++ G + + T L+E G++ L+F +GL SL L A+ A
Sbjct: 29 RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIA 88
Query: 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS 252
L Q+ L+TL L S S +V G ALS++
Sbjct: 89 IPGALAQIALATL-----------------LGMGLSSLLGW----SFGTGIVFGLALSVA 127
Query: 253 SSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLES---QVSESVWPMLV 309
S+ +L+ L E+ + T+ G +G L+++D+A+V LV+LP L Q +LV
Sbjct: 128 STVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLV 187
Query: 310 KESL---KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL-G 365
+ K A + ++ + G+ L+ + E VA S E F L G + +L G
Sbjct: 188 DLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAELFG 247
Query: 366 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLA 425
S LGAF AG +LAE+ + D P R LFFV+ G D +L ++ VLA
Sbjct: 248 VSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLA 307
Query: 426 LLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNK 485
L ++ K++ I G ++ ++ I L+Q GEF+F++ L +L +LP
Sbjct: 308 TLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRD 367
Query: 486 LLIIVVVLSMALTPLL 501
L++ +LS+ L PLL
Sbjct: 368 LVLAGAILSILLNPLL 383
|
Length = 408 |
| >gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 135/525 (25%), Positives = 242/525 (46%), Gaps = 58/525 (11%)
Query: 135 RASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192
R SP++G+ AG++ G + + L+E G++ L+F +GL SL L A+ A
Sbjct: 29 RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIA 88
Query: 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS 252
+ Q+ ++TL G + +L + S+ +V G LS +
Sbjct: 89 IPGAIAQIAVATLL---------GMALSAVLGW------------SLMTGIVFGLCLSTA 127
Query: 253 SSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILP----VLESQ---VSESVW 305
S+ +L+ L E+ + ++ G +G L+++D+ +V LV+LP ++E +
Sbjct: 128 STVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAV 187
Query: 306 PMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVA-GTSLLTQKL 364
+ + K +A + ++ L G+ L+ + A S E F L +L +A G + +L
Sbjct: 188 DLGITIG-KVIAFIAIMMLVGRRLVPWILARSAATGSRELF-TLSVLALALGIAFGAVEL 245
Query: 365 -GFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNV 423
S LGAF AG +L E+ + D P R LFFV+ G D +L ++ V
Sbjct: 246 FDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAV 305
Query: 424 LALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLEL 483
LA LA ++ K+L + G + + ++ I L+Q GEFAF++ L L +LP
Sbjct: 306 LATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAG 365
Query: 484 NKLLIIVVVLSMALTPLL-NEIGRWAA--DFIDDKFGSEDKVEEMVNYEGSEPV------ 534
L++ +LS+ L P+L + R+ A + ++++ +EE + E PV
Sbjct: 366 QNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQT-----LEEAIEEEKQIPVDICNHA 420
Query: 535 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR 594
++VG+G++G +L L A G P V + + + V E R+ G + G+A+
Sbjct: 421 LLVGYGRVGSLLGEKLLA----------AGIPLVVIETSRTRVDELRERGIRAVLGNAAN 470
Query: 595 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639
++ A + + +++ + E V R P I I ARA
Sbjct: 471 EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515
|
Length = 558 |
| >gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-20
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
++I+G+G++G+ LA L G V D +P V+E R+ G P++ GDA+
Sbjct: 1 IIIIGYGRVGRSLAEELREG----------GPDVVVIDKDPERVEELREEGVPVVVGDAT 50
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
VL AGI AV+ D + I V R P + I ARA D H L++ GA
Sbjct: 51 DEEVLEEAGIEEADAVVAATGDDEANILIVLLARELNPKLKIIARANDPEHAELLRRLGA 110
Query: 654 TDAI 657
+ I
Sbjct: 111 DEVI 114
|
This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116 |
| >gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 2e-15
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
V+IVGFG++GQ++A L A G P V D + V+ R+LG ++ GDA+
Sbjct: 24 VIIVGFGRVGQIVARALLA----------SGIPVVVIDSDEDRVELLRELGLLVVLGDAT 73
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM-HLLDLKKAG 652
R VL +AGI +AV++ +D + V R P + I ARA+D+ + L G
Sbjct: 74 REEVLEAAGIERARAVIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVG 133
Query: 653 ATDAILENAETSLQLGSKLLKGFGVMS 679
A + + E++L L L G G S
Sbjct: 134 ADEVVPPTFESALLLARAALVGLGGDS 160
|
Length = 212 |
| >gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-11
Identities = 93/422 (22%), Positives = 182/422 (43%), Gaps = 48/422 (11%)
Query: 115 LDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVL------------NQLGIIRNLTDVK 162
L + T ++V + K R ++ G++L N + +R++ ++
Sbjct: 46 LQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLE 105
Query: 163 VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRI 222
++ G+L+ LF +G+E+ ++ ++ K A + + + L AF
Sbjct: 106 TMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAF------------ 153
Query: 223 LEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQ 282
F+FH S V+ + + +G ALS+++ + ++LAE + T G + L+
Sbjct: 154 -SFIFHQVSRNVHQGTF--ILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVN 210
Query: 283 DIAVVPLLVI---LPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAE 339
D+ LL + L +S S+W +L+ L ++ G +++RR E E
Sbjct: 211 DMCAWILLALAIALAENDSTSLASLW-VLLSSVAFVLFCFYVVRPGIWWIIRRTPE--GE 267
Query: 340 ARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF-RGL 398
SE ++ L L V + +T +G GAF+ G ++ + + F GL
Sbjct: 268 T-FSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGL 326
Query: 399 LLGLFFVTTGSSIDIELLFREWPNVLALLAGLI-------IIKTLIISAIGPRVGLTLQE 451
LL LFF +G ++ + + P LL +I I+ T+II+ + +E
Sbjct: 327 LLPLFFAISGLKTNVTKI--QGPATWGLLVLVIIMASAGKIMGTIIIAFF---YTMPFRE 381
Query: 452 SVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMAL-TPLLNEIGRWAAD 510
+ +G L++ G +V ++ VL E ++++V V AL TP++ + R A
Sbjct: 382 GITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARR 441
Query: 511 FI 512
+
Sbjct: 442 LV 443
|
Length = 832 |
| >gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 21/215 (9%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE--SRKLGFPILYGD 591
++I+G G++G+ +A LS +G+ V V D + V+E + +L ++ GD
Sbjct: 3 IIIIGAGRVGRSVARELS------EEGHNV----VLIDRDEERVEEFLADELDTHVVIGD 52
Query: 592 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 651
A+ VL AGI AV+ + + F + ARA++ H L+K
Sbjct: 53 ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKL 112
Query: 652 GATDAILENAETSLQLGSKLLKG--FGVMSDDVTFLRQLVRNSMEIQA--QEVLSQKDDQ 707
GA I +L + D + +E + L+ K +
Sbjct: 113 GADVIIS----PEKLAAKRLARLIVTPGALDVLELAGGDA-EVIEEKVAEDSPLAGKTLR 167
Query: 708 EFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSRED 742
E D+ P V V I + D L D
Sbjct: 168 ELDLRLPYDVNVIAIKRGGNELIIPRGDTTLEAGD 202
|
Length = 225 |
| >gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 83/407 (20%), Positives = 139/407 (34%), Gaps = 53/407 (13%)
Query: 115 LDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNLTDV----KVLSEWGIL 170
L L + ++V + I G++ G+ D+ ++ +
Sbjct: 9 FLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLA 68
Query: 171 FLLFEMGLELSLARLK----ALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFL 226
LLF GLEL L L+ ++ A + L + L
Sbjct: 69 ILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIP----------- 117
Query: 227 FHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQD-IA 285
+ A ++GA LS + + + ++ +P R + G LL D +
Sbjct: 118 ------------LAAAFLLGAILS-PTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVG 164
Query: 286 VVPLLVILPVLESQVSESVWPMLVKESLKALAGLG---LLSLGGKYLLRRVFEVVAEARS 342
+V V L L + S+ L+ ++AL G+ LL LLRR+ +
Sbjct: 165 IVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPL 224
Query: 343 SEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRG----- 397
E + LL LL + LG S L +AG +L E A R
Sbjct: 225 LETLLT--LLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEV 282
Query: 398 ---LLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLI---ISAIGPRVGLTLQE 451
LL GL FV G+ + + LL L + +++ + +S G + L
Sbjct: 283 LDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPL 342
Query: 452 SVRIGLLLSQGGEF----AFVVFSLANRLGVLPLELNKLLIIVVVLS 494
R L LS G + + L EL ++ +V+L
Sbjct: 343 PWRERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389
|
Length = 429 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 791 | |||
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 100.0 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 100.0 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 100.0 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 100.0 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 100.0 | |
| COG4651 | 408 | RosB Kef-type K+ transport system, predicted NAD-b | 100.0 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 100.0 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 100.0 | |
| PF00999 | 380 | Na_H_Exchanger: Sodium/hydrogen exchanger family; | 100.0 | |
| COG3263 | 574 | NhaP-type Na+/H+ and K+/H+ antiporters with a uniq | 100.0 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 100.0 | |
| KOG1650 | 769 | consensus Predicted K+/H+-antiporter [Inorganic io | 99.97 | |
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 99.96 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 99.96 | |
| TIGR00840 | 559 | b_cpa1 sodium/hydrogen exchanger 3. This model is | 99.93 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 99.92 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 99.91 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 99.87 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 99.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 99.77 | |
| KOG1965 | 575 | consensus Sodium/hydrogen exchanger protein [Inorg | 99.74 | |
| KOG4505 | 467 | consensus Na+/H+ antiporter [Inorganic ion transpo | 99.71 | |
| PRK14853 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.62 | |
| COG1226 | 212 | Kch Kef-type K+ transport systems, predicted NAD-b | 99.54 | |
| TIGR00773 | 373 | NhaA Na+/H+ antiporter NhaA. These proteins are me | 99.23 | |
| PRK14856 | 438 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.02 | |
| KOG1966 | 670 | consensus Sodium/hydrogen exchanger protein [Inorg | 98.9 | |
| PRK14854 | 383 | nhaA pH-dependent sodium/proton antiporter; Provis | 98.82 | |
| PRK09561 | 388 | nhaA pH-dependent sodium/proton antiporter; Review | 98.8 | |
| PRK09560 | 389 | nhaA pH-dependent sodium/proton antiporter; Review | 98.76 | |
| PRK14855 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 98.63 | |
| COG3004 | 390 | NhaA Na+/H+ antiporter [Inorganic ion transport an | 98.52 | |
| PF06965 | 378 | Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP | 98.45 | |
| PF05684 | 378 | DUF819: Protein of unknown function (DUF819); Inte | 98.14 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 98.07 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.88 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.79 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 97.77 | |
| PF03812 | 314 | KdgT: 2-keto-3-deoxygluconate permease; InterPro: | 97.58 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.58 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.51 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.29 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.26 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.23 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 97.19 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 97.04 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.03 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.95 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.91 | |
| COG3400 | 471 | Uncharacterized protein conserved in bacteria [Fun | 96.86 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.79 | |
| TIGR00793 | 314 | kdgT 2-keto-3-deoxygluconate transporter. This fam | 96.75 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.75 | |
| PF06241 | 206 | DUF1012: Protein of unknown function (DUF1012); In | 96.73 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.72 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.71 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.7 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.63 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.58 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.55 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 96.51 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.5 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.5 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.48 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.43 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.43 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 96.42 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 96.4 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.4 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.4 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 96.38 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.36 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.32 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.31 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.26 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.22 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.22 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.16 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.15 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.1 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.09 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.09 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.04 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 96.03 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.01 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.01 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.0 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.93 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.92 | |
| PRK03818 | 552 | putative transporter; Validated | 95.9 | |
| PF03956 | 191 | DUF340: Membrane protein of unknown function (DUF3 | 95.9 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 95.84 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 95.82 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 95.81 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 95.8 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.79 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.78 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.76 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 95.71 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.71 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.69 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.69 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.69 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.68 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 95.68 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 95.54 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.53 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 95.52 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.5 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.49 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 95.43 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.42 | |
| COG0385 | 319 | Predicted Na+-dependent transporter [General funct | 95.42 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.38 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.38 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 95.38 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.33 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.32 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 95.31 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.29 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.24 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 95.24 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 95.2 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 95.18 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.11 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 95.05 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.04 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 95.02 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 95.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 95.0 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 94.99 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.98 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.98 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 94.98 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 94.94 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.94 | |
| PRK03818 | 552 | putative transporter; Validated | 94.89 | |
| PRK04972 | 558 | putative transporter; Provisional | 94.81 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 94.8 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 94.75 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.75 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 94.74 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 94.73 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.69 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 94.67 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 94.64 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.63 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.59 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 94.56 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.56 | |
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 94.55 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.54 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 94.52 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 94.51 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.48 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.47 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.41 | |
| PF01758 | 187 | SBF: Sodium Bile acid symporter family; InterPro: | 94.39 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 94.32 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.31 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 94.31 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.28 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.21 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 94.14 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 94.13 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.12 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 94.11 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.09 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 94.05 | |
| PRK05274 | 326 | 2-keto-3-deoxygluconate permease; Provisional | 94.02 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.99 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 93.97 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.89 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.86 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.86 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.84 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 93.77 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.65 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 93.63 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.59 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 93.54 | |
| PLN00106 | 323 | malate dehydrogenase | 93.52 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 93.48 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 93.46 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.46 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.46 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 93.44 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 93.44 | |
| TIGR03082 | 156 | Gneg_AbrB_dup membrane protein AbrB duplication. T | 93.43 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.41 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 93.41 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.41 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 93.41 | |
| PLN02712 | 667 | arogenate dehydrogenase | 93.37 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.36 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 93.33 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 93.33 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.27 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 93.27 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.26 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 93.24 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.23 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 93.21 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 93.17 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 93.17 | |
| PF13593 | 313 | DUF4137: SBF-like CPA transporter family (DUF4137) | 93.15 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.15 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.04 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 93.03 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 93.02 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 92.98 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 92.98 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 92.94 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 92.94 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 92.88 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 92.81 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 92.78 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 92.77 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 92.74 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 92.73 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 92.71 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 92.69 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 92.68 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 92.67 | |
| TIGR00832 | 328 | acr3 arsenical-resistance protein. The first prote | 92.67 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 92.56 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 92.54 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 92.53 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.52 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.48 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.47 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 92.36 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 92.34 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 92.33 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 92.29 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 92.25 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.13 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 92.13 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 92.12 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.11 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 92.11 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 92.1 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 92.07 | |
| TIGR00841 | 286 | bass bile acid transporter. Functionally character | 92.02 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 92.02 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 92.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 91.98 | |
| COG2985 | 544 | Predicted permease [General function prediction on | 91.97 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 91.93 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 91.92 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.9 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.89 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.88 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 91.84 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 91.83 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 91.74 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 91.72 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 91.68 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 91.57 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 91.55 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 91.52 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 91.52 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 91.51 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 91.45 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 91.44 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 91.42 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 91.39 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 91.39 | |
| PF06826 | 169 | Asp-Al_Ex: Predicted Permease Membrane Region; Int | 91.28 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 91.26 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 91.25 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.24 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 91.22 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 91.22 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 91.22 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 91.18 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 91.08 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 91.08 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 91.07 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 91.01 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 90.99 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 90.97 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 90.95 | |
| COG3180 | 352 | AbrB Putative ammonia monooxygenase [General funct | 90.93 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.92 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 90.88 | |
| TIGR00783 | 347 | ccs citrate carrier protein, CCS family. These pro | 90.87 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 90.86 | |
| PRK08643 | 256 | acetoin reductase; Validated | 90.86 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 90.85 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 90.83 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 90.81 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 90.79 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 90.79 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 90.77 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 90.77 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.76 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 90.74 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 90.69 | |
| COG0679 | 311 | Predicted permeases [General function prediction o | 90.68 | |
| TIGR01625 | 154 | YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati | 90.66 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 90.65 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 90.65 | |
| PLN02602 | 350 | lactate dehydrogenase | 90.62 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.61 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 90.6 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 90.57 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 90.56 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 90.55 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 90.49 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.48 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 90.44 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 90.43 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 90.41 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 90.39 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 90.37 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.35 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.35 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.35 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 90.34 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 90.32 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 90.29 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.27 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.25 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 90.24 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 90.22 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 90.21 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 90.18 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 90.11 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 90.05 | |
| PRK04972 | 558 | putative transporter; Provisional | 90.03 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 90.01 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 89.99 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 89.99 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 89.99 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 89.97 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 89.92 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 89.84 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 89.8 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 89.79 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.78 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 89.73 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 89.72 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 89.72 | |
| TIGR03082 | 156 | Gneg_AbrB_dup membrane protein AbrB duplication. T | 89.71 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 89.7 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 89.69 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 89.69 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 89.66 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 89.62 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 89.58 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 89.56 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 89.5 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.49 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.48 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 89.48 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 89.46 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 89.41 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 89.4 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 89.36 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 89.32 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 89.28 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.27 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 89.26 | |
| PLN02477 | 410 | glutamate dehydrogenase | 89.26 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 89.25 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 89.21 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 89.21 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 89.21 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 89.2 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.05 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 89.01 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 89.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 88.98 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 88.96 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 88.95 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 88.95 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 88.95 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 88.94 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.88 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 88.87 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 88.84 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 88.84 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 88.83 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 88.79 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 88.71 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 88.71 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 88.67 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 88.6 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 88.59 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 88.58 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 88.57 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 88.56 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 88.52 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 88.44 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 88.36 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 88.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.28 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.27 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.26 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 88.26 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 88.25 | |
| PRK08223 | 287 | hypothetical protein; Validated | 88.24 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.24 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 88.22 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 88.21 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 88.18 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 88.14 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 88.1 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 88.05 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 88.01 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 87.78 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 87.77 | |
| PLN02928 | 347 | oxidoreductase family protein | 87.75 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 87.69 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 87.66 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 87.61 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 87.6 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 87.59 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 87.5 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 87.48 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 87.46 | |
| PF05145 | 318 | AmoA: Putative ammonia monooxygenase; InterPro: IP | 87.45 | |
| TIGR00946 | 321 | 2a69 he Auxin Efflux Carrier (AEC) Family. | 87.36 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 87.35 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.35 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 87.31 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 87.31 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 87.25 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 87.24 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 87.23 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 87.23 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 87.21 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 87.17 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 87.15 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 87.14 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 87.13 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 87.13 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 87.13 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 87.09 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 87.08 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 87.07 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 87.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 86.99 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 86.85 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 86.84 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 86.84 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 86.84 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 86.83 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 86.82 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 86.8 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 86.77 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 86.77 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 86.76 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 86.76 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 86.74 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 86.64 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 86.59 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 86.57 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 86.52 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.52 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 86.48 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.46 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 86.44 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 86.44 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 86.43 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 86.4 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 86.4 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 86.39 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 86.35 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 86.3 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 86.27 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 86.25 | |
| PF03390 | 414 | 2HCT: 2-hydroxycarboxylate transporter family; Int | 86.18 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 85.97 | |
| TIGR00783 | 347 | ccs citrate carrier protein, CCS family. These pro | 85.96 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 85.94 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 85.94 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 85.92 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 85.91 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 85.82 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 85.81 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 85.77 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 85.77 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.75 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 85.74 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 85.73 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 85.72 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 85.72 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 85.71 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 85.69 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 85.67 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 85.57 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 85.55 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 85.54 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.45 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 85.44 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 85.43 |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=710.96 Aligned_cols=552 Identities=33% Similarity=0.549 Sum_probs=490.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
+++++++++++++.+++++++|+|+|+++|||++|+++|| +|++++.+.++.++|+|++++||.+|+|+|++++|+.+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~ 84 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3577888899999999999999999999999999999999 57788888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
|+++.++..++++++++++.+ .+++| ++|..++++|++++.|||++++++++|++++++
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~-------------~~~~g--------~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t 143 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLF-------------CMLLG--------LRWQVALLIGLGLALSSTAIAMQAMNERNLMVT 143 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999998765543 35666 689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVAL 349 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~ 349 (791)
+.|+.+++++++||+++++++++++.+...+............++.++++++++++++|+.+++++|+.+.+++|.+...
T Consensus 144 ~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~ 223 (621)
T PRK03562 144 QMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAV 223 (621)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999999999999999998876654211111112222344455555556677899999999999988889998888
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 350 CLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 350 ~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
+++++++++++++.+|+|+++|||+||++++++++++++++++++|+++|+|+||+++|+++|++.+..+|+.++.++++
T Consensus 224 ~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~ 303 (621)
T PRK03562 224 ALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLG 303 (621)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999987777776667777
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAA 509 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l~ 509 (791)
.+++|+++++..++++|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.+++++++|++++|++..+..+..
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~ 383 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLE 383 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988765543
Q ss_pred hhhhhhcCCcchhhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE
Q 003861 510 DFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY 589 (791)
Q Consensus 510 ~~l~~~~~~~~~~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~ 589 (791)
.. +..+... ++.. .+.++|++||||||+|+.+++.|. ++|+++++||.|+++++++++.|.++++
T Consensus 384 ~~---~~~~~~~-~~~~-~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 384 QS---RTEEARE-ADEI-DEQQPRVIIAGFGRFGQIVGRLLL----------SSGVKMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred HH---Hhhhccc-cccc-ccccCcEEEEecChHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhcCCeEEE
Confidence 21 1111101 1111 134789999999999999999998 8999999999999999999999999999
Q ss_pred ccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHH
Q 003861 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 590 GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
||++|+++|+++|+++||.+|++++||+.|..++..+|+.||+++++||++|++|.+.|+++|||+|+.+..+.+.++++
T Consensus 449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGR 528 (621)
T ss_pred EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHhcccccceee
Q 003861 670 KLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699 (791)
Q Consensus 670 ~~l~~l~~~~~~~~~l~~~~~~~~~~~~~e 699 (791)
+++..+|.+++.++...+.+|+.++....+
T Consensus 529 ~~L~~lg~~~~~~~~~~~~~r~~~~~~~~~ 558 (621)
T PRK03562 529 LVLESLGLGPYEARERADRFRRHNLQMVEE 558 (621)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888766555544
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-78 Score=704.17 Aligned_cols=550 Identities=34% Similarity=0.542 Sum_probs=485.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
+++.++++++.++.+.+++++|+|+|+++||+++|+++|| +|++++.+.++.++++|++++||.+|+|+|++++|+.+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567778889999999999999999999999999999999 57788888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
+.++.++..++++|+++++.+ .+++| ++|..++++|++++.||+++++++++|+|..++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~-------------~~~~g--------~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t 143 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGL-------------LMLTD--------FSWQAAVVGGIGLAMSSTAMALQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999999999998765543 24466 689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQVSES-VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVA 348 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~ 348 (791)
+.|+++++++++||+.+++++.+++.+....... .|.. ....+..++++.++++|+.+++++++.+.+.+|.++.
T Consensus 144 ~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 219 (601)
T PRK03659 144 ESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMK----IGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTA 219 (601)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999998887765432221 1221 1222233344456688999999999988888999988
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 349 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 349 ~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
.+++++++.+++++.+|+|+++|||+||+++++++++|++++++++|+++|.|+||+++|+++|+..+.++|+.++.+++
T Consensus 220 ~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~ 299 (601)
T PRK03659 220 AALLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVV 299 (601)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999998888777777777
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHH
Q 003861 429 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA 508 (791)
Q Consensus 429 ~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l 508 (791)
+.+++|++++++.++.+|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.++.++++|++++|++.++..+.
T Consensus 300 ~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~ 379 (601)
T PRK03659 300 VLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKW 379 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred H-hhhhhhcCCcchhhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE
Q 003861 509 A-DFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587 (791)
Q Consensus 509 ~-~~l~~~~~~~~~~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~ 587 (791)
. ++..... ... ..+ ...+.++|++||||||+|+.+++.|. ++|++|++||.||++++++++.|.++
T Consensus 380 ~~~~~~~~~-~~~-~~~-~~~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v 446 (601)
T PRK03659 380 LARRLNGPE-EED-EKP-WVEDDKPQVIIVGFGRFGQVIGRLLM----------ANKMRITVLERDISAVNLMRKYGYKV 446 (601)
T ss_pred HHHhhcccc-ccc-ccc-ccccccCCEEEecCchHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhCCCeE
Confidence 2 2221110 100 011 11135789999999999999999998 89999999999999999999999999
Q ss_pred EEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHH
Q 003861 588 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQL 667 (791)
Q Consensus 588 v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~l 667 (791)
++||++|+++|+++|+++||++|++++||+.|..++..+|+.+|+.+|+||++|++|.+.|+++|||+|+.++.+++.++
T Consensus 447 ~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l 526 (601)
T PRK03659 447 YYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALEL 526 (601)
T ss_pred EEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhcccccceee
Q 003861 668 GSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQE 699 (791)
Q Consensus 668 a~~~l~~l~~~~~~~~~l~~~~~~~~~~~~~e 699 (791)
+++++..+|.+++.+....+.+|++++....+
T Consensus 527 ~~~~L~~lg~~~~~~~~~~~~~r~~~~~~~~~ 558 (601)
T PRK03659 527 GRKTLVSLGMHPHQAQRAQQHFRRLDMRMLRE 558 (601)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888655444433
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=650.54 Aligned_cols=528 Identities=25% Similarity=0.354 Sum_probs=452.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 115 LDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 115 ~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
..+.++++++.+++.+++|+|+|+++||+++|+++||. |++++.+.++.++++|++++||.+|+|+|++.+|+.++..
T Consensus 9 ~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~ 88 (558)
T PRK10669 9 TTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHH
Confidence 34456778899999999999999999999999999994 6677778899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhH
Q 003861 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFG 272 (791)
Q Consensus 193 ~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g 272 (791)
+..+..+++++++...++ .+.++ +++..++++|++++.||+++++++++|+|..+++.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------~~~~~--------~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 89 IPGAIAQIAVATLLGMAL-------------SAVLG--------WSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcch
Confidence 877888877776544332 35566 688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhc---cCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHH
Q 003861 273 SATLGILLLQDIAVVPLLVILPVLESQ---VSESVW---PMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAF 346 (791)
Q Consensus 273 ~l~l~~~~l~Di~~v~~l~i~~~l~~~---~~~~~~---~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~ 346 (791)
+++++++++||+++++++.++..+... +..+.. ....+.++..++++++..++++++.+|++++..+.+.+|.+
T Consensus 148 ~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~ 227 (558)
T PRK10669 148 QIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELF 227 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 999999999999999888887655421 111111 11223334444555555667788888888888777778888
Q ss_pred HHHHHHHHHHHHH-HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHH
Q 003861 347 VALCLLTVAGTSL-LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLA 425 (791)
Q Consensus 347 ~~~~l~~~~~~~~-la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~ 425 (791)
....+++++++++ .++.+|+|+++|||+||++++++++++++.+...+++++|.|+||+++|+++|+..+.+++..++.
T Consensus 228 ~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~ 307 (558)
T PRK10669 228 TLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLA 307 (558)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 7777777777765 469999999999999999999999999998888899999999999999999999988777666666
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHH
Q 003861 426 LLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIG 505 (791)
Q Consensus 426 l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~ 505 (791)
+++..+++|+++++..++++|.++|+++.+|+.|+|+|+++++++..+.+.|+++++.|+.++.++++|++++|++.++.
T Consensus 308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHhhhhhhcCCc--ch--hhhhhcccCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 506 RWAADFIDDKFGSE--DK--VEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 506 ~~l~~~l~~~~~~~--~~--~~~~~~~~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
.+...+..+...+. +. .++..+.+.+||++|||||++|+.++++|+ ++|++|++||.|++++++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~----------~~g~~vvvId~d~~~~~~~~ 457 (558)
T PRK10669 388 ERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLL----------AAGIPLVVIETSRTRVDELR 457 (558)
T ss_pred hHHHHHhhhccccccccccccccccccccCCCEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHH
Confidence 66544332211110 00 111233456899999999999999999998 89999999999999999999
Q ss_pred hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcH
Q 003861 582 KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 582 ~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.|.++++||++|+++|+++|+++||+++++++||++|..++.++|+.+|+.+|+||++|++|.+.++++|||+|++|++
T Consensus 458 ~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~ 537 (558)
T PRK10669 458 ERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGER 537 (558)
T ss_pred HCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003861 662 ETSLQLGSKLLK 673 (791)
Q Consensus 662 ~~~~~la~~~l~ 673 (791)
+.++++++.+.+
T Consensus 538 ~~a~~i~~~l~~ 549 (558)
T PRK10669 538 EIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHhcC
Confidence 999999887766
|
|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=404.34 Aligned_cols=374 Identities=39% Similarity=0.563 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--C-CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 113 LGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--G-IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 113 l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--g-li~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
.+.+..+++.++.+.+++++|+|+|+++||+++|+++||. + +.++++.++.++|+|++++||.+|+|+|++++|+++
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhc
Confidence 4667778899999999999999999999999999999993 3 345678899999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCC
Q 003861 190 KF-AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELP 268 (791)
Q Consensus 190 ~~-~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~ 268 (791)
|+ .+..+..++.+++++.+... .. .+| .++..++++|.+++.||+++++++++|+|..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~-----------~~-~~g--------~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~ 146 (397)
T COG0475 87 RSVGLGVAQVGLTAPFLLGLLLL-----------LG-ILG--------LSLIAALFLGAALALSSTAIVLKILMELGLLK 146 (397)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH-----------HH-Hhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99 55555555544443322110 11 356 68999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 003861 269 TRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVA 348 (791)
Q Consensus 269 ~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~ 348 (791)
++.|++.++++++||+++++++++...+..++..+... +...+.....+.++....++|+.+++++++.+.+.+|.+..
T Consensus 147 ~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~-~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~ 225 (397)
T COG0475 147 TREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGF-ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFIL 225 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999999999999998886543333221 22334444555555555578999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch-hHHHHhhhchHh-HHHHHHHHHHcccCChHHHHhhhHHHHHH
Q 003861 349 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRG-LLLGLFFVTTGSSIDIELLFREWPNVLAL 426 (791)
Q Consensus 349 ~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~-~~i~~~l~~~~~-~f~~lFFv~vG~~l~l~~l~~~~~~~l~l 426 (791)
.++.++++.++++|.+|+|+++|||+||+++++++++ |+++++++++++ +|+|+||+.+|+++|++.+..++..++.+
T Consensus 226 ~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~ 305 (397)
T COG0475 226 FVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLL 305 (397)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999888 899999999987 99999999999999999999888877778
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
+.+.++.|.+++++.++..|.++|++...|+.+.++||++++++..+.. +.++++.+.. +++++++.+|+.....+
T Consensus 306 ~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~---~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 306 VALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTA---VVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999998866 3455554444 45556666666555555
Q ss_pred HHHhh
Q 003861 507 WAADF 511 (791)
Q Consensus 507 ~l~~~ 511 (791)
++.++
T Consensus 382 ~~~~~ 386 (397)
T COG0475 382 ILLKR 386 (397)
T ss_pred HHHHH
Confidence 55443
|
|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=428.15 Aligned_cols=383 Identities=21% Similarity=0.326 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCcC----------CchhHHHHHHHHHHHHHHHHhhc
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGIIR----------NLTDVKVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli~----------~~~~l~~l~elgl~~lLF~~Gle 179 (791)
.+++++.++++++.+++.+++|+|+|.++|||++|+++|| +|+++ +.+.++.++++|++++||.+|+|
T Consensus 43 ~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 43 LFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 4467888899999999999999999999999999999999 46542 12468999999999999999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQ 259 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~ 259 (791)
+|++.+|+.+|+++.+++.++++++++...+. ++++.... .......++++|.++|.||.+++.+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~-------------~~l~~~~~--~~~~~~~~l~~g~alS~Ts~pVv~r 187 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFS-------------FIFHQVSR--NVHQGTFILFLGVALSVTAFPVLAR 187 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-------------HHHhhccc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999987655431 12221100 0012345789999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003861 260 LLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAE 339 (791)
Q Consensus 260 lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~ 339 (791)
+|+|+|+++++.|+++++.++++|++++++++++..+...+..... .++.++..++++++.+++.+++++|+.++..+
T Consensus 188 iL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~--~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~ 265 (832)
T PLN03159 188 ILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLA--SLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPE 265 (832)
T ss_pred HHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999999999999887665433221111 11222222333333333334444444443322
Q ss_pred h-ccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhch-HhHHHHHHHHHHcccCChHHHH
Q 003861 340 A-RSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLF 417 (791)
Q Consensus 340 ~-~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~-~~~f~~lFFv~vG~~l~l~~l~ 417 (791)
. ...|.++.++++++++++++++.+|+|.++|||++|+++++.++++.+.++++++ .++|+|+||+++|+++|+..+.
T Consensus 266 ~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 266 GETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 1 1346667777777888899999999999999999999999988889999999999 7999999999999999998885
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHH-HHH
Q 003861 418 RE--WPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVV-VLS 494 (791)
Q Consensus 418 ~~--~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~v-vlt 494 (791)
.. |..++.++++.+++|++++++.++++|+++++++.+|+.|++||+++++++..+.+.|+++++.|+++++++ ++|
T Consensus 346 ~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T 425 (832)
T PLN03159 346 GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMT 425 (832)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHH
Confidence 42 444455566678899999999999999999999999999999999999999999999999999999988765 569
Q ss_pred HHhHhHHHHHHHHHHhh
Q 003861 495 MALTPLLNEIGRWAADF 511 (791)
Q Consensus 495 ~iltpll~~l~~~l~~~ 511 (791)
++++|++..++++-.++
T Consensus 426 ~i~~Plv~~ly~p~rk~ 442 (832)
T PLN03159 426 ALITPVVTVVYRPARRL 442 (832)
T ss_pred HHHHHHHHHHhCHHhhh
Confidence 99999999887765544
|
|
| >COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=354.43 Aligned_cols=374 Identities=29% Similarity=0.414 Sum_probs=329.0
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 118 LTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 118 ~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
..-+..+++++.++.|+|+||.+||+++|+++||+ |.+.++.....++|+|++++||.+|++++++++...+..++.-
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipg 91 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPG 91 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcch
Confidence 34577899999999999999999999999999994 8887777788999999999999999999999998877767666
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHH
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSAT 275 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~ 275 (791)
++.|..+.+.... . +.++.| +++...+++|.++|.+|+.+..+-++|+++.+++.|+++
T Consensus 92 Al~qia~at~lg~------------g-L~~~lg--------ws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA 150 (408)
T COG4651 92 ALAQIALATLLGM------------G-LSSLLG--------WSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA 150 (408)
T ss_pred HHHHHHHHHHHHh------------H-HHHHcC--------CCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence 7777665543322 2 356777 688899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhc---cC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 003861 276 LGILLLQDIAVVPLLVILPVLESQ---VS---ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVAL 349 (791)
Q Consensus 276 l~~~~l~Di~~v~~l~i~~~l~~~---~~---~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~ 349 (791)
+|..+++|++.++.++..+.+++- .+ .+....+..++.|...+..++.+++|.+.||++++++.+.++|.+.+.
T Consensus 151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~ 230 (408)
T COG4651 151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLA 230 (408)
T ss_pred EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999998877542 11 122334556777888888899999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 350 CLLTVAGTSL-LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 350 ~l~~~~~~~~-la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
.+.++++.++ .++.+|+|..+|||++||++++++.+|+..+..-|+++.|..+||+++||..|+..+.+....++..++
T Consensus 231 vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatll 310 (408)
T COG4651 231 VLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLL 310 (408)
T ss_pred HHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHH
Confidence 8888888776 778999999999999999999999999999999999999999999999999999999887777777778
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHHHHHHH
Q 003861 429 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA 508 (791)
Q Consensus 429 ~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~l~~~l 508 (791)
.++.+|-+..++..+.+|.|.|+++.++..+.|.|||+++++..+.+.+++++.--..++...+++++..|+.....++.
T Consensus 311 ii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~ 390 (408)
T COG4651 311 IILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRY 390 (408)
T ss_pred HHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999998777888888999999999999877765
Q ss_pred Hhhh
Q 003861 509 ADFI 512 (791)
Q Consensus 509 ~~~l 512 (791)
.++.
T Consensus 391 ~~~~ 394 (408)
T COG4651 391 QRSA 394 (408)
T ss_pred hhhh
Confidence 5443
|
|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=367.53 Aligned_cols=369 Identities=20% Similarity=0.203 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC--c--CCchhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI--I--RNLTDVKVLSEWGILFLLFEMGLELSLARLKA 187 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl--i--~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~ 187 (791)
.+++...++++++.+++.+++|+++|.+++|+++|+++||.++ + ++.+..+.++++++++++|.+|+|+|++.+|+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 4566777888999999999999999999999999999999543 3 44567899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-
Q 003861 188 LAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE- 266 (791)
Q Consensus 188 ~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~- 266 (791)
.+++++.+++.++++|+++++.+ +++++| ++|..++++|+++++||++++.+++++.++
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~------------~~~l~g--------~~~~~alllgai~s~Td~a~v~~iL~~~~l~ 145 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLF------------AHWLLG--------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLN 145 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHhc--------CCHHHHHHHhhhhccCchHHHHHHHhccCCC
Confidence 99999999999999998776544 356777 799999999999999999999999999995
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 003861 267 LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEA 345 (791)
Q Consensus 267 ~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~ 345 (791)
.+++.++++.+++.+||.++++++.++..+...+.. ..+.. ...+...+++.++++++.+++..+++++.. ...++.
T Consensus 146 l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~-~~~~~~ 223 (562)
T PRK05326 146 LKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGF-LLLFLQQFGLGALIGLLGGWLLVQLLNRIA-LPAEGL 223 (562)
T ss_pred cchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhH
Confidence 788999999999999999998877766544332221 22222 223334444444444555677777777662 223456
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc--chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHH
Q 003861 346 FVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNV 423 (791)
Q Consensus 346 ~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~--~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~ 423 (791)
+..+++.+++.++++++.+|.|+++|+|++|++++|.+ .++.+++..+.+.+++.++||+++|+.+|++.+.+.++..
T Consensus 224 ~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~ 303 (562)
T PRK05326 224 YPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPA 303 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66677777888889999999999999999999999874 4456777777788899999999999999999887654443
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcch-hhhhHHHHHHHHHHHhHhHH
Q 003861 424 LAL-LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL-ELNKLLIIVVVLSMALTPLL 501 (791)
Q Consensus 424 l~l-~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~-~~~~~iv~~vvlt~iltpll 501 (791)
+.+ ++..+++|++++++....+++++||+.++||. ++||+++++++..+...|..+. ..+.++++++++|+++.+..
T Consensus 304 l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~t 382 (562)
T PRK05326 304 LLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTT 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhh
Confidence 333 34567889999999888899999999999995 8999999999999999998864 55677777788888886554
Q ss_pred HH
Q 003861 502 NE 503 (791)
Q Consensus 502 ~~ 503 (791)
..
T Consensus 383 l~ 384 (562)
T PRK05326 383 LP 384 (562)
T ss_pred HH
Confidence 43
|
|
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=296.64 Aligned_cols=270 Identities=43% Similarity=0.708 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHH
Q 003861 122 AVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQ 199 (791)
Q Consensus 122 ~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~ 199 (791)
+++.+.+.++||+|+|++++++++|+++||. |.+++.+.++.++++|+.+++|.+|+|+|++.+|+++|++..++..+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999994 66777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHH
Q 003861 200 VVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGIL 279 (791)
Q Consensus 200 ~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~ 279 (791)
+++++++++.. ..++++ .++..++++|+++++||++++.++++|+|..+++.|+++++++
T Consensus 82 ~~~~~~~~~~~------------~~~~~~--------~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~ 141 (273)
T TIGR00932 82 VLVPGVLLGLL------------LGHLLG--------LALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGIL 141 (273)
T ss_pred HHHHHHHHHHH------------HHHHHC--------CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHH
Confidence 99995444432 245666 6899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 003861 280 LLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL 359 (791)
Q Consensus 280 ~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~ 359 (791)
++||+.+++++.+......+.+.+.. .....+...+++..+.++.++|..+++.++..+.+..|.....++.+++..++
T Consensus 142 ~~~D~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (273)
T TIGR00932 142 LFQDIAVVPLLALLPLLATSASTEHV-ALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAY 220 (273)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 99999999998887665442222211 12223334444444455667778888888776655667777778888888889
Q ss_pred HHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCC
Q 003861 360 LTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 412 (791)
Q Consensus 360 la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~ 412 (791)
+++.+|+|+.+|||++|+++++.+.+++++++++++.++|.|+||+++|+++|
T Consensus 221 la~~~g~s~~lgaf~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 221 FADLLGLSMALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHhCCcHHHHHHHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 99999999999999999999998888889999999999999999999999886
|
|
| >PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=348.43 Aligned_cols=359 Identities=29% Similarity=0.445 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccC--CcCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 003861 120 FLAVTVIVVPVFKIARASPILGFFFAGIVLNQLG--IIRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 196 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~g--li~~~-~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la 196 (791)
+++.+.+.+.++||+++|++++|+++|+++||.+ +++++ +..+.++++|+.+++|.+|+|+|.+.+|+++++.+.++
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~ 83 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALG 83 (380)
T ss_dssp --------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-------------
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 3445666666899999999999999999999964 45666 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhhHHHH---hhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHH
Q 003861 197 LTQVVLSTLAFTAFELPPNGAVGTRILEF---LFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGS 273 (791)
Q Consensus 197 ~~~~llt~~~~~~~~~p~~~~lG~~~~~~---l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~ 273 (791)
+.++++++++++... ++ ..| +++.+++++|+++++|||+++.++++|++..+++.++
T Consensus 84 ~~~~~~~~~~~~~~~------------~~~~~~~~--------~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~ 143 (380)
T PF00999_consen 84 LVGFLLPFILVGFLL------------SFFLFILG--------LSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGR 143 (380)
T ss_dssp --------------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHH
T ss_pred cceeeehhhHHHHHH------------HHhhccch--------hhhHHHhhhHHhhhcccccchhhhhhhhhcccccccc
Confidence 999999887633331 21 344 6899999999999999999999999888888999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHH
Q 003861 274 ATLGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA--RSSEAFVALC 350 (791)
Q Consensus 274 l~l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~--~~~e~~~~~~ 350 (791)
++.+++.+||+++++++.+....... ...+.+... ..++.. .+..++.++..+++.++..+. +.++.....+
T Consensus 144 ~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (380)
T PF00999_consen 144 LLLSESVINDIIAIILLSILISLAQASGQSSLGQLL-LSFLWI----ILIGIVIGLLFGWLLRRLIRRASPSSEIFILLV 218 (380)
T ss_dssp HHTTTTTTTTTTTTTTT---------------------------------------------------------------
T ss_pred hhhhhchhhccchhhhhhhhhhhhcccccccccchh-cchhhh----hhhheeeecccchHHHHhhhhccccchhhHHHH
Confidence 99999999999999888776555421 112222211 112222 222233334445555555444 4566677777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchH-hHHHHHHHHHHcccCChHHHH---hhhHHHHHH
Q 003861 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDIELLF---REWPNVLAL 426 (791)
Q Consensus 351 l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~-~~f~~lFFv~vG~~l~l~~l~---~~~~~~l~l 426 (791)
+++++..++++|.+|.|+.+|+|++|+++++.+.++++++++++++ +++.|+||+.+|+++|++.+. ..|...+.+
T Consensus 219 l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~ 298 (380)
T PF00999_consen 219 LALILLLYGLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLL 298 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHH
Confidence 8888888999999999999999999999998888888999999997 999999999999999998883 456656666
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 503 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~ 503 (791)
.+..+++|.+++++..+..|.++|++..+|+.+.+||+++++++..+.+.|.++++.++.++.++++|++++|+..+
T Consensus 299 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 299 LIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 66677999999999999999999999999999999999999999999999999999999999999999998877654
|
These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A. |
| >COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=285.12 Aligned_cols=363 Identities=20% Similarity=0.188 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC----cCCchhHHHHHHHHHHHHHHHHhhcCChHHH
Q 003861 110 INDLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI----IRNLTDVKVLSEWGILFLLFEMGLELSLARL 185 (791)
Q Consensus 110 i~~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl----i~~~~~l~~l~elgl~~lLF~~Gleldl~~L 185 (791)
++.+++...+++..+.+...++.|++.|..+.++..|++.|.-|+ +++.+.-..++++++++++|..|+..+++.+
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~ 84 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSF 84 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence 344556666778889999999999999999999999999998553 3466778899999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC
Q 003861 186 KALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG 265 (791)
Q Consensus 186 k~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~ 265 (791)
|...++++.+++.++++|..+++.+ ++|+++ .+|.+++++|+++..|+.+.|..+|.+++
T Consensus 85 r~a~~palsLATlGVl~Ts~Ltg~a------------A~~ll~--------l~wle~~LiGAiVgSTDAAAVF~lL~~~n 144 (574)
T COG3263 85 RVAAGPALSLATLGVLITSGLTGVA------------AAYLLN--------LDWLEGLLIGAIVGSTDAAAVFSLLGGKN 144 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH------------HHHHhc--------cHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence 9999999999999999999887765 478998 89999999999999999999999998888
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHHHHHH-HHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 003861 266 ELPTRFGSATLGILLLQDIAVVPLLVIL-PVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSE 344 (791)
Q Consensus 266 ~~~~~~g~l~l~~~~l~Di~~v~~l~i~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e 344 (791)
++.+.+.++.-++.-||.+++++...+ ...+.+ ..+..+.++..+++..+..+++++.++++..++.+++ ...+.
T Consensus 145 -l~erv~stLEiESGtNDPmAvfLTitlieli~~g-et~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~--nLd~G 220 (574)
T COG3263 145 -LNERVASTLEIESGSNDPMAVFLTITLIELIAGG-ETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRI--NLDSG 220 (574)
T ss_pred -hhhhhhhhEEeecCCCCceeeehhHHHHHHHhcc-ccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh--ccccc
Confidence 588899999989999999997766544 444433 2224344445577888888788888888888888877 33466
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhh-hH
Q 003861 345 AFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WP 421 (791)
Q Consensus 345 ~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~-~~ 421 (791)
++..+++...+..+.+++.+|.|+.++.+++|++++|. +.+|.+.+..+.+.++...++|...|+..+++++... .+
T Consensus 221 L~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavP 300 (574)
T COG3263 221 LYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIP 300 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHH
Confidence 77888888888888999999999999999999999998 5678999999999999999999999999999999774 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhh-HHHHHHHHHHHh
Q 003861 422 NVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNK-LLIIVVVLSMAL 497 (791)
Q Consensus 422 ~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~-~iv~~vvlt~il 497 (791)
.++..+..++++|++++++...-+++++||..+++|. +-||.+++++|.+.+..|.-+.+++- +..+++++|.++
T Consensus 301 ailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 301 AILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred HHHHHHHHHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 3333444566889999998888889999999999995 99999999999999999988877664 444445555554
|
|
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=294.07 Aligned_cols=341 Identities=14% Similarity=0.086 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCCc------hhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003861 116 DTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRNL------TDVKVLSEWGILFLLFEMGLELSLARLKA 187 (791)
Q Consensus 116 ~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~~------~~l~~l~elgl~~lLF~~Gleldl~~Lk~ 187 (791)
..+++++++++..++.+|+.+|..+.++++|+++||. +++++. .....++++++++++|.+|++++.+.+|+
T Consensus 18 lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr 97 (810)
T TIGR00844 18 VGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLK 97 (810)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445566777777777899999999999999999995 545422 22233999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHh-hcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHh---
Q 003861 188 LAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFL-FHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE--- 263 (791)
Q Consensus 188 ~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l-~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e--- 263 (791)
.|+.++.+++.++.++++++++++ +++ +| ++|..|+++|+++++|+|+.+..+++.
T Consensus 98 ~wrsV~rLl~~~M~lT~livAL~a------------~~Li~G--------L~~~~ALLLGAILAPTDPVLAssV~kg~~~ 157 (810)
T TIGR00844 98 HWVSVTMLLVPVMTSGWLVIALFV------------WILVPG--------LNFPASLLMGACITATDPVLAQSVVSGTFA 157 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------------HHHHcC--------CCHHHHHHHHhhhcCCcHHHHHHHHhcccc
Confidence 999999999999999998877652 344 46 799999999999999999999999883
Q ss_pred cCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhh--ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003861 264 KGELPTRFGSATLGILLLQDIAVVPLLVILPVLES--QVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA 340 (791)
Q Consensus 264 ~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~--~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~ 340 (791)
.+ ++.+...++.+++.+||.++++++.+...+.. +... .....++..++..+++.++++++.+|+..++.++..+.
T Consensus 158 ~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr 236 (810)
T TIGR00844 158 QK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGK 236 (810)
T ss_pred cc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 56788999999999999999887765433322 1111 11111223444444444555555567888888877543
Q ss_pred c--cchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccc-hhH--HHHhhhchHhHHHHHHHHHHcccCChHH
Q 003861 341 R--SSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF-RTQ--IEADIRPFRGLLLGLFFVTTGSSIDIEL 415 (791)
Q Consensus 341 ~--~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~-~~~--i~~~l~~~~~~f~~lFFv~vG~~l~l~~ 415 (791)
. ..+.+..+.+++++.++.+++.+|.|+++++|+||+++++... .++ .....+.+..++..++|+++|+.+.+..
T Consensus 237 ~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~ 316 (810)
T TIGR00844 237 NIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKD 316 (810)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhh
Confidence 3 4455666666677777888999999999999999999998632 221 1112222345888999999999998877
Q ss_pred HHh------hhHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCC
Q 003861 416 LFR------EWPNVLALLAGLIIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGV 478 (791)
Q Consensus 416 l~~------~~~~~l~l~l~~ll~K~l~~~~~~~~--~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~ 478 (791)
+.. .|..+++.++++++.|++++++...+ ...+|+|++++||+ ++||..++.++.++.+.+.
T Consensus 317 l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 317 FNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHHHHHHHHHhhh
Confidence 643 24444444455567787777665333 34789999999995 9999999999999987764
|
This model is specific for the fungal members of this family. |
| >KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=298.24 Aligned_cols=384 Identities=23% Similarity=0.332 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc--cCCc----------CCchhHHHHHHHHHHHHHHHHhhc
Q 003861 112 DLGLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQ--LGII----------RNLTDVKVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 112 ~l~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp--~gli----------~~~~~l~~l~elgl~~lLF~~Gle 179 (791)
-+++++.+++++..++..++|++|+|.++.++++||++|| +|-. .....++.++.+|..+++|..|+|
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~ 102 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888899999999999999999999999999999999 3432 123678999999999999999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccc--cCCHHHHHHHHHHhhhccHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVN--IRSIDEAVVIGAALSLSSSAFV 257 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~--~~~~~~alllga~ls~TS~avv 257 (791)
+|.+.+|+..|++..+++.++++++.....+.. ...+...+... .....+-..++.+.+.||.+++
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~ 170 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAF------------LLSDTKADKEDGALFLPFEILFILSAQSITSFPVL 170 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHhhhhhhh------------hccccccccccccccccHHHHHHHHHhhcchhHHH
Confidence 999999999999999999999998765443321 11111111000 0112255778899999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 258 LQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVV 337 (791)
Q Consensus 258 ~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i 337 (791)
..+|.|+++.+++.|+++++.++++|++++.++.+...+.+....+.... .+.+...+++ .++.-++.++++.|+
T Consensus 171 ~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 171 ARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRS-VWDLVLVIGF----VLFLFFVVRPLMKWI 245 (769)
T ss_pred HHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHH-HHHHHHHHHH----HHheeeehhhhHHHH
Confidence 99999999999999999999999999999988877666654432211111 1122222222 233345667788887
Q ss_pred Hhhc-----cchHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHhHhcCCc-cchhHHHHhhhch-HhHHHHHHHHHHcc
Q 003861 338 AEAR-----SSEAFVALCLLTVAGTSLLTQKLG-FSDTLGAFLAGAILAET-NFRTQIEADIRPF-RGLLLGLFFVTTGS 409 (791)
Q Consensus 338 ~~~~-----~~e~~~~~~l~~~~~~~~la~~lG-ls~~LgAflaGl~l~~~-~~~~~i~~~l~~~-~~~f~~lFFv~vG~ 409 (791)
.+.. ..+.+....+..++.++.+++.++ +++.+|||+.|+++++. |.+..+.++++.+ .++|+|+||+..|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7653 234556666677777888888888 88899999999999986 7889999999998 69999999999999
Q ss_pred cCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHH
Q 003861 410 SIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLII 489 (791)
Q Consensus 410 ~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~ 489 (791)
+.|+..+.. |......+.....+|++++...+.++|+|+|+++.+|..|+.+|.+++++...+.+.+.++.+.|.++++
T Consensus 326 k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl 404 (769)
T KOG1650|consen 326 KTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVL 404 (769)
T ss_pred ceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHH
Confidence 999999877 6666667777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhHhHHHHHHHHHHhhhh
Q 003861 490 VVVLSM-ALTPLLNEIGRWAADFID 513 (791)
Q Consensus 490 ~vvlt~-iltpll~~l~~~l~~~l~ 513 (791)
++++++ +.+|++...+++..++..
T Consensus 405 ~alv~t~I~~~~l~~~y~p~~~~~~ 429 (769)
T KOG1650|consen 405 MALVSTFITPPLLMFLYDPTRKYHG 429 (769)
T ss_pred HHHHHHhhHHHHHHHhcchhhhcCc
Confidence 887755 556888878877665544
|
|
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=268.78 Aligned_cols=326 Identities=17% Similarity=0.185 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccCC---cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 119 TFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLGI---IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 119 llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~gl---i~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
.+++++.....+++|+|+|.+++++++|+++||.+. ++.++ +.+..+++.+++|.+|+++|++.+|++++.++.+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~l 82 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALI 82 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455566677789999999999999999999998432 22222 3345589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHH
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSAT 275 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~ 275 (791)
++.++++|+++++.+ .+++++ ++|..|+++|+++++|||+++.+++++.+ .+++..+++
T Consensus 83 a~~~vlit~~~v~~~------------~~~~~~--------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il 141 (525)
T TIGR00831 83 AFLLVVVTTVVVGFS------------LNWILG--------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILL 141 (525)
T ss_pred HHHHHHHHHHHHHHH------------HHHHhc--------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHH
Confidence 999999998876654 234566 79999999999999999999999999987 577889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 003861 276 LGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTV 354 (791)
Q Consensus 276 l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~ 354 (791)
.+++++||..+++++.+...+..+ +..+.+... ..+....++.++++++..|+..++.++. .+.+.....++++++
T Consensus 142 ~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~-~~f~~~~~~gi~vG~~~g~~~~~l~~~~--~~~~~~~~~l~l~~~ 218 (525)
T TIGR00831 142 EGESLLNDGAALVVFAIAVAVALGKGVFDPLNAA-LDFAVVCVGGIAAGLAVGYLAYRLLRAK--IDDPLVEIALTILAP 218 (525)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 999999999999988877655442 222333222 2222332333333333345555555442 223334456677788
Q ss_pred HHHHHHHHHhCChHHHHHHHHhHhcCCccc----hhHH----HHhhhchHhHHHHHHHHHHcccCChHHHHhhh------
Q 003861 355 AGTSLLTQKLGFSDTLGAFLAGAILAETNF----RTQI----EADIRPFRGLLLGLFFVTTGSSIDIELLFREW------ 420 (791)
Q Consensus 355 ~~~~~la~~lGls~~LgAflaGl~l~~~~~----~~~i----~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~------ 420 (791)
+.+++++|.+|.|+++|+|++|+++++... +++. .+..+.+..++.+++|+++|++++.. +.+.|
T Consensus 219 ~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~ 297 (525)
T TIGR00831 219 FAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVA 297 (525)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhh
Confidence 888999999999999999999999998521 2222 33344445688899999999998642 21111
Q ss_pred HH--H-------HHHHHHHHHHHHHHHHHhh--h-----hcCCCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 421 PN--V-------LALLAGLIIIKTLIISAIG--P-----RVGLTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 421 ~~--~-------l~l~l~~ll~K~l~~~~~~--~-----~~~~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
+. . +.+....+.+|++.++... + ..+.+||+.+.++|. ++||.++++++..
T Consensus 298 ~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al~ 364 (525)
T TIGR00831 298 PAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALALS 364 (525)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHHH
Confidence 10 1 1111122344543322211 0 124689999999996 9999999988764
|
This model is specific for the bacterial members of this family. |
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=253.13 Aligned_cols=339 Identities=22% Similarity=0.224 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccC--CcCC--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASPILGFFFAGIVLNQLG--IIRN--LTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~ivg~ilaGillGp~g--li~~--~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
.+...+++..+...+.+.+|++.|.++.+++.|++.||.+ +.+. ...-+.+..+++..++|..|+++|.+++|+++
T Consensus 8 ~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~ 87 (429)
T COG0025 8 LFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVW 87 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhH
Confidence 4556667788889999999999999999999999999843 3332 22344555999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCC
Q 003861 190 KFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPT 269 (791)
Q Consensus 190 ~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~ 269 (791)
+.+..+++..+++|++..+.+ .+++++ .+++..|+++|+++++|||+++.+++++.+ .++
T Consensus 88 ~~I~~La~~~v~it~~~~g~~------------~~~l~~-------~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ 147 (429)
T COG0025 88 RSILVLALPLVLITALGIGLL------------AHWLLP-------GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPK 147 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHhC-------ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCH
Confidence 999999999999999877765 344443 178999999999999999999999999977 688
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHH
Q 003861 270 RFGSATLGILLLQDIAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAF 346 (791)
Q Consensus 270 ~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~--~~e~~ 346 (791)
+..+++.+++++||..+++++.+...+..+ +..+..+.. ..++..+.+..+++++.+++..++.+++.+.. +....
T Consensus 148 ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~-~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~ 226 (429)
T COG0025 148 RIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWAL-LLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLE 226 (429)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHH
Confidence 999999999999999999998877655443 222323333 33444444444445555677788888876532 34445
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc----c----chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh
Q 003861 347 VALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET----N----FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR 418 (791)
Q Consensus 347 ~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~----~----~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~ 418 (791)
..+.+...++.+.+++.+|.|+.++++++|++.++. . .+.+..+..+.+.-++..+.|+.+|++++...+..
T Consensus 227 ~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~ 306 (429)
T COG0025 227 TLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA 306 (429)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 677788888899999999999999999999988521 1 12333334444556899999999999999998865
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHhhhhc------CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 419 E-WPNVLALLAGLIIIKTLIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 419 ~-~~~~l~l~l~~ll~K~l~~~~~~~~~------~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
. ++.++..+...+++|++.++...... ..+++++.+++|. ++||.++++++....
T Consensus 307 ~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p 368 (429)
T COG0025 307 LGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIP 368 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHch
Confidence 4 56666777788899999998887763 3799999999996 999999999988764
|
|
| >TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=240.92 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=227.9
Q ss_pred HHc-CCChHHHHHHHHHhhccc--CC--cCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 132 KIA-RASPILGFFFAGIVLNQL--GI--IRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 132 ~rl-~lP~ivg~ilaGillGp~--gl--i~~~-~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
++. ++|..+..++.|+++|+. +. .+.. -.-+.+-.+.+..++|++|++++.+.++++.+.++.+++++++++++
T Consensus 30 ~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~ 109 (559)
T TIGR00840 30 KVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAF 109 (559)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 599999999999999973 21 2111 12345566789999999999999999999999999999999999998
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHH
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 285 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~ 285 (791)
+++...+.. ..+.+... ..++|..|+++|+++|+|||+++.+++++.+ .+.+.-.++.+++++||..
T Consensus 110 ~ig~~l~~~---------~~~~~~~~---~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDav 176 (559)
T TIGR00840 110 VIGLSLYGI---------CLIGGFGS---IDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAV 176 (559)
T ss_pred HHHHHHHHH---------Hhhccccc---cCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccH
Confidence 877653310 00111000 1158999999999999999999999999998 5778999999999999999
Q ss_pred HHHHHHHHHHHhhcc-Cc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 003861 286 VVPLLVILPVLESQV-SE-SV---WPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLL 360 (791)
Q Consensus 286 ~v~~l~i~~~l~~~~-~~-~~---~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~l 360 (791)
+++++.++..+...+ +. +. .......+...+++++ ++++.+++..++.++.... +.....++++++++.+.+
T Consensus 177 aIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGil-iG~v~G~l~~~l~r~~~~~--~~~e~~l~l~~~yl~Y~l 253 (559)
T TIGR00840 177 TVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLL-VGVVFGFLVAFITRFTHHI--RQIEPLFVFLISYLSYLF 253 (559)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHH
Confidence 999987766554311 11 11 1111112223334333 3333446666666665332 234455667777888889
Q ss_pred HHHhCChHHHHHHHHhHhcCCc---cchhH----HHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHH
Q 003861 361 TQKLGFSDTLGAFLAGAILAET---NFRTQ----IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 433 (791)
Q Consensus 361 a~~lGls~~LgAflaGl~l~~~---~~~~~----i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~ 433 (791)
+|.+|.|++++++++|+++++. +.+++ +....+.+..+...+.|+++|+.+........|..++..++..+++
T Consensus 254 AE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 254 AETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIY 333 (559)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999753 22222 3344445556888999999999753221111344444444556788
Q ss_pred HHHHHHHhhhh------cCCCHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003861 434 KTLIISAIGPR------VGLTLQESVRIGLLLSQGGEFAFVVFSLA 473 (791)
Q Consensus 434 K~l~~~~~~~~------~~~~~r~~~~~g~~l~~rG~~~lvla~~a 473 (791)
|++.++...+. .+.++++.++++|+ ++||.++++++...
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l 378 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhC
Confidence 99888765532 35799999999995 99999999988654
|
This model is specific for the eukaryotic members members of this family. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-25 Score=225.88 Aligned_cols=207 Identities=20% Similarity=0.195 Sum_probs=166.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH--hcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR--KLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~--~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++|+|+|++|..+|+.|. ++|++|++||.|++++++.. +.+.+++.||++|+++|++||+++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~----------~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS----------EEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHH----------hCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 5899999999999999998 89999999999999999954 48999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~ 690 (791)
++|++|+.|+.+|+.+++.+...++|||+++++|.+.+++.|+|.+++|+.+++.++++.+.. |+..+++.
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~-----p~~~~~~~---- 142 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVT-----PGALDVLE---- 142 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcC-----CChheEEe----
Confidence 999999999999999999765567999999999999999999999999999999999999887 77766653
Q ss_pred cc-cccceeeeecCCC-chhhcccccCCcchhhhhhccCCC-CCCCCccc-cccCCCCCCCCCCCCceeeeeccCCCC
Q 003861 691 NS-MEIQAQEVLSQKD-DQEFDIMKPLQVRVADIVEAEKTI-PSTSNDDK-LSREDNTDTAGEDAKGVLYCELNGTNN 764 (791)
Q Consensus 691 ~~-~~~~~~e~~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~-~~~~p~~~~~~~~gd~~l~~~~~~~~~ 764 (791)
.. ++..+.+..+..+ ...++++++++.|. |.+. .-..-+++ ....|.+++.+++||++..++...+-+
T Consensus 143 ~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~------~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~~~~i~ 214 (225)
T COG0569 143 LAGGDAEVIEEKVAEDSPLAGKTLRELDLRL------PYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGAPEALR 214 (225)
T ss_pred ecCCcceEEEEEecCCCccCCcCHHHhcccC------CCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEcHHHHH
Confidence 22 1333334333332 44566666655211 1111 00111222 678899999999999999998776544
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=223.01 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=123.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++|++|||+|++|+.++++|+ ++|.++++||.|+ .++..+++.++++||++|+++|++||+++|+++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~----------~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLR----------QRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEE
Confidence 4789999999999999999998 7899999999873 456666789999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+++++||++|+.+++++|+++|+++++|+++|+++.++++++|+|.|++|+..+|+++++.+..
T Consensus 307 I~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 307 LALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred EEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999987754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=182.91 Aligned_cols=116 Identities=36% Similarity=0.532 Sum_probs=110.1
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
|+|||+|++|+.+++.|. +.+++|+++|.|++.++.+++.++++++||++|+++|+++|+++|+.+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~----------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK----------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-SHHHHHHHHHHH----------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCCHHHHHHHHHHH----------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 689999999999999998 6777999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcC
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILE 659 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p 659 (791)
++|+.|+.+++.+|+++|+.+++++++++++.+.|+++|+|.||+|
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9999999999999999999999999999999999999999999987
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-20 Score=211.06 Aligned_cols=203 Identities=20% Similarity=0.210 Sum_probs=165.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++|++|||+|++|+.+++.|. +.|++|++||.|+++++++++. +..+++||++++++|+++++++|+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~----------~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLE----------KEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCC
Confidence 3689999999999999999998 7899999999999999998874 688999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 687 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~ 687 (791)
++++++++|+.|+.+++.+|+.++. +++++++++++.+.++++|+|.|+.|+..++..+++.+.. ++..+.. .
T Consensus 300 ~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~-----~~~~~~~-~ 372 (453)
T PRK09496 300 AFIALTNDDEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRR-----GDIVAVH-S 372 (453)
T ss_pred EEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhc-----cchhhhh-h
Confidence 9999999999999999999999765 8999999999999999999999999999999999988877 4443322 1
Q ss_pred HHhcccccceeeeecCCCc-hhhcccccCCcc----hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCC
Q 003861 688 LVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVR----VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGT 762 (791)
Q Consensus 688 ~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~i~----~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~ 762 (791)
+ ..++..+.|+.+..+. ..++++++++.+ +..+.| +++. ..|++++.+++||++.+++.+..
T Consensus 373 ~--~~~~~~~~~~~v~~~s~~~g~~l~el~l~~~~~i~~i~r----------~~~~-~~p~~~~~l~~gD~l~v~~~~~~ 439 (453)
T PRK09496 373 L--RRGAAEAIEAVAHETSKVVGKPLKDLKLPKGVLIGAIVR----------GGEV-IIPTGDTVIEPGDHVIVFVLDKK 439 (453)
T ss_pred h--cCCcEEEEEEEeCCCChhccCCHHHcCCCCCCEEEEEEE----------CCEE-EcCCCCcEECCCCEEEEEEcCcc
Confidence 1 2234566676665332 244555544322 222222 3444 67999999999999999998776
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=198.26 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=161.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++ .+.++++||++++++|++++++++|.+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~----------~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLS----------GENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 7999999999999999998 889999999999999999886 78999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHH--HHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDL--KKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 686 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~---~~~L--~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~ 686 (791)
++++|+.|..++..+|+++|+.++|+++++.++ .+.+ +++|+|.|+.|+..+|..+++.+.. |...+.+.
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~-----~~~~~~~~ 146 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEY-----PGALDVEE 146 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcC-----CCceEeee
Confidence 999999999999999999999999999988877 3444 7899999999999999999987765 43332221
Q ss_pred HHHhcccccceeeeecCCCc-hhhcccccCC-------cchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeee
Q 003861 687 QLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQ-------VRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCE 758 (791)
Q Consensus 687 ~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~-------i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~ 758 (791)
+ .+.+..+.|+.++.+. ..+++++++. +++..+.| +++ ...|++++++++||++.++|
T Consensus 147 --~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r----------~~~-~~~p~~~~~l~~gD~l~v~g 212 (453)
T PRK09496 147 --F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR----------GGR-LIIPRGDTVIEAGDEVYFIG 212 (453)
T ss_pred --e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE----------CCE-EEcCCCCcEecCCCEEEEEe
Confidence 1 1234667777665432 2333333332 22222322 233 34699999999999999999
Q ss_pred ccCCCC
Q 003861 759 LNGTNN 764 (791)
Q Consensus 759 ~~~~~~ 764 (791)
.+..-+
T Consensus 213 ~~~~l~ 218 (453)
T PRK09496 213 AREHIR 218 (453)
T ss_pred CHHHHH
Confidence 877544
|
|
| >KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=175.49 Aligned_cols=343 Identities=15% Similarity=0.156 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHhhccc------CCcC---CchhH--HHHHHHHHHHHHHHHhhc
Q 003861 114 GLDTLTFLAVTVIVVPVFKIAR---ASPILGFFFAGIVLNQL------GIIR---NLTDV--KVLSEWGILFLLFEMGLE 179 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~---lP~ivg~ilaGillGp~------gli~---~~~~l--~~l~elgl~~lLF~~Gle 179 (791)
++..+++|+++.+.++++++-| +|.-+.-++.|+++|-. +..+ ....+ +.+-.+-+.-+.|..|.+
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 3444567888999999999988 99999999999999951 2222 11111 245566778899999999
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHH
Q 003861 180 LSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQ 259 (791)
Q Consensus 180 ldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~ 259 (791)
++.+.++++...+...+..++.+++.++++.+ ++++. ......++|.+++.+|+++|+|+|..++.
T Consensus 117 l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv-------------~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLa 182 (575)
T KOG1965|consen 117 LKKKQFFRNIGSILLFAIFGTFISAVIIGAGV-------------YLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLA 182 (575)
T ss_pred echhhhhhhhHHHHHhhhcceeeehhHHhhHH-------------HHHhc-ccccccccHHHHHHHhhHhcccCchHHHH
Confidence 99999999999999999999888876655432 23322 12223479999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 260 LLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPM--LVKESLKALAGLGLLSLGGKYLLRRVFEVV 337 (791)
Q Consensus 260 lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i 337 (791)
++++.+ .+...-.++.|++++||..+++++..+..+..... +.|.. .+..++....+-..+++..+++.-.+++.+
T Consensus 183 Ifnel~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~-~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~ 260 (575)
T KOG1965|consen 183 IFNELG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSL-NDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFL 260 (575)
T ss_pred HHHHhC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 45566678899999999999999988766654322 22222 122222222222222222233333333433
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc---cchh----HHHHhhhchHhHHHHHHHHHHccc
Q 003861 338 AEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET---NFRT----QIEADIRPFRGLLLGLFFVTTGSS 410 (791)
Q Consensus 338 ~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~---~~~~----~i~~~l~~~~~~f~~lFFv~vG~~ 410 (791)
.-.+.......+.+++....++++|.+|+|++++.+..|++++.. +.+. .....++.+.-+...+-|+++|+.
T Consensus 261 ~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~ 340 (575)
T KOG1965|consen 261 YLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS 340 (575)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 323444455566677788888999999999999999999999974 2222 222333444556677889999963
Q ss_pred -CChHHHHhh-hHHHHHHHHHHHHHHHHHHHHhhhhc------C----CCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 411 -IDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV------G----LTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 411 -l~l~~l~~~-~~~~l~l~l~~ll~K~l~~~~~~~~~------~----~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
++.....-. ...+....++++++|..-++-..... + .+.++-..+.|.=.-||.+++.++.-
T Consensus 341 ~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 341 AFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred HhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 344333222 12334445556677876665444332 2 44555666666544899999888664
|
|
| >KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-15 Score=154.83 Aligned_cols=329 Identities=16% Similarity=0.161 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhccc--CCcCC------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQL--GIIRN------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~--gli~~------~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
++...-.+-+++-+...+.--+.|+++||. +++++ +-....++.+-+..-.|..++|+.-....++++.++.
T Consensus 25 F~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~v 104 (467)
T KOG4505|consen 25 FGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFV 104 (467)
T ss_pred HHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333444566565555566889999993 44432 2345678999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC---CCCChh
Q 003861 195 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG---ELPTRF 271 (791)
Q Consensus 195 la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~---~~~~~~ 271 (791)
+-+.-++..++..+.+. +.++ +..+..+++++++.+++|+|.....++.+.+ +.+.+.
T Consensus 105 lllpVmi~gwlvs~~fv------------y~l~-------p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeri 165 (467)
T KOG4505|consen 105 LLLPVMIIGWLVSFGFV------------YALI-------PNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERI 165 (467)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHh-------ccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHH
Confidence 87777777666655442 2222 1278999999999999999999999988654 355677
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-hhc-c--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchH
Q 003861 272 GSATLGILLLQDIAVVPLLVILPVL-ESQ-V--SESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEA 345 (791)
Q Consensus 272 g~l~l~~~~l~Di~~v~~l~i~~~l-~~~-~--~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~--~~e~ 345 (791)
..++.+++..||.++++++-+..-+ ... . ..-.|. ...++.-+.+..+++.+.+|+.+..++...+.+ .+|.
T Consensus 166 R~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eS 243 (467)
T KOG4505|consen 166 RNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRES 243 (467)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 8888999999999999887654332 111 1 111222 223444455555555566688888777765543 6788
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-cchhHHH-HhhhchH-hHHHHHHHHHHcccCChHHHHh----
Q 003861 346 FVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-NFRTQIE-ADIRPFR-GLLLGLFFVTTGSSIDIELLFR---- 418 (791)
Q Consensus 346 ~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-~~~~~i~-~~l~~~~-~~f~~lFFv~vG~~l~l~~l~~---- 418 (791)
+..+-+.+.+.+..+.+.+|.+..+-.|.||.+++-. -++++.+ .....+. -++.-.||++.|..++++++..
T Consensus 244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g 323 (467)
T KOG4505|consen 244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence 8888788888888999999999999999999999964 2333332 2344443 3677899999999999999853
Q ss_pred --hhHHHHHHHHHHHHHHH-HHHHHhhhhc--CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 419 --EWPNVLALLAGLIIIKT-LIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 419 --~~~~~l~l~l~~ll~K~-l~~~~~~~~~--~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
.|-.++ +.+..++.|. .++++.-+.. =.+|||++++|+. +|.|.-++..+..+-
T Consensus 324 l~vwrlvi-lsi~iif~RRip~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar 382 (467)
T KOG4505|consen 324 LPVWRLVI-LSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLAR 382 (467)
T ss_pred chHHHHHH-HHHHHHHhcccceEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHH
Confidence 133333 3334444544 4444433332 2589999999995 999998888887764
|
|
| >PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-12 Score=143.91 Aligned_cols=267 Identities=23% Similarity=0.294 Sum_probs=173.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCC-------hHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELS-------LARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleld-------l~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~ 231 (791)
...+.+.+--..++.|.+|+|++ ++..|+..-+ ..-++.+++++.+... .++..
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPaliy~-----------------~~n~~- 121 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALIYV-----------------AVNLA- 121 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHHHH-----------------HHhCC-
Confidence 45567778888899999999994 4444433332 4567777777765433 33310
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
-..+.-=-++-+.||.+..+.++...|. .++..+..+++.+++||+.++++++++. + ++.+..+ +
T Consensus 122 -------~~~~~~GW~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t-~~i~~~~-L-- 187 (423)
T PRK14853 122 -------GGGALRGWAIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---T-SELNLEA-L-- 187 (423)
T ss_pred -------chhhhhhhhhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---C-CCCCHHH-H--
Confidence 0111111134466999999999999775 4778889999999999999999888754 1 1222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--------
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-------- 382 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-------- 382 (791)
...++.++++ +++. +.+.++....+.+ .+...+..+..|+|+.+|+|++|++++..
T Consensus 188 --~~a~~~~~~l-----~~l~-------~~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~ 251 (423)
T PRK14853 188 --LLALVPLALF-----WLLV-------QKRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGP 251 (423)
T ss_pred --HHHHHHHHHH-----HHHH-------HcCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccc
Confidence 1111111111 2221 1122223332222 33556689999999999999999999842
Q ss_pred ----cchhHHHHhhhch-HhHHHHHH-HHHHcccCCh-HHHHhhh--HHHHHHHHHHHHHHHHHHHHhhhhc--------
Q 003861 383 ----NFRTQIEADIRPF-RGLLLGLF-FVTTGSSIDI-ELLFREW--PNVLALLAGLIIIKTLIISAIGPRV-------- 445 (791)
Q Consensus 383 ----~~~~~i~~~l~~~-~~~f~~lF-Fv~vG~~l~l-~~l~~~~--~~~l~l~l~~ll~K~l~~~~~~~~~-------- 445 (791)
+..++++++++++ ..+++|+| |+..|.++|. +.+.+.+ +..+.+++..+++|+++++..++..
T Consensus 252 ~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~l 331 (423)
T PRK14853 252 EAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASL 331 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCC
Confidence 1136788899998 47999999 9999999986 4342222 3556677888999999987766542
Q ss_pred --CCCHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003861 446 --GLTLQESVRIGLLLSQGGEFAFVVFSLAN 474 (791)
Q Consensus 446 --~~~~r~~~~~g~~l~~rG~~~lvla~~a~ 474 (791)
+.+|++-.-+|+.-+-.=.+++.++..+.
T Consensus 332 P~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf 362 (423)
T PRK14853 332 DDDLTWIDVFGVALLAGIGFTVSLLIGELAF 362 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56888888887743333356777777777
|
|
| >COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=137.59 Aligned_cols=141 Identities=34% Similarity=0.490 Sum_probs=134.0
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
...+|+++||+|++|+.+++.|. ..+.+++++|.|++.++.++..++.+++||++++++|+++|+++|+.
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~----------~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~ 88 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALL----------ASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARA 88 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeE
Confidence 47889999999999999999998 78889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC-hhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCCh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~-~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~ 679 (791)
+++++.++..|..++..++..+|+.++++++++ ..+.+.+...|+|.++.+....+..+++.++...+...
T Consensus 89 vi~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~ 160 (212)
T COG1226 89 VIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDS 160 (212)
T ss_pred EEEecCCHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCch
Confidence 999999999999999999999999999999999 88889999999999999999999999999998776555
|
|
| >TIGR00773 NhaA Na+/H+ antiporter NhaA | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-08 Score=110.04 Aligned_cols=267 Identities=19% Similarity=0.238 Sum_probs=160.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
...+.+.+.-..++.|.+|+|++.+-+.. .+| ....-++.+++++.+.. +.++.. +
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy-----------------~~~n~~~~ 113 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY-----------------LAFNANDP 113 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH-----------------hheecCCC
Confidence 45567778888889999999997665532 122 22445566666665543 333321 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
+...++... ..||.+....++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 114 ~~~~GW~IP---------~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t-~~i~~~~-L-- 177 (373)
T TIGR00773 114 ITREGWAIP---------AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---T-NDLSMAA-L-- 177 (373)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---C-CCCCHHH-H--
Confidence 111222222 34666666655554332 4555677888999999999998887642 1 1112211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----ch
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FR 385 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~ 385 (791)
......++ .-+++ ++ .+.++......+.+ ...+.....|+|+.+|+|++|++++..+ -.
T Consensus 178 --~~a~~~~~-----~l~~~----~~---~~v~~~~~y~~lgv--llW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl 241 (373)
T TIGR00773 178 --LVAAVAIA-----VLAVL----NR---CGVRRLGPYMLVGV--ILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPL 241 (373)
T ss_pred --HHHHHHHH-----HHHHH----HH---cCCchhhHHHHHHH--HHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHH
Confidence 11111111 11122 22 22333332222222 2233337999999999999999999741 13
Q ss_pred hHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHH
Q 003861 386 TQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQES 452 (791)
Q Consensus 386 ~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~ 452 (791)
+++++.+++.. .+++|+| |+..|.++|...+.. ..+..+.+++..+++|+++++..++.. +.+|++-
T Consensus 242 ~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~ 321 (373)
T TIGR00773 242 KRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQI 321 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 56777888874 6788999 999999998654432 234456677888899999998776542 5688888
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 453 VRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 453 ~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
.-.|+. +..| .+++.++..+..
T Consensus 322 ~gv~~L-~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 322 FAVGVL-CGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcC
Confidence 877774 4443 466667776763
|
These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized. |
| >PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-07 Score=103.63 Aligned_cols=266 Identities=19% Similarity=0.226 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+.-..++.|.+|+|++-+-+... +| ....-++.+++++.++ |+.++...+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI-----------------Y~~~n~~~~ 129 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI-----------------YFFLNADTP 129 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH-----------------HhheecCCC
Confidence 455677888888999999999976655321 22 2234455566666543 333432222
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++.. -..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 130 ~~~GWgI---------PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~~~~-L--- 192 (438)
T PRK14856 130 SQHGFGI---------PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---T-TNLKFAW-L--- 192 (438)
T ss_pred ccCcccc---------ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C-CCCcHHH-H---
Confidence 2222222 234677777666654442 3455667788999999999998887642 1 1112211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccc-------
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF------- 384 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~------- 384 (791)
+..++.++++ +++ ++. +.++.-.|.. +.+...+.....|+|+.++..+.|+++|-.+.
T Consensus 193 -~~a~~~~~~l-----~~l----n~~-~v~~~~~Y~~----~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~ 257 (438)
T PRK14856 193 -LGALGVVLVL-----AVL----NRL-NVRSLIPYLL----LGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVE 257 (438)
T ss_pred -HHHHHHHHHH-----HHH----HHc-CCccccHHHH----HHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhh
Confidence 1111111111 122 221 1112122222 22234456678999999999999999985311
Q ss_pred --------------------------------------hhHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHhhhHHHH
Q 003861 385 --------------------------------------RTQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFREWPNVL 424 (791)
Q Consensus 385 --------------------------------------~~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~~~~~~l 424 (791)
.+++++.++|.. .+.+|+| |...|..++.+.....-+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~l 337 (438)
T PRK14856 258 LLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLL 337 (438)
T ss_pred hhhhhhhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHH
Confidence 123445566663 4778888 888999887553322234556
Q ss_pred HHHHHHHHHHHHHHHHhhhhc----------CCCHHHHHHHHHHHhhhh-hHHHHHHHHHH
Q 003861 425 ALLAGLIIIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGG-EFAFVVFSLAN 474 (791)
Q Consensus 425 ~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~~~~g~~l~~rG-~~~lvla~~a~ 474 (791)
.+++.++++|+++++..++.. +.+|++-.-.|+. +..| .+++.++..++
T Consensus 338 GI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~L-aGIGFTmSLFIa~LAF 397 (438)
T PRK14856 338 GVILGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLL-AGIGFTMSMFISNLAF 397 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 677888999999998766542 5688888877774 4443 46666666666
|
|
| >KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=123.06 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHhhccc--CC--cCCchhHH--HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003861 136 ASPILGFFFAGIVLNQL--GI--IRNLTDVK--VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 209 (791)
Q Consensus 136 lP~ivg~ilaGillGp~--gl--i~~~~~l~--~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~ 209 (791)
+|.-..+|+.|+++|-. +. .. +..++ .+--.-+.-+.|++|.-+.-+.+..+...++..+.++.+..++..++
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~-~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~ 146 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIA-PFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGA 146 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccc-cccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHH
Confidence 68888899999999962 21 21 11111 22223455689999999999999999999999999999987766655
Q ss_pred hhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHH
Q 003861 210 FELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPL 289 (791)
Q Consensus 210 ~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~ 289 (791)
..| ++. ...+++.+ .+...-+++|.++|..+|..|+.+.+|.+ .|.-.=-++.|++++||...+++
T Consensus 147 sL~----~i~---~~glf~~~------~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlNDaVTVVL 212 (670)
T KOG1966|consen 147 SLY----AIS---LSGLFGMS------IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLNDAVTVVL 212 (670)
T ss_pred HHH----HHH---HhhhcCCC------chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhcCceEEeh
Confidence 433 111 12334411 35778899999999999999999999998 45555566779999999999888
Q ss_pred HHHHHHHhhccCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 003861 290 LVILPVLESQVSES-----VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 364 (791)
Q Consensus 290 l~i~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~l 364 (791)
.-++..+..-++.+ ...+....+.-.+++++ ++++.+++.....++-.+ .+-....+++++...++..+|.+
T Consensus 213 Y~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~l-vGivfafl~sl~tkft~~--vrviePvfif~~pYlaYL~aEm~ 289 (670)
T KOG1966|consen 213 YNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGAL-VGIVFAFLASLVTKFTKH--VRVLEPVFIFLLPYLAYLTAEMF 289 (670)
T ss_pred HHHHHHHHHhcccceeEeeeecceeEEEEEecCchh-HHHHHHHHHHHHHHhhcc--eeeecchhhhhHHHHHHHHHHHH
Confidence 77665443321111 11111111111122222 222233444333343322 22233466677888888899999
Q ss_pred CChHHHHHHHHhHhcCCc---cchhHHHH----hhhchHhHHHHHHHHHHcccCChHHHHhhh--HHHHHHHHHHHHHHH
Q 003861 365 GFSDTLGAFLAGAILAET---NFRTQIEA----DIRPFRGLLLGLFFVTTGSSIDIELLFREW--PNVLALLAGLIIIKT 435 (791)
Q Consensus 365 Gls~~LgAflaGl~l~~~---~~~~~i~~----~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~--~~~l~l~l~~ll~K~ 435 (791)
|+|+++|..+.|+.+... +..++... .+..+...-.++-|+.+|.+.-=+ ...| ..+.+-++..++.|.
T Consensus 290 hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 290 HLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHH
Confidence 999999999999999864 22333332 333344566778899999864222 2223 333333344457788
Q ss_pred HHHHHhhhhc------CCCHHHHHHHHHHHhhhhhHHHHHHH
Q 003861 436 LIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFS 471 (791)
Q Consensus 436 l~~~~~~~~~------~~~~r~~~~~g~~l~~rG~~~lvla~ 471 (791)
++++..+++. +++..+.+.++.+ +-||.+++.+..
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~ 408 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVV 408 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEE
Confidence 8876666542 5677888888876 889987776543
|
|
| >PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-06 Score=91.36 Aligned_cols=268 Identities=19% Similarity=0.199 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+.-..++.|.+|+|++-+-+.. .+| -...-++.+++++.+... .++..++
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~-----------------~~n~~~~ 117 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYL-----------------SINHDIK 117 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHH-----------------hhccCCc
Confidence 45567778888889999999997654422 122 224456666666655433 3332111
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++... ..||.+..+.++.=.|. .+....-.+++.+++||+.++++++++. + ++-+ +..+
T Consensus 118 ~~~GW~IP---------~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L--- 180 (383)
T PRK14854 118 VINGWAIP---------SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---T-KSLS-LLSL--- 180 (383)
T ss_pred ccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C-CCcc-HHHH---
Confidence 11222222 34666666665554332 4556667777889999999988887642 1 1112 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----chh
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRT 386 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~~ 386 (791)
....+.+.+ -+++ ++..+.++.-.|.. ..+...+.....|+|+.++..+.|++++..+ -.+
T Consensus 181 -~~A~~~~~~-----l~~~----nr~~~v~~~~~Y~~----~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~ 246 (383)
T PRK14854 181 -SLGTLFILA-----MIIC----NRIFKINRSSVYVV----LGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPAN 246 (383)
T ss_pred -HHHHHHHHH-----HHHH----HHhcCCceehHHHH----HHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHH
Confidence 111111111 1111 22111122222222 2223445667899999999999999999631 135
Q ss_pred HHHHhhhch-HhHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHHH
Q 003861 387 QIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESV 453 (791)
Q Consensus 387 ~i~~~l~~~-~~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~~ 453 (791)
++++.++|+ ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. +.+|++-.
T Consensus 247 rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~ 326 (383)
T PRK14854 247 FMEDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLY 326 (383)
T ss_pred HHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 678888888 45778888 888888883222221 124455677888899999988766542 56888888
Q ss_pred HHHHHHhhhh-hHHHHHHHHHHH
Q 003861 454 RIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 454 ~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
-.|+. +..| .+++.++..+.+
T Consensus 327 gv~~L-~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 327 GISLL-CGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHH-HHHHHHHHHHHHHhhCC
Confidence 87774 4443 466677777764
|
|
| >PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-06 Score=91.45 Aligned_cols=267 Identities=20% Similarity=0.251 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
+..+.+.+.-..++.|.+|+|++-+-+... +| -...-++.+++++.+.. +.++.. +
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy-----------------~~~n~~~~ 120 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY-----------------LLFNYADP 120 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH-----------------hheecCCC
Confidence 455667777888899999999987655321 22 22445566666665543 333321 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
....++... ..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++.+ +..+
T Consensus 121 ~~~~GWaIP---------~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L-- 184 (388)
T PRK09561 121 VTREGWAIP---------AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---T-SDLS-MVSL-- 184 (388)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C-CCcc-HHHH--
Confidence 111222222 34666666666654332 4555577888999999999998887642 1 1112 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc-----ch
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FR 385 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~-----~~ 385 (791)
......+++ -+++ ++ .+.+....... ..+...+.....|+|+.++..+.|+.++..+ -.
T Consensus 185 --~~a~~~~~~-----l~~l----n~---~~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl 248 (388)
T PRK09561 185 --GVAAVAIAV-----LAVL----NL---CGVRRTSVYIL--VGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPA 248 (388)
T ss_pred --HHHHHHHHH-----HHHH----HH---cCCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHH
Confidence 111111111 1122 21 12222222221 2223445667899999999999999999631 13
Q ss_pred hHHHHhhhchHh-HHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHHH
Q 003861 386 TQIEADIRPFRG-LLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQES 452 (791)
Q Consensus 386 ~~i~~~l~~~~~-~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~~ 452 (791)
+++++.++|... +.+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.+|++-
T Consensus 249 ~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l 328 (388)
T PRK09561 249 ERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQI 328 (388)
T ss_pred HHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 568888888854 588888 888888883222221 123455677788899999988766542 5688888
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 453 VRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 453 ~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
.-.|+. +..| .+++.++..+.+
T Consensus 329 ~gv~~L-~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 329 YAVGVL-CGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhcC
Confidence 877774 4443 456666666663
|
|
| >PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-06 Score=89.55 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=156.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccc-c
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKA----LAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 231 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~-~ 231 (791)
...+.+.+--..++.|.+|+|++-+-+.. .+| ....-++.+++++.+... .++.. +
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~-----------------~~n~g~~ 120 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA-----------------AFNYNNP 120 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh-----------------eeecCCC
Confidence 44566777788889999999997665432 122 224456666666655433 23211 1
Q ss_pred cccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHH
Q 003861 232 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 310 (791)
Q Consensus 232 ~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~ 310 (791)
....++... ..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++-+..+ +
T Consensus 121 ~~~~GWgIP---------mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t-~~i~~~~-L-- 184 (389)
T PRK09560 121 ETLRGWAIP---------AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---T-SDLSLPA-L-- 184 (389)
T ss_pred cccCccccc---------cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C-CCCCHHH-H--
Confidence 111122222 34666666666664332 4555577888999999999998887642 1 1122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCcc---c---
Q 003861 311 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN---F--- 384 (791)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~---~--- 384 (791)
....+.++++ +++ ++. +.+....... ..+...+.....|+|+.++..+.|++++..+ .
T Consensus 185 --~~a~~~~~~l-----~~l----n~~---~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~ 248 (389)
T PRK09560 185 --ALAAIAIAVL-----FLL----NRL---GVTKLTPYLI--VGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEES 248 (389)
T ss_pred --HHHHHHHHHH-----HHH----HHc---CCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCC
Confidence 1111111111 122 211 2222222211 2223445667889999999999999999631 1
Q ss_pred -hhHHHHhhhchHhH-HHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHH
Q 003861 385 -RTQIEADIRPFRGL-LLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQ 450 (791)
Q Consensus 385 -~~~i~~~l~~~~~~-f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r 450 (791)
.+++++.++|...+ .+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.+|+
T Consensus 249 pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~ 328 (389)
T PRK09560 249 PLHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWK 328 (389)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 25678888888554 48988 888888884322322 124456677888999999998766542 56888
Q ss_pred HHHHHHHHHhhhh-hHHHHHHHHHH
Q 003861 451 ESVRIGLLLSQGG-EFAFVVFSLAN 474 (791)
Q Consensus 451 ~~~~~g~~l~~rG-~~~lvla~~a~ 474 (791)
+-.-.|+. +..| .+++.++..+.
T Consensus 329 ~l~gv~~L-~GIGFTmSLFIa~LAF 352 (389)
T PRK09560 329 QIYGVSVL-CGIGFTMSLFIGSLAF 352 (389)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 88877774 4443 46666777776
|
|
| >PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-05 Score=87.93 Aligned_cols=264 Identities=17% Similarity=0.164 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHh----hh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARLKAL----AK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~Lk~~----~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
...+.+.+--..++.|.+|+|++-+-+... +| -...-++.+++++.++ |+.++...+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI-----------------y~~~n~~~~ 124 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL-----------------YTALNAGGP 124 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH-----------------HheeecCCC
Confidence 455667777788899999999986655321 22 2244555666666543 233332111
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++. +=..||.+..+.++.=.|. .+......+++.+++||+.++++++++. + ++.+..+ +
T Consensus 125 ~~~GWg---------IPmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~~~~-L--- 187 (423)
T PRK14855 125 GASGWG---------VPMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T-SGLNLLA-L--- 187 (423)
T ss_pred ccCccc---------cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C-CCCCHHH-H---
Confidence 111122 2244777777776665442 3445667788999999999988887642 1 1122221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-c-c-----
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-N-F----- 384 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-~-~----- 384 (791)
...+..++++ +++ ++. +.+.....+. +.+...+.....|+|+.++..+.|++++.. + .
T Consensus 188 -~~a~~~~~~l-----~~l----n~~---~v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~ 252 (423)
T PRK14855 188 -LLAALTWALA-----LLA----GRL---GVTSLKIYAV--LGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLA 252 (423)
T ss_pred -HHHHHHHHHH-----HHH----HHc---CCccccHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHH
Confidence 1111111111 122 221 1222211111 222344566789999999999999999863 1 0
Q ss_pred -------------------------------hhHHHHhhhchHh-HHHHHH-HHHHcccCChHHHHhhhHHHHHHHHHHH
Q 003861 385 -------------------------------RTQIEADIRPFRG-LLLGLF-FVTTGSSIDIELLFREWPNVLALLAGLI 431 (791)
Q Consensus 385 -------------------------------~~~i~~~l~~~~~-~f~~lF-Fv~vG~~l~l~~l~~~~~~~l~l~l~~l 431 (791)
.+++++.++|... +.+|+| |...|..++-+.+ .+..+.+++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~---~pv~lGI~~GLv 329 (423)
T PRK14855 253 SLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL---GTVSLGVFLGLL 329 (423)
T ss_pred HHHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC---CcHHHHHHHHHH
Confidence 1345566666644 578888 8888888843322 234456777888
Q ss_pred HHHHHHHHHhhhhc----------CCCHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Q 003861 432 IIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGG-EFAFVVFSLANR 475 (791)
Q Consensus 432 l~K~l~~~~~~~~~----------~~~~r~~~~~g~~l~~rG-~~~lvla~~a~~ 475 (791)
++|+++++..++.. +.+|++-.-.|+. +..| .+++.++..+++
T Consensus 330 vGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~L-aGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 330 LGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGLL-AGIGFTMSLFISNLAFA 383 (423)
T ss_pred hcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhCC
Confidence 99999988766542 5688888877774 4443 466667777763
|
|
| >COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-05 Score=82.68 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHHhh---h---HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc-
Q 003861 160 DVKVLSEWGILFLLFEMGLELSLARLKALA---K---FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD- 232 (791)
Q Consensus 160 ~l~~l~elgl~~lLF~~Gleldl~~Lk~~~---~---~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~- 232 (791)
....+-+--..++.+.+|+|++.+-+.... + -...-+..+++.+.+. +..++...+
T Consensus 62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----------------y~~~n~~~p~ 124 (390)
T COG3004 62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----------------YLALNAGDPA 124 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----------------hheeecCChh
Confidence 444555666677788999999876664322 1 1233444445544432 333332211
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC-CCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~-~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
...++. +-+.|+.+....++.=.| ..++...-.+++-+++||+.++++.+++.. .+-+ +..+
T Consensus 125 ~~~GWa---------IP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls-~~al--- 187 (390)
T COG3004 125 TLEGWA---------IPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLS-MAAL--- 187 (390)
T ss_pred hhcCcC---------cccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCcc-HHHH---
Confidence 111222 224566666666665443 256667778889999999999888877532 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-----cchh
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRT 386 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-----~~~~ 386 (791)
......+.++. .+++..-++.. .|+. +. ......-...|+|..++..+.|+.++-. ..-|
T Consensus 188 -~~a~~~i~vL~---------~lN~~~v~~l~-~Y~~--~g--viLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~ 252 (390)
T COG3004 188 -GIAALAIAVLA---------VLNRLGVRRLS-PYLL--VG--VILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLE 252 (390)
T ss_pred -HHHHHHHHHHH---------HHHHhCchhhh-HHHH--HH--HHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHH
Confidence 11111111111 12221111111 1221 11 1122244578999999999999999942 3447
Q ss_pred HHHHhhhchH-hHHHHHH-HHHHcccCC---hHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHH
Q 003861 387 QIEADIRPFR-GLLLGLF-FVTTGSSID---IELLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQE 451 (791)
Q Consensus 387 ~i~~~l~~~~-~~f~~lF-Fv~vG~~l~---l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~ 451 (791)
++|+.+.|.. -+.+|+| |...|.++. .+.+.+ +.-+.+++..+++|+++++..++.. +.+|++
T Consensus 253 ~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~q 330 (390)
T COG3004 253 RLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQ 330 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHH
Confidence 7888888874 5677888 888888876 444433 3335566788899999988776542 567888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHc
Q 003861 452 SVRIGLLLSQGGEFAFVVFSLANRL 476 (791)
Q Consensus 452 ~~~~g~~l~~rG~~~lvla~~a~~~ 476 (791)
-.-.+..-+-.=.+++.++..+.+.
T Consensus 331 i~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 331 IYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 7777764333335667777776554
|
|
| >PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.4e-07 Score=97.82 Aligned_cols=269 Identities=22% Similarity=0.285 Sum_probs=143.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCChHHHHH----hhhHH--HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccc
Q 003861 158 LTDVKVLSEWGILFLLFEMGLELSLARLKA----LAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRS 231 (791)
Q Consensus 158 ~~~l~~l~elgl~~lLF~~Gleldl~~Lk~----~~~~~--~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~ 231 (791)
....+.+.+--..++.|.+|+|++.+-+.. .+|.. ..-++.+++++.+ .|..++...
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----------------Iyl~~n~~~ 115 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----------------IYLAFNAGG 115 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----------------HHGGG--SS
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----------------HHheeecCC
Confidence 345667788888899999999997665432 22222 3334444444433 233443211
Q ss_pred cccccCCHHHHHHHH-HHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHH
Q 003861 232 DLVNIRSIDEAVVIG-AALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLV 309 (791)
Q Consensus 232 ~~~~~~~~~~alllg-a~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~ 309 (791)
+ . ..=| .+=..||.+..+.++.=.|. .+......+++.+++||+.++++++++.. + +-+..+ +
T Consensus 116 ~-------~--~~~GW~IP~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-~i~~~~-L- 180 (378)
T PF06965_consen 116 P-------E--AAHGWAIPMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-GISLLW-L- 180 (378)
T ss_dssp T-------T--HHHHTSSSS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHH-H-
T ss_pred C-------C--cCceEEecccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-CCCHHH-H-
Confidence 1 0 1111 12245888888887775442 34556678889999999999988887532 1 112111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch----
Q 003861 310 KESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---- 385 (791)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~---- 385 (791)
......++++ +.++| . +.++...|.. ......+.....|+|+.++..+.|+.++..+..
T Consensus 181 ---~~a~~~~~~l-----~~l~r----~-~v~~~~~Y~~----~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~ 243 (378)
T PF06965_consen 181 ---LLAAAALLLL-----FVLNR----L-GVRSLWPYLL----LGILLWYAVLKSGVHATIAGVLLALFIPARPRAGERE 243 (378)
T ss_dssp ---HHHHHHHHHH-----HHHHH----T-T---THHHHH----HHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS---
T ss_pred ---HHHHHHHHHH-----HHHHH----C-CCceehHHHH----HHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCccc
Confidence 1111111111 22222 1 1112222222 122344566789999999999999999975333
Q ss_pred -----hHHHHhhhchH-hHHHHHH-HHHHcccCChHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhhc----------CC
Q 003861 386 -----TQIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GL 447 (791)
Q Consensus 386 -----~~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~~l~~-~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~ 447 (791)
+++++.++|.. .+.+|+| |...|..++-..+.. .-+..+.+++.++++|+++++..++.. +.
T Consensus 244 ~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~ 323 (378)
T PF06965_consen 244 AESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGV 323 (378)
T ss_dssp -S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S-
T ss_pred CCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCC
Confidence 46777888884 4668888 888999887665432 123334466778899999987766542 45
Q ss_pred CHHHHHHHHHHHhhhh-hHHHHHHHHHHHc
Q 003861 448 TLQESVRIGLLLSQGG-EFAFVVFSLANRL 476 (791)
Q Consensus 448 ~~r~~~~~g~~l~~rG-~~~lvla~~a~~~ 476 (791)
+|++-.-.|+. +..| .+++.++..+.+.
T Consensus 324 ~w~~l~gv~~L-aGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 324 SWRHLYGVGLL-AGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp -GGGGTTHHHH-TT--HHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 67766666663 4433 4666667777655
|
NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A. |
| >PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0042 Score=69.50 Aligned_cols=281 Identities=19% Similarity=0.179 Sum_probs=145.5
Q ss_pred CCChHHHHHHHHHhhcccCCc--C-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 003861 135 RASPILGFFFAGIVLNQLGII--R-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 211 (791)
Q Consensus 135 ~lP~ivg~ilaGillGp~gli--~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~ 211 (791)
.+|+++-.++.|+++..+|++ + +.+..+.+.+..+-+-++..=++.|++++++..++.+..=..+.+.+.+
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~vi------ 97 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVI------ 97 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 479999999999999999988 3 3356667777777777777777889999999888775544443333222
Q ss_pred CCCCCcchhhHHHHhhcccccccccCCHH-HHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHH
Q 003861 212 LPPNGAVGTRILEFLFHSRSDLVNIRSID-EAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 290 (791)
Q Consensus 212 ~p~~~~lG~~~~~~l~g~~~~~~~~~~~~-~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l 290 (791)
|+.+.+++++.... ...|. .+.+.|.-..-|.--+.++ +..+. + ....-.....|++..-+.+
T Consensus 98 -------G~~va~~l~~~~l~---~~~wk~ag~l~gsyiGGs~N~~Av~--~al~~---~-~~~~~a~~aaDnv~~~~~~ 161 (378)
T PF05684_consen 98 -------GAVVAFLLFGGFLG---PEGWKIAGMLAGSYIGGSVNFVAVA--EALGV---S-DSLFAAALAADNVVMALWF 161 (378)
T ss_pred -------HHHHHHHHHhhccc---chHHHHHHHHHhcccCchhHHHHHH--HHHCC---C-HHHHHHHHHHHHHHHHHHH
Confidence 22223445542200 01232 2223332222222222221 11222 1 2333344555555554444
Q ss_pred HHHHHHhhc---------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHH--HHHHHHHHHHH
Q 003861 291 VILPVLESQ---------VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARS-SEAFV--ALCLLTVAGTS 358 (791)
Q Consensus 291 ~i~~~l~~~---------~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~-~e~~~--~~~l~~~~~~~ 358 (791)
.++..+... ............ .-+.-..+ .+... .+... ...+.++....
T Consensus 162 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~~~~~~~~l~~~la~a~~v~~~s~ 223 (378)
T PF05684_consen 162 AFLLALPPFARKFDRWTKADTSSIEALEEE-----------------IEAEEAEW-ARKPISQDLAFLLAVAFAVVALSH 223 (378)
T ss_pred HHHHHHhhhhHHhhhccCCCccccchhhhh-----------------hhhhhhcc-ccCCcHhHHHHHHHHHHHHHHHHH
Confidence 443333220 000000000000 00000000 00000 11111 11111111222
Q ss_pred HHHHHh-----CCh----HHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 359 LLTQKL-----GFS----DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 359 ~la~~l-----Gls----~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
++++.+ +.+ ..+-....|+..+-++..+.+ .--+++..+++=+||..+|+..|+..+.+ .+..+.+..+
T Consensus 224 ~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i 301 (378)
T PF05684_consen 224 ALAAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFI 301 (378)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHH
Confidence 233333 111 233445556666555555443 45566778899999999999999999887 4555555566
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHH
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGL 457 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~ 457 (791)
.+.+-.+..+..++++|.+..+....+-
T Consensus 302 ~l~iH~~l~l~~~kl~k~~l~~~~vAS~ 329 (378)
T PF05684_consen 302 ILAIHLLLMLILGKLFKIDLFELLVASN 329 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence 6777888888888999999988887765
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.2e-06 Score=79.65 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=66.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|.|++|...++.|. +.|.+|++|+ |+..+++.+.+. +. .+.+.++++++++++.++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll----------~~ga~V~VIs--p~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lVi 75 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLK----------DTGAFVTVVS--PEICKEMKELPY--IT---WKQKTFSNDDIKDAHLIY 75 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEc--CccCHHHHhccC--cE---EEecccChhcCCCceEEE
Confidence 357999999999999999998 8999999995 555555554331 11 245778888999999999
Q ss_pred EEeCCHHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l 629 (791)
++|+||+.|..++..+|+.
T Consensus 76 aaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 76 AATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ECCCCHHHHHHHHHHHHHC
Confidence 9999999999999999884
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=69.65 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=73.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.+++++|+| +|..+++.|. +.|++|+++|.||+.++.+++.+.+++.+|..+++.=- -++||.+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~----------~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~---y~~a~liys 83 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLK----------ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI---YKNAKLIYS 83 (134)
T ss_pred CEEEEEEec-CCHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH---HhcCCEEEE
Confidence 579999999 9999999998 88999999999999999999999999999999886432 257888877
Q ss_pred EeCCHHHHHHHHHHHHHhCCC
Q 003861 612 MYTDKKRTIEAVQRLRLAFPA 632 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~ 632 (791)
.-+-.|---.+...+|+.+.+
T Consensus 84 irpp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINVP 104 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCCC
Confidence 776666666677778888654
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.3e-05 Score=75.60 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++++|.|+|++|+.+++.|. +.|.+|++.|.+++.++++.+. +...+ |. ++. ...++|.++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~----------~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l----~~~~~Dv~v 90 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLL----------EEGAKLIVADINEEAVARAAELFGATVV--AP--EEI----YSVDADVFA 90 (200)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhh----ccccCCEEE
Confidence 47999999999999999998 8999999999999998887664 43322 22 222 224799877
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHCCCCeE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDA 656 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~----~~~~~~L~~~Gad~V 656 (791)
-+... |+.....++++..+ .|+..+|+ +++.+.|++.|+..+
T Consensus 91 p~A~~---~~I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~ 136 (200)
T cd01075 91 PCALG---GVINDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILYA 136 (200)
T ss_pred ecccc---cccCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEe
Confidence 45443 34445556777643 58888898 899999999999753
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0048 Score=66.20 Aligned_cols=253 Identities=17% Similarity=0.160 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHH
Q 003861 168 GILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGA 247 (791)
Q Consensus 168 gl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga 247 (791)
-+...+|-.|-++|++...+..|+...+...-+++.+++...+ ..++|... .+. ...+.+=+
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~-------------~~~~g~~g----~~G-ls~laiia 111 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLV-------------GKFFGAEG----IFG-LSGLAIVA 111 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHH-------------HHHcCccc----ccc-hHHHHHHH
Confidence 3667899999999999887777777666666666655443322 23444210 011 24455556
Q ss_pred HhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 003861 248 ALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGK 327 (791)
Q Consensus 248 ~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (791)
+++.|....=..+..|+|. +++.| +..++++ . ++.+...+ .+ ...
T Consensus 112 a~~~~Ng~ly~al~~~yG~-~~d~g-------------A~~~~sl----~---~GPf~tm~---------aL-----ga~ 156 (312)
T PRK12460 112 AMSNSNGGLYAALMGEFGD-ERDVG-------------AISILSL----N---DGPFFTML---------AL-----GAA 156 (312)
T ss_pred HHhcCcHHHHHHHHHHcCC-Hhhhh-------------HHhhhhh----c---cCcHHHHH---------HH-----HHH
Confidence 6677778888888888883 33333 2222222 0 11111100 00 000
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHH
Q 003861 328 YLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTT 407 (791)
Q Consensus 328 ~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~v 407 (791)
++. .+ . .... .+.+=+++.|++++|... +..+.+++-..+.+|+|-+..
T Consensus 157 gLA-~i--------p--~~~l------------------v~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~L 205 (312)
T PRK12460 157 GLA-NI--------P--IMAL------------------VAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFAL 205 (312)
T ss_pred HHh-cC--------C--hHHH------------------HHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHh
Confidence 010 00 0 0000 112335678899998532 344555555567999999999
Q ss_pred cccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH--HHHhhhhhHHHHHHHHHHHcCCcchhhhh
Q 003861 408 GSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIG--LLLSQGGEFAFVVFSLANRLGVLPLELNK 485 (791)
Q Consensus 408 G~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g--~~l~~rG~~~lvla~~a~~~g~i~~~~~~ 485 (791)
|+++|++++.+.....+.+.+..++.-....++..+++|.+.+.+..+| .+-+--|. +.+.+.-..-.. ..+....
T Consensus 206 G~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgp-AAVaAadP~~~~-~~~~Ata 283 (312)
T PRK12460 206 GAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATP-LAIAAADPSLAP-VAAAATA 283 (312)
T ss_pred cCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHH-HHHHHhchhHHH-HHHHHHH
Confidence 9999999997764445555555566666677777888898888877777 33222222 222221111111 1222223
Q ss_pred HHHHHHHHHHHhHhHHHHHHH
Q 003861 486 LLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 486 ~iv~~vvlt~iltpll~~l~~ 506 (791)
.+...+++|.++.|++..+..
T Consensus 284 qvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 284 QVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999987643
|
|
| >PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.018 Score=61.56 Aligned_cols=257 Identities=18% Similarity=0.183 Sum_probs=135.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHH
Q 003861 167 WGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIG 246 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllg 246 (791)
--+.+++|-.|-++|++...+..|+-..+-+.-+++.+++...+ ..++|...-....+-=..++.+-
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~-------------~~~fg~~Gi~~g~f~GlS~LAii 115 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLV-------------GKFFGPEGIQSGFFLGLSALAII 115 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHcCccccccccccchHHHHHH
Confidence 34678899999999999999988888888777777766544332 34555211000000113455566
Q ss_pred HHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 003861 247 AALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGG 326 (791)
Q Consensus 247 a~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (791)
++++.+....=..+..|+|. +++.|- .+...++|. ++++.+ .++..+
T Consensus 116 aa~~~~NggLY~aL~~~yGd-~~D~gA--~~i~sl~~G---Pf~tMl---------------------------~LG~sG 162 (314)
T PF03812_consen 116 AAMTNSNGGLYLALMGQYGD-EEDVGA--FSILSLNDG---PFFTML---------------------------ALGASG 162 (314)
T ss_pred HHHhcCCHHHHHHHHHHhCC-HHHhHH--HHHHHhhhh---HHHHHH---------------------------HHhhcc
Confidence 77788889999999999883 333222 222222221 111110 000001
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHH
Q 003861 327 KYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVT 406 (791)
Q Consensus 327 ~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~ 406 (791)
.--.++ ..++. .+=.++.|++++|-+ +++++.+.+-...++|+|-..
T Consensus 163 ~a~ip~-------------~~lv~------------------~llP~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~ 209 (314)
T PF03812_consen 163 LANIPW-------------MSLVA------------------ALLPIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFA 209 (314)
T ss_pred ccCCCH-------------HHHHH------------------HHHHHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhh
Confidence 000000 00000 122457888899853 467777888888999999999
Q ss_pred HcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHHHHHHhhhhhHHH----HHHHHHHHcCCcch
Q 003861 407 TGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR-VGLTLQESVRIGLLLSQGGEFAF----VVFSLANRLGVLPL 481 (791)
Q Consensus 407 vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~-~~~~~r~~~~~g~~l~~rG~~~l----vla~~a~~~g~i~~ 481 (791)
+|..+|+..+.+.-...+.+.+..+++-....++.-++ .|-+.. .|+..+....-+. +++..--+.....+
T Consensus 210 lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~----aG~A~sstAGnavatPaaiA~~dP~~~~~~~ 285 (314)
T PF03812_consen 210 LGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGV----AGAAISSTAGNAVATPAAIAAADPSFAPYAA 285 (314)
T ss_pred hcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCc----eeehHHhhhhhhhhhhHHHHHhChhhHhhHH
Confidence 99999999987642222222222223333333444443 222222 2222222222221 12111111111222
Q ss_pred hhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 482 ELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 482 ~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
..-..+...+++|.+++|++..+..
T Consensus 286 ~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 286 SATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445667889999999987643
|
There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=71.25 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=67.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++++|+|||..|+.+|+.|+ ..|..|.|.|.||-+.-++..+|+++.. ++++ ++++|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr----------~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~v 83 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALR----------GLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFV 83 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHH----------HTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEE
T ss_pred CCEEEEeCCCcccHHHHHHHh----------hCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEE
Confidence 457999999999999999999 8999999999999998888888998763 3332 56899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe---cChhhHHHHHHCCC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA---QDMMHLLDLKKAGA 653 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara---~~~~~~~~L~~~Ga 653 (791)
.+|++ .++......+++..+ -+++.+ +++-+.+.|++.+.
T Consensus 84 taTG~--~~vi~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 84 TATGN--KDVITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp E-SSS--SSSB-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred ECCCC--ccccCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 88887 344445566676544 456644 44556666766644
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00035 Score=71.51 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcC-CCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLG-FPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~-~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|++|...++.|. +.|.+|++|+.+.. ..+.+.+.+ .... +..++++++.++|.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll----------~~ga~V~VIs~~~~~~l~~l~~~~~i~~~------~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL----------KYGAHIVVISPELTENLVKLVEEGKIRWK------QKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEcCCCCHHHHHHHhCCCEEEE------ecCCChhhcCCceE
Confidence 357999999999999999998 88999999987642 233443332 2221 23455678899999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
||++|+|++.|..+...+++ + ..+-.+++++.
T Consensus 74 ViaaT~d~elN~~i~~~a~~-~---~lvn~~d~~~~ 105 (202)
T PRK06718 74 VIAATNDPRVNEQVKEDLPE-N---ALFNVITDAES 105 (202)
T ss_pred EEEcCCCHHHHHHHHHHHHh-C---CcEEECCCCcc
Confidence 99999999999999988854 2 23444555554
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00083 Score=69.44 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=79.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh----------hhHHHHHhcCCCEE--EccCCCHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP----------SVVKESRKLGFPIL--YGDASRPAV 597 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~----------~~v~~~~~~~~~~v--~GD~t~~~~ 597 (791)
..+++|.|+|++|+.+++.|. +.|. .|.+.|.|. +.++..++.+.... .+|..+++.
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~----------~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLA----------EEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEA 92 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccc
Confidence 458999999999999999998 6766 566789998 77776655432222 134444444
Q ss_pred HHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE-Eec---ChhhHHHHHHCCCCeEEcCcHHH
Q 003861 598 LLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQ---DMMHLLDLKKAGATDAILENAET 663 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~---~~~~~~~L~~~Gad~Vi~p~~~~ 663 (791)
+. .. ++|.++-++.++.. ....++++. +++|+ .+| ++++.+.|++.| .++.|+..+
T Consensus 93 l~--~~-~~DVlipaA~~~~i---~~~~a~~l~--a~~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 93 IL--GL-DVDIFAPCALGNVI---DLENAKKLK--AKVVAEGANNPTTDEALRILHERG--IVVAPDIVA 152 (217)
T ss_pred ce--ec-cccEEeeccccCcc---ChhhHhhcC--ccEEEeCCCCCCCHHHHHHHHHCC--cEEEChHHh
Confidence 43 33 89988888877544 444566664 56554 777 789999999999 467788543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0017 Score=64.09 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|-++|+|++|..+++.|. +.|++|.+.|.++++.+++.+.+.... .+-.|..++ +|.|+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~g~~~~---~s~~e~~~~-----~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLA----------KAGYEVTVYDRSPEKAEALAEAGAEVA---DSPAEAAEQ-----ADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHH----------HTTTEEEEEESSHHHHHHHHHTTEEEE---SSHHHHHHH-----BSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHH----------hcCCeEEeeccchhhhhhhHHhhhhhh---hhhhhHhhc-----ccceEee
Confidence 6889999999999999998 899999999999999999998873222 244455544 4999999
Q ss_pred eCCHHHHHHHHHH---HHHhCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCc
Q 003861 613 YTDKKRTIEAVQR---LRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 613 ~~~d~~n~~~~~~---ar~l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~ 660 (791)
..+++....+... +..+.++ .+++-..+ .+..+.+++.|+..+=.|-
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccchhhhhhhhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 9987665554443 3334443 56665443 3344556777888776654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=69.20 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=75.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----HHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----~~~L~~agi~~a~~ 608 (791)
++.|+|.|.+|..++..|. +.|++|+++|.+++..+.+++.|...-.|+.+. .+..++ ++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~ 69 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA----------QAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDL 69 (304)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCE
Confidence 5899999999999999998 789999999999999888887776441222110 011222 378999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
+++++......-.+........++..|+...|...+.+.+++
T Consensus 70 vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 70 VILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred EEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 999998765444444444445566678888887776676665
|
|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.55 Score=51.77 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=67.9
Q ss_pred HcCCChHHHHHHHHHhhccc---CCcCC-chhHH----HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQL---GIIRN-LTDVK----VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 204 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp~---gli~~-~~~l~----~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~ 204 (791)
+.++++++--++.|+++|+. +..+. ..-++ .+-++|+++ .|.+++++++.+.+.+.+......+..++
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTF 103 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45788998889999999982 22111 12233 555666654 58899999999999888777666666555
Q ss_pred HHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhc---cHHHHHHHHHh
Q 003861 205 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS---SSAFVLQLLAE 263 (791)
Q Consensus 205 ~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~T---S~avv~~lL~e 263 (791)
.....+ | .-+++ .+...++++|+-.+.. +...+.+.++.
T Consensus 104 ~~~~~~--------g----~k~l~--------l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 104 FLTVFL--------G----SSRLK--------LDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred HHHHHH--------H----HHHhC--------CChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 443322 1 13455 6778888888655443 33444455543
|
Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa. |
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.24 Score=53.95 Aligned_cols=108 Identities=22% Similarity=0.328 Sum_probs=71.9
Q ss_pred HcCCChHHHHHHHHHhhcc--cCCcCCc-hhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQ--LGIIRNL-TDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp--~gli~~~-~~l----~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
...+++.+--++.|+++|+ .+.-+.- +-+ +.+-++|+++ .|.+++++++.+.+...+....+.+.+++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3678888889999999997 4432211 122 3566666654 588999999999998887777777776665
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhc---cHHHHHHHHHhc
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLS---SSAFVLQLLAEK 264 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~T---S~avv~~lL~e~ 264 (791)
+...+ | ..+++ ++...+.++|+-.+.. +.+.+.+.++.+
T Consensus 99 ~~~~l--------g----~r~~~--------l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~ 140 (305)
T PF03601_consen 99 LTYWL--------G----RRLFG--------LDRKLAILIAAGTSICGASAIAATAPVIKAK 140 (305)
T ss_pred HHHHH--------H----HHHhC--------CCHHHHHHHHhhcccchHHHHHHHcccccCC
Confidence 44332 1 14566 6888999998666554 344444555543
|
; GO: 0016021 integral to membrane |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=65.02 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|+|.|++|..-++.|. +.|.+|+||+.+.. ..+.+.+. ...++.++.... . +++++.|
T Consensus 10 k~vlVvGgG~va~rk~~~Ll----------~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-d-----l~~~~lV 73 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLL----------KAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD-I-----LEGAFLV 73 (205)
T ss_pred CeEEEECcCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-H-----hCCcEEE
Confidence 47999999999999999998 89999999988764 34445443 566777877643 2 4679999
Q ss_pred EEEeCCHHHHHHHHHHHHHhC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~ 630 (791)
+++++|++.|..++..+++.+
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARG 94 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcC
Confidence 999999899999999999875
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0077 Score=67.08 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=86.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..++|+|+|++|+.+|..|. ..+ .+|++.|.+++.++++.+. ...+..-|+.|.+.|.++ +++.|
T Consensus 2 ~~ilviGaG~Vg~~va~~la----------~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA----------QNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCC
Confidence 46899999999999999997 455 8999999999999999776 488999999999999876 45559
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh----hHHHHHHCCCCeEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM----HLLDLKKAGATDAI 657 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~----~~~~L~~~Gad~Vi 657 (791)
+||.+.+-. .+..+...+-+.. ++.+-.+.+.+ ..+..+++|...+.
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~g--v~yvDts~~~~~~~~~~~~a~~Agit~v~ 121 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTG--VDYVDTSYYEEPPWKLDEEAKKAGITAVL 121 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhC--CCEEEcccCCchhhhhhHHHHHcCeEEEc
Confidence 998888764 4556666666664 45444444443 46667888887654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0099 Score=64.23 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=82.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|++.|.++++.+++.+.+...+. .+.+.+ -++++|.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~----------~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVi 214 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS----------ALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVI 214 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEE
Confidence 357999999999999999998 8899999999999887777666654332 222332 246899998
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHCCCCeEEcC-------cHHHHHHHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILE-------NAETSLQLGSKLL 672 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~--~~~~L~~~Gad~Vi~p-------~~~~~~~la~~~l 672 (791)
.+++..-.| ......+.++.-+|=-+.++. .-+..++.|+..+..| ...+|..+++.+.
T Consensus 215 nt~P~~ii~---~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~ 282 (287)
T TIGR02853 215 NTIPALVLT---ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLS 282 (287)
T ss_pred ECCChHHhC---HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHH
Confidence 888754222 223344455544444444332 2478899999998766 3455666665544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG3400 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0021 Score=68.56 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=132.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHh-cCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLS-AGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~-agi~~a~~v 609 (791)
+.++|+|-|+.++...+.+.+- -+.+.=+.++..|.+.+.... .+-+...+-|+|+.+.|++ .+-+..+++
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~-------~~~~~f~~vv~~~qe~~~~~~~~e~~~fh~fdaTs~~rl~~~~n~~~~~Af 74 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRH-------YSNHNFYIVVVKNQESLIPKNYPETFAFHCFDATSSFRLLQVLNDEVSDAF 74 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHH-------hcCceEEEEEeechhhcccccCcceEEEEEeCCccHHHHHHHhhhHhhhhh
Confidence 4689999999999998877520 034555778888877765443 2346788899999999987 466677766
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhc-CCChHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGF-GVMSDDVTFLR 686 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~--iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l-~~~~~~~~~l~ 686 (791)
|. ..|.++...+...+|..||+.. |+...+..++-+.+++..++.+=.|+ -++++-.+.+ +.+..-
T Consensus 75 i~-~qd~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~lid~~~-----vL~~~F~~~Lp~I~~tp----- 143 (471)
T COG3400 75 II-IQDFKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLILIDEFE-----VLANKFISRLPNIPSTP----- 143 (471)
T ss_pred ee-hhhHHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceeecchHH-----HHHHHHHHhcCCccccc-----
Confidence 54 4566788899999999988765 77777777888888888888764443 3444433332 222110
Q ss_pred HHHhc-ccccceeeeecCCCc--hhhcccccCCcchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCCC
Q 003861 687 QLVRN-SMEIQAQEVLSQKDD--QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTN 763 (791)
Q Consensus 687 ~~~~~-~~~~~~~e~~~~~~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~~ 763 (791)
+.+.. .+|+....++..+-. +.-...++..-|+..+.|+.. ..+|.++-.|||||++|..|....-
T Consensus 144 ~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk~~RIvl~YRN~k-----------lll~~~slvlqp~D~lLVvG~P~~l 212 (471)
T COG3400 144 REIGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYRIVLLYRNDK-----------LLLSTKSLVLQPRDILLVVGNPEIL 212 (471)
T ss_pred hhcccccceEEEEecCCCchhhhhhhhhhhhheeEEEEEEECCE-----------EEEeccceEecCCCEEEEeCChHHH
Confidence 11122 233332233322222 222334455556666666443 3789999999999999999987643
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0043 Score=69.48 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
...++|+|.|+.|+.+++.+. ..|.+|+++|.++++.+++.+..-..+..+..+++.+.++ +.++|.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~----------~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI 235 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMAN----------GLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLI 235 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEE
Confidence 345999999999999999998 8899999999999998887654333445566677777665 68999888
Q ss_pred EEe---CCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 611 IMY---TDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 611 v~~---~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++ +.+..++.....++.+.|+..++-.+
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 876 33333444455566666664444433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR00793 kdgT 2-keto-3-deoxygluconate transporter | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.13 Score=54.77 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred HHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhc-CCCHH
Q 003861 372 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV-GLTLQ 450 (791)
Q Consensus 372 AflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~-~~~~r 450 (791)
.++.|++++|-+ +++++.+.+-...++|+|-..+|..+|++.+.+.-...+.+-+..+++--...++.-++. |.+..
T Consensus 177 PlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g~ 254 (314)
T TIGR00793 177 PFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGDGT 254 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCCCc
Confidence 457788888853 456677777778999999999999999998865322222222222333333444554444 22222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHcC---CcchhhhhHHHHHHHHHHHhHhHHHHHHH
Q 003861 451 ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEIGR 506 (791)
Q Consensus 451 ~~~~~g~~l~~rG~~~lvla~~a~~~g---~i~~~~~~~iv~~vvlt~iltpll~~l~~ 506 (791)
.....+- .-|.-...=+..+.... ...+.....+...+++|.++.|++..+..
T Consensus 255 aG~A~ss---tAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~ 310 (314)
T TIGR00793 255 AGIAASS---SAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWS 310 (314)
T ss_pred hhhHHHH---HHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 22222111122222111 11122223344567789999999987643
|
This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=62.74 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=86.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|+|++|..+++.|. +.|++|++.|.++++++.+.+.+.... .+.+.+.+ ..+++|.++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~----------~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLA----------KRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEE
Confidence 4789999999999999998 889999999999999999988664332 33333322 34679999999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCcHHHHHHHHHH-HHhhcCCChHHHHH
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILENAETSLQLGSK-LLKGFGVMSDDVTF 684 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~~~~~~~la~~-~l~~l~~~~~~~~~ 684 (791)
++++ ..-.++..+.. +.++ .+++-..+ .+..+.+++.|+..+=.|-. .+..-++. ..-..+=+++..+.
T Consensus 67 vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs-Gg~~~a~~G~~~~~gG~~~~~~~ 143 (298)
T TIGR00872 67 VPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS-GGVWGRERGYCFMIGGDGEAFAR 143 (298)
T ss_pred cCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC-CCHHHHhcCCeeeeCCCHHHHHH
Confidence 9987 33333333333 3444 55655433 23334566778776544421 11221211 11122334555555
Q ss_pred HHHHHhc
Q 003861 685 LRQLVRN 691 (791)
Q Consensus 685 l~~~~~~ 691 (791)
...+++.
T Consensus 144 ~~~~l~~ 150 (298)
T TIGR00872 144 AEPLFAD 150 (298)
T ss_pred HHHHHHH
Confidence 5555543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=57.50 Aligned_cols=130 Identities=9% Similarity=0.000 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHh--CCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHhcc-
Q 003861 616 KKRTIEAVQRLRLA--FPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNS- 692 (791)
Q Consensus 616 d~~n~~~~~~ar~l--~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~~~- 692 (791)
|.+++..++.+... .-..++|+.+.|.++.+.++..|.+.|=.-+..+|+.+..=..+ ++.++..++++.-+
T Consensus 17 Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ-----~GL~~Iy~~iL~~~k 91 (206)
T PF06241_consen 17 DADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQ-----PGLAQIYEDILGFEK 91 (206)
T ss_pred hHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccC-----ccHHHHHHHHhCCCC
Confidence 45566666555433 22468999999999999999999998855554455444443333 77788887777554
Q ss_pred cccceeeeecCCCchhhcccccCCcchhhhhhccCCCCCCCC-----ccccccCCCCCCCCCCCCceeeeeccCCCC
Q 003861 693 MEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNGTNN 764 (791)
Q Consensus 693 ~~~~~~e~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~-----~~~~~~~p~~~~~~~~gd~~l~~~~~~~~~ 764 (791)
.++-+...+ .+. +++..+++++ -.+..| +++...-|++++.+++||++|+...-..+.
T Consensus 92 ~vf~l~~~P---------~L~--Gm~y~dvr~~---Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~ 154 (206)
T PF06241_consen 92 NVFNLKRWP---------QLD--GMKYRDVRRS---FPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGKR 154 (206)
T ss_pred cEEEEecCc---------ccC--CcCHHHHHhc---CCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCcc
Confidence 233332222 122 3455555552 222333 888999999999999999999988776554
|
They have been implicated in modulating the nuclear membrane envelope potential []. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=63.70 Aligned_cols=109 Identities=22% Similarity=0.329 Sum_probs=73.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|+|++|+.+++.|. +.|+++++.|.++++.+.+.+.|.... .+.+++.+++ +++|.|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLR----------EDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEE
Confidence 4788999999999999998 889999999999999998887664321 1223444433 357999999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEec------ChhhHHHHHHCCCCeEE
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQ------DMMHLLDLKKAGATDAI 657 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~------~~~~~~~L~~~Gad~Vi 657 (791)
+++++....+...+.. +.++ .+++... ..+..+.+++.|++.+=
T Consensus 67 vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 9987554444433333 2333 4555442 23334456677877643
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=72.60 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccC---CC-CCCCCCCcEEEEcCChhhHHHHHh-c-CCCEEEccCCCHHHHHhcCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLAS---GS-DGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~---~~-~~~~~g~~vvvID~d~~~v~~~~~-~-~~~~v~GD~t~~~~L~~agi 603 (791)
..++|+|+|.|++|+..++.|.+.-.. +. ..+..+..|++.|.+++..+++.+ . +...+..|.+|.+.|.++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~-v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY-V 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh-h
Confidence 356899999999999999999720000 00 000112349999999999887765 2 677899999999988765 4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH----HHHHCCCC
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL----DLKKAGAT 654 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~----~L~~~Gad 654 (791)
+++|+||++++. ..+..++..|-+.+ .+++....+.+..+ ..+++|+.
T Consensus 647 ~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~eky~~~e~~~L~e~Ak~AGV~ 698 (1042)
T PLN02819 647 SQVDVVISLLPA-SCHAVVAKACIELK--KHLVTASYVSEEMSALDSKAKEAGIT 698 (1042)
T ss_pred cCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEECcCCHHHHHHHHHHHHHcCCE
Confidence 569999999998 45778888888876 35544434444443 33455543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.017 Score=62.78 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=75.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.++|+|.+|+.+++.|. +.|+++++.|.++++++.+.+.|..+. .+..+..++ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~--~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLL----------RGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAK--LPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhh--cCCCCEEEEE
Confidence 4789999999999999998 789999999999999999887765431 222334433 3467899999
Q ss_pred eCCHHHHHHHHHHHHH-hCCCCcEEEEec--Ch----hhHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAVQRLRL-AFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~-l~p~~~iiara~--~~----~~~~~L~~~Gad~Vi~p 659 (791)
.++++....+...+.. +.++ .+++... ++ +..+.+++.|+..+=.|
T Consensus 67 v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 67 VPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred ecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 9886444443333333 3444 4554432 22 23456677898876444
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=66.51 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=79.1
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
|+|+|+|.+|+.+++.|.+ ..+. ++++.|.|+++.+++.+ ..+..+..|.+|++.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~---------~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR---------RGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC---------TTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhc---------CCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 6899999999999999982 3334 89999999999888754 4688999999999999887 888898
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~-----~~~~~~~L~~~Gad~Vi~ 658 (791)
||-+.+.. .+..++..+-+.+ ++.+= .. ..+..+..++.|..-++.
T Consensus 71 Vin~~gp~-~~~~v~~~~i~~g--~~yvD-~~~~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 71 VINCAGPF-FGEPVARACIEAG--VHYVD-TSYVTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EEE-SSGG-GHHHHHHHHHHHT---EEEE-SS-HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EEECCccc-hhHHHHHHHHHhC--CCeec-cchhHHHHHHHHHHHHhhCCEEEeC
Confidence 88888764 7778888888886 34333 22 234455566777765543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=58.51 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=67.6
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
|+|.|. |.+|+.+++.|. +.|++|+++-.++++.+. ..+.+++.||..|++.++++ ++++|+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~----------~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLL----------RRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAA-LKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHH-HTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHH----------HCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhh-hhhcchhhhh
Confidence 578896 999999999998 889999999999998887 77899999999999988874 3489999998
Q ss_pred eCC---HHH-HHHHHHHHHHhCC
Q 003861 613 YTD---KKR-TIEAVQRLRLAFP 631 (791)
Q Consensus 613 ~~~---d~~-n~~~~~~ar~l~p 631 (791)
.+. |.. ...++..+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTS
T ss_pred hhhhccccccccccccccccccc
Confidence 874 322 2234455555543
|
... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=64.90 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh---------------------hhH----HHHHh--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVV----KESRK-- 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~---------------------~~v----~~~~~-- 582 (791)
+.+|+|+|+|.+|..+++.|. ..|. .+++||.|. .++ +++++
T Consensus 24 ~~~VlIiG~GglGs~va~~La----------~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALV----------RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 458999999999999999998 7887 799999985 122 22222
Q ss_pred cC--CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 583 LG--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 583 ~~--~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.+ +..+..|.+. +.++++ ++++|.||.++++.+.+..+...+++.+
T Consensus 94 p~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ 141 (338)
T PRK12475 94 SEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYN 141 (338)
T ss_pred CCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 22 3455667764 445544 7899999999999998888888888875
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.016 Score=59.37 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
+-.+|+||+|..++++|. +.|++||+.|.|++.++++.+.+ ..+-.|-.+.+.+.+-.++--+++..
T Consensus 3 iGmiGLGrMG~n~v~rl~----------~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 3 IGMIGLGRMGANLVRRLL----------DGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred ceeeccchhhHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccC
Confidence 456899999999999998 89999999999999999999887 23333446677777777777777776
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChh------hHHHHHHCCCCeEE
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMM------HLLDLKKAGATDAI 657 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~------~~~~L~~~Gad~Vi 657 (791)
++.. +..+-..+-.+.++ .+|.---|.. ..+.+++.|++.+=
T Consensus 70 g~it-~~vi~~la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 70 GDIT-DAVIDDLAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred CCch-HHHHHHHHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 6533 33333444445544 4555444333 33346667777653
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=63.83 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=58.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+.+..++.||.+|++.++++ ++.+|+|+-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll----------~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQAL----------DEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIID 70 (317)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEE
Confidence 4788885 999999999998 7899999999998876666667899999999999998765 456788776
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
+.
T Consensus 71 ~~ 72 (317)
T CHL00194 71 AS 72 (317)
T ss_pred CC
Confidence 54
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=53.18 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|.|+.|..=++.|. +.|.+++++..+.+..+ .......-+. + ..+++++.|+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll----------~~gA~v~vis~~~~~~~----~~i~~~~~~~------~-~~l~~~~lV~ 65 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLL----------EAGAKVTVISPEIEFSE----GLIQLIRREF------E-EDLDGADLVF 65 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHC----------CCTBEEEEEESSEHHHH----TSCEEEESS-------G-GGCTTESEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhhh----hHHHHHhhhH------H-HHHhhheEEE
Confidence 457999999999999999998 89999999999862222 2333332222 2 3478899999
Q ss_pred EEeCCHHHHHHHHHHHHHhC
Q 003861 611 IMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~ 630 (791)
++++|.+.|-.+...+|+.+
T Consensus 66 ~at~d~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 66 AATDDPELNEAIYADARARG 85 (103)
T ss_dssp E-SS-HHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999875
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=58.99 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=64.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|+++..=++.|. +.|.+|+||-. +++..+...+..+.++..+.... .++.++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll----------~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~------dl~g~~L 88 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFL----------KKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE------FIKDKHL 88 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCcE
Confidence 348999999999999888887 78999999954 44443333334566776655433 2467899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
|+++|+|.+.|-.++..+++.+
T Consensus 89 ViaATdD~~vN~~I~~~a~~~~ 110 (223)
T PRK05562 89 IVIATDDEKLNNKIRKHCDRLY 110 (223)
T ss_pred EEECCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999874
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.15 Score=61.14 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhcccCCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQLGIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 201 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~l 201 (791)
......+++..++++..+|-.++|++++....-+ -.+.++.+..+-+.++....|+.+|++.+.+.+..+..+....++
T Consensus 227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~ 306 (621)
T PRK03562 227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLA 306 (621)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4445567888999999999999999998532211 124566777787888888899999999887665443322222221
Q ss_pred HHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhcc-HH-HHHHHHHhcCCCC
Q 003861 202 LSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSS-SA-FVLQLLAEKGELP 268 (791)
Q Consensus 202 lt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS-~a-vv~~lL~e~~~~~ 268 (791)
.=++ |..+...++| .++.+++.+|..++.-+ .+ ++..+-.+.|..+
T Consensus 307 ~K~~-------------~~~~~~~~~g--------~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~ 354 (621)
T PRK03562 307 IKIA-------------MLWLLARPLG--------VPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLE 354 (621)
T ss_pred HHHH-------------HHHHHHHHhC--------CCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCC
Confidence 1111 2222345666 68999999999887643 22 2334444555444
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.16 Score=60.73 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhcccCCcCC-chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 003861 123 VTVIVVPVFKIARASPILGFFFAGIVLNQLGIIRN-LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 201 (791)
Q Consensus 123 ~a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~~-~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~l 201 (791)
+.....++++.+|++.++|-.++|++++....-+. ...++.+.++-+.++....|+.+|++.+.+.+..++.+.+..++
T Consensus 224 ~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~ 303 (601)
T PRK03659 224 LVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHH
Confidence 34455567889999999999999999986432111 23577778888888889999999999987766544333222222
Q ss_pred HHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhcc
Q 003861 202 LSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSS 253 (791)
Q Consensus 202 lt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS 253 (791)
.=++ +..+...++| .++..++.+|..++..+
T Consensus 304 ~K~~-------------~~~~~~~~~g--------~~~~~al~~g~~L~~~G 334 (601)
T PRK03659 304 VKGL-------------VLYLLARLYG--------LRSSERMQFAGVLSQGG 334 (601)
T ss_pred HHHH-------------HHHHHHHHhC--------CCHHHHHHHHHHHhccc
Confidence 2122 1222345666 68999999998887654
|
|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.091 Score=57.15 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=77.3
Q ss_pred HhCChHHHHHHHHhHhcCC-c-cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003861 363 KLGFSDTLGAFLAGAILAE-T-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 440 (791)
Q Consensus 363 ~lGls~~LgAflaGl~l~~-~-~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~ 440 (791)
..++++.+=|.+.|++++| . ...+..+.-++.-...++.+=-+..|.+++++++.+..+..+......+..-+...++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999 4 3444444444433457778888999999999999875443344444455555556667
Q ss_pred hh-hhcCCCHHHHHHHHHHHhhhhhHHHHHHH
Q 003861 441 IG-PRVGLTLQESVRIGLLLSQGGEFAFVVFS 471 (791)
Q Consensus 441 ~~-~~~~~~~r~~~~~g~~l~~rG~~~lvla~ 471 (791)
.+ +++|++++.+..++.+.+-=|.-+++...
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 77 88999999999999886555654444433
|
; GO: 0016021 integral to membrane |
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.15 Score=54.60 Aligned_cols=141 Identities=18% Similarity=0.321 Sum_probs=90.9
Q ss_pred HHHHHHHHhCChHHHHHHHHhHhcCCccch-hHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHH
Q 003861 356 GTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIK 434 (791)
Q Consensus 356 ~~~~la~~lGls~~LgAflaGl~l~~~~~~-~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K 434 (791)
....+++.++++..++-.++|++++..-.. -+-.+.++.+..+-..++....|+++|++.+.+++.....+....++.-
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~ 85 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVP 85 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999975211 0111235556667777888899999999999876655554444444443
Q ss_pred -HHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhH
Q 003861 435 -TLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALT 498 (791)
Q Consensus 435 -~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~ilt 498 (791)
....+.....++.++.+++.+|..+++-+ .-++.....+.+..+.+.-..+....+++=+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~ 148 (273)
T TIGR00932 86 GVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDIAV 148 (273)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHHHH
Confidence 33333355567899999999998776553 233334445566666555555444444444333
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=51.90 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=56.5
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCC---CcEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.++|+|++|+.+++.|. +.| .++.++ +.++++.+++.++.-..+.. .++.++.+ ++|.+
T Consensus 2 I~iIG~G~mg~al~~~l~----------~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~advv 65 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLL----------ASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-DDNEEAAQ-----EADVV 65 (96)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-EEHHHHHH-----HTSEE
T ss_pred EEEECCCHHHHHHHHHHH----------HCCCCceeEEeeccCcHHHHHHHHHhhcccccc-CChHHhhc-----cCCEE
Confidence 678899999999999998 778 889967 99999999886543322222 24555654 78889
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
+++.......- ++...+...++ +++.
T Consensus 66 ilav~p~~~~~-v~~~i~~~~~~-~~vi 91 (96)
T PF03807_consen 66 ILAVKPQQLPE-VLSEIPHLLKG-KLVI 91 (96)
T ss_dssp EE-S-GGGHHH-HHHHHHHHHTT-SEEE
T ss_pred EEEECHHHHHH-HHHHHhhccCC-CEEE
Confidence 88887643222 22223444444 4443
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0089 Score=67.99 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|||++|+.+++.++ ..|.+|+++|.|+.+...+...|+.++ + -++.+ +++|.++
T Consensus 254 GKtVvViGyG~IGr~vA~~ak----------a~Ga~VIV~e~dp~r~~eA~~~G~~vv--~--leEal-----~~ADVVI 314 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMK----------AAGARVIVTEIDPICALQALMEGYQVL--T--LEDVV-----SEADIFV 314 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhHHHHhcCCeec--c--HHHHH-----hhCCEEE
Confidence 467999999999999999998 889999999999988777777777654 1 12333 5689887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKA 651 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~ 651 (791)
.++++. ++........+.++..++- +.++.-+...|.++
T Consensus 315 ~tTGt~--~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 315 TTTGNK--DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred ECCCCc--cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 766653 3333455566666544333 33345666666654
|
|
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.92 Score=50.23 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=77.2
Q ss_pred HHHHHHHhC-----ChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHH-H
Q 003861 357 TSLLTQKLG-----FSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLA-L 426 (791)
Q Consensus 357 ~~~la~~lG-----ls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~-l 426 (791)
..++.+.++ ++...++++.|+++.|. ...+...+..+.+.+.-..+|-.+.=|++.+-.+.+.+..++. +
T Consensus 234 G~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL 313 (404)
T COG0786 234 GKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVIL 313 (404)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344666655 67789999999999985 2222344556666788888888888888988888765444333 3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhh-hhHHHHHHHHH
Q 003861 427 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQG-GEFAFVVFSLA 473 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~r-G~~~lvla~~a 473 (791)
.+-.++.-....+...+.+|.++..+...+..++.. |...-.++++.
T Consensus 314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM~ 361 (404)
T COG0786 314 AVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANMQ 361 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhhh
Confidence 333344445555666777899998888766555433 55555665543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0088 Score=68.21 Aligned_cols=101 Identities=15% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|++|+.+++.++ ..|.+|++.|.||.+...+...|+.+.. ++++ ++.+|.++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~----------a~Ga~ViV~e~dp~~a~~A~~~G~~~~~--------leel-l~~ADIVI 314 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALR----------GFGARVVVTEIDPICALQAAMEGYQVVT--------LEDV-VETADIFV 314 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhHHHHHhcCceecc--------HHHH-HhcCCEEE
Confidence 457999999999999999998 8999999999999887666656665431 2222 46899998
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAG 652 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~G 652 (791)
.++++ .++.-....+.+.|+..++- |-+++...+.|+..+
T Consensus 315 ~atGt--~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATGN--KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred ECCCc--ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 88764 33333456666666654333 333333445566544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0061 Score=58.94 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=74.7
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----HHHHH--hcCCCCCc
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLL--SAGITSPK 607 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----~~~L~--~agi~~a~ 607 (791)
+.|+|.|.+|..+|-.|. +.|++|.+++..+ +.+..++.|..+...+..+ +.... ....+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~----------~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA----------QAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHH----------HCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 579999999999999998 7999999999999 8888888887776655100 00000 34668899
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~ 651 (791)
.+++++......- +...++. ..|+..|+.-.|-..+.+.+++.
T Consensus 70 ~viv~vKa~~~~~-~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 70 LVIVAVKAYQLEQ-ALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp EEEE-SSGGGHHH-HHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred EEEEEecccchHH-HHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 9999987643333 3333444 45555677777778878877765
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=66.40 Aligned_cols=100 Identities=14% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + ++++ ++.+|.+|
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr----------~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~------l~ea-l~~aDVVI 272 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLR----------GLGARVIVTEVDPICALQAAMDGFRVM--T------MEEA-AELGDIFV 272 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCchhhHHHHhcCCEec--C------HHHH-HhCCCEEE
Confidence 457999999999999999998 889999999999998777776676543 1 1222 35799888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcE--EEEecChhhHHHHHHC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPI--YARAQDMMHLLDLKKA 651 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~i--iara~~~~~~~~L~~~ 651 (791)
.++++. ++.-....+.+.++..+ +.+.+++-+...|++.
T Consensus 273 ~aTG~~--~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 273 TATGNK--DVITAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred ECCCCH--HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 887763 33323344445444332 2344455555656654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=66.06 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|||..|+.+++.++ ..|.+|+++|.||.+...++..|+.+.. . ++. ++++|.+|
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak----------~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--l--eea-----l~~aDVVI 255 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRAR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--M--EEA-----AKIGDIFI 255 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHh----------hCcCEEEEEeCChhhHHHHHhcCCEeCC--H--HHH-----HhcCCEEE
Confidence 457999999999999999998 8899999999999987777777775431 1 222 46789888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.++++
T Consensus 256 taTG~ 260 (406)
T TIGR00936 256 TATGN 260 (406)
T ss_pred ECCCC
Confidence 87775
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=56.30 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|+|.+|+.+++.|. +.| .++.++|.++++.+.+.+. +...+..+.++.+.+ ++++|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~----------~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALA----------ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc----cccCCE
Confidence 457999999999999999998 564 7899999999988776543 221111233333222 689999
Q ss_pred EEEEeCCHHH---HHHHHHHHHHhCCCCcEEEEecCh---hhHHHHHHCCCCeEEcCc
Q 003861 609 VMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 609 viv~~~~d~~---n~~~~~~ar~l~p~~~iiara~~~---~~~~~L~~~Gad~Vi~p~ 660 (791)
+|.+++.+.. +.... .....++..++-....+ +-.+..++.|+. ++...
T Consensus 85 vi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~-~v~g~ 139 (155)
T cd01065 85 IINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAK-TIDGL 139 (155)
T ss_pred EEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCc-eeCCH
Confidence 9999988653 22111 12233432233222222 455677888884 44544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.035 Score=60.27 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=69.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC------HHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR------PAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~------~~~L~~agi~~a 606 (791)
++.|+|.|.+|..++..|. +.|++|++++. +++.+.+++.+..+-..+... ....++ ..+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~----------~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL----------EAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE-LTGPF 69 (305)
T ss_pred eEEEECCCHHHHHHHHHHH----------HCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH-ccCCC
Confidence 5889999999999999998 78999999999 888888887776554332110 001111 23789
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~ 650 (791)
|.+++++......- +...++. ..++..|+.-.|--.+.+.+++
T Consensus 70 d~vilavk~~~~~~-~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 70 DLVILAVKAYQLDA-AIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CEEEEEecccCHHH-HHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 99999988754333 2333443 4455456666666555666654
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=62.35 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=52.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC-----CCEEEccCCCH------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG-----FPILYGDASRP------------ 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~-----~~~v~GD~t~~------------ 595 (791)
++.|+|.|.+|..+|..|. +.|++|+++|.|++.++++.+.- ..+-.|+.++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 72 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFA----------VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS 72 (288)
T ss_pred EEEEECccHHHHHHHHHHH----------hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 6899999999999999998 78999999999999988765310 00001112111
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR 618 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~ 618 (791)
+.+ +..+++||.|+.+.+++..
T Consensus 73 ~~~-~~~~~~aD~Vi~avpe~~~ 94 (288)
T PRK09260 73 LDL-KAAVADADLVIEAVPEKLE 94 (288)
T ss_pred CcH-HHhhcCCCEEEEeccCCHH
Confidence 111 2346889999999988743
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.055 Score=58.76 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=74.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
..++.|+|+|+.|+.+++.|+ ..|.+|.++|.++++.+.+++.|...+. .+.+.+ -+.++|.||
T Consensus 152 g~kvlViG~G~iG~~~a~~L~----------~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI 215 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK----------ALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIF 215 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEE
Confidence 458999999999999999998 8899999999999988888877765442 122322 356899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH--HHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~--~~L~~~Gad~Vi~p 659 (791)
.+++....+ ....+.+.|+.-+|=-+.++-.. +..++.|+..+-.+
T Consensus 216 ~t~p~~~i~---~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 216 NTIPALVLT---KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAP 263 (296)
T ss_pred ECCChhhhh---HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEEC
Confidence 887653222 22334455654455444443222 34577888877433
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.053 Score=57.74 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=79.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC----cEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~----~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.++|+|.+|..+++.|. +.|+ ++++. |.++++.+.+.+.|.... .+..+. ++++|
T Consensus 2 kI~~IG~G~mG~a~a~~L~----------~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~---~~~~e~-----~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV----------ASGVVPPSRISTADDSNPARRDVFQSLGVKTA---ASNTEV-----VKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 4788999999999999998 6676 78888 999999888887775432 111222 35789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEe-cChhhHHHHHHCCCCeEE--cCcHHHHHHHHHHHH-hhcCCChHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARA-QDMMHLLDLKKAGATDAI--LENAETSLQLGSKLL-KGFGVMSDDV 682 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara-~~~~~~~~L~~~Gad~Vi--~p~~~~~~~la~~~l-~~l~~~~~~~ 682 (791)
.|++++++ .....+...++.. .++ ++++.. ........-+..|..+++ .|..-....-....+ ..-+.++...
T Consensus 64 vVil~v~~-~~~~~vl~~l~~~~~~~-~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~ 141 (266)
T PLN02688 64 VIILAVKP-QVVKDVLTELRPLLSKD-KLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDR 141 (266)
T ss_pred EEEEEECc-HHHHHHHHHHHhhcCCC-CEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHH
Confidence 99999954 4333433444333 344 444433 443333333445554443 454322111111101 1112344556
Q ss_pred HHHHHHHhccc
Q 003861 683 TFLRQLVRNSM 693 (791)
Q Consensus 683 ~~l~~~~~~~~ 693 (791)
+.+.++++.-+
T Consensus 142 ~~v~~l~~~~G 152 (266)
T PLN02688 142 DLVATLFGAVG 152 (266)
T ss_pred HHHHHHHHhCC
Confidence 66666665544
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.03 Score=61.26 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=61.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--------c--cCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--------G--DASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--------G--D~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. +.|++|.++|.+++.++.+++.+.+..+ + -.++.+ + -
T Consensus 3 kI~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 68 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLA----------RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-A 68 (325)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-H
Confidence 5899999999999999998 7899999999999999888775432111 0 012222 1 1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
++++|.+++++.++.. ..+...+.. ..++..++...
T Consensus 69 ~~~~D~vi~~v~~~~~-~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 69 LADADLILVAVPSQAL-REVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HhCCCEEEEeCCHHHH-HHHHHHHHhhcCCCCEEEEEe
Confidence 4578999999987532 222233333 34554444444
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0067 Score=68.23 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE------EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV------AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv------vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.+.|+|+|||..|+.-|..|+ ..|.+|+ +||.+.+..+.+.+.|+.+ + + ++++ ++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLr----------dSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~--~----~~Ea-~~ 96 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMR----------DSGLDISYALRKEAIAEKRASWRKATENGFKV--G--T----YEEL-IP 96 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCc----------cccceeEEeccccccccccchHHHHHhcCCcc--C--C----HHHH-HH
Confidence 467999999999999999998 8899999 8999999888888888854 2 2 3333 78
Q ss_pred CCcEEEEEeCCHHHHHH
Q 003861 605 SPKAVMIMYTDKKRTIE 621 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~ 621 (791)
+||.|+++++|......
T Consensus 97 ~ADvVviLlPDt~q~~v 113 (487)
T PRK05225 97 QADLVINLTPDKQHSDV 113 (487)
T ss_pred hCCEEEEcCChHHHHHH
Confidence 99999999998754333
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.063 Score=58.03 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=71.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-|+|+|.+|+.+++.|. +.|++|++.|.++++.+++.+.|... .++++ + -++++|.++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---~-~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLA----------KAGYQLHVTTIGPEVADELLAAGAVT----AETAR---Q-VTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCcc----cCCHH---H-HHhcCCEEEEe
Confidence 3678999999999999998 88999999999999999888766532 12221 1 13579999999
Q ss_pred eCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--h----hhHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~-~ar~l~p~~~iiara~~--~----~~~~~L~~~Gad~Vi~p 659 (791)
.+++.....+. . .+....|+ .+++-..+ + +-.+.+++.|+..+-.|
T Consensus 63 vp~~~~~~~v~~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCCHHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 98764322222 1 12233443 45554322 2 23345666788866655
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.041 Score=58.03 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=71.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+++|+|.|..++.+++... ..|++|+++|.+++.....+-.+...+..+. -++.+.. +..-+++
T Consensus 99 p~~~L~IfGaG~va~~la~la~----------~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~t~v 165 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALA----------PLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVAE--APPGSYF 165 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHh----------cCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHhc--CCCCcEE
Confidence 4568999999999999999998 8999999999998854333323333233222 1334443 5567788
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH---HHHHCCC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA 653 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~---~L~~~Ga 653 (791)
+++|.|.+....+...+-+..|-.+|=+--....+.+ .|++.|.
T Consensus 166 vi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 166 LVLTHDHALDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred EEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 8999886655555555543233335555555444444 4445554
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.02 Score=61.61 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|.|+|+|.+|..++..|. +.|++|.++|.+++..+++.+.|... -..++.+ .++++|.|+++
T Consensus 2 ~I~IIG~G~mG~sla~~L~----------~~g~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR----------SLGHTVYGVSRRESTCERAIERGLVD--EASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCcc--cccCCHh-----HhcCCCEEEEc
Confidence 4789999999999999998 78999999999999998887765321 1112222 25789999999
Q ss_pred eCCHH
Q 003861 613 YTDKK 617 (791)
Q Consensus 613 ~~~d~ 617 (791)
++.+.
T Consensus 65 vp~~~ 69 (279)
T PRK07417 65 LPIGL 69 (279)
T ss_pred CCHHH
Confidence 98654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.25 Score=58.63 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchh-HHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHH
Q 003861 351 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 429 (791)
Q Consensus 351 l~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~-~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~ 429 (791)
+.++.....++..++++.++|=.++|++++..-... .-.+.++.+.++-..++...+|+++|++.+.+.........+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667888999999999999999998752211 0113355566777777778889999999886543322222222
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHcCCcch
Q 003861 430 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 481 (791)
Q Consensus 430 ~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~a~~~g~i~~ 481 (791)
-++.-.+..+.....++.++.+++.+|..++.-+. .++...-.+.+.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 22223333344455678899999998876655322 233444455565544
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.029 Score=58.34 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=67.8
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
|+|.|. |..|+.+++.|. +.+++|.++-.|+. ..+.+++.|..++.+|..|++.|.++ ++.+|.++
T Consensus 1 I~V~GatG~~G~~v~~~L~----------~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL----------SAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHH----------hCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEE
Confidence 467775 999999999998 78999999988864 47788889999999999999999764 56889898
Q ss_pred EEeC---CH--HHHHHHHHHHHHhCC
Q 003861 611 IMYT---DK--KRTIEAVQRLRLAFP 631 (791)
Q Consensus 611 v~~~---~d--~~n~~~~~~ar~l~p 631 (791)
.+++ +. +.-..++..+++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 70 SVTPPSHPSELEQQKNLIDAAKAAGV 95 (233)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHHT-
T ss_pred eecCcchhhhhhhhhhHHHhhhcccc
Confidence 8888 33 233345677777763
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.025 Score=63.94 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.++ ..|.+|+++|.||.+.+.+++.|+.++.- ++. ++.+|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak----------~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~----~e~-----v~~aDVVI 262 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLR----------GQGARVIVTEVDPICALQAAMEGYEVMTM----EEA-----VKEGDIFV 262 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECChhhHHHHHhcCCEEccH----HHH-----HcCCCEEE
Confidence 457999999999999999998 88999999999999999999888765421 222 25689998
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
.++++.
T Consensus 263 ~atG~~ 268 (413)
T cd00401 263 TTTGNK 268 (413)
T ss_pred ECCCCH
Confidence 888764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.063 Score=57.99 Aligned_cols=106 Identities=23% Similarity=0.269 Sum_probs=70.1
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~ 615 (791)
++|.|.+|..+++.|. +.|++|.+.|.++++++.+.+.|... ..+++ + -++++|.|+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---~-~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLL----------KAGHPVRVFDLFPDAVEEAVAAGAQA----AASPA---E-AAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHcCCee----cCCHH---H-HHhcCCEEEEeCCC
Confidence 5799999999999998 88999999999999999998876532 11222 1 14578999999998
Q ss_pred HHHHHHHH---HHHH-HhCCCCcEEEEec--Chhh----HHHHHHCCCCeEEcCc
Q 003861 616 KKRTIEAV---QRLR-LAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILEN 660 (791)
Q Consensus 616 d~~n~~~~---~~ar-~l~p~~~iiara~--~~~~----~~~L~~~Gad~Vi~p~ 660 (791)
+..--.+. ..+. ...++ .+++-.. +++. .+.+++.|++.+=.|-
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv 116 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAPV 116 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECCC
Confidence 55333322 1222 33343 3444333 3332 3455667988776553
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.29 Score=57.77 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=48.3
Q ss_pred HHHHHHhHhcCCc--cchhHHHHhhhc-hHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHhh
Q 003861 370 LGAFLAGAILAET--NFRTQIEADIRP-FRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAIG 442 (791)
Q Consensus 370 LgAflaGl~l~~~--~~~~~i~~~l~~-~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~~ 442 (791)
-|++++|++++.- ++...+.+.... ++++...+|...+|++.-++.+.. . |... ++.++.+++-.+.++...
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~-~~~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLN-LFAVLIVILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5778888888872 112222222233 478999999999999998776643 2 2222 222333333344455556
Q ss_pred hhcCCCHHH
Q 003861 443 PRVGLTLQE 451 (791)
Q Consensus 443 ~~~~~~~r~ 451 (791)
+.+|+++-.
T Consensus 113 ~~~~~~~~~ 121 (552)
T PRK03818 113 KLFGIPLPV 121 (552)
T ss_pred HHhCCCHHH
Confidence 678887663
|
|
| >PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.082 Score=53.49 Aligned_cols=128 Identities=21% Similarity=0.289 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCCh-----HHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCC
Q 003861 140 LGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSL-----ARLKALAKFAFGMGLTQVVLSTLAFTAFELPP 214 (791)
Q Consensus 140 vg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl-----~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~ 214 (791)
++.+++|+++|.+...+ .+..+...+..+.+++|.+|+++-- +++|+.+++++.+.+..++.+.+....
T Consensus 2 l~~li~Gi~lG~~~~~~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l----- 75 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLL----- 75 (191)
T ss_pred eeeHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----
Confidence 45678899999865444 3333788999999999999998843 456667788888777766665543332
Q ss_pred CCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 215 NGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 215 ~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
..++++ .++.+++.+|+-+.==|- .-.++.|.. +.+.|.+++=.-++-++.++++.-++
T Consensus 76 --------~~~ll~--------~~~~~~lav~sG~GwYSl--sg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 76 --------ASLLLG--------LSLKESLAVASGFGWYSL--SGVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred --------HHHHhc--------CCHHHHHHHHccCcHHHh--HHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 688888888875532111 112244432 34667766665666666555554443
|
Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.082 Score=61.05 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=74.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++-|+|.|.+|..+|+.|. +.|++|.+.|.++++++++.+. |..+ .+ .++++-+- ..++++|.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~----------~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v-~~l~~~d~ 69 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIA----------SRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELV-NSLKKPRK 69 (470)
T ss_pred EEEEEeEhHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHH-hcCCCCCE
Confidence 5889999999999999998 8999999999999999888753 4322 12 22332221 13457898
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p 659 (791)
++++..+++..-.+...+.. +.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 70 Iil~v~~~~~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 70 VILLIKAGEAVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred EEEEeCChHHHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 88886666544444333333 4444 56665543 234556677788765444
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.062 Score=58.25 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|.|++|..+++.|. +.|+++.+.|.+++ .+++.+.|.... .+++.+ .+++|.|+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~----------~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLA----------RAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEe
Confidence 4788999999999999998 88999999999885 466665554322 222221 3688999999
Q ss_pred eCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hh----hHHHHHHCCCCeEEcCcHHHHHHHHHH-H-HhhcCCChH
Q 003861 613 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILENAETSLQLGSK-L-LKGFGVMSD 680 (791)
Q Consensus 613 ~~~d~~n~~~~~----~ar~l~p~~~iiara~~--~~----~~~~L~~~Gad~Vi~p~~~~~~~la~~-~-l~~l~~~~~ 680 (791)
..+++....+.. .+....|+ ++++-..+ ++ -.+.+++.|++.+-.|- ..+..-++. - .-..+=++.
T Consensus 63 v~~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV-sGg~~~a~~g~l~~~~gG~~~ 140 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAPV-SGGEIGAREGTLSIMVGGDEA 140 (292)
T ss_pred CCChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHhcCcEEEEEcCCHH
Confidence 998754333321 12223343 56665543 32 33667788999877763 222222221 1 112234555
Q ss_pred HHHHHHHHHhc
Q 003861 681 DVTFLRQLVRN 691 (791)
Q Consensus 681 ~~~~l~~~~~~ 691 (791)
.++.++.+++.
T Consensus 141 ~~~~~~p~l~~ 151 (292)
T PRK15059 141 VFERVKPLFEL 151 (292)
T ss_pred HHHHHHHHHHH
Confidence 56666655554
|
|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.26 Score=54.29 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=70.4
Q ss_pred hCChHHHHHHHHhHhcCCcc---chhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003861 364 LGFSDTLGAFLAGAILAETN---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 440 (791)
Q Consensus 364 lGls~~LgAflaGl~l~~~~---~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~ 440 (791)
.++++.+=|.+.|++++|.- ..+....-++-....++-+=-+..|++++++++.+..+..+.+.+..+..-+...++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999952 222222222211345566666899999999999765444444444445555555566
Q ss_pred hh-hhcCCCHHHHHHHHHHHhhhhhHHHHH
Q 003861 441 IG-PRVGLTLQESVRIGLLLSQGGEFAFVV 469 (791)
Q Consensus 441 ~~-~~~~~~~r~~~~~g~~l~~rG~~~lvl 469 (791)
.+ +++|++++.+..++.+.+-=|.-+++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 66 689999999999998755555544443
|
Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa. |
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
Probab=95.80 E-value=4.6 Score=45.74 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=62.2
Q ss_pred hCChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHH-HHH
Q 003861 364 LGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT-LII 438 (791)
Q Consensus 364 lGls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~-l~~ 438 (791)
+.++...+|++.|+++.|. +..+-..+.++.+.+...-+|-++.=|++++..+.+.+..++.+++.-++.-. ...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999984 22222233556667888888888888899999998887776665555544444 344
Q ss_pred HHhhhhcCCCHHHHHH
Q 003861 439 SAIGPRVGLTLQESVR 454 (791)
Q Consensus 439 ~~~~~~~~~~~r~~~~ 454 (791)
++..+.+|.+ -|+..
T Consensus 323 fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHhHHhccch-HHHHH
Confidence 5555667777 44444
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.069 Score=57.98 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=84.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|.|.+|..+++.|. +.|++|.+.|.++++.+++.+.+... .++++ ++ ++++|.++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~----------~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~---~~-~~~aDvVi~~ 64 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLL----------KQGHQLQVFDVNPQAVDALVDKGATP----AASPA---QA-AAGAEFVITM 64 (296)
T ss_pred eEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHH---HH-HhcCCEEEEe
Confidence 5889999999999999998 88999999999999999888766432 12222 11 3678999999
Q ss_pred eCCHHHHHHHHHH----HHHhCCCCcEEEEec--Chh----hHHHHHHCCCCeEEcCcHHHHHHHHHH--HHhhcCCChH
Q 003861 613 YTDKKRTIEAVQR----LRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILENAETSLQLGSK--LLKGFGVMSD 680 (791)
Q Consensus 613 ~~~d~~n~~~~~~----ar~l~p~~~iiara~--~~~----~~~~L~~~Gad~Vi~p~~~~~~~la~~--~l~~l~~~~~ 680 (791)
.+++..--.+... .+...++ .+++... ++. -.+.+.+.|+..+=.|-.- +..-++. +.-..|-+++
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g-~~~~a~~g~l~~~~gg~~~ 142 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR-TSDNAITGTLLLLAGGTAE 142 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC-CHHHHHhCcEEEEECCCHH
Confidence 9987532222211 1222233 4554433 333 3355677788876555422 2222221 1122344566
Q ss_pred HHHHHHHHHhc
Q 003861 681 DVTFLRQLVRN 691 (791)
Q Consensus 681 ~~~~l~~~~~~ 691 (791)
..+....+++.
T Consensus 143 ~~~~~~p~l~~ 153 (296)
T PRK15461 143 QVERATPILMA 153 (296)
T ss_pred HHHHHHHHHHH
Confidence 66655555543
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.042 Score=58.90 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=76.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+|-++|+|.+|..+|+.|. +.|+++.+.|.++++ ++.+++.|..... ++ ..-++++|.||.
T Consensus 2 kIafIGLG~MG~pmA~~L~----------~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVit 63 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLL----------KAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVIT 63 (286)
T ss_pred eEEEEcCchhhHHHHHHHH----------HCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEE
Confidence 5788999999999999998 899999999999999 7777777765532 22 123578999999
Q ss_pred EeCCHHHHHHHHH----HHHHhCCCCcEEEEec--C----hhhHHHHHHCCCCeEEcCc
Q 003861 612 MYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--D----MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 612 ~~~~d~~n~~~~~----~ar~l~p~~~iiara~--~----~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+|+..-..+.. .+..+.|+ .++.-.. + .+..+.+++.|.+.+=-|-
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPV 121 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAPV 121 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence 9998765444332 33333344 3443332 3 4555667888988876663
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.1 Score=60.21 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=74.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC--EEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~--~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++-++|.|.+|..+++.|. +.|++|.+.|.++++++++.+.+.. -+. ...+.+.+. ..++++|.|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~----------~~G~~V~v~drt~~~~~~l~~~~~~g~~~~-~~~s~~e~v-~~l~~~dvIi 68 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA----------DHGFTVSVYNRTPEKTDEFLAEHAKGKKIV-GAYSIEEFV-QSLERPRKIM 68 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHhhccCCCCce-ecCCHHHHH-hhcCCCCEEE
Confidence 3678999999999999998 8999999999999999988765111 011 123333332 1356789888
Q ss_pred EEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p 659 (791)
++..+++..-.+...+.. +.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 69 l~v~~~~~v~~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 69 LMVKAGAPVDAVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSG 123 (467)
T ss_pred EECCCcHHHHHHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCC
Confidence 888885443333333333 3444 56665544 224456677788766554
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.16 Score=55.11 Aligned_cols=110 Identities=22% Similarity=0.141 Sum_probs=79.7
Q ss_pred HHHHHHhCChHHHHHHHHhHhcCCc-cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHH
Q 003861 358 SLLTQKLGFSDTLGAFLAGAILAET-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTL 436 (791)
Q Consensus 358 ~~la~~lGls~~LgAflaGl~l~~~-~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l 436 (791)
....+..|++...=|.+.|+++++. +.+++..+-++--...+..+=-++.|++++++++.+.-...+.+.+..+..-++
T Consensus 29 ~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 29 FFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 3455677788888899999999965 333344444443355677777889999999999987544455555666677777
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHhhhhhHHH
Q 003861 437 IISAIGPRVGLTLQESVRIGLLLSQGGEFAF 467 (791)
Q Consensus 437 ~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~l 467 (791)
..++.+.++|++++.+..+|.+-+-=|.-++
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAi 139 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAI 139 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHH
Confidence 7888888999999999999987554454333
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.098 Score=57.07 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHH-----hcCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLL-----SAGITS 605 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~-----~agi~~ 605 (791)
.+|.|+|.|-+|..++-.|. +.|.+|++++..+++++.+++. |.... .+... .... ..-.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~----------~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~-~~~~~~~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA----------RAGLPVRLILRDRQRLAAYQQAGGLTLV-EQGQA-SLYAIPAETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hCCCCeEEEEechHHHHHHhhcCCeEEe-eCCcc-eeeccCCCCcccccc
Confidence 46999999999999999998 7899999999998888888754 54332 22211 1100 111347
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC-CCCeEEc
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA-GATDAIL 658 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~-Gad~Vi~ 658 (791)
+|.+++++-.... ..+...++. ++++..|+.-.|--.+.+.+++. +.+.|+.
T Consensus 71 ~D~viv~vK~~~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~ 124 (305)
T PRK05708 71 IHRLLLACKAYDA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIF 124 (305)
T ss_pred cCEEEEECCHHhH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEE
Confidence 8999999876532 233334444 56777788888877777777554 6555543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.024 Score=65.21 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhH----HHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVV----KESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v----~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++++|+|.|+.|..+|+.|. +.|++|+++|.++ +.. +++.+.+..++.+|..+. ..++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLK----------KLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------Hhhc
Confidence 457999999999999999998 8999999999985 333 445566888999998873 2467
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+|.||.+++....|- ....+|+.+ ++++.+
T Consensus 69 ~d~vv~~~g~~~~~~-~~~~a~~~~--i~~~~~ 98 (450)
T PRK14106 69 VDLVVVSPGVPLDSP-PVVQAHKKG--IEVIGE 98 (450)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC--CcEEeH
Confidence 899988887654444 556667754 566543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.079 Score=56.77 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=62.8
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC-----CCC-C
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG-----ITS-P 606 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag-----i~~-a 606 (791)
++|.|. |.+|+.+++.|. +.|++|.++..+++..+ ..+...+.+|.+|++.|+++= ++. +
T Consensus 2 ilVtGatG~iG~~vv~~L~----------~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQ----------AASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred EEEEcCCChHHHHHHHHHH----------hCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 567777 999999999998 78999999999987543 357778899999999998752 345 8
Q ss_pred cEEEEEeCCH----HHHHHHHHHHHHhCC
Q 003861 607 KAVMIMYTDK----KRTIEAVQRLRLAFP 631 (791)
Q Consensus 607 ~~viv~~~~d----~~n~~~~~~ar~l~p 631 (791)
|.++.+.++. +.-..++..+++.+.
T Consensus 69 d~v~~~~~~~~~~~~~~~~~i~aa~~~gv 97 (285)
T TIGR03649 69 SAVYLVAPPIPDLAPPMIKFIDFARSKGV 97 (285)
T ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCC
Confidence 8887665531 122234556676653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.13 Score=55.62 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=71.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+++.|. +.|++|.+.|.++++.+.+.+.+... .++.+-+ ++++|.++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~g~~~----~~~~~e~----~~~~d~vi~~ 65 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVYDRNPEAVAEVIAAGAET----ASTAKAV----AEQCDVIITM 65 (296)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCee----cCCHHHH----HhcCCEEEEe
Confidence 6899999999999999998 78999999999999998887766432 1222222 2579999999
Q ss_pred eCCHHHHHHHH---H-HHHHhCCCCcEEEEec--Chh----hHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~-~ar~l~p~~~iiara~--~~~----~~~~L~~~Gad~Vi~p 659 (791)
++++.....+. . .+....++ .+++-.. ++. -.+.+++.|++.+-.|
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 98765332222 1 23333444 4555433 332 2334556688766555
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.064 Score=59.37 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh--------------h-------hH----HHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------S-------VV----KESRKLG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~--------------~-------~v----~~~~~~~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. ++++||.|. + ++ +++++.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLV----------RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 568999999999999999998 7888 899999983 1 11 2223221
Q ss_pred ----CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 585 ----FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 585 ----~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
...+..|.+..+.. +. ++++|.||.++++.+....+...+++.+. ..|.+.
T Consensus 94 p~v~v~~~~~~~~~~~~~-~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~i-P~i~~~ 148 (339)
T PRK07688 94 SDVRVEAIVQDVTAEELE-EL-VTGVDLIIDATDNFETRFIVNDAAQKYGI-PWIYGA 148 (339)
T ss_pred CCcEEEEEeccCCHHHHH-HH-HcCCCEEEEcCCCHHHHHHHHHHHHHhCC-CEEEEe
Confidence 33455666654433 33 68899999999999999988888888762 235443
|
|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.2 Score=44.43 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHcCCChHHHHHHHHHhhcccCCcC--CchhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 003861 131 FKIARASPILGFFFAGIVLNQLGIIR--NLTDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 204 (791)
Q Consensus 131 ~~rl~lP~ivg~ilaGillGp~gli~--~~~~l----~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~ 204 (791)
....++|..+--|+.||++|.+...+ ...-+ +.+-++|+++ -|.+++++++.+.+...+.+....+..++
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t~ 107 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSSTF 107 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHHH
Confidence 34577999999999999999643221 11222 3556667665 58899999999999888877777666666
Q ss_pred HHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHH
Q 003861 205 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVL 258 (791)
Q Consensus 205 ~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~ 258 (791)
+....+ .-++| +++..++++|+--|....+.+.
T Consensus 108 ~~~~~l-------------g~~lg--------ld~~~a~Lia~GssICGasAia 140 (334)
T COG2855 108 LFAYFL-------------GKLLG--------LDKKLALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHHH-------------HHHhC--------CCHHHHHHHHccchhhHHHHHH
Confidence 554432 23666 7999999999766665444443
|
|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.66 Score=52.60 Aligned_cols=113 Identities=22% Similarity=0.195 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHH-HHHH
Q 003861 350 CLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPN-VLAL 426 (791)
Q Consensus 350 ~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~-~l~l 426 (791)
.++++....++.+.+|+++++|=.++|+++++. ..-.+..+.++-+.++=..++...+|++.|++.+.+.... ....
T Consensus 14 iL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~ 93 (397)
T COG0475 14 LLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGV 93 (397)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhH
Confidence 344455566899999999999999999999983 1122223344445555566677889999999999875444 2222
Q ss_pred HHHHHHHHHHHHHHhhh-hcCCCHHHHHHHHHHHhhh
Q 003861 427 LAGLIIIKTLIISAIGP-RVGLTLQESVRIGLLLSQG 462 (791)
Q Consensus 427 ~l~~ll~K~l~~~~~~~-~~~~~~r~~~~~g~~l~~r 462 (791)
....+..-+........ .+++++..++++|..++.-
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~s 130 (397)
T COG0475 94 AQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALS 130 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 22222222122211111 4789999999999876444
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.074 Score=58.80 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC----------HHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----------PAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~----------~~~L~~a 601 (791)
.+|.|+|.|.+|..++..|. +.|++|.++|.++. .+.+++.+..+...+..+ ....+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA----------AAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-- 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChh--
Confidence 36999999999999999998 78999999998764 466666665443211100 01112
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHHC
Q 003861 602 GITSPKAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~~ 651 (791)
.++++|.+++++..+.. ..++..++.. .++..++.-.+...+.+.+++.
T Consensus 70 ~~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~ 119 (341)
T PRK08229 70 ALATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAA 119 (341)
T ss_pred hccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHh
Confidence 25689999999887532 3344444443 4444444455555555555543
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.025 Score=55.23 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+.|+|||..|+.-+..|+ +.|.+|++-....+ ..+++++.|+.+.. ..+| +++||.|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLr----------DSG~~V~Vglr~~s~s~~~A~~~Gf~v~~--------~~eA-v~~aDvV 64 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLR----------DSGVNVIVGLREGSASWEKAKADGFEVMS--------VAEA-VKKADVV 64 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHH----------HCC-EEEEEE-TTCHHHHHHHHTT-ECCE--------HHHH-HHC-SEE
T ss_pred CCEEEEECCChHHHHHHHHHH----------hCCCCEEEEecCCCcCHHHHHHCCCeecc--------HHHH-HhhCCEE
Confidence 457999999999999999999 88999998887766 78889999987752 3333 5789999
Q ss_pred EEEeCCHHH-HHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEc
Q 003861 610 MIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~-n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~ 658 (791)
+++++|... -+.--.....+.|+ .+++-+. +-.+...--..++|.++.
T Consensus 65 ~~L~PD~~q~~vy~~~I~p~l~~G-~~L~fahGfni~~~~i~pp~~vdV~mv 115 (165)
T PF07991_consen 65 MLLLPDEVQPEVYEEEIAPNLKPG-ATLVFAHGFNIHYGLIKPPKDVDVIMV 115 (165)
T ss_dssp EE-S-HHHHHHHHHHHHHHHS-TT--EEEESSSHHHHCTTS---TTSEEEEE
T ss_pred EEeCChHHHHHHHHHHHHhhCCCC-CEEEeCCcchhhcCcccCCCCCeEEEE
Confidence 999987532 22223334444444 3444332 222333334456666544
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.13 Score=59.67 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++-++|+|.+|+.+|+.|. +.|++|+|.|.++++++.+.+. |...+.+ +.+++-+- .+++++|
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~----------~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v-~~l~~~d 74 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIA----------EKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFV-LSIQKPR 74 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHH-hcCCCCC
Confidence 36999999999999999998 8999999999999999887653 3221111 12222221 2567899
Q ss_pred EEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEecCh------hhHHHHHHCCCCeEEcC
Q 003861 608 AVMIMYTDKKRTIEAVQ-RLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 659 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~-~ar~l~p~~~iiara~~~------~~~~~L~~~Gad~Vi~p 659 (791)
.|+.+..+++.--.+.. .+..+.|+ .|++-..+. +..+.+++.|+..+=.|
T Consensus 75 vIi~~v~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 75 SVIILVKAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred EEEEECCCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 99999988764333322 23334444 566654432 33455677787765444
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.077 Score=55.87 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=55.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCC-HHHHHhcCCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASR-PAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~-~~~L~~agi~~a 606 (791)
.+.++|+|. |.+|+.+++.|. +.|++|+++..++++.+.... .+..++.||.+| ++.+.++-..++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~ 86 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLL----------AKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDS 86 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------hCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCC
Confidence 457899995 999999999998 789999999888877554332 357889999998 455544311478
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.++.+++
T Consensus 87 d~vi~~~g 94 (251)
T PLN00141 87 DAVICATG 94 (251)
T ss_pred CEEEECCC
Confidence 98887764
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.026 Score=61.13 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-+.++|||||..|+-+|..++ ..|.+|+|.|.||-+.-++.-+|+.|+.- ++| .+.+|.+|
T Consensus 209 GK~vVV~GYG~vGrG~A~~~r----------g~GA~ViVtEvDPI~AleA~MdGf~V~~m--------~~A-a~~gDifi 269 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLR----------GMGARVIVTEVDPIRALEAAMDGFRVMTM--------EEA-AKTGDIFV 269 (420)
T ss_pred CceEEEecccccchHHHHHhh----------cCCCeEEEEecCchHHHHHhhcCcEEEEh--------HHh-hhcCCEEE
Confidence 457999999999999999998 89999999999999988888889998872 221 24557666
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.+|++
T Consensus 270 T~TGn 274 (420)
T COG0499 270 TATGN 274 (420)
T ss_pred EccCC
Confidence 66665
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.037 Score=59.14 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CC----
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI---- 603 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi---- 603 (791)
.+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+.+...+.+|.+|++.++++ .+
T Consensus 4 ~k~vlItGasggiG~~la~~l~----------~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----------SDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 347888988 999999999998 8899999999999998888888889999999999866543 11
Q ss_pred -CCCcEEEEEe
Q 003861 604 -TSPKAVMIMY 613 (791)
Q Consensus 604 -~~a~~viv~~ 613 (791)
.+.|.+|-..
T Consensus 74 ~g~id~li~~A 84 (277)
T PRK05993 74 GGRLDALFNNG 84 (277)
T ss_pred CCCccEEEECC
Confidence 3567776653
|
|
| >COG0385 Predicted Na+-dependent transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=5.1 Score=43.67 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCH
Q 003861 160 DVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSI 239 (791)
Q Consensus 160 ~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~ 239 (791)
.++....+.+.+++|..|+.++.+++++..++.. .-+++...+++.+-.+ |.. +.+++ +.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~-~vligl~~qfvlmPll--------a~~-~~~~~----------~l 94 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPR-LVLIGLAAQFVLMPLL--------ALL-LAKLF----------PL 94 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchH-HHHHHHHHHHHHHHHH--------HHH-HHHHc----------CC
Confidence 3444568999999999999999999998655432 2233344444443332 211 12333 34
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 240 DEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 240 ~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
...+..|.++..+.|.-+....--.- .+.+ --..+..+.++.+.++++.-++
T Consensus 95 ~~~l~~Gl~ll~~~Pggv~S~~~t~l-AkGn-ValsV~~tsvStll~~f~tPll 146 (319)
T COG0385 95 PPELAVGLLLLGCCPGGVASNAMTYL-AKGN-VALSVCSTSVSTLLGPFLTPLL 146 (319)
T ss_pred CHHHHHhHHheeeCCCchhHHHHHHH-hcCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777665544444433222111 1111 1234455666677666555443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.1 Score=59.51 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh---cC------
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---AG------ 602 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~---ag------ 602 (791)
.++.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.....+.. ++.-++.+++ .|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La----------~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA----------SRQKQVIGVDINQHAVDTINRGEIHIV--EPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHCCCCCcC--CCCHHHHHHHHhhcCceeeec
Confidence 46999999999999999998 889999999999999998765443332 2222333321 12
Q ss_pred -CCCCcEEEEEeCCH
Q 003861 603 -ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 -i~~a~~viv~~~~d 616 (791)
.+++|.++++.+++
T Consensus 72 ~~~~aDvvii~vptp 86 (415)
T PRK11064 72 TPEPADAFLIAVPTP 86 (415)
T ss_pred ccccCCEEEEEcCCC
Confidence 45899999999874
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.12 Score=55.43 Aligned_cols=109 Identities=15% Similarity=0.021 Sum_probs=65.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++-|+|+|++|+.+++.|.+ ...+.+++ +.|.++++.+.+.+. +....+ ++.+-|. +++|+|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~--------~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~---~~~eell----~~~D~V 71 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDR--------GLPGLTLSAVAVRDPQRHADFIWGLRRPPPV---VPLDQLA----THADIV 71 (271)
T ss_pred eEEEEECccHHHHHHHHHHHh--------cCCCeEEEEEECCCHHHHHHHHHhcCCCccc---CCHHHHh----cCCCEE
Confidence 479999999999999999971 01467766 679999987766543 322122 3444442 468999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC-----hhhHHHHHHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-----MMHLLDLKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~-----~~~~~~L~~~Gad~Vi~ 658 (791)
+++++++.. ...+..+-+.+ .++++.... ++-.+..++.|+...+.
T Consensus 72 vi~tp~~~h-~e~~~~aL~aG--k~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 72 VEAAPASVL-RAIVEPVLAAG--KKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred EECCCcHHH-HHHHHHHHHcC--CcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 999998754 33333333443 355553221 22233345667754444
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.037 Score=58.01 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=52.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ 600 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++++.+.+++.+...+.+|.+|++.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELK----------RRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 46899998 999999999998 789999999999999888887788899999999877654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.054 Score=59.13 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=63.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----------hcCCCE------EEccCCCH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----------KLGFPI------LYGDASRP 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----------~~~~~~------v~GD~t~~ 595 (791)
+|.|+|.|.+|..++..|. +.|++|+++|.+++..+.++ +.|..- ..++.+-.
T Consensus 4 ~V~VIG~G~mG~~iA~~la----------~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~ 73 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFA----------RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT 73 (308)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE
Confidence 6899999999999999998 78999999999998877643 222100 00000000
Q ss_pred HHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
..+.+ -++++|.++.+++++. ....+...+++..++-.+++...+......+
T Consensus 74 ~~~~~-a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~l 126 (308)
T PRK06129 74 DSLAD-AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAF 126 (308)
T ss_pred CcHHH-hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHH
Confidence 11222 2468999999998873 3344444455555443455544443333333
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.099 Score=56.99 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=59.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
...++.|+|+|.+|+.+++.|. +.|.+|+++|.++.. +.+.+.|... .++.+.+. ..++|.|
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~----------~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDvV 96 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFV----------KQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDVV 96 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCEE
Confidence 4457999999999999999998 778999999998743 4455556532 23333221 1468999
Q ss_pred EEEeCCHHHHHHHHHHH--HHhCCCCcEEEEecC
Q 003861 610 MIMYTDKKRTIEAVQRL--RLAFPAIPIYARAQD 641 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~a--r~l~p~~~iiara~~ 641 (791)
+++++.+. ...+.... ..+.|+ .++.-+-+
T Consensus 97 ilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 97 LLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred EEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence 99998653 33333332 223444 35554444
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.046 Score=59.39 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.|+ +.|.+|++.|......+.+.+.|+.+. +-++. +++||.|+
T Consensus 16 gKtVGIIG~GsIG~amA~nL~----------d~G~~ViV~~r~~~s~~~A~~~G~~v~----sl~Ea-----ak~ADVV~ 76 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLR----------DSGVEVVVGVRPGKSFEVAKADGFEVM----SVSEA-----VRTAQVVQ 76 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHH----------HCcCEEEEEECcchhhHHHHHcCCEEC----CHHHH-----HhcCCEEE
Confidence 457999999999999999998 899999999865555555666666432 22222 36789999
Q ss_pred EEeCCHHH
Q 003861 611 IMYTDKKR 618 (791)
Q Consensus 611 v~~~~d~~ 618 (791)
+..++++.
T Consensus 77 llLPd~~t 84 (335)
T PRK13403 77 MLLPDEQQ 84 (335)
T ss_pred EeCCChHH
Confidence 99998543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.089 Score=56.84 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----------CCCEEEcc--------CC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----------GFPILYGD--------AS 593 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----------~~~~v~GD--------~t 593 (791)
++|.|+|.|.+|..+|..+. ..|++|+++|.|++.++++.+. +......+ .+
T Consensus 4 ~kIaViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA----------FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT 73 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE
Confidence 36999999999999999998 7899999999999987666432 01110000 00
Q ss_pred CHHHHHhcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~ 641 (791)
-.+.+++ .++++|.||.+++++.+ -..+...+.+..++-.+++...+
T Consensus 74 ~~~d~~~-a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 74 LTTDLAE-AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred EeCCHHH-HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 0011222 25789999999998632 22223334343333245554333
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=60.53 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---------------cCCCEEEccCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------------LGFPILYGDAS 593 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---------------~~~~~v~GD~t 593 (791)
..+.++|.|. |.+|+.+++.|. +.|++|++++.++++.+.+.+ ....++.||.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LL----------k~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELL----------KLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 3456888886 899999999998 789999999999988765432 12568999999
Q ss_pred CHHHHHhcCCCCCcEEEEEeCC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~ 615 (791)
|++.++++ ++++|+||.+.+.
T Consensus 149 D~esI~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 149 KPDQIGPA-LGNASVVICCIGA 169 (576)
T ss_pred CHHHHHHH-hcCCCEEEEcccc
Confidence 99988763 5678988877653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.11 Score=56.64 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=83.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccC----CCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA----SRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~----t~~~~L~~agi~~a~~ 608 (791)
++.|+|.|-+|...+-.|. +.|.+|+++-.++. ++++++.|..+...+. .....-.......+|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~----------~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 2 KILILGAGAIGSLLGARLA----------KAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred eEEEECCcHHHHHHHHHHH----------hCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCE
Confidence 5889999999999999998 78855555555554 8899988887776665 1122222334558999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCe
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATD 655 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~ 655 (791)
+|+++..-..+-.+....+...|+..|+.-.|--.+.+.+++.....
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 99998876555555566666777777888999999999998887776
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.049 Score=59.44 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=81.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHhc--------CCC-EEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL--------GFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~~--------~~~-~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|+.++..|. ..| .+++++|.|+++.+..... +.. .+.+ .+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~----------~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~~----- 64 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLV----------NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDYS----- 64 (306)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCHH-----
Confidence 6899999999999999997 667 5899999999986544321 122 1222 2332
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHHC-CC--CeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKKA-GA--TDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~~-Ga--d~Vi~p-~ 660 (791)
.+++||.+|++++. | ..|.. ++..+++.+|+..++. +.||.+.- .+.+. |- .+|+-. .
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~viv-vsNP~d~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV-ASNPVDVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-ecChHHHHHHHHHHHhCcCHHHEeeccc
Confidence 24799999998875 1 23544 3566677788765444 44554432 23332 33 345444 2
Q ss_pred HHHHHHHHHHHHhhcCCChHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
.+-..|+-..+-+.+++++..++
T Consensus 144 ~LDs~R~~~~la~~l~v~~~~v~ 166 (306)
T cd05291 144 SLDTARLRRALAEKLNVDPRSVH 166 (306)
T ss_pred hHHHHHHHHHHHHHHCCCcccce
Confidence 33345666666666777775544
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.094 Score=57.19 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=52.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.|+|+|.+|..+++.|. +.|+ +|.++|.+++..+.+++.|...... .+.++. ++++|.|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~----------~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~~~~~-----~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIR----------RLGLAGEIVGADRSAETRARARELGLGDRVT-TSAAEA-----VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCcEEEEEECCHHHHHHHHhCCCCceec-CCHHHH-----hcCCCEE
Confidence 47999999999999999998 6674 8999999999988888766432111 111222 3679999
Q ss_pred EEEeCCHH
Q 003861 610 MIMYTDKK 617 (791)
Q Consensus 610 iv~~~~d~ 617 (791)
|++++.+.
T Consensus 71 iiavp~~~ 78 (307)
T PRK07502 71 ILCVPVGA 78 (307)
T ss_pred EECCCHHH
Confidence 99998753
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.097 Score=57.59 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=65.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE--EEccCCC-----HHHHHhcCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI--LYGDASR-----PAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~--v~GD~t~-----~~~L~~agi~~ 605 (791)
++.|+|.|.+|..++..|. +.|++|.+++.|++.++.+++.+.+. ..+.... ...+.++--++
T Consensus 2 kI~IiGaGa~G~ala~~L~----------~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS----------SKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC
Confidence 4889999999999999998 78999999999999988887643222 1111000 01112221257
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEecChhh
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMMH 644 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~--l~p~~~iiara~~~~~ 644 (791)
+|.+++++.+... ..++..++. ..++..++.-.+--++
T Consensus 72 ~Dliiiavks~~~-~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVPTQQL-RTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeCHHHH-HHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 8999999987543 233444443 3555567776665544
|
|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.56 Score=55.70 Aligned_cols=113 Identities=16% Similarity=0.100 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhHhcCCccch---hHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHH
Q 003861 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 428 (791)
Q Consensus 352 ~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~---~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l 428 (791)
++......+++.+|++..++-.++|++++..... ..-.+..+.+..+..++.....|+++|++.+...+...+.+..
T Consensus 16 ~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~ 95 (562)
T PRK05326 16 LLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLAT 95 (562)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHH
Confidence 3344455688899999999999999999975211 0111234556778888888899999999999887766655544
Q ss_pred HHHHHHHHH-HHHhhhhcCCCHHHHHHHHHHHhhhhh
Q 003861 429 GLIIIKTLI-ISAIGPRVGLTLQESVRIGLLLSQGGE 464 (791)
Q Consensus 429 ~~ll~K~l~-~~~~~~~~~~~~r~~~~~g~~l~~rG~ 464 (791)
..++.-... .+...+.++.+|.+++.+|..+++-..
T Consensus 96 ~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 96 LGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 444443333 234445678999999999987666543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=56.40 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=60.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--cc-----CCCHHHHHhcCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GD-----ASRPAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--GD-----~t~~~~L~~agi~~ 605 (791)
++.|+|.|.+|..++..|. +.|++|.+++.++++.+.+.+.+.+..+ |. ..-.+.++++ +++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~----------~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~ 74 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAA----------SKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAG 74 (328)
T ss_pred eEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcC
Confidence 6999999999999999998 8899999999999988877754221111 10 0001112222 367
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
+|.|++++.++.. . ..++.+.|+..++.-.+
T Consensus 75 aD~Vi~~v~~~~~-~---~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 75 ADFAVVAVPSKAL-R---ETLAGLPRALGYVSCAK 105 (328)
T ss_pred CCEEEEECchHHH-H---HHHHhcCcCCEEEEEee
Confidence 9999999998742 1 22244555544444333
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.049 Score=51.41 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+-++-|+|.|++|..+++.|. +.|++|+.+.. +++..+++...--..-. . .+.+ -++++|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~----------~ag~~v~~v~srs~~sa~~a~~~~~~~~~---~---~~~~-~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALA----------RAGHEVVGVYSRSPASAERAAAFIGAGAI---L---DLEE-ILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHH----------HTTSEEEEESSCHH-HHHHHHC--TT-----------TTG-GGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCcccccccccccccccc---c---cccc-ccccCCE
Confidence 3558999999999999999998 88999998864 44456666543111111 1 1222 1478999
Q ss_pred EEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEec---ChhhHHHHHHCCC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQ---DMMHLLDLKKAGA 653 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~--l~p~~~iiara~---~~~~~~~L~~~Ga 653 (791)
++++++||...-.....+.. ..|+ ++++... +.+-.+-+++.|+
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred EEEEechHHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 99999998544333333322 2233 6777654 3344444566665
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.1 Score=53.27 Aligned_cols=81 Identities=11% Similarity=0.302 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHh
Q 003861 366 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAI 441 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~ 441 (791)
+-.+-|++++|++++..... + -..+++++..+|--.+|++.=++.+.+ . |...+ +.++.++.-.+.++..
T Consensus 35 LG~~~gvLfvgl~~G~~g~~--i---~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~-~a~~~~~~~~~~~~~~ 108 (562)
T TIGR03802 35 LGGVAGSLIVAVLIGQLGIQ--I---DPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREII-LALVFAVSGLITVYAL 108 (562)
T ss_pred cchHHHHHHHHHHHHhcCCC--C---ChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHH
Confidence 33356888999999875331 1 122577999999999999998877653 2 44333 3333444445566677
Q ss_pred hhhcCCCHHHH
Q 003861 442 GPRVGLTLQES 452 (791)
Q Consensus 442 ~~~~~~~~r~~ 452 (791)
.++++++...+
T Consensus 109 ~~~~g~~~~~~ 119 (562)
T TIGR03802 109 AKIFGLDKGTA 119 (562)
T ss_pred HHHhCCCHHHH
Confidence 77788876544
|
All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625). |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.14 Score=55.93 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=48.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++.|+|+|++|+.+++.|. +.|.++++. +.+++..+.+.+.|+.+. +..+. +++||.|+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~----------~sG~~Viv~~~~~~~~~~~a~~~Gv~~~----s~~ea-----~~~ADiVv 64 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLR----------DSGLNVIVGLRKGGASWKKATEDGFKVG----TVEEA-----IPQADLIM 64 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHH----------HCCCeEEEEECcChhhHHHHHHCCCEEC----CHHHH-----HhcCCEEE
Confidence 46899999999999999998 778887764 445566677766676421 12222 37789999
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++++++
T Consensus 65 LaVpp~ 70 (314)
T TIGR00465 65 NLLPDE 70 (314)
T ss_pred EeCCcH
Confidence 999976
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.25 Score=45.46 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=67.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|+.-.+.+.+ ...+.+++ +.|.|+++.+.+. +.+.+ .+.| -++.+++ ++.|+++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~--------~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR--------SSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH--------TTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHh--------cCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHh---hcCCEEE
Confidence 47899999999999988762 12455654 7799999988864 56777 5554 2344543 3899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDLK 649 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L~ 649 (791)
++++++. ....+..+-+.+ .+|++. +.+.+..+.+.
T Consensus 68 I~tp~~~-h~~~~~~~l~~g--~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 68 IATPPSS-HAEIAKKALEAG--KHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp EESSGGG-HHHHHHHHHHTT--SEEEEESSSSSSHHHHHHHH
T ss_pred EecCCcc-hHHHHHHHHHcC--CEEEEEcCCcCCHHHHHHHH
Confidence 9998754 455555565654 477775 44555555543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.016 Score=58.45 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=48.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC----------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG---------- 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag---------- 602 (791)
+|.|+|.|.+|..+|-.|. +.|++|+.+|.|+++++.+.+...+. .++..++.+++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA----------~~G~~V~g~D~~~~~v~~l~~g~~p~--~E~~l~~ll~~~~~~~~l~~t~~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALA----------EKGHQVIGVDIDEEKVEALNNGELPI--YEPGLDELLKENVSAGRLRATTD 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHH----------HTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESE
T ss_pred EEEEECCCcchHHHHHHHH----------hCCCEEEEEeCChHHHHHHhhccccc--cccchhhhhccccccccchhhhh
Confidence 5789999999999999998 89999999999999999988654444 2555566666443
Q ss_pred ----CCCCcEEEEEeCC
Q 003861 603 ----ITSPKAVMIMYTD 615 (791)
Q Consensus 603 ----i~~a~~viv~~~~ 615 (791)
++++|+++++.+.
T Consensus 70 ~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 IEEAIKDADVVFICVPT 86 (185)
T ss_dssp HHHHHHH-SEEEE----
T ss_pred hhhhhhccceEEEecCC
Confidence 4468888887754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.4 Score=51.45 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++.++|+|.+|..+++.|. +.| .++.+.|.++++.+.+.+ .|.... .+..+. ++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~----------~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~---~~~~e~-----~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI----------NKNIVSPDQIICSDLNVSNLKNASDKYGITIT---TNNNEV-----ANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHH----------HCCCCCCceEEEECCCHHHHHHHHHhcCcEEe---CCcHHH-----HhhC
Confidence 36899999999999999997 444 369999999999888765 564321 122233 3578
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHH
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~ 650 (791)
|.+++++..+ .-..+...++.. .++ .++...----..+.+++
T Consensus 65 DiIiLavkP~-~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 65 DILILSIKPD-LYSSVINQIKDQIKND-VIVVTIAAGKSIKSTEN 107 (272)
T ss_pred CEEEEEeChH-HHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHH
Confidence 9999998853 333333444442 333 45554444444444444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.15 Score=54.26 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=77.1
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+ |++|+.+++.+.+ ..+.+++ ++|.++++.+...+.+.. ..+|.+.+. +++|+++
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~---------~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVi 65 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEA---------AEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLI 65 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEE
Confidence 5899998 9999999999872 3466655 478888765443111111 123333332 3689887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHH--CCCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKK--AGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~--~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
..++.+ .....+..+.+.+ .+++.-. .+.++.+.+++ .++.-++.|+.-.+..+..++++
T Consensus 66 d~t~p~-~~~~~~~~al~~G--~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 66 DFTTPE-ATLENLEFALEHG--KPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred ECCCHH-HHHHHHHHHHHcC--CCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 666543 3355666666665 4555432 25666666654 57778999998777777777765
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.15 Score=55.55 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=51.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCC-----------EEEccCCCH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFP-----------ILYGDASRP 595 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~-----------~v~GD~t~~ 595 (791)
+++.|+|.|.+|..++..|. ..|++|+++|.+++..+.+.+. +.. -+... +|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~- 72 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA----------RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AG- 72 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CC-
Confidence 46899999999999999998 7899999999999988776542 210 01110 11
Q ss_pred HHHHhcCCCCCcEEEEEeCCHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~ 617 (791)
+++ .++++|.|+.++.++.
T Consensus 73 --~~~-~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 73 --LAA-AVSGADLVIEAVPEKL 91 (311)
T ss_pred --HHH-HhccCCEEEEeccCcH
Confidence 111 2578999999998864
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.11 Score=57.01 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=62.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|++|+.+++.|. .. +.+++++|.++++.+.+. +.+..++. .+.+.++ +.++|.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~----------~~g~~~V~v~~r~~~ra~~la~~~g~~~~~-----~~~~~~~-l~~aDv 241 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLA----------AKGVAEITIANRTYERAEELAKELGGNAVP-----LDELLEL-LNEADV 241 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHcCCeEEe-----HHHHHHH-HhcCCE
Confidence 457999999999999999997 44 468999999999876654 44543332 2234333 577999
Q ss_pred EEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 609 VMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 609 viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
++.+++.++. +.... ..+....+-.+++....+.+
T Consensus 242 Vi~at~~~~~~~~~~~-~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 242 VISATGAPHYAKIVER-AMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred EEECCCCCchHHHHHH-HHhhCCCCCeEEEEeCCCCC
Confidence 9999998765 22221 12222112346666555544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.21 Score=53.24 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=62.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---CcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++.|+|+|.+|..+++.|. +.| .++.++|.+++..+++.+. +..+. .+..+. ++++|.
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~adv 65 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLL----------ASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADV 65 (267)
T ss_pred EEEEEechHHHHHHHHHHH----------hCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCE
Confidence 5899999999999999997 566 7899999999998888764 54321 122222 357899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
|++++..+ ....++..++... +..|+.-.+.- ..+.+++
T Consensus 66 Vil~v~~~-~~~~v~~~l~~~~-~~~vvs~~~gi-~~~~l~~ 104 (267)
T PRK11880 66 VVLAVKPQ-VMEEVLSELKGQL-DKLVVSIAAGV-TLARLER 104 (267)
T ss_pred EEEEcCHH-HHHHHHHHHHhhc-CCEEEEecCCC-CHHHHHH
Confidence 99998764 3334444444432 32344433333 3334443
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.074 Score=57.56 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
+++.|+|.|.+|..++..|. ..|++|+++|.|++.++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA----------RTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHH
Confidence 46999999999999999998 8899999999999988754
|
|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.46 Score=56.16 Aligned_cols=84 Identities=19% Similarity=0.429 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCh----HHHHHHHHHhhcc----cCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 121 LAVTVIVVPVFKIARASP----ILGFFFAGIVLNQ----LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 121 L~~a~l~~~l~~rl~lP~----ivg~ilaGillGp----~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
+.++..++.+.-|++++. +.|-+++|+++|. +|..-+.....++.++|+.+++|..|++--++.+...++..
T Consensus 11 l~l~i~lG~~lG~i~i~g~~LG~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G 90 (552)
T PRK03818 11 LALVAVVGLWIGNIKIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSG 90 (552)
T ss_pred HHHHHHHHHhhcceEECCCccccHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhh
Confidence 444445555554544332 3799999999998 56533556777899999999999999999988776665544
Q ss_pred HHHHHHHHHHHH
Q 003861 193 FGMGLTQVVLST 204 (791)
Q Consensus 193 ~~la~~~~llt~ 204 (791)
+.+...+++++.
T Consensus 91 ~~~~~~~~~~~~ 102 (552)
T PRK03818 91 LRLNLFAVLIVI 102 (552)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.4 Score=52.12 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred ChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---h-hHHHHHHHHHHHHHHHHHHHHh
Q 003861 366 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---E-WPNVLALLAGLIIIKTLIISAI 441 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~-~~~~l~l~l~~ll~K~l~~~~~ 441 (791)
+...-|++++|++++..... .-...+++...+|...+|++.-++.+.. . +... ++.++.++.-.+.++..
T Consensus 37 LG~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~ 110 (558)
T PRK04972 37 LGNSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYL-MLALVMVGSALVIALGL 110 (558)
T ss_pred cCcchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 33455788888888875321 1223367999999999999988766543 2 2222 22333334444455566
Q ss_pred hhhcCCCHHHH
Q 003861 442 GPRVGLTLQES 452 (791)
Q Consensus 442 ~~~~~~~~r~~ 452 (791)
.+++|+++-..
T Consensus 111 ~~~~~~~~~~~ 121 (558)
T PRK04972 111 GKLFGWDIGLT 121 (558)
T ss_pred HHHhCCCHHHH
Confidence 67788876643
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.082 Score=56.69 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=58.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|..+++.|. +.|+ +|+++|.+++..+.+.+.|.... .++. +++ .++|.||
T Consensus 2 ~I~iIG~G~mG~sla~~l~----------~~g~~~~v~~~d~~~~~~~~~~~~g~~~~---~~~~---~~~--~~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK----------EKGLISKVYGYDHNELHLKKALELGLVDE---IVSF---EEL--KKCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCCEEEEEcCCHHHHHHHHHCCCCcc---cCCH---HHH--hcCCEEE
Confidence 4789999999999999998 6675 68888999999988887665311 1122 222 2499999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
++++.+...- .+..++.+.++ .++.-+.
T Consensus 64 lavp~~~~~~-~~~~l~~l~~~-~iv~d~g 91 (275)
T PRK08507 64 LAIPVDAIIE-ILPKLLDIKEN-TTIIDLG 91 (275)
T ss_pred EeCcHHHHHH-HHHHHhccCCC-CEEEECc
Confidence 9998764332 33333334444 3555443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.069 Score=56.79 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC------CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG------IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag------i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+.+.+++.+|.+|++.++++- ..
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLA----------AQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46888886 899999999998 78999999999999888777778899999999999876541 23
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
..|.+|-..+
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6788876654
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.082 Score=61.61 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|+.|...++.|. ..|.+|++.|.+++..+.+++.|...+.++-. ++.+ +++|.||
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~----------~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~-~~~l-----~~~D~VV 75 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALT----------RFGARPTVCDDDPDALRPHAERGVATVSTSDA-VQQI-----ADYALVV 75 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHhCCCEEEcCcch-HhHh-----hcCCEEE
Confidence 457999999999999999998 89999999998888777777778777655432 3333 5678777
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
...+-+..| -....+|+.+ ++|+-+.
T Consensus 76 ~SpGi~~~~-p~~~~a~~~g--i~v~~~i 101 (488)
T PRK03369 76 TSPGFRPTA-PVLAAAAAAG--VPIWGDV 101 (488)
T ss_pred ECCCCCCCC-HHHHHHHHCC--CcEeeHH
Confidence 766555444 3456667654 5666543
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.093 Score=58.61 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=56.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|.|.+|..+++.|. +.|+++.+.|.|++..+.....+..+..-..++ +++ -++++|.||++
T Consensus 2 ~I~iIG~GliG~siA~~L~----------~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVila 67 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIK----------AAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLA 67 (359)
T ss_pred eEEEEEeCHHHHHHHHHHH----------hcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEe
Confidence 5889999999999999998 889999999999887665554444333211122 222 25789999999
Q ss_pred eCCHHHHHHHHHHHH
Q 003861 613 YTDKKRTIEAVQRLR 627 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar 627 (791)
++.+. ...++..++
T Consensus 68 vP~~~-~~~vl~~l~ 81 (359)
T PRK06545 68 VPVDA-TAALLAELA 81 (359)
T ss_pred CCHHH-HHHHHHHHh
Confidence 98753 344444444
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.29 Score=55.31 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=49.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH------------h
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------S 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~------------~ 600 (791)
+|.|+|.|.+|..+|..+. .|++|+++|.|+++++.+.+.-.+. + +..-++.++ .
T Consensus 2 kI~VIGlGyvGl~~A~~lA-----------~G~~VigvD~d~~kv~~l~~g~~~~-~-e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-----------QNHEVVALDILPSRVAMLNDRISPI-V-DKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-----------hCCcEEEEECCHHHHHHHHcCCCCC-C-CcCHHHHHHhCCCcEEEecchh
Confidence 4789999999999998774 4999999999999999887632221 1 110001110 0
Q ss_pred cCCCCCcEEEEEeCCH
Q 003861 601 AGITSPKAVMIMYTDK 616 (791)
Q Consensus 601 agi~~a~~viv~~~~d 616 (791)
.-++++|.++++++++
T Consensus 69 ~~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 69 EAYRDADYVIIATPTD 84 (388)
T ss_pred hhhcCCCEEEEeCCCC
Confidence 1147899999999865
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.18 Score=48.34 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=59.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh--------------hh-----H----HHHHhc--CCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------SV-----V----KESRKL--GFP 586 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~--------------~~-----v----~~~~~~--~~~ 586 (791)
+++|+|+|..|..+++.|. ..|. +++++|.|. +. + +++++. ...
T Consensus 1 ~VliiG~GglGs~ia~~L~----------~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~ 70 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA----------RSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN 70 (143)
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence 5899999999999999998 7887 699999882 21 1 222221 222
Q ss_pred --EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 587 --ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 587 --~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+..+.+++.. ..-++++|.+|.+.++.+....+...+|+.+ ++.+.
T Consensus 71 i~~~~~~~~~~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~ 119 (143)
T cd01483 71 VTAVPEGISEDNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVID 119 (143)
T ss_pred EEEEeeecChhhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 33344444332 2334688988888887666667777788764 45443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=52.66 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=60.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.++++|+|. |.+|+.+++.|. +.|.+|++++.++++.+.+.+ .+..+...|..+.+.+.+ -+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~----------~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLA----------REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAA-AIK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHH-HHh
Confidence 357999996 999999999998 788999999999988766543 256677788888776654 336
Q ss_pred CCcEEEEEeCCHHH
Q 003861 605 SPKAVMIMYTDKKR 618 (791)
Q Consensus 605 ~a~~viv~~~~d~~ 618 (791)
++|.++.+++....
T Consensus 97 ~~diVi~at~~g~~ 110 (194)
T cd01078 97 GADVVFAAGAAGVE 110 (194)
T ss_pred cCCEEEECCCCCce
Confidence 78988888876654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.1 Score=56.05 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=58.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH--HHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~--~~L~~agi~~a~~ 608 (791)
..+++|+|+|.+|..+++.|+ +.|+.+.+++.|.+.-...+.... +..|+ +......+.+||.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~----------~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~~~aD~ 67 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALK----------EAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAAAEADL 67 (279)
T ss_pred CcEEEEECCchHHHHHHHHHH----------HcCCeEEEEeecCcHHHHHHHhhc-----CcccccccchhhhhcccCCE
Confidence 458999999999999999999 899999888777766444333222 22222 1122345678999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
||++++=....-.+...+..+-++ .++.-+.
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g-~iv~Dv~ 98 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKG-AIVTDVG 98 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCC-CEEEecc
Confidence 999998644333333333333333 3444433
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.18 Score=51.93 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=66.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.++|+|.|..|..=++.|. +.|.+++|+-.+. +..+.+.+ .....+. +.-+++-+. +++.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll----------~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-----~~~l 75 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLL----------KAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-----DAFL 75 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-----CceE
Confidence 347999999999999999998 8999999997776 44555443 3445555 555555553 3999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
++++|+|.+.|-.+...|++.+
T Consensus 76 viaAt~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 76 VIAATDDEELNERIAKAARERR 97 (210)
T ss_pred EEEeCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999975
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.24 Score=50.70 Aligned_cols=89 Identities=18% Similarity=0.079 Sum_probs=60.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhHH----HHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVK----ESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v~----~~~~--~ 583 (791)
.+.+|+|+|+|..|..+++.|. ..|. +++++|.|. .+++ ++++ .
T Consensus 20 ~~~~VlviG~GglGs~ia~~La----------~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA----------GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 3568999999999999999998 7887 799999982 2222 2222 1
Q ss_pred CCC--EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 584 GFP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 584 ~~~--~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
... .+..+.++ +.+.+ -++++|.||.++++-+.-..+...+++.+
T Consensus 90 ~v~i~~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 90 DIQVTALKERVTA-ENLEL-LINNVDLVLDCTDNFATRYLINDACVALG 136 (202)
T ss_pred CCEEEEehhcCCH-HHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 222 22233332 33322 35789999888888777777777888875
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
Probab=94.56 E-value=10 Score=42.64 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=58.3
Q ss_pred HhCChHHHHHHHHhHhcCCc----cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHH-HHHHHHHHHHH
Q 003861 363 KLGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL-LAGLIIIKTLI 437 (791)
Q Consensus 363 ~lGls~~LgAflaGl~l~~~----~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l-~l~~ll~K~l~ 437 (791)
.+.++...++++.|+++.|. +..+--.+.++.+.++..-+|-++.=+++++..+.+.+...+.+ ++..++.-...
T Consensus 244 ~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 244 GLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999984 11121122344556777777767777789999998876655543 33333334445
Q ss_pred HHHhhhhcCCCHHHHHH
Q 003861 438 ISAIGPRVGLTLQESVR 454 (791)
Q Consensus 438 ~~~~~~~~~~~~r~~~~ 454 (791)
.+...+.+|.++..+..
T Consensus 324 ~fv~fr~~gkdydaavm 340 (368)
T PF03616_consen 324 YFVTFRVMGKDYDAAVM 340 (368)
T ss_pred HHHhhhhhCCChhHHHH
Confidence 55666778888755443
|
The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.076 Score=51.97 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=50.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-----------EEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-----------v~GD~t~~~~L~~a 601 (791)
++.|||.|.+|..+|..|. ++|++|.+.+.|++.++.+.+.+.+. +.. -+|.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la----------~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~----~ 65 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA----------DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE----E 65 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH----H
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH----H
Confidence 3789999999999999998 89999999999999998887643211 111 12321 1
Q ss_pred CCCCCcEEEEEeCCHHH
Q 003861 602 GITSPKAVMIMYTDKKR 618 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~ 618 (791)
-+++||.++++++....
T Consensus 66 a~~~ad~IiiavPs~~~ 82 (157)
T PF01210_consen 66 ALEDADIIIIAVPSQAH 82 (157)
T ss_dssp HHTT-SEEEE-S-GGGH
T ss_pred HhCcccEEEecccHHHH
Confidence 23678999999988654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.59 Score=54.99 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHH
Q 003861 352 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLI 431 (791)
Q Consensus 352 ~~~~~~~~la~~lGls~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~l 431 (791)
+.+.+...+++.+++++.++-.++|++++..+....+.-.-+.+..++.|......|+++|+..+..++..+..+.+..+
T Consensus 8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~v 87 (525)
T TIGR00831 8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLV 87 (525)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444556888999999999999999998542221111011123457888888899999999999888777666555555
Q ss_pred HHHHHHHHHhh-hhcCCCHHHHHHHHHHHhhhhhHHH
Q 003861 432 IIKTLIISAIG-PRVGLTLQESVRIGLLLSQGGEFAF 467 (791)
Q Consensus 432 l~K~l~~~~~~-~~~~~~~r~~~~~g~~l~~rG~~~l 467 (791)
++-.+.+.... +..+++|..++.+|..+++-...+.
T Consensus 88 lit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 88 VVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 54444433333 3578999999999999888876553
|
This model is specific for the bacterial members of this family. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.12 Score=54.03 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=72.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcC----------ChhhHHHHHhcCCCEE-E--cc-CCCH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDL----------NPSVVKESRKLGFPIL-Y--GD-ASRP 595 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~----------d~~~v~~~~~~~~~~v-~--GD-~t~~ 595 (791)
..+++|.|+|.+|+.+++.|. +.|..|+ +.|. |++.+.+..+..-... + +. .+..
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~----------~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~ 100 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLH----------EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNE 100 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCc
Confidence 468999999999999999998 7899999 7788 8887776644321111 1 11 1222
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCcH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.+. .++|.++=++..+..|-. ++.++. +++|+..- +++..+.|++-|+-. .|..
T Consensus 101 ~i~~----~~~Dvlip~a~~~~i~~~---~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi~~--~PD~ 159 (227)
T cd01076 101 ELLE----LDCDILIPAALENQITAD---NADRIK--AKIIVEAANGPTTPEADEILHERGVLV--VPDI 159 (227)
T ss_pred ccee----ecccEEEecCccCccCHH---HHhhce--eeEEEeCCCCCCCHHHHHHHHHCCCEE--EChH
Confidence 3332 278988777766544444 444443 67777543 366889999998854 4764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.21 Score=57.70 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=63.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|+++..=++.|. +.|.+|+||-. +++.-+...+..+..+..+..+. .+++++.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll----------~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~------dl~~~~l 75 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLL----------DAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDES------LLDTCWL 75 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCEE
Confidence 458999999999999888887 78999999843 44433322333466666665433 2468899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
|+++|+|.+.|-.+...+|+.+
T Consensus 76 v~~at~d~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 76 AIAATDDDAVNQRVSEAAEARR 97 (457)
T ss_pred EEECCCCHHHhHHHHHHHHHcC
Confidence 9999999999999999999874
|
|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.1 Score=55.58 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhHhcCCccch--hH---------HHHhhhchHhHHHHHHHHHHcccCChHHHHhhhH
Q 003861 354 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQ---------IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP 421 (791)
Q Consensus 354 ~~~~~~la~~lGls~~LgAflaGl~l~~~~~~--~~---------i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~ 421 (791)
.-...++...+|.+.++|=.++|++++.+-.. +. -...++.+..+-..+|...+|+++|++.+.....
T Consensus 55 a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 55 TRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 33455677888999999999999999864111 11 1123555666777778888999999999876533
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.33 Score=53.13 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--ccCCC--HHHHHh-cCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDASR--PAVLLS-AGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--GD~t~--~~~L~~-agi~~a 606 (791)
.+|.|+|.|.+|..++..|. +.|++|+++..++. +..++.|...-. |+... ..+... ...+.+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~----------~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLA----------RAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC 73 (313)
T ss_pred cEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence 47999999999999999998 78999999998863 445555544322 21100 000000 124678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC-CCCeEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA-GATDAI 657 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~-Gad~Vi 657 (791)
|.+++++..... ..+...++. ..++..++.-.|--.+.+.+.+. +-.+|+
T Consensus 74 D~vilavK~~~~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 74 DWVLVGLKTTAN-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLL 125 (313)
T ss_pred CEEEEEecCCCh-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEE
Confidence 999999876432 333444444 45666677788877787777654 544444
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.28 Score=52.73 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=34.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~ 579 (791)
++.|+|.|.+|..++..+. ..|++|+++|.|++.+++
T Consensus 5 kI~VIG~G~mG~~ia~~la----------~~g~~V~~~d~~~~~~~~ 41 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA----------VAGYDVVMVDISDAAVDR 41 (282)
T ss_pred EEEEEccCHHHHHHHHHHH----------HCCCceEEEeCCHHHHHH
Confidence 6899999999999999998 789999999999998853
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.11 Score=59.95 Aligned_cols=90 Identities=19% Similarity=0.253 Sum_probs=64.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.+++.|+|+|+.|..+++.|. +.|++|.+.|.++. ..+++++.|..+..|+.. ++-+ .+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~ 77 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLV----------KLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DG 77 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHH----------HCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----cc
Confidence 347999999999999999998 89999999997753 234577778888887654 3323 56
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+|.||++.+=+.+| .....+|+.+ ++|+.+.
T Consensus 78 ~dlVV~Spgi~~~~-p~~~~a~~~~--i~i~s~~ 108 (458)
T PRK01710 78 FDVIFKTPSMRIDS-PELVKAKEEG--AYITSEM 108 (458)
T ss_pred CCEEEECCCCCCCc-hHHHHHHHcC--CcEEech
Confidence 88776664333333 4567777765 7787544
|
|
| >PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.1 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 167 WGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
+.+.+++|..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4678999999999999999988766433
|
They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.16 Score=52.20 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=58.1
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CC--CCCc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI--TSPK 607 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi--~~a~ 607 (791)
.++|.| .|.+|+.+++.|. +.|++|++++.+++..+++++.+...+.+|.+|++.++++ .+ .+.|
T Consensus 3 ~vlvtG~sg~iG~~la~~L~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYR----------ADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcCCCchhHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 466776 5899999999998 7899999999999988888777788899999999988774 23 3578
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.++-..
T Consensus 73 ~vi~~a 78 (222)
T PRK06953 73 AAVYVA 78 (222)
T ss_pred EEEECC
Confidence 776654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.46 Score=57.41 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=66.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.++.|+|+|.+|+.+++.|. +.|++|+++|.+++. +.+.+.|... .++.+-+.+ +++|.|
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~a~~~Gv~~----~~~~~el~~---~~aDvV 429 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMV----------KQGHTVLAYSRSDYS-DEAQKLGVSY----FSDADDLCE---EHPEVI 429 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHH----------HCcCEEEEEECChHH-HHHHHcCCeE----eCCHHHHHh---cCCCEE
Confidence 4457999999999999999998 788999999998654 5555666532 123332211 358999
Q ss_pred EEEeCCHHHHHHHHHHHHH--hCCCCcEEEEecCh--hhHHHHHH---CCCCeE
Q 003861 610 MIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDM--MHLLDLKK---AGATDA 656 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~--l~p~~~iiara~~~--~~~~~L~~---~Gad~V 656 (791)
+++++.+ ....++..... +.|+ .+++-+.+- ...+.+++ .|.+.|
T Consensus 430 ILavP~~-~~~~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 430 LLCTSIL-STEKVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred EECCChH-HHHHHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 9999864 33333333332 3344 466655333 23333333 355554
|
|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.6 Score=47.64 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHH--cCCChHHHHHHHHHhhccc----CCc-CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 120 FLAVTVIVVPVFKI--ARASPILGFFFAGIVLNQL----GII-RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 120 lL~~a~l~~~l~~r--l~lP~ivg~ilaGillGp~----gli-~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
.+.++..+....+. +.+|..++.+++|+++.+. +.. -.++.++.++++++-+++-.+=+.+++..+.+..-+.
T Consensus 227 ai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Pl 306 (398)
T TIGR00210 227 CLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPI 306 (398)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455555555554 7799999999999999872 221 1345899999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHH----HHHHHhhhccHHHHH--HHHHhcCC
Q 003861 193 FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAV----VIGAALSLSSSAFVL--QLLAEKGE 266 (791)
Q Consensus 193 ~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~al----llga~ls~TS~avv~--~lL~e~~~ 266 (791)
+.+...|++++.+....+ ...++| .+...|. .+|..+..|.+++.. .+-+++|.
T Consensus 307 liil~~q~i~~~l~~~fv------------~fr~mg--------~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~ 366 (398)
T TIGR00210 307 ALILLVQVMFMALYAIFV------------TFRLMG--------KDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP 366 (398)
T ss_pred HHHHHHHHHHHHHHHHHH------------hHHhcc--------chHHHHHHhcccccccccchHHHHHHHHHHHhccCC
Confidence 999999999987665544 234555 2444444 466777777666654 34555665
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHHHHH
Q 003861 267 LPTRFGSATLGILLLQDIAVVPLLVIL 293 (791)
Q Consensus 267 ~~~~~g~l~l~~~~l~Di~~v~~l~i~ 293 (791)
.++-+=-.=+-.+.+-|+...+.+..+
T Consensus 367 s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 367 SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 444333333344677777766655543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.2 Score=54.95 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCCE--EEccCCCHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPI--LYGDASRPAVL 598 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~~--v~GD~t~~~~L 598 (791)
+++.|+|.|.+|..+|..+. ..|++|++.|.+++..+++++ .+... ..+..+-...+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a----------~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL----------AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 46999999999999999998 899999999999987655432 22110 00011111123
Q ss_pred HhcCCCCCcEEEEEeCCHHH--HHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKR--TIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~--n~~~~~~ar~l~p~~~iiara~~~~~~~~L~ 649 (791)
+ ..+++||.|+-+..++.+ ........+...|++ |++...+.-....+.
T Consensus 78 ~-~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la 128 (321)
T PRK07066 78 E-ACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFY 128 (321)
T ss_pred H-HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHH
Confidence 3 246899999999887632 222233444445554 777666655555554
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.39 Score=49.10 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=31.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN 573 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d 573 (791)
.+.+|.|+|+|.+|..++..|. ..|. +++++|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La----------~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLA----------RAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCC
Confidence 3568999999999999999998 7898 59999999
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=54.44 Aligned_cols=108 Identities=17% Similarity=0.261 Sum_probs=70.9
Q ss_pred HHHHHHhCChHHHHHHHHhHhcCCccch--hHH-----HHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHH
Q 003861 358 SLLTQKLGFSDTLGAFLAGAILAETNFR--TQI-----EADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 430 (791)
Q Consensus 358 ~~la~~lGls~~LgAflaGl~l~~~~~~--~~i-----~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ 430 (791)
.++.+.+.++..+-+.++|++++..... +.. ......+..+..++--...|+.++...+...|..++.++...
T Consensus 30 ~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~ 109 (810)
T TIGR00844 30 LFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV 109 (810)
T ss_pred HHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 3445555566666666666665542110 000 011111566778888889999999999998888877766666
Q ss_pred HHHHHHHHHHhhhh--cCCCHHHHHHHHHHHhhhhhH
Q 003861 431 IIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEF 465 (791)
Q Consensus 431 ll~K~l~~~~~~~~--~~~~~r~~~~~g~~l~~rG~~ 465 (791)
+.+-++++.+++++ .+++|..++.+|..++|-.-+
T Consensus 110 M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 110 MTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 66666666665553 499999999999988876643
|
This model is specific for the fungal members of this family. |
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.48 Score=56.15 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHH-----cCCChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHH
Q 003861 121 LAVTVIVVPVFKI-----ARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGM 195 (791)
Q Consensus 121 L~~a~l~~~l~~r-----l~lP~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~l 195 (791)
+++...++.+.-| +++-.+.|-+++|+++|.+|.- - -+.+.++|+++++|.+|++.-++.++..+|..+..
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i---~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~ 90 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I---DPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLRE 90 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C---ChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHH
Confidence 3344445555544 5566788999999999998762 1 12377899999999999999998887777665555
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcC
Q 003861 196 GLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG 265 (791)
Q Consensus 196 a~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~ 265 (791)
....+++........ ..+.+++|.+ .+....++-|+.-+..+.+.....+.+.+
T Consensus 91 ~~~a~~~~~~~~~~~----------~~~~~~~g~~------~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 91 IILALVFAVSGLITV----------YALAKIFGLD------KGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHhCCC------HHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 555544443322221 1135677732 13345555555444444455555665554
|
All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625). |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.78 Score=49.48 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=61.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|.++++.|. ..|. .++++|.|.-....+ +.++... + ..+
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLa----------laGVg~itI~D~d~ve~snL---~rqf~~~----~-----~dI------ 70 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLI----------LAGVKSVTLHDTKPCSWSDL---SSQFYLR----E-----EDI------ 70 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHH----------HcCCCeEEEEcCCccchhhc---ccCccCC----h-----HHh------
Confidence 568999999999999999998 7777 588999886543322 2222211 0 011
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+ ....-.+...++++||.++|-+...+ ...+.+.+ .|.||.-.
T Consensus 71 ----G-k~Kaea~~~~L~eLNp~V~V~~~~~~-~~~~~l~~--fdvVV~~~ 113 (286)
T cd01491 71 ----G-KNRAEASQARLAELNPYVPVTVSTGP-LTTDELLK--FQVVVLTD 113 (286)
T ss_pred ----C-HHHHHHHHHHHHHHCCCCEEEEEecc-CCHHHHhc--CCEEEEec
Confidence 1 12344567789999999998776544 33455544 56666544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.44 Score=51.60 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 579 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~ 579 (791)
++|.|+|.|.+|..++..|. ..|++|+++|.+++..++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~----------~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA----------AAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHH
Confidence 36999999999999999998 789999999999988764
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.07 Score=58.01 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=56.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++|.|. |-+|+.+++.|. +.|++|++++.+++..+...+.+..++.+|.+|++.++++ ++++|.++-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~ 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLL----------EQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFH 70 (328)
T ss_pred eEEEECCccchhHHHHHHHH----------HCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4677875 999999999998 7899999999988775555555788999999999988764 346777765
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
+.
T Consensus 71 ~a 72 (328)
T TIGR03466 71 VA 72 (328)
T ss_pred ec
Confidence 54
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.17 Score=52.92 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=58.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++++|.|. |.+|+.+++.|. +.|++|++.+.+++..+.+++ .+..++.+|.+|++.++++--.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLA----------RKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 46888887 799999999998 889999999998877655432 2467889999999999887445
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
+.|.+|-+.+
T Consensus 73 ~id~vi~~ag 82 (257)
T PRK09291 73 DVDVLLNNAG 82 (257)
T ss_pred CCCEEEECCC
Confidence 7888877543
|
|
| >PRK05274 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.25 Score=54.20 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=72.2
Q ss_pred HHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCHH
Q 003861 371 GAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQ 450 (791)
Q Consensus 371 gAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~~~~~r 450 (791)
.+++.|+.++| ..+++++...+--.+++|++-...|..+|++++...-+..+++.+..+++.....++..++++....
T Consensus 178 lplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g 255 (326)
T PRK05274 178 LPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNG 255 (326)
T ss_pred HHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCC
Confidence 68899999998 3344555555555679999999999999999886542223333344445555555666676643222
Q ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHcC---CcchhhhhHHHHHHHHHHHhHhHHHHH
Q 003861 451 ---ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEI 504 (791)
Q Consensus 451 ---~~~~~g~~l~~rG~~~lvla~~a~~~g---~i~~~~~~~iv~~vvlt~iltpll~~l 504 (791)
.+...+.+ .-...-+..+.-.. -..+.....+..++++|+++.|++..+
T Consensus 256 ~~g~a~~ttaG-----~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 256 VAGAAAGSTAG-----NAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred cchHHHHHHHH-----HHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 11111111221122 223333344455667899999999774
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.14 Score=58.34 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=51.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHH---------------H
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---------------V 597 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~---------------~ 597 (791)
++.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+...+. + ++.-++ .
T Consensus 2 kI~vIGlG~~G~~lA~~La----------~~G~~V~~~d~~~~~v~~l~~g~~~~-~-e~~l~~~~~~~~~~g~l~~~~~ 69 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA----------DLGHEVTGVDIDQEKVDKLNKGKSPI-Y-EPGLDELLAKALAAGRLRATTD 69 (411)
T ss_pred EEEEECCCchhHHHHHHHH----------hcCCeEEEEECCHHHHHHhhcCCCCC-C-CCCHHHHHHHhhhcCCeEEECC
Confidence 4789999999999999998 89999999999999998876422211 1 111111 1
Q ss_pred HHhcCCCCCcEEEEEeCCH
Q 003861 598 LLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d 616 (791)
.++ -++++|.++++.+++
T Consensus 70 ~~~-~~~~advvii~vpt~ 87 (411)
T TIGR03026 70 YED-AIRDADVIIICVPTP 87 (411)
T ss_pred HHH-HHhhCCEEEEEeCCC
Confidence 111 146799999998875
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.18 Score=53.58 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=59.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc------CCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GITS 605 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi~~ 605 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+.+...+.+|.+|++.++++ ...+
T Consensus 3 ~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFK----------AAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5778876 889999999998 8899999999999988887777888899999998877653 2356
Q ss_pred CcEEEEEeC
Q 003861 606 PKAVMIMYT 614 (791)
Q Consensus 606 a~~viv~~~ 614 (791)
.|.+|-..+
T Consensus 73 id~vi~~ag 81 (274)
T PRK05693 73 LDVLINNAG 81 (274)
T ss_pred CCEEEECCC
Confidence 788777664
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.49 Score=51.18 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=35.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
++|.|+|.|.+|..++..|. ..|++|++.|.|++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA----------LAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHH
Confidence 46999999999999999998 88999999999999877643
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.17 Score=58.72 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=62.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++++|+|.|..|..+|+.|. +.|.+|+++|.+++ ..+.+++.|..+..|+... -..+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALL----------ELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCC
Confidence 457999999999999999998 89999999996542 2345677899888876543 2356
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
+|.||++.+-...| .....+++.+ ++++
T Consensus 79 ~D~Vv~s~Gi~~~~-~~~~~a~~~g--i~v~ 106 (480)
T PRK01438 79 TDLVVTSPGWRPDA-PLLAAAADAG--IPVW 106 (480)
T ss_pred CCEEEECCCcCCCC-HHHHHHHHCC--Ceec
Confidence 89888887654433 3455566654 5554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.33 Score=55.69 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=62.5
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-HhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+| +|.+|..+++.|. +.|++|.++|.|++..++. .+.|..+ .++.+ + -++++|.|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~----------~~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~---e-~~~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLK----------EKGFEVIVTGRDPKKGKEVAKELGVEY----ANDNI---D-AAKDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHcCCee----ccCHH---H-HhccCCEEE
Confidence 478997 8999999999998 7899999999999886443 4445421 12221 1 246789999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLDLKK 650 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~--~~~~~~L~~ 650 (791)
++++.+...-.+...+..+.|+ .++.-+.+ ....+.+++
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~-~iViDvsSvK~~~~~~l~~ 104 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEG-SLLMDVTSVKERPVEAMEE 104 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCC-CEEEEcccccHHHHHHHHH
Confidence 9998764433223333334454 35554443 334444443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.25 Score=53.39 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=79.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCH-----------
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRP----------- 595 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~----------- 595 (791)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..++.++. +..+-.|-.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA----------RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe
Confidence 37999999999999999998 8899999999999987763211 000011111111
Q ss_pred -HHHHhcCCCCCcEEEEEeCCHHHHHHHH-HHHHHh--CCCCcEEEEecChhhHHHHHHC--------CCCeEEcCcHHH
Q 003861 596 -AVLLSAGITSPKAVMIMYTDKKRTIEAV-QRLRLA--FPAIPIYARAQDMMHLLDLKKA--------GATDAILENAET 663 (791)
Q Consensus 596 -~~L~~agi~~a~~viv~~~~d~~n~~~~-~~ar~l--~p~~~iiara~~~~~~~~L~~~--------Gad~Vi~p~~~~ 663 (791)
..++. +++||.|+-+..+|.+--..+ ..+.+. .|+ .|++...+.-....+... |. +.++|...+
T Consensus 76 ~~~~~~--~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~~r~~g~-hf~~P~~~~ 151 (286)
T PRK07819 76 TTDLGD--FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRPGRVLGL-HFFNPVPVL 151 (286)
T ss_pred eCCHHH--hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCCccEEEE-ecCCCcccC
Confidence 11221 478999999998875433222 233333 334 455554444333333321 22 233432211
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHh
Q 003861 664 SLQLGSKLLKGFGVMSDDVTFLRQLVR 690 (791)
Q Consensus 664 ~~~la~~~l~~l~~~~~~~~~l~~~~~ 690 (791)
. +. .+..+-+.++..++.....+.
T Consensus 152 ~--lv-Elv~~~~T~~~~~~~~~~~~~ 175 (286)
T PRK07819 152 P--LV-ELVPTLVTSEATVARAEEFAS 175 (286)
T ss_pred c--eE-EEeCCCCCCHHHHHHHHHHHH
Confidence 1 11 344445566666666655544
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.68 Score=49.57 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=63.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.|+|+|.+|..+++.|. +.| .++.+.|.++++.+.+.+. +..+ ..+..+.+ +++
T Consensus 2 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL----------ESGAVKPSQLTITNRTPAKAYHIKERYPGIHV---AKTIEEVI-----SQS 63 (273)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCHHHHHHHHHHcCCeEE---ECCHHHHH-----HhC
Confidence 3789999999999999997 556 3799999999988877653 3322 12222333 468
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHHHC
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~~~ 651 (791)
|.+++++.++ ....++..++.. .++ .++.....-...+.+++.
T Consensus 64 DiVilav~p~-~~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 64 DLIFICVKPL-DIYPLLQKLAPHLTDE-HCLVSITSPISVEQLETL 107 (273)
T ss_pred CEEEEecCHH-HHHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHH
Confidence 9999998643 333444444433 333 455555554455566543
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.2 Score=57.75 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=65.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-H----HHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V----KESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v----~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|.|+.|...|+.|. +.|++|.+.|.++.. . +.+++.|..+..|...+.+.++. ..+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d 70 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK----------AQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPD 70 (459)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCC
Confidence 5899999999999999998 899999999986542 2 23667788888887665543322 346788
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.||+..+-+.+| .....+|+.+ ++++-+
T Consensus 71 ~vv~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (459)
T PRK02705 71 LVVVSPGIPWDH-PTLVELRERG--IEVIGE 98 (459)
T ss_pred EEEECCCCCCCC-HHHHHHHHcC--CcEEEh
Confidence 887766555555 3456667764 566543
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.23 Score=50.85 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=56.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
+.++|.|. |..|+.+++.|. ++ ++|++++.+++..+++.+ .+..++.+|.+|++.++++ .+++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~----------~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 4 PTALITGASRGIGAAIARELA----------PT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------hh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCC
Confidence 35777775 889999999998 56 999999999887665543 3678899999999988764 33468
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.+|-+.+
T Consensus 73 d~vi~~ag 80 (227)
T PRK08219 73 DVLVHNAG 80 (227)
T ss_pred CEEEECCC
Confidence 88876654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.39 Score=53.31 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-c-cCC------CHHHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-G-DAS------RPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-G-D~t------~~~~L~~ag 602 (791)
..++.|+|.|.+|..++..|. +.| ++++...|++.++.+++.+.+.-+ + +.. -.+-+++ .
T Consensus 7 ~mkI~IiGaGa~G~alA~~La----------~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICA----------RRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-A 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-H
Confidence 347999999999999999998 677 788888999999888765432111 0 100 0011222 2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMH 644 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~ 644 (791)
++++|.++++++... .-.++..++. +.++..++.-++--++
T Consensus 75 ~~~aDlVilavps~~-~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVPSHG-FRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeCHHH-HHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 578899999998643 2233344443 4555556666665444
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.1 Score=47.88 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=55.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++++|+|.|..|+.+++.|.+ ..+.|++++. +|.|++... .-.|.+++ |+..| ..+-+.-.+.|.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~--~i~g~pVl-g~~~~--l~~~i~~~~id~V 192 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSR-------NPDLGYRVVGFVDDRPSDRV--EVAGLPVL-GKLDD--LVELVRAHRVDEV 192 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhh-------CccCCeEEEEEEeCCccccc--ccCCCccc-CCHHH--HHHHHHhCCCCEE
Confidence 4579999999999999999962 0134565554 676655421 22355543 44332 2222334567878
Q ss_pred EEEeCCHH--HHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKK--RTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~--~n~~~~~~ar~l~p~~~iia 637 (791)
+++.++.+ .-..+...+++.+.+++++-
T Consensus 193 iIa~p~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 193 IIALPLSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred EEecCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 88877643 22355667777654444443
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.7 Score=50.81 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=88.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhh--HHHHHhcCCCEEEccC-CCHHHHHhcCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGFPILYGDA-SRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~--v~~~~~~~~~~v~GD~-t~~~~L~~agi~ 604 (791)
+.+|.|+|. |++|..++..|. ..+ .+++++|.++.. +.++.+........+. .+.+ +. ..++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~----------~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d-~~-~~l~ 85 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMK----------MNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ-LG-DALK 85 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCC-HH-HHcC
Confidence 458999999 999999999986 333 379999998821 1123322223222232 1212 21 3568
Q ss_pred CCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh------HHHHHHC-C--CCeEEcCc
Q 003861 605 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH------LLDLKKA-G--ATDAILEN 660 (791)
Q Consensus 605 ~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~------~~~L~~~-G--ad~Vi~p~ 660 (791)
++|.||++.+. | ..|.. ++..+++.+|+..+++ +.|+.+ ...+.+. | .++|+--.
T Consensus 86 ~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aiviv-vSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323)
T PLN00106 86 GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNI-ISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence 89999888764 1 23444 4567777888855554 455543 2234443 3 37777766
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-+.|+...+-+.+++++..++.
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V~~ 188 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADVDV 188 (323)
T ss_pred cchHHHHHHHHHHHhCCChhheEE
Confidence 677778888888888888866543
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.023 Score=54.34 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=53.8
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
.+|+|.|..++.+++... ..|++|+++|.+++... ...-+. ....++..+...+...++| +++
T Consensus 1 L~I~GaG~va~al~~la~----------~lg~~v~v~d~r~e~~~-----~~~~~~-~~~~~~~~~~~~~~~~t~V-v~t 63 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAA----------LLGFRVTVVDPRPERFP-----EADEVI-CIPPDDILEDLEIDPNTAV-VMT 63 (136)
T ss_dssp EEEES-STCHHHHHHHHH----------HCTEEEEEEES-CCC-T-----TSSEEE-CSHHHHHHHHC-S-TT-EE-E--
T ss_pred CEEEeCcHHHHHHHHHHH----------hCCCEEEEEcCCccccC-----CCCccE-ecChHHHHhccCCCCCeEE-EEc
Confidence 479999999999999998 89999999999988654 222222 2233556677788888887 566
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHH
Q 003861 614 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 647 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~ 647 (791)
.+.+....+...+-+..+ -+|=.-.........
T Consensus 64 h~h~~D~~~L~~~l~~~~-~YiG~lGS~~k~~~~ 96 (136)
T PF13478_consen 64 HDHELDAEALEAALASPA-RYIGLLGSRRKAARR 96 (136)
T ss_dssp S-CCCHHHHHHHHTTSS--SEEEESS-HHHHHHH
T ss_pred CCchhHHHHHHHHHcCCC-CEEEeecCchHHHHH
Confidence 554444444445544432 234443333333333
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.93 Score=48.71 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=55.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCCh-hhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~-~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.++|+|.+|..+++.|. +.| .++++.|.++ ++.+.+.+ .+.... . +..+. ++++
T Consensus 5 kI~~IG~G~mG~aia~~l~----------~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~--~~~e~-----~~~a 66 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLL----------HANVVKGEQITVSNRSNETRLQELHQKYGVKGT-H--NKKEL-----LTDA 66 (279)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-C--CHHHH-----HhcC
Confidence 6899999999999999997 555 7789999865 46666654 354322 1 11222 3678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEe
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARA 639 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara 639 (791)
|.|++++.++.. ..++..++.. .++ ++++..
T Consensus 67 DvVilav~p~~~-~~vl~~l~~~~~~~-~liIs~ 98 (279)
T PRK07679 67 NILFLAMKPKDV-AEALIPFKEYIHNN-QLIISL 98 (279)
T ss_pred CEEEEEeCHHHH-HHHHHHHHhhcCCC-CEEEEE
Confidence 999999987543 2333444443 344 444443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.09 Score=50.13 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=54.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
..++++|+|.|..|+.++..|. +.|.+ +.++..++++.+++.+. +..+-..+..+.. ..+.++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~----------~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALA----------ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEA 76 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHH----------HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTE
T ss_pred CCCEEEEECCHHHHHHHHHHHH----------HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhC
Confidence 3568999999999999999998 77887 99999999998887653 2333333333333 124678
Q ss_pred cEEEEEeCCHHH
Q 003861 607 KAVMIMYTDKKR 618 (791)
Q Consensus 607 ~~viv~~~~d~~ 618 (791)
|.+|.+|+....
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999888887543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.58 Score=48.40 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=58.8
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--------CCCE-EEccCCCHHHHHhcC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--------GFPI-LYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--------~~~~-v~GD~t~~~~L~~ag 602 (791)
++.|+| .|.+|..+++.|. +.|++|++.+.++++.+.+.+. +... +.. .++.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~----------~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea----- 65 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA----------KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEA----- 65 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH----------hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHH-----
Confidence 378997 8999999999998 7899999999999988776542 1110 111 122222
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 642 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~ 642 (791)
++++|.+++++..... ..++..++...++ +++..+.+.
T Consensus 66 ~~~aDvVilavp~~~~-~~~l~~l~~~l~~-~vvI~~~ng 103 (219)
T TIGR01915 66 AKRADVVILAVPWDHV-LKTLESLRDELSG-KLVISPVVP 103 (219)
T ss_pred HhcCCEEEEECCHHHH-HHHHHHHHHhccC-CEEEEeccC
Confidence 4578999999887533 2223334333333 566555444
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.21 Score=51.67 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
.+.++|.|. |.+|+.+++.|. +.|+ +|++++.+++..+. ...+..++.+|.+|++.++++ ...+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~----------~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLL----------ARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDV 74 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 356888885 999999999998 8898 99999999887654 334577889999999887653 33457
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|++|-+.+
T Consensus 75 d~vi~~ag 82 (238)
T PRK08264 75 TILVNNAG 82 (238)
T ss_pred CEEEECCC
Confidence 87766654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.25 Score=51.19 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc--CCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a--gi~~a~ 607 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .+..++.+|.+|++.++++ .....|
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALA----------QRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 46888887 799999999998 889999999999988776654 3577889999999877654 234578
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
.+|-..+
T Consensus 80 ~vi~~ag 86 (245)
T PRK07060 80 GLVNCAG 86 (245)
T ss_pred EEEECCC
Confidence 7776553
|
|
| >TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.7 Score=42.63 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHcCCC--hHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHH
Q 003861 120 FLAVTVIVVPVFKIARAS--PILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAF 193 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~lP--~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~ 193 (791)
.+.++.+.+.+++++|+| ..+|-++++.++.-.+.. +...-+.+.+.+.+++--.+|.+++.+.+++..+...
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~-~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGL-EITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455777888899999998 677777777777644432 2234456777888888899999999999988776544
|
The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.38 Score=52.82 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=59.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|.|.|-.|....+..+ ..|.+|+++|.++++.+.+++.|...+.-.. |++..++..- .+|.++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Ak----------a~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ii 234 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAK----------AMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADAII 234 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcEEE
Confidence 457999999999999988887 7899999999999999999999877766433 7766666543 399998
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
.+.+
T Consensus 235 ~tv~ 238 (339)
T COG1064 235 DTVG 238 (339)
T ss_pred ECCC
Confidence 8888
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.19 Score=51.96 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=54.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcC--C-CCCc
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG--I-TSPK 607 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~ag--i-~~a~ 607 (791)
+++|.|. |.+|+.+++.|. ++|++|++++.++++.+...+ .+..++.+|.+|++.++++- + ++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFR----------NDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 3677776 899999999998 889999999999988776643 46788999999999877541 1 2467
Q ss_pred EEEEE
Q 003861 608 AVMIM 612 (791)
Q Consensus 608 ~viv~ 612 (791)
.+|-.
T Consensus 72 ~lv~~ 76 (223)
T PRK05884 72 TIVNV 76 (223)
T ss_pred EEEEC
Confidence 76654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.17 Score=52.27 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=55.9
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc---
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--- 601 (791)
.+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+ ...+++.+|.+|++.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALL----------AEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 356888875 999999999998 789999999999987655533 3467889999999876542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|-+.
T Consensus 76 ~~~~~~~~d~vi~~a 90 (237)
T PRK07326 76 IVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678877654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.17 Score=56.98 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag 602 (791)
.+|+|.|. |-+|+.+++.|. +. |++|+++|.+++..+.+.+ .+++++.||.+|++.++++
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~----------~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLM----------TETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL- 83 (386)
T ss_pred cEEEEECCcchHHHHHHHHHH----------hcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-
Confidence 46889985 999999999998 55 6999999988776655432 2477899999999988775
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+||=+.
T Consensus 84 ~~~~d~ViHlA 94 (386)
T PLN02427 84 IKMADLTINLA 94 (386)
T ss_pred hhcCCEEEEcc
Confidence 34578776443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.24 Score=59.72 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=49.9
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+.++.|+|+|++|+.+++.|. +.|++|+++|.+++. +.+++.|... .++.+.+ -.+++|.
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~e~---~~~~aDv 111 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLI----------SQGHTVLAHSRSDHS-LAARSLGVSF----FLDPHDL---CERHPDV 111 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHHHH---hhcCCCE
Confidence 34567999999999999999998 789999999998554 4455556432 2233221 1245888
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
|+++++.+
T Consensus 112 ViLavP~~ 119 (667)
T PLN02712 112 ILLCTSII 119 (667)
T ss_pred EEEcCCHH
Confidence 88888854
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.62 Score=49.74 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhh-------------------H----HHHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV-------------------V----KESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~-------------------v----~~~~~--~ 583 (791)
.+.+|+|+|+|-+|..+++.|. ..| -+++++|.|.-. + +++++ .
T Consensus 29 ~~s~VlVvG~GGVGs~vae~La----------r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP 98 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALA----------RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP 98 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence 3568999999999999999998 677 479999988211 1 22222 2
Q ss_pred CCCEEEc-cCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 584 GFPILYG-DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 584 ~~~~v~G-D~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
...+..- +..+++...+.-..++|.||.++++......+...+++.+ +++|.
T Consensus 99 ~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~ 151 (268)
T PRK15116 99 ECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVT 151 (268)
T ss_pred CcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 2222211 2223444444434579999888888777777788888875 56654
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.31 Score=55.14 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=54.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH------HH--HhcCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK------ES--RKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~------~~--~~~~~~~v~GD~t~~~~L~~agi 603 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+ .. ...+.+++.||.+|++.++++--
T Consensus 62 kVLVtGatG~IG~~l~~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELV----------RRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHH
Confidence 5778876 999999999998 78999999998875432 11 12468899999999999887522
Q ss_pred C---CCcEEEEEe
Q 003861 604 T---SPKAVMIMY 613 (791)
Q Consensus 604 ~---~a~~viv~~ 613 (791)
+ ++|.|+.+.
T Consensus 132 ~~~~~~D~Vi~~a 144 (390)
T PLN02657 132 SEGDPVDVVVSCL 144 (390)
T ss_pred HhCCCCcEEEECC
Confidence 2 689887554
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.28 Score=53.84 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=50.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++.|+|+|.+|+.+++.|+ +.|++|++.+.+++ ..+.+++.|+.+. +..+. +++||.|
T Consensus 17 gktIgIIG~GsmG~AlA~~L~----------~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVV 77 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLR----------DSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVI 77 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHH----------HCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEE
Confidence 346999999999999999998 88999988776644 3444555666431 22233 4678999
Q ss_pred EEEeCCHHH
Q 003861 610 MIMYTDKKR 618 (791)
Q Consensus 610 iv~~~~d~~ 618 (791)
+++++++..
T Consensus 78 vLaVPd~~~ 86 (330)
T PRK05479 78 MILLPDEVQ 86 (330)
T ss_pred EEcCCHHHH
Confidence 999987643
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.69 Score=49.44 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=74.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEE-Ec-CChhhH-HHHHh------cCCCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FD-LNPSVV-KESRK------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID-~d~~~v-~~~~~------~~~~~v~GD~t~~~~L~~ag 602 (791)
++.|+| +|++|+.+++.+.+ ..+.+++. +| .+++.. +.+.+ .+.. ++ +|.+.+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~---------~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~-~~---~d~~~l---- 65 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALA---------AEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVP-VT---DDLEAV---- 65 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccCCCHHHhcCcCcCCce-ee---CCHHHh----
Confidence 589999 69999999999972 46777555 66 344332 11111 1111 11 333334
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE--ecChhhHHHHH----HCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDMMHLLDLK----KAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar--a~~~~~~~~L~----~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
..++|++|.++.. +.-...+..+.+.+ .++++- ..+++..+.++ +.|+--++.|+...|..+..++++
T Consensus 66 ~~~~DvVIdfT~p-~~~~~~~~~al~~g--~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 66 ETDPDVLIDFTTP-EGVLNHLKFALEHG--VRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred cCCCCEEEECCCh-HHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 2568988888754 44455566666664 455542 34555555554 445667788998888888777765
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.21 Score=55.36 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~agi 603 (791)
...+++|.|. |-+|+.+++.|. +.|++|++++.+++..+...+ .++.++.+|.+|++.++++ +
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 77 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLL----------QRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA-V 77 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-H
Confidence 4457999984 899999999998 789999999888776544321 2467889999999888775 3
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
+++|.||-+.
T Consensus 78 ~~~d~Vih~A 87 (353)
T PLN02896 78 KGCDGVFHVA 87 (353)
T ss_pred cCCCEEEECC
Confidence 4577766554
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.75 Score=47.43 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh------------------hhHH----HHHh--cC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVK----ESRK--LG 584 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~------------------~~v~----~~~~--~~ 584 (791)
.+.+|+|+|+|.+|..+++.|. ..|.. ++++|.|. .+++ ++++ .+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA----------RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC
Confidence 3568999999999999999998 77886 99999982 1122 2222 22
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
...+..+.+++ .+.+ -++++|.||.++++.+.-..+...+++.
T Consensus 97 v~v~~~~~~i~~~-~~~~-~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 97 VEIEAHNEKIDED-NIEE-LFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred CEEEEEeeecCHH-HHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 22333344433 2222 3578998888887766555566666666
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.59 Score=60.93 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+++-++|+|.+|..+++.|. +.|++|.+.|.++++++.+.+.|... ..+++.+ ++++|.|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvV 384 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLL----------KSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVL 384 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEE
Confidence 3457999999999999999998 89999999999999999988776433 2334322 3578999
Q ss_pred EEEeCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hhhH----HHHHH--CCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MMHL----LDLKK--AGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~----~ar~l~p~~~iiara~~--~~~~----~~L~~--~Gad~Vi~p 659 (791)
+++.++++..-.+.. .+..+.++ .+++-..+ ++.. +.+++ .|+..+=.|
T Consensus 385 i~~V~~~~~v~~Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 385 VIMVANEVQAENVLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred EEecCChHHHHHHHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999998754333321 22233343 45554433 3333 44455 677766555
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.27 Score=52.29 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=57.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ ....++.+|.+|++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLL----------ARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888885 899999999998 889999999999988777654 2567889999999877653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 234678777654
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.23 Score=52.74 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+.++|||||.+|+.-|+.|+ ..|..|.|-|.||-..-++.-+|+++..- +++ ++++|.+
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLk----------g~g~~VivTEiDPI~ALQAaMeG~~V~tm--------~ea-~~e~dif 273 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALK----------GFGARVIVTEIDPICALQAAMEGYEVTTL--------EEA-IREVDIF 273 (434)
T ss_pred cccEEEEeccCccchhHHHHHh----------hcCcEEEEeccCchHHHHHHhhccEeeeH--------HHh-hhcCCEE
Confidence 3457999999999999999998 89999999999999877777788888753 332 4677877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.+|++ .|+....+.+++- +--|++.
T Consensus 274 VTtTGc--~dii~~~H~~~mk-~d~IvCN 299 (434)
T KOG1370|consen 274 VTTTGC--KDIITGEHFDQMK-NDAIVCN 299 (434)
T ss_pred EEccCC--cchhhHHHHHhCc-CCcEEec
Confidence 777776 4666677777763 3245553
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.63 Score=60.62 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+++-++|+|.+|..+++.|. +.|++|.+.|.++++++++.+.|.... .++.-+- +++|.|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~a----~~advV 64 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL----------RSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEAA----KDAAAL 64 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHHH----hcCCEE
Confidence 3567999999999999999998 899999999999999999998875432 2333222 568999
Q ss_pred EEEeCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chh----hHHHHHHCC--CCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMM----HLLDLKKAG--ATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~----~ar~l~p~~~iiara~--~~~----~~~~L~~~G--ad~Vi~p 659 (791)
+++.++++....+.. .+..+.|+ .+++-.. +++ -.+.+++.| +..+=.|
T Consensus 65 i~~l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 65 VVVLSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred EEEcCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999998765444431 22233343 4555433 333 334456778 6555444
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.51 Score=51.54 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH-HHH---hcC----C-CEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-ESR---KLG----F-PILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~-~~~---~~~----~-~~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..+|..+. ..|. +|+++|.+++..+ ++. +.+ . .-+.. .+| +++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la----------~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d---~~~- 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA----------EKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNN---YAD- 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCC---HHH-
Confidence 36899999999999999997 6665 8999999877543 211 111 1 11221 122 222
Q ss_pred CCCCCcEEEEEeCC-----H------HHHHHHHH----HHHHhCCCCcEEEEecChhhHH---HHHHCCC--CeEEcCc-
Q 003861 602 GITSPKAVMIMYTD-----K------KRTIEAVQ----RLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAILEN- 660 (791)
Q Consensus 602 gi~~a~~viv~~~~-----d------~~n~~~~~----~ar~l~p~~~iiara~~~~~~~---~L~~~Ga--d~Vi~p~- 660 (791)
+++||.+|++.+. . ..|..++. .+++.+|+..++ .+.||.+.- ..+..|- .+|+---
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iI-v~tNP~di~t~~~~~~sg~~~~rviG~g~ 144 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIV-VVSNPLDAMTYVAWQKSGFPKERVIGQAG 144 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHHCcCHHHEEEecc
Confidence 5899999999872 1 24665544 356667775444 445544332 2344343 3465542
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTFL 685 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~l 685 (791)
..-..|+-+.+-+.+++++..++..
T Consensus 145 ~lds~R~~~~la~~l~v~~~~v~~~ 169 (305)
T TIGR01763 145 VLDSARFRTFIAMELGVSVQDVTAC 169 (305)
T ss_pred chHHHHHHHHHHHHhCcCHHHeeee
Confidence 3334456666777778888765543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) | Back alignment and domain information |
|---|
Probab=93.15 E-value=16 Score=40.10 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHhhhHH
Q 003861 162 KVLSEWGILFLLFEMGLELSLARLKALAKFA 192 (791)
Q Consensus 162 ~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~ 192 (791)
+....+++..+.|..|+.++.+++++..+..
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 4677888999999999999999999876554
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.11 Score=51.90 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=46.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|+ ..|.+|++.|..++......+.++.. + +-++.++ ++|.|+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~~~~~~~~~~~~---~-~l~ell~-----~aDiv~ 96 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLK----------AFGMRVIGYDRSPKPEEGADEFGVEY---V-SLDELLA-----QADIVS 96 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSCHHHHHHHHTTEEE---S-SHHHHHH-----H-SEEE
T ss_pred CCEEEEEEEcCCcCeEeeeee----------cCCceeEEecccCChhhhccccccee---e-ehhhhcc-----hhhhhh
Confidence 457999999999999999998 89999999999998766444443311 1 2234443 588888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
+..+-
T Consensus 97 ~~~pl 101 (178)
T PF02826_consen 97 LHLPL 101 (178)
T ss_dssp E-SSS
T ss_pred hhhcc
Confidence 88774
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.42 Score=55.64 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-------------H
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-------------A 596 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-------------~ 596 (791)
...+|+|+|.|..|...+..++ ..|.+|+++|.++++.+.+++.|...+.-|..++ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak----------~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAG----------SLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 4668999999999999999998 8899999999999999999999988654444321 1
Q ss_pred HHH------hcCCCCCcEEEEEeCCHH---HHHHHHHHHHHhCCCCcEEEEe
Q 003861 597 VLL------SAGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 597 ~L~------~agi~~a~~viv~~~~d~---~n~~~~~~ar~l~p~~~iiara 639 (791)
..+ .-.++.+|.+|-++..+. ..+..-...+...|+-.|+-..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 112467999988887642 1122244555566654444333
|
|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.15 Score=57.62 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=86.8
Q ss_pred cCCCCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHH-Hhc--CCCEEEccCCCHHHHHh
Q 003861 529 EGSEPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKES-RKL--GFPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~-~~~--~~~~v~GD~t~~~~L~~ 600 (791)
..++|++|||.= .+..-+-+.|.+ |+++.+.+||....-+.. .+-+ .++ .++..+|..-++.-|.+
T Consensus 355 hgkkhivvcghityesvshflkdflhe------drddvdvevvflhr~~pdleleglfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 355 HGKKHIVVCGHITYESVSHFLKDFLHE------DRDDVDVEVVFLHRISPDLELEGLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred cCCeeEEEecceeHHHHHHHHHHHhhc------cccccceEEEEEecCCCCcchHHHHhhheeeEEEecccccChhhhhh
Confidence 468899999963 334444444441 345555666666543322 1222 222 35678899999999999
Q ss_pred cCCCCCcEEEEEeC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH-------HCCCCeEEcCcHHHHH
Q 003861 601 AGITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK-------KAGATDAILENAETSL 665 (791)
Q Consensus 601 agi~~a~~viv~~~--------~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~-------~~Gad~Vi~p~~~~~~ 665 (791)
..+++||+..+..+ +|..|++-+...|...|+++||...-+-.+...|. |-| |+||+-.+.-=-
T Consensus 429 vki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~g-ddviclaelklg 507 (1103)
T KOG1420|consen 429 VKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEG-DDVICLAELKLG 507 (1103)
T ss_pred eeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccC-CceEEehhhhhh
Confidence 99999999877664 25678887888888888888877655555544443 234 456665543323
Q ss_pred HHHHHHHh
Q 003861 666 QLGSKLLK 673 (791)
Q Consensus 666 ~la~~~l~ 673 (791)
-+|...+.
T Consensus 508 fiaqscla 515 (1103)
T KOG1420|consen 508 FIAQSCLA 515 (1103)
T ss_pred hhHHHhhc
Confidence 34555554
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.22 Score=51.81 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=49.2
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~a 601 (791)
.++|.| .|.+|+.+++.|. ++|++|++++.++++.+++.+. ....+.+|.+|++.++++
T Consensus 3 ~vlItGas~giG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYA----------KQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 467776 5899999999998 8899999999999887776543 467889999999977764
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.38 Score=56.15 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=50.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------CCCE-------EEccCCCHHHHH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPI-------LYGDASRPAVLL 599 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~~~~-------v~GD~t~~~~L~ 599 (791)
++.|+|.|.+|..+|..|. +.|++|++.|.+++..+.+.+. ...- ..|..+-.+.++
T Consensus 6 kIavIG~G~MG~~iA~~la----------~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ 75 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFL----------LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLA 75 (495)
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHH
Confidence 6899999999999999998 8899999999999987664320 0000 001111111232
Q ss_pred hcCCCCCcEEEEEeCCHH
Q 003861 600 SAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~ 617 (791)
+ -+++||.|+.+..++.
T Consensus 76 e-a~~~aD~Vieavpe~~ 92 (495)
T PRK07531 76 E-AVAGADWIQESVPERL 92 (495)
T ss_pred H-HhcCCCEEEEcCcCCH
Confidence 2 2578999999988874
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.96 Score=48.60 Aligned_cols=142 Identities=12% Similarity=0.133 Sum_probs=73.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|.+|..+++.|. +.| +++++++.++ ++.+.+.+....+.. .++.+ ++ ++++|
T Consensus 3 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~--~~~~~---e~-~~~aD 66 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLL----------ETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL--ADNEA---EI-FTKCD 66 (277)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE--eCCHH---HH-HhhCC
Confidence 4889999999999999997 555 6899998764 445544432111111 12221 11 35789
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-CCCCeE--EcCcHHHHHHHHHHHHh-hcCCChHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDA--ILENAETSLQLGSKLLK-GFGVMSDDV 682 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~-~Gad~V--i~p~~~~~~~la~~~l~-~l~~~~~~~ 682 (791)
.+++++..+. -..++..++. +.++..++..+.--... .|++ .+...| +.|+.-....-+-..+. .-.+.....
T Consensus 67 vVilavpp~~-~~~vl~~l~~~l~~~~~ivS~~aGi~~~-~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~ 144 (277)
T PRK06928 67 HSFICVPPLA-VLPLLKDCAPVLTPDRHVVSIAAGVSLD-DLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANK 144 (277)
T ss_pred EEEEecCHHH-HHHHHHHHHhhcCCCCEEEEECCCCCHH-HHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHH
Confidence 9999988543 3334444443 33443455544433333 4433 342233 45664332222211111 112334445
Q ss_pred HHHHHHHhcc
Q 003861 683 TFLRQLVRNS 692 (791)
Q Consensus 683 ~~l~~~~~~~ 692 (791)
+..+++++.-
T Consensus 145 ~~v~~l~~~~ 154 (277)
T PRK06928 145 SRLEETLSHF 154 (277)
T ss_pred HHHHHHHHhC
Confidence 5666666553
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.92 Score=48.45 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=63.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCc-EEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWP-FVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~-vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++.|+|+|++|+.+++.+. +. +.+ +.++|.++++.+.+.+ .+... + ++.+.+- .++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~----------~~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~---~~~~ell----~~~Dv 64 (265)
T PRK13304 3 KIGIVGCGAIASLITKAIL----------SGRINAELYAFYDRNLEKAENLASKTGAKA-C---LSIDELV----EDVDL 64 (265)
T ss_pred EEEEECccHHHHHHHHHHH----------cCCCCeEEEEEECCCHHHHHHHHHhcCCee-E---CCHHHHh----cCCCE
Confidence 5899999999999999987 33 344 5578999998887755 23221 2 2333332 67999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHH----HHHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLD----LKKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~----L~~~Gad~Vi~ 658 (791)
|+.+++.+. ....+..+.+.+. ++++-.. |.+..+. .++.|..-.+.
T Consensus 65 Vvi~a~~~~-~~~~~~~al~~Gk--~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 65 VVECASVNA-VEEVVPKSLENGK--DVIIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred EEEcCChHH-HHHHHHHHHHcCC--CEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 999987643 3444555555443 4444322 4333333 35557654443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.95 Score=45.36 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=69.8
Q ss_pred eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h---cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 537 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K---LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 537 ~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~---~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
||.|.++-+.+ +. .....|++||.|++.++..+ + .++.++.||+ |+.|. ++.+.|++
T Consensus 43 aGtGsi~iE~a--~~----------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~--~~~~~dai 106 (187)
T COG2242 43 AGTGSITIEWA--LA----------GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP--DLPSPDAI 106 (187)
T ss_pred CCccHHHHHHH--Hh----------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc--CCCCCCEE
Confidence 55567777776 43 67789999999999976654 2 3456777776 57777 56699999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHH----HHHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD----LKKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~----L~~~Gad~Vi~ 658 (791)
.+.-+...+.+. =.....+.|.-++|+.+.+.++... +++.|...++.
T Consensus 107 FIGGg~~i~~il-e~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 107 FIGGGGNIEEIL-EAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EECCCCCHHHHH-HHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEE
Confidence 887664333332 1222334666689999888877654 46667643433
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.57 Score=52.67 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..++.|+| .|.+|..+++.|. +.|++|.++|.++. ++.+ .-+.+||.|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~----------~~G~~V~~~d~~~~-----------------~~~~----~~~~~aDlV 146 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLT----------LSGYQVRILEQDDW-----------------DRAE----DILADAGMV 146 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHH----------HCCCeEEEeCCCcc-----------------hhHH----HHHhcCCEE
Confidence 46799998 9999999999998 88999999998632 1111 124578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
|.+++.+...-.+ ..+..+.|+ .+++-..+
T Consensus 147 ilavP~~~~~~~~-~~l~~l~~~-~iv~Dv~S 176 (374)
T PRK11199 147 IVSVPIHLTEEVI-ARLPPLPED-CILVDLTS 176 (374)
T ss_pred EEeCcHHHHHHHH-HHHhCCCCC-cEEEECCC
Confidence 9998876543222 222223333 46665554
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.21 Score=53.21 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHh--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS-- 600 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~-- 600 (791)
++++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 73 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELA----------KKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQ 73 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHH
Confidence 46788875 899999999998 789999999999887655432 246778999999988764
Q ss_pred ---cCCCCCcEEEEEeC
Q 003861 601 ---AGITSPKAVMIMYT 614 (791)
Q Consensus 601 ---agi~~a~~viv~~~ 614 (791)
......|.+|-+.+
T Consensus 74 ~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHhcCCeeEEEECCc
Confidence 12245687777654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.24 Score=52.07 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.| .|.+|+.+++.|. +.|++|+++|.+++..++..+. ....+.+|.+|++.++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYA----------RQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 4678887 5899999999998 7899999999999887665432 467889999998877553
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 73 ~~~~g~id~lv~~a 86 (257)
T PRK07024 73 IAAHGLPDVVIANA 86 (257)
T ss_pred HHhCCCCCEEEECC
Confidence 123467776654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.19 Score=49.87 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeC
Q 003861 535 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 535 iI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~ 614 (791)
||+--|+.|..++++.. ++|++|++|-.|+.++... ++..+++.|..|++.+ .-.+...|+||.+.+
T Consensus 5 iIgAsG~~Gs~i~~EA~----------~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~ 71 (211)
T COG2910 5 IIGASGKAGSRILKEAL----------KRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFG 71 (211)
T ss_pred EEecCchhHHHHHHHHH----------hCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEecc
Confidence 55566999999999998 8999999999999987644 5889999999999998 557888999988865
Q ss_pred C
Q 003861 615 D 615 (791)
Q Consensus 615 ~ 615 (791)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 4
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.27 Score=51.05 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 7 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 7 PRALITGASSGIGKATALAFA----------KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHH
Confidence 46788876 899999999998 899999999999887655432 2356789999999876543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246788876654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.18 Score=55.82 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=54.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|.+.|.+++... ..+.+.. ..+ ++++ ++++|.|+
T Consensus 150 gktvgIiG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV~ 209 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAK----------GFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFVS 209 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEEE
Confidence 457999999999999999998 88999999998765432 2222321 112 2222 46789898
Q ss_pred EEeCCHHHHH--HHHHHHHHhCCCCc
Q 003861 611 IMYTDKKRTI--EAVQRLRLAFPAIP 634 (791)
Q Consensus 611 v~~~~d~~n~--~~~~~ar~l~p~~~ 634 (791)
++.+..+++. .-......+.|+..
T Consensus 210 l~lP~t~~T~~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 210 LHVPLTKETYHMINEERLKLMKPTAI 235 (333)
T ss_pred EeCCCChHHhhccCHHHHhcCCCCeE
Confidence 8888755333 22344444555433
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.1 Score=51.88 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=54.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh----------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---------- 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~---------- 600 (791)
++.|+|.|.+|..++-.|. +. |++|+.+|.|+++++.+++.+.+. .+..-++.+++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA----------~~g~g~~V~gvD~~~~~v~~l~~g~~~~--~e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIA----------LKCPDIEVVVVDISVPRIDAWNSDQLPI--YEPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCeEEEEECCHHHHHHHHcCCCcc--CCCCHHHHHHHhhcCCEEEEc
Confidence 4889999999999999997 55 588999999999999998766544 24445555433
Q ss_pred ---cCCCCCcEEEEEeC
Q 003861 601 ---AGITSPKAVMIMYT 614 (791)
Q Consensus 601 ---agi~~a~~viv~~~ 614 (791)
..+++||+++++.+
T Consensus 71 ~~~~~i~~advi~I~V~ 87 (473)
T PLN02353 71 DVEKHVAEADIVFVSVN 87 (473)
T ss_pred CHHHHHhcCCEEEEEeC
Confidence 12568999999874
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.45 Score=54.35 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-c----------CChhhHHHHHhcC---CCEEE---c-c-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-D----------LNPSVVKESRKLG---FPILY---G-D- 591 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D----------~d~~~v~~~~~~~---~~~v~---G-D- 591 (791)
..+++|.|+|.+|+.+|+.|. +.|..|+++ | .|.+.+.+..+.. ..-+. | +
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~----------~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~ 301 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQ----------QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY 301 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee
Confidence 458999999999999999998 899999998 8 7888665554321 11110 0 1
Q ss_pred CCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 592 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 592 ~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.++++.+. .++|.++=+...+..|-.-+...+. .++++|+..- +++..+.|++-|+-. .|.
T Consensus 302 i~~~~i~~----~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~~--vPD 366 (445)
T PRK09414 302 LEGGSPWS----VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVLF--APG 366 (445)
T ss_pred cCCccccc----cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcEE--ECc
Confidence 12233332 3789888777766555555555543 2578888654 468888899998754 476
|
|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.3 Score=46.43 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred HHHHHHHHHHH--HcCCChHHHHHHHHHhhccc----CCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 003861 122 AVTVIVVPVFK--IARASPILGFFFAGIVLNQL----GIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 194 (791)
Q Consensus 122 ~~a~l~~~l~~--rl~lP~ivg~ilaGillGp~----gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~ 194 (791)
.++..+..+.+ .+.+|..++-+++|+++... +..+ +.+.++.++++.+-+++..+=+.+++..+.+..-+.+.
T Consensus 231 ~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plli 310 (368)
T PF03616_consen 231 GLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLI 310 (368)
T ss_pred HHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444 36789999999999999862 3322 56789999999999999988889999999999998888
Q ss_pred HHHHHHHHHHHHHHHh
Q 003861 195 MGLTQVVLSTLAFTAF 210 (791)
Q Consensus 195 la~~~~llt~~~~~~~ 210 (791)
+-.+|++++.+....+
T Consensus 311 il~~q~i~~~~f~~fv 326 (368)
T PF03616_consen 311 ILAVQTILMVLFAYFV 326 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877654443
|
The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.32 Score=54.57 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCCEEEe----C-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH-----------HHHhcCCCEEEccCC
Q 003861 530 GSEPVVIV----G-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----------ESRKLGFPILYGDAS 593 (791)
Q Consensus 530 ~~~~viI~----G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~-----------~~~~~~~~~v~GD~t 593 (791)
....|+|. | .|.+|+.+++.|. +.|++|++++.+++..+ .+.+.+..++.||.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELV----------KAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHH----------HCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHH
Confidence 34569999 5 5999999999998 88999999998876432 233457899999998
Q ss_pred CHHHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhCC
Q 003861 594 RPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFP 631 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~p 631 (791)
|.+.+. ...++|+|+-+.+.+. ....++..+++.+.
T Consensus 121 d~~~~~--~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gv 157 (378)
T PLN00016 121 DVKSKV--AGAGFDVVYDNNGKDLDEVEPVADWAKSPGL 157 (378)
T ss_pred HHHhhh--ccCCccEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 833222 2357888877655442 23334555666553
|
|
| >TIGR00832 acr3 arsenical-resistance protein | Back alignment and domain information |
|---|
Probab=92.67 E-value=19 Score=39.75 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHHHHhhh-hhHHHHHHH
Q 003861 432 IIKTLIISAIGPRVGLTLQESVRIGLLLSQG-GEFAFVVFS 471 (791)
Q Consensus 432 l~K~l~~~~~~~~~~~~~r~~~~~g~~l~~r-G~~~lvla~ 471 (791)
+.-+...+..++.+|.+.+++..+.+.-+.| +..++.++.
T Consensus 257 ~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 257 YIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 3444555667777899999998888776665 355555554
|
The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.16 Score=56.98 Aligned_cols=108 Identities=23% Similarity=0.287 Sum_probs=69.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
.+.|+|.|+.|+.+++..+ +.|++|+++|.+++... .......+.+|..|++.+++.- +.+|++ +
T Consensus 4 ~igilG~Gql~~ml~~aa~----------~lG~~v~~~d~~~~~pa--~~~ad~~~~~~~~D~~~l~~~a-~~~dvi--t 68 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAA----------PLGYKVIVLDPDPDSPA--AQVADEVIVADYDDVAALRELA-EQCDVI--T 68 (372)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCch--hHhCceEEecCCCCHHHHHHHH-hcCCEE--E
Confidence 5889999999999999998 89999999999876522 2223456778999999998763 578865 3
Q ss_pred eCCHHHHHHHHHHHHH---hCCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 613 YTDKKRTIEAVQRLRL---AFPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~---l~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
.+.+..+......+.+ ..|+...+..+.|... .+.|+++|+..
T Consensus 69 ~e~e~i~~~~l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~ 115 (372)
T PRK06019 69 YEFENVPAEALDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPV 115 (372)
T ss_pred eCcCCCCHHHHHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 3322222222222222 2344344445555443 44467778764
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.46 Score=53.27 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.+++|.|. |-+|+.+++.|. +.|++|+++|..+...........+++.+|.+|.+.+.++ ++++|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~----------~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLK----------AEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKV-TKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHH----------hCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHH-HhCCCE
Confidence 4567999998 999999999998 7899999999754321111112356788999999888765 246787
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
|+=+.
T Consensus 89 Vih~A 93 (370)
T PLN02695 89 VFNLA 93 (370)
T ss_pred EEEcc
Confidence 66554
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.21 Score=55.26 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=54.8
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHh
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~ 600 (791)
.+++++|.|. |-+|+.+++.|. ++|++|++++.+++..+...+ ..+.++.||.+|++.+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHH----------HCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 3557888886 999999999998 789999998887765443221 135688999999988876
Q ss_pred cCCCCCcEEEEEe
Q 003861 601 AGITSPKAVMIMY 613 (791)
Q Consensus 601 agi~~a~~viv~~ 613 (791)
+ ++++|.|+-+.
T Consensus 74 ~-~~~~d~ViH~A 85 (351)
T PLN02650 74 A-IRGCTGVFHVA 85 (351)
T ss_pred H-HhCCCEEEEeC
Confidence 4 34577776543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.4 Score=53.97 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|.++...+...+.+... .+ +-++.+ +++|.|+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~----------afG~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~sDvV~ 260 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLK----------PFNCNLLYHDRLKMDPELEKETGAKF--EE-DLDAML-----PKCDVVV 260 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHH----------HCCCEEEEECCCCcchhhHhhcCcee--cC-CHHHHH-----hhCCEEE
Confidence 457999999999999999998 88999999998754333333333221 11 222333 5689898
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCCc
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAIP 634 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~~ 634 (791)
+..+..+++.-+ ...+..+.|+..
T Consensus 261 l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 261 INTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred EeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 888875444332 344445555533
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.39 Score=55.72 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-HhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++.|+|+|..|..+++.|. +.|.+|.+.|.++....++ ++.|+.+..|+-. ++ +++++|.|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~v 78 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLS----------ELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSLV 78 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHH----------HCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCEE
Confidence 457999999999999999998 8999999999877665443 4557777765322 22 23567877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
|...+=+..|- ....+|+.+ ++++.+..
T Consensus 79 V~Spgi~~~~p-~~~~a~~~g--i~v~~~~e 106 (473)
T PRK00141 79 VTSPGWRPDSP-LLVDAQSQG--LEVIGDVE 106 (473)
T ss_pred EeCCCCCCCCH-HHHHHHHCC--CceeeHHH
Confidence 66654444443 345667654 56665443
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.15 Score=51.27 Aligned_cols=104 Identities=22% Similarity=0.308 Sum_probs=57.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-----EEEccCCCH------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-----ILYGDASRP------------ 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-----~v~GD~t~~------------ 595 (791)
+|.|+|.|.+|+.+|..+. ..|++|+++|.|++..++.++.-.. +-.|..+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA----------RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH----------HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 4789999999999999998 7899999999999986554421000 011111111
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
+-++++. +||.||=++.+|.+ =..+-..+.+.-|.-.+++...+.-....+
T Consensus 71 ~dl~~~~--~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 71 TDLEEAV--DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp SSGGGGC--TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred cCHHHHh--hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 1133333 88988888887632 223334444444333566665554444444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.1 Score=50.40 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=66.0
Q ss_pred CEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-EE-EccC---------------CC
Q 003861 533 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-IL-YGDA---------------SR 594 (791)
Q Consensus 533 ~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-~v-~GD~---------------t~ 594 (791)
+++++|.|.+|+ .+...|. +.|++|+.+|.+++.++.+++.|.. +. .|+. ++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~----------~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~ 71 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLA----------DNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADE 71 (381)
T ss_pred ceEEECCchhhHHHHHHHHH----------hCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCH
Confidence 589999999999 5577887 7899999999999999999887754 22 2332 11
Q ss_pred HHHHHhcCCCCCcEEEEEeCCHH-H----HHHHHHHHHHh---CCCCcEEEEecChhhHHHHHHC
Q 003861 595 PAVLLSAGITSPKAVMIMYTDKK-R----TIEAVQRLRLA---FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 595 ~~~L~~agi~~a~~viv~~~~d~-~----n~~~~~~ar~l---~p~~~iiara~~~~~~~~L~~~ 651 (791)
+++++ .+.++|.+..++.... . .+.-.+..|.. .+...|++-.|-..|.+.|++.
T Consensus 72 ~~~~~--~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 72 EAVIE--AIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHHHH--HhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 12222 2346675555554321 1 12222333332 2334566766777777777765
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.3 Score=53.43 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|.+|+.+++.|+ ..|.+|.++|..++... +.....+ .+.|++ -++++|.|+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~----------afG~~V~~~~~~~~~~~-----~~~~~~~----~~~l~e-~l~~aDvvv 195 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQ----------TWGFPLRCWSRSRKSWP-----GVQSFAG----REELSA-FLSQTRVLI 195 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCCC-----Cceeecc----cccHHH-HHhcCCEEE
Confidence 357999999999999999998 89999999998665421 2222211 112221 236789999
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
++.+..+.|..+ ....+.+.|+.
T Consensus 196 ~~lPlt~~T~~li~~~~l~~mk~ga 220 (312)
T PRK15469 196 NLLPNTPETVGIINQQLLEQLPDGA 220 (312)
T ss_pred ECCCCCHHHHHHhHHHHHhcCCCCc
Confidence 988876554443 33445555553
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.1 Score=47.52 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=57.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc---EEEEcCChhhHHHHHhcC--CCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP---FVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~---vvvID~d~~~v~~~~~~~--~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|++|+.+++.|. +.|++ +.+.|.++++.+++.+.. ..+ .. +..+.. +++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~----------~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~--~~~~~~-----~~aD 63 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL----------TSPADVSEIIVSPRNAQIAARLAERFPKVRI-AK--DNQAVV-----DRSD 63 (258)
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCChheEEEECCCHHHHHHHHHHcCCceE-eC--CHHHHH-----HhCC
Confidence 4789999999999999997 55543 578889999888776642 222 11 122222 4689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~ 649 (791)
.|++++.++ ....+...++ ..++ ++++..--....+.++
T Consensus 64 vVilav~p~-~~~~vl~~l~-~~~~-~~vis~~ag~~~~~l~ 102 (258)
T PRK06476 64 VVFLAVRPQ-IAEEVLRALR-FRPG-QTVISVIAATDRAALL 102 (258)
T ss_pred EEEEEeCHH-HHHHHHHHhc-cCCC-CEEEEECCCCCHHHHH
Confidence 999998853 2233332222 2343 3444344444444444
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.4 Score=56.00 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=35.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++.++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la----------~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA----------SAGHQVLLYDIRAEALARA 44 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 46999999999999999998 8899999999999998754
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.5 Score=48.84 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------------cCCCEEEccCCCH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------------LGFPILYGDASRP 595 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------------~~~~~v~GD~t~~ 595 (791)
..++|+++|+|. |..+.+.|+ .....++++||.|++.++.+++ ....++.+|+.+
T Consensus 150 ~PkrVLIIGgGd-G~tlrelLk---------~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~- 218 (374)
T PRK01581 150 DPKRVLILGGGD-GLALREVLK---------YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE- 218 (374)
T ss_pred CCCEEEEECCCH-HHHHHHHHh---------cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-
Confidence 456899999884 555555554 1223689999999999887774 245678888874
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHH----HH----HHHHHHHHhCCCCcEEEEec
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKR----TI----EAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~----n~----~~~~~ar~l~p~~~iiara~ 640 (791)
.+++. -++.|.|++-.+|+.. .+ ......+.+.|+--+++.+.
T Consensus 219 -fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 219 -FLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred -HHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 44443 2579999888765321 11 12334455677644444433
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.42 Score=49.64 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ ....++.+|.+|++-++++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFA----------AEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46788876 889999999998 789999999999987665533 2356889999999988754
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|++|-..+
T Consensus 76 ~~~~~~~d~vi~~ag 90 (251)
T PRK07231 76 LERFGSVDILVNNAG 90 (251)
T ss_pred HHHhCCCCEEEECCC
Confidence 2246787777654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.3 Score=51.58 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.|.|++..+++.+. ...++.+|.+|++.++++
T Consensus 7 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALV----------AAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 46778876 899999999998 8999999999998876665432 356788999999877553
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~~a 88 (261)
T PRK08265 77 RFGRVDILVNLA 88 (261)
T ss_pred HhCCCCEEEECC
Confidence 123567776554
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.33 Score=53.00 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---h-----cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~-----~~~~~v~GD~t~~~~L~~a 601 (791)
.+.++|.|. |-+|+.+++.|. ++|++|++++.|++..+... . ...+++.+|.+|++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLL----------FRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH
Confidence 457888885 899999999998 88999988877765433221 1 2366889999999988765
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
+++.|.+|-+.+
T Consensus 75 -~~~~d~vih~A~ 86 (325)
T PLN02989 75 -IDGCETVFHTAS 86 (325)
T ss_pred -HcCCCEEEEeCC
Confidence 456787776653
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.2 Score=46.87 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHH----HHh----cCCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKE----SRK----LGFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~----~~~----~~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..+. ..| .+++++|.|++..+- +.+ .+.. -+.+ .+|.+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~----------~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~---- 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLIL----------QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE---- 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH----
Confidence 458999999999999999887 455 589999999876431 111 1111 1221 13333
Q ss_pred cCCCCCcEEEEEeCCH--H---------HHH----HHHHHHHHhCCCCcEEEEecChhh--HHHHHHC-C--CCeEEcCc
Q 003861 601 AGITSPKAVMIMYTDK--K---------RTI----EAVQRLRLAFPAIPIYARAQDMMH--LLDLKKA-G--ATDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~d--~---------~n~----~~~~~ar~l~p~~~iiara~~~~~--~~~L~~~-G--ad~Vi~p~ 660 (791)
.+++||.||++.+.. . .|. .++..+++.+|+.. +..+.|+.+ ...+.+. | ..+|+--.
T Consensus 70 -~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~-vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 70 -DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAF-VICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred -HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE-EEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 347889998887321 1 122 35566677788754 333455443 3334343 3 35676333
Q ss_pred -HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 -AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 -~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-..|+-+.+-+.+++++..++.
T Consensus 148 t~lds~R~~~~la~~l~v~~~~v~~ 172 (319)
T PTZ00117 148 GVLDSSRFRCNLAEKLGVSPGDVSA 172 (319)
T ss_pred chHHHHHHHHHHHHHhCCCcccceE
Confidence 333345666666777888866553
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.33 Score=51.20 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ...++.+|.+|++.++++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALA----------AAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 45888885 889999999998 8899999999999887666543 467889999999876543
Q ss_pred -CCCCCcEEEEEeC
Q 003861 602 -GITSPKAVMIMYT 614 (791)
Q Consensus 602 -gi~~a~~viv~~~ 614 (791)
.....|.++.+.+
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 1356788877654
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.67 Score=50.53 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=56.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-EEccCCCHHHHHh-----cCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLLS-----AGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-v~GD~t~~~~L~~-----agi~~a 606 (791)
++.|+|.|.+|.++|..|. +.|++|.+...||+.++++.+...+. +..|..-|+.++. .-++++
T Consensus 3 kI~ViGaGswGTALA~~la----------~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLA----------RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGA 72 (329)
T ss_pred eEEEEcCChHHHHHHHHHH----------hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcC
Confidence 6899999999999999998 88999999999999999987643232 2335544443321 123569
Q ss_pred cEEEEEeCCH
Q 003861 607 KAVMIMYTDK 616 (791)
Q Consensus 607 ~~viv~~~~d 616 (791)
|.+++++++.
T Consensus 73 d~iv~avPs~ 82 (329)
T COG0240 73 DIIVIAVPSQ 82 (329)
T ss_pred CEEEEECChH
Confidence 9999999875
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.29 Score=53.17 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH---HHHh-----cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRK-----LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~---~~~~-----~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.| .|-+|+.+++.|. ++|++|++++.|++..+ .+.. ....++.||.+|++.++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 73 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLL----------QRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV- 73 (322)
T ss_pred CEEEEECChHHHHHHHHHHHH----------HCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-
Confidence 4689998 5999999999998 88999998887765422 2211 2467899999999888765
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+|+-+.
T Consensus 74 ~~~~d~Vih~A 84 (322)
T PLN02662 74 VDGCEGVFHTA 84 (322)
T ss_pred HcCCCEEEEeC
Confidence 34678776655
|
|
| >TIGR00841 bass bile acid transporter | Back alignment and domain information |
|---|
Probab=92.02 E-value=20 Score=38.64 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhh
Q 003861 167 WGILFLLFEMGLELSLARLKALAK 190 (791)
Q Consensus 167 lgl~~lLF~~Gleldl~~Lk~~~~ 190 (791)
..+.+++|..|+.++++++++..+
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~ 35 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLR 35 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHh
Confidence 348899999999999999998765
|
Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria. |
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.36 Score=51.48 Aligned_cols=73 Identities=12% Similarity=0.047 Sum_probs=56.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+. ....+.+|.+|++.++++
T Consensus 5 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAAL----------AAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CEEEEecCCChHHHHHHHHHH----------hCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 45888887 889999999998 8899999999999987766543 366789999999887653
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 75 ~~~~~d~vv~~ag 87 (277)
T PRK06180 75 TFGPIDVLVNNAG 87 (277)
T ss_pred HhCCCCEEEECCC
Confidence 1235677765543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.1 Score=47.09 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=57.1
Q ss_pred EEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 534 VVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 534 viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++|.| -|..|+.+++.|. +.|++|++.-.+++...... .+..+..+|.++++++..+ .+..+.++..
T Consensus 3 ilV~GatG~~G~~~~~~L~----------~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a-~~G~~~~~~i 70 (275)
T COG0702 3 ILVTGATGFVGGAVVRELL----------ARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAG-AKGVDGVLLI 70 (275)
T ss_pred EEEEecccchHHHHHHHHH----------hCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHH-hccccEEEEE
Confidence 45555 5999999999998 78999999999999999888 8999999999999999865 4555554444
Q ss_pred eC
Q 003861 613 YT 614 (791)
Q Consensus 613 ~~ 614 (791)
.+
T Consensus 71 ~~ 72 (275)
T COG0702 71 SG 72 (275)
T ss_pred ec
Confidence 44
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.34 Score=53.56 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=52.1
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCC-CHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDAS-RPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t-~~~~L~~agi~~a~~v 609 (791)
+++|.|. |-+|+.+++.|.+ +.|++|+++|.+++...... ..+++++.+|.+ +.+.++++ ++++|+|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~---------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~V 72 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILE---------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVI 72 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHh---------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEE
Confidence 5899997 9999999999971 34799999998776654443 346889999998 66666554 4578887
Q ss_pred E
Q 003861 610 M 610 (791)
Q Consensus 610 i 610 (791)
|
T Consensus 73 i 73 (347)
T PRK11908 73 L 73 (347)
T ss_pred E
Confidence 7
|
|
| >COG2985 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.3 Score=50.23 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcC-C-----ChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHH---HHHhhh
Q 003861 120 FLAVTVIVVPVFKIAR-A-----SPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLAR---LKALAK 190 (791)
Q Consensus 120 lL~~a~l~~~l~~rl~-l-----P~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~---Lk~~~~ 190 (791)
.+++...++..+.|+| . -...|-+++|.+++.+|.--+.+.+.+ |+|++++.+.+|+|--+.. +|+.++
T Consensus 12 aLvvvl~lgl~~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~~~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~Gl 89 (544)
T COG2985 12 ALFVVLALGLGFGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINTDMLHF--ELGLILFVYTIGLEAGPGFFSSFRKSGL 89 (544)
T ss_pred HHHHHHHHHhhhceeEEeccccccchhhHhHHHHHhcccccccccchhhh--hhhhhHhhhhhhheecccHhHHHHHhhh
Confidence 4445555566666766 2 234567777888888775434445544 9999999999999987754 455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCC
Q 003861 191 FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGEL 267 (791)
Q Consensus 191 ~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~ 267 (791)
+-..++++-++... ..+.+ ...+++++ .+.....+-|+.-+...-+.+..++++.+..
T Consensus 90 ~~~~~allivi~~~-~~a~~------------l~k~~~~~------~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 90 NLNAFALLIVIAAL-LLAWV------------LHKLFGID------LGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred HHHHHHHHHHHHHH-HHHHH------------HHhhcCCC------HHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 55555554432222 11211 23455532 2334555556665666666777888887754
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.76 Score=46.92 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=65.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.+.|+|.|++|..+++.+. +.|++|++--. +|+..+.+.+.-.+.+.|- +.++ -++.+|.|+.
T Consensus 3 ~~~i~GtGniG~alA~~~a----------~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-----A~~~aDVVvL 66 (211)
T COG2085 3 IIAIIGTGNIGSALALRLA----------KAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-----AAALADVVVL 66 (211)
T ss_pred EEEEeccChHHHHHHHHHH----------hCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-----HHhcCCEEEE
Confidence 5789999999999999998 89999999944 4555555444323333331 1122 2367898988
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
+.+= +....+...+++...+ +|+.-+.++..
T Consensus 67 AVP~-~a~~~v~~~l~~~~~~-KIvID~tnp~~ 97 (211)
T COG2085 67 AVPF-EAIPDVLAELRDALGG-KIVIDATNPIE 97 (211)
T ss_pred eccH-HHHHhHHHHHHHHhCC-eEEEecCCCcc
Confidence 8875 5566667777776554 88888888743
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.92 E-value=1 Score=52.74 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-----------HhcCCC----------EEEc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-----------RKLGFP----------ILYG 590 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-----------~~~~~~----------~v~G 590 (791)
+++.|+|.|.+|..+|..+. ..|++|++.|.+++.+++. .+.|.- -+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la----------~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA----------QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 57999999999999999998 8899999999999998774 233310 0111
Q ss_pred cCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEE
Q 003861 591 DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQ-RLRLAFPAIPIYA 637 (791)
Q Consensus 591 D~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~-~ar~l~p~~~iia 637 (791)
. ++. ++ +.+||.||-+..+|.+--..+. .+.+..+.-.|++
T Consensus 78 ~-~~~---~~--~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 78 V-EAL---AD--LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred e-CCH---HH--hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 122 22 4589999999988754333322 2333332224665
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.52 Score=54.78 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-------------HHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-------------PAV 597 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-------------~~~ 597 (791)
..+++|+|+|+.|...++.++ ..|..|+++|.++++.+.+++.|...+.-|..+ ++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak----------~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 468999999999999999998 889999999999999999998888876666422 111
Q ss_pred H------HhcCCCCCcEEEEEe---CCHHHHHHHHHHHHHhCCCCcEE
Q 003861 598 L------LSAGITSPKAVMIMY---TDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 598 L------~~agi~~a~~viv~~---~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
. -.-.++++|.+|-+. +...--+..-...+.+.|+..|+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 111357799887766 32221233334466666664433
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.3 Score=46.33 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=61.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChh-------------------hH----HHHHh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS-------------------VV----KESRK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~-------------------~v----~~~~~--~~ 584 (791)
+.+|+|+|+|-+|..+++.|. ..|. +++++|.|.= ++ +++++ ..
T Consensus 11 ~~~VlVvG~GGvGs~va~~La----------r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALA----------RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 568999999999999999998 6777 7899997741 11 12222 12
Q ss_pred CC--EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 585 FP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 585 ~~--~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.. .+....+ ++...+.--+++|.||.++++-+.-..+...+++.+ +++|..
T Consensus 81 ~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s 133 (231)
T cd00755 81 CEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISS 133 (231)
T ss_pred cEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEE
Confidence 22 2333333 233333333468999888888776666777777765 666653
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.14 Score=50.71 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=43.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD 591 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD 591 (791)
.+.+++|.|.|+.|+..++.+. ..|.+|+++|.++++.++.+..+...+.-+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~----------~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAK----------GLGAEVVVPDERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSHHHHHHHHHTTTEESEET
T ss_pred CCeEEEEECCCHHHHHHHHHHh----------HCCCEEEeccCCHHHHHhhhcccCceEEEc
Confidence 3468999999999999999998 899999999999999988887766655554
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.1 Score=48.78 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
+.++.|+|.|.+|+.+++.|. +.|++|.+.|.+++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~----------~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLAS----------ANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHH----------HCCCEEEEEeCCCC
Confidence 346999999999999999998 88999999998764
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.9 Score=45.07 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=59.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---Cc-EEEEcC-ChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WP-FVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~-vvvID~-d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++.|+|+|++|+.+++.|. +.+ .+ +++.+. ++++.+.+.+ .+... .. +..+.+ ++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-----~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLL----------KTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TT--DWKQHV-----TS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHH----------hCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eC--ChHHHH-----hc
Confidence 46999999999999999986 443 23 566765 5777777765 34332 21 122333 57
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~ 650 (791)
+|.|+++++++.. -.++..++...++ ++++....--..+.+++
T Consensus 67 ~DiViiavp~~~~-~~v~~~l~~~~~~-~~vis~~~gi~~~~l~~ 109 (245)
T PRK07634 67 VDTIVLAMPPSAH-EELLAELSPLLSN-QLVVTVAAGIGPSYLEE 109 (245)
T ss_pred CCEEEEecCHHHH-HHHHHHHHhhccC-CEEEEECCCCCHHHHHH
Confidence 8999999997644 3333444443333 45554444444444554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.87 Score=50.27 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|++|+.+|+.|. ..|.+|++.|.+++..... .. + .++ +++ -++++|.|++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~----------~~G~~V~~~d~~~~~~~~~----~~--~--~~~---l~e-ll~~aDiVil 204 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA----------GFGATITAYDAYPNKDLDF----LT--Y--KDS---VKE-AIKDADIISL 204 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCChhHhhhh----hh--c--cCC---HHH-HHhcCCEEEE
Confidence 36999999999999999998 8999999999988653211 00 0 112 222 2467899999
Q ss_pred EeCCHHHH--HHHHHHHHHhCCCCc
Q 003861 612 MYTDKKRT--IEAVQRLRLAFPAIP 634 (791)
Q Consensus 612 ~~~~d~~n--~~~~~~ar~l~p~~~ 634 (791)
+.+...++ +.-......+.++..
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gav 229 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAI 229 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcE
Confidence 98876543 333333344445533
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.66 Score=43.08 Aligned_cols=87 Identities=22% Similarity=0.172 Sum_probs=51.4
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHhcC--C-CEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLG--F-PILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~~~--~-~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+| .|..|+.+++.|. +..+.+++.+ +.+++.-+.+++.+ . +..+.+. +.+.++ ..++|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~---------~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~D 67 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLA---------EHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE---ELAVD 67 (122)
T ss_pred CEEEECCCChHHHHHHHHHh---------cCCCceEEEEEechhhcCcCHHHHCccccccccccc-ccCChh---hcCCC
Confidence 478999 5999999999997 2468888877 65544433443322 1 1222233 223333 25889
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPA 632 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~ 632 (791)
.++++++++...-.+....+...++
T Consensus 68 vV~~~~~~~~~~~~~~~~~~~~~~g 92 (122)
T smart00859 68 IVFLALPHGVSKEIAPLLPKAAEAG 92 (122)
T ss_pred EEEEcCCcHHHHHHHHHHHhhhcCC
Confidence 9999999874433322233444555
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.37 Score=50.71 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=56.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhc--C---
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSA--G--- 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~a--g--- 602 (791)
+++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++ +
T Consensus 3 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFA----------AEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5788875 789999999998 889999999999998777654 2467889999998877653 2
Q ss_pred --CCCCcEEEEEeC
Q 003861 603 --ITSPKAVMIMYT 614 (791)
Q Consensus 603 --i~~a~~viv~~~ 614 (791)
..+.|.+|-+.+
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 245687776553
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.37 Score=50.43 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhcC-
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~ag- 602 (791)
.++++|.|. |.+|+.+++.|. ++|++|++++.++++.+.+.+ ....++.+|.++++.++++-
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLA----------QAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 357788876 999999999998 789999999999988765543 24668899999998776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 79 HAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 235677776554
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.38 Score=49.46 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=54.3
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc----CCCCC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA----GITSP 606 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a----gi~~a 606 (791)
.++|.| .|.+|+.+++.|. +.|++|++++.+++..+.+.+ .+..+..+|.+|++.++++ .=.+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLL----------ERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred EEEEeCCCchHHHHHHHHHH----------hCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 577777 5899999999998 789999999999887765543 3577788999998766543 11357
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.++...
T Consensus 73 d~vi~~a 79 (225)
T PRK08177 73 DLLFVNA 79 (225)
T ss_pred CEEEEcC
Confidence 8777654
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.37 Score=53.97 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCCEEEccCCCHHHH
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAVL 598 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~~v~GD~t~~~~L 598 (791)
.+.++|.|. |-+|+.+++.|. ++|++|+++..+++..+.+++ .+..++.+|.+|++.+
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~----------~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l 122 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLL----------RHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESL 122 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHH
Confidence 456888887 899999999998 889999887666665444332 1467889999999988
Q ss_pred HhcCCCCCcEEE
Q 003861 599 LSAGITSPKAVM 610 (791)
Q Consensus 599 ~~agi~~a~~vi 610 (791)
+++ ++++|.++
T Consensus 123 ~~~-i~~~d~V~ 133 (367)
T PLN02686 123 HEA-FDGCAGVF 133 (367)
T ss_pred HHH-HHhccEEE
Confidence 764 34455544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.8 Score=43.43 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+++|+|+|..|..+++.|. ..|. +++++|.|.=... |..+.- -....+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~----------~~Gv~~i~lvD~d~v~~~------------nl~r~~-----~~~~~~v- 53 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA----------RSGVGKITLVDDDIVEPS------------NLNRQF-----LYTEEDV- 53 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH----------HHTTSEEEEEESSBB-GG------------GCCTCT-----TS-GGGT-
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HhCCCceeecCCcceeec------------cccccc-----ccccccc-
Confidence 347999999999999999998 6787 6889997643222 111110 1111121
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
.......+...+++.||.+++.+...+. ++...+- .+.|.||.-.
T Consensus 54 -----G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-~~~d~vi~~~ 100 (135)
T PF00899_consen 54 -----GKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELL-KDYDIVIDCV 100 (135)
T ss_dssp -----TSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHH-HTSSEEEEES
T ss_pred -----hhHHHHHHHHHHHHhcCceeeeeeecccccccccccc-cCCCEEEEec
Confidence 1234555678899999999988866554 3333333 2789888643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.42 Score=49.99 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=54.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------g 602 (791)
.++|.|. |..|..+++.|. ++|++|++++.+++..+.+.+ .....+.+|.+|++.++++ .
T Consensus 2 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4677775 889999999998 889999999999988766543 2466789999999877653 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|...
T Consensus 72 ~~~id~vi~~a 82 (248)
T PRK10538 72 WRNIDVLVNNA 82 (248)
T ss_pred cCCCCEEEECC
Confidence 24678877554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.62 Score=50.90 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=80.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH-HHHhcC--C-----CEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK-ESRKLG--F-----PILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~-~~~~~~--~-----~~v~GD~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. ..| .+++++|.|+++.+ .+.+.. . ..++ .+|.+ .
T Consensus 2 kI~IIGaG~VG~~~a~~l~----------~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~~-----~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL----------LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDYA-----D 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCHH-----H
Confidence 4889999999999999997 667 58999999998765 232211 1 1112 12332 2
Q ss_pred CCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecC-hhhHHHHHHC-C--CCeEEcC-cHH
Q 003861 603 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQD-MMHLLDLKKA-G--ATDAILE-NAE 662 (791)
Q Consensus 603 i~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~-~~~~~~L~~~-G--ad~Vi~p-~~~ 662 (791)
+++||.++++.+.. ..|.. ++..+++.+|+..++...|- +.....+.+. | -++|+-- ..+
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchh
Confidence 68999999987641 12443 45556667777665555432 2223233333 3 2344432 233
Q ss_pred HHHHHHHHHHhhcCCChHHHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVTFL 685 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~~l 685 (791)
-..|+-+.+-+.+++++..++..
T Consensus 145 Ds~R~~~~la~~~~v~~~~v~~~ 167 (308)
T cd05292 145 DTARFRYLLGEHLGVDPRSVHAY 167 (308)
T ss_pred hHHHHHHHHHHHhCCCccceece
Confidence 34556666666677777665443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.67 Score=52.17 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++.|+|+|++|+.+++.|+ ..|.+|.+.|..+...+..++.+.. +- .+ ++++ ++++|.|++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~----------~fG~~V~~~dr~~~~~~~~~~~g~~--~~--~~---l~el-l~~aDvV~l 254 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLK----------PFDVKLHYTDRHRLPEEVEQELGLT--YH--VS---FDSL-VSVCDVVTI 254 (385)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCchhhHhhcCce--ec--CC---HHHH-hhcCCEEEE
Confidence 46999999999999999998 8999999999876433322333321 11 12 2222 477899988
Q ss_pred EeCCHHHH--HHHHHHHHHhCCCCcEE
Q 003861 612 MYTDKKRT--IEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 612 ~~~~d~~n--~~~~~~ar~l~p~~~ii 636 (791)
..+..+++ +.-......+.++..+|
T Consensus 255 ~lPlt~~T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 255 HCPLHPETEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred cCCCCHHHHHHhCHHHHhcCCCCcEEE
Confidence 88875443 33234444455554433
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.76 Score=56.44 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=51.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++.|+|+|.+|..+++.|. +.| .+|+++|.++++.+.+++.|... -..++. ++ -++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~----------~~G~~~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~---~~-~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALR----------ERGLAREVVAVDRRAKSLELAVSLGVID--RGEEDL---AE-AVSGADVI 67 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCCEEEEEECChhHHHHHHHCCCCC--cccCCH---HH-HhcCCCEE
Confidence 46999999999999999998 667 47999999999988887766431 011222 11 14688999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+++++.+
T Consensus 68 ilavp~~ 74 (735)
T PRK14806 68 VLAVPVL 74 (735)
T ss_pred EECCCHH
Confidence 9998865
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.42 Score=51.09 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=54.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag-- 602 (791)
++.++|.|.|.+|+.+++.|. +|++|+++|.+++..++.. +.+ ...+.+|.+|++.++++=
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-----------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-----------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 457899999999999999994 5999999999987654432 223 456889999998776531
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 71 ~~~~g~id~li~nAG 85 (275)
T PRK06940 71 AQTLGPVTGLVHTAG 85 (275)
T ss_pred HHhcCCCCEEEECCC
Confidence 235787776543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.5 Score=48.86 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhc------C
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~a------g 602 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++. .+.+++.+..++.+|.+|++.++++ .
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLL----------AQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CceEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 346788886 679999999998 889999999988754 4445556778899999998876542 1
Q ss_pred CCCCcEEEEEeC
Q 003861 603 ITSPKAVMIMYT 614 (791)
Q Consensus 603 i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 72 ~~~id~lv~~ag 83 (236)
T PRK06483 72 TDGLRAIIHNAS 83 (236)
T ss_pred CCCccEEEECCc
Confidence 235676666543
|
|
| >PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters | Back alignment and domain information |
|---|
Probab=91.28 E-value=5.2 Score=39.76 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=50.4
Q ss_pred HHcCCChHHHHHHHHHhhcccC----CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHH
Q 003861 132 KIARASPILGFFFAGIVLNQLG----IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 203 (791)
Q Consensus 132 ~rl~lP~ivg~ilaGillGp~g----li~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt 203 (791)
+.+++-...|-+++|+++|.++ ...+....+.+.++|+.++++..|++--++.+...++.-+..-..+++++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~ 94 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT 94 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4466667779999999999753 22355677899999999999999999887665554444333333343333
|
Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.26 E-value=2 Score=45.27 Aligned_cols=124 Identities=20% Similarity=0.169 Sum_probs=74.0
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhH-----HHHHhc-CCCEEEccCCCHHHHHhcCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVV-----KESRKL-GFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v-----~~~~~~-~~~~v~GD~t~~~~L~~agi~ 604 (791)
+++|+|+ ||+|+.+++.+. +..+.+ +-++|..++.. .++... ...+.. ++. ...-..
T Consensus 4 ki~V~Ga~GRMG~~ii~~v~---------~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v---~~~---~~~~~~ 68 (266)
T COG0289 4 KVAVAGASGRMGRTLIRAVL---------EAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV---TDD---LLLVKA 68 (266)
T ss_pred eEEEEcCCChHHHHHHHHHh---------cCCCceEEEEEecCCccccccchhhhccccccCcee---ecc---hhhccc
Confidence 5899999 999999999997 245555 44566665421 111100 011111 111 112346
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE-EecChhhHHHHHHCC--CCeEEcCcHHHHHHHHHHHHh
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQDMMHLLDLKKAG--ATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~~~~~~~~L~~~G--ad~Vi~p~~~~~~~la~~~l~ 673 (791)
++|++ +-.+.++.....+..+.+.... .||- .--++++.+.++++. +--|+.|+...|..+-.++++
T Consensus 69 ~~DV~-IDFT~P~~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~ 138 (266)
T COG0289 69 DADVL-IDFTTPEATLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAE 138 (266)
T ss_pred CCCEE-EECCCchhhHHHHHHHHHcCCC-eEEECCCCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHH
Confidence 78854 5666667777777777776532 3444 334666667776653 445899998877777766654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.43 Score=49.57 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
++++|.|. |.+|+.+++.|. ++|+++++++.+++..+...+ . ...++.+|.+|++.++++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALA----------EAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56777775 899999999998 889999999999886654432 2 356789999999877643
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 78 ~~~~~~~id~vi~~ag 93 (250)
T PRK12939 78 AAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246888877654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.5 Score=54.26 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++++|+|.|+.|..+++.|. +.|.+|++.|.+++ ..+++++.|..+..|+-. .+.+. +.+|
T Consensus 6 k~v~v~G~g~~G~s~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~----~~~d 70 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLH----------KLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LELLD----EDFD 70 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHHhc----CcCC
Confidence 46899999999999999998 89999999997653 235566778877766433 22332 1478
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.+|...+=+.+| .....||+.+ ++|+-+
T Consensus 71 ~vV~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (447)
T PRK02472 71 LMVKNPGIPYTN-PMVEKALEKG--IPIITE 98 (447)
T ss_pred EEEECCCCCCCC-HHHHHHHHCC--CcEEeH
Confidence 776655333333 3456667654 566654
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.88 Score=40.66 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=66.3
Q ss_pred EEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 567 FVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 567 vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
|+++|.|+...+.++ +.|+..+..=.+-.+.++...-...|.+++-..-+ .+-..++..+|+.+|++++++-..+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 578899888765554 35652333333445567777777799888876543 5667788999999999998877744
Q ss_pred --hhhHHHHHHCCCCeEEcCc
Q 003861 642 --MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 642 --~~~~~~L~~~Gad~Vi~p~ 660 (791)
........++|++..+.-.
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHCCCCEEEECC
Confidence 5577788899999876544
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.46 Score=49.50 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ . ....+.+|.+|++.++++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALA----------REGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46888887 999999999998 789999999999876544432 2 345788999999876542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 77 ~~~~~~~id~vi~~ag 92 (250)
T PRK07774 77 TVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1236788876554
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.45 Score=49.93 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.|++..+.+.+. ....+.+|.+|++.++++=
T Consensus 7 ~~vlItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYL----------AEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45788875 899999999998 8899999999999887665432 3567889999998876531
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
....|++|-+.
T Consensus 77 ~~~~id~li~~a 88 (257)
T PRK07067 77 RFGGIDILFNNA 88 (257)
T ss_pred HcCCCCEEEECC
Confidence 23577776654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.5 Score=49.53 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcC-----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~ag----- 602 (791)
.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ .....+.+|.+|++.++++=
T Consensus 4 ~ilItGat~~iG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFL----------AAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred EEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5777776 899999999998 789999999999887665543 34678899999999876421
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (257)
T PRK07074 74 ERGPVDVLVANAG 86 (257)
T ss_pred HcCCCCEEEECCC
Confidence 135788777764
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.45 Score=49.64 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=46.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHh---cCCCEEEccCCCHHHHHh
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK---LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~---~~~~~v~GD~t~~~~L~~ 600 (791)
+++|.| .|.+|+.+++.|. ++|++|++++.++ +..+.+.+ ..+.++.+|.+|++.+++
T Consensus 3 ~vlItGasggiG~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLL----------EKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred EEEEecCCchHHHHHHHHHH----------hcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 677887 4899999999998 7899999999887 44444433 246688999999988764
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.5 Score=49.55 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhc----
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~a---- 601 (791)
.++++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ....+.+|.+|++.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFA----------EAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 357777776 899999999998 8899999999998877665432 236789999999987653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|++|-..+
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 1246888876543
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.42 Score=49.77 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+++..+...+. ....+.+|.+|++.++++
T Consensus 6 k~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFA----------REGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46777776 899999999998 7899999999998876554432 257889999999887653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|+++-+.+
T Consensus 76 ~~~~~~id~vi~~ag 90 (252)
T PRK06138 76 AARWGRLDVLVNNAG 90 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246787776654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.98 Score=49.71 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHH-hcCCCEEEccCC--------------CHHH
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESR-KLGFPILYGDAS--------------RPAV 597 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~-~~~~~~v~GD~t--------------~~~~ 597 (791)
+.|.|||++|+.+++.+.+ ..+.+++. .|.+++....+. ..++..+++... +++-
T Consensus 1 VaInG~GrIGr~varav~~---------~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~ee 71 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTK---------QDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLED 71 (333)
T ss_pred CEEECCcHHHHHHHHHHhh---------CCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHH
Confidence 4689999999999999862 34566665 477777654443 356666553221 1222
Q ss_pred HHhcCCCCCcEEEEEeCCH
Q 003861 598 LLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d 616 (791)
|- +++|.|+.+++..
T Consensus 72 Ll----~~vDiVve~Tp~~ 86 (333)
T TIGR01546 72 LL----EKVDIVVDATPGG 86 (333)
T ss_pred Hh----hcCCEEEECCCCC
Confidence 21 5689888888764
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.43 Score=51.01 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag-- 602 (791)
++++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. +.+ ..++.+|.+|++.++++-
T Consensus 7 k~vlVtGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGA----------ALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46788875 789999999998 88999999999887655443 223 455899999998877641
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
....|.++-..+
T Consensus 77 ~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 77 ALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHcCCCCEEEECCC
Confidence 134677766553
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.5 Score=40.52 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCHHHHHhcCCCCCcEEEEEeCCH---HHHHHHHHHHHHhCC-CCcEEEEecCh-hhHHHHHHCCCCeEEcCcHH
Q 003861 593 SRPAVLLSAGITSPKAVMIMYTDK---KRTIEAVQRLRLAFP-AIPIYARAQDM-MHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 593 t~~~~L~~agi~~a~~viv~~~~d---~~n~~~~~~ar~l~p-~~~iiara~~~-~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+.++..+.+.-.++|.|.++..+. +....++..+|+.+| +++|++--.-. .+.+.+++.|+|.++.+..+
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~ 112 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATE 112 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHH
Confidence 344566666777889877776532 344556788888888 77766633322 23468999999999988753
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.42 Score=54.58 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh----HHHHHhcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~----v~~~~~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++|.|+|+|+.|..+++.|. +.|.+|++.|.++.. .+.+..++..+..|.-.+ ....++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~----------~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~------~~~~~~ 70 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL----------KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD------EDLAEF 70 (448)
T ss_pred CCEEEEEecccccHHHHHHHH----------HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch------hccccC
Confidence 568999999999999999998 899999999988876 223335677777775444 245678
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHh
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l 629 (791)
|.+|..-+=..++- .+..+++.
T Consensus 71 d~vV~SPGi~~~~p-~v~~A~~~ 92 (448)
T COG0771 71 DLVVKSPGIPPTHP-LVEAAKAA 92 (448)
T ss_pred CEEEECCCCCCCCH-HHHHHHHc
Confidence 86655543222222 44455554
|
|
| >COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=29 Score=38.37 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh--HHH-HHHHHHhhcccCC-cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhh
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASP--ILG-FFFAGIVLNQLGI-IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALA 189 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~--ivg-~ilaGillGp~gl-i~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~ 189 (791)
..+..+.+..+.+.++++..+++|. ..| -+++|++.+-.+. +..+ ..+...+-..+=-.+|..+..+.+....
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP---RGLFKAGQVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCC---hHHHHHHHHHHHHHHhhhcCHHHHHHHH
Confidence 3455566778888899999988765 566 7778888875442 2222 5677778888888999999988876544
Q ss_pred h
Q 003861 190 K 190 (791)
Q Consensus 190 ~ 190 (791)
+
T Consensus 85 ~ 85 (352)
T COG3180 85 S 85 (352)
T ss_pred H
Confidence 3
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.58 Score=53.88 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=60.4
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHh--cCCCEEEccCCCHHHHHhcCCC
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRK--LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~--~~~~~v~GD~t~~~~L~~agi~ 604 (791)
+..+.++|+|.|..|..+|+.|. +.|++|.+.|.++. ..+++++ .|..+..|.-. ++.+ +
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~-----~ 67 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLA----------RQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELL-----V 67 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHH----------hCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHh-----c
Confidence 34678999999999999999998 89999999997654 2344555 37777766322 3333 4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
++|.||+...=+.+|- ....+|+.+ ++|+-
T Consensus 68 ~~d~vV~sp~i~~~~p-~~~~a~~~~--i~i~~ 97 (448)
T PRK03803 68 QASEIIISPGLALDTP-ALRAAAAMG--IEVIG 97 (448)
T ss_pred CCCEEEECCCCCCCCH-HHHHHHHCC--CcEEE
Confidence 5787766554334444 345566653 55654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.46 Score=49.77 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
++++|.|. |.+|+.+++.|. ++|++|++.+.+++..+.+. +.+ ...+.+|.+|++.++++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLA----------QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CEEEEECCcchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 56888886 899999999998 78999999999988655433 222 56778999999877654
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 81 ~~~~~~~~d~li~~ag 96 (255)
T PRK07523 81 FEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677776654
|
|
| >TIGR00783 ccs citrate carrier protein, CCS family | Back alignment and domain information |
|---|
Probab=90.87 E-value=30 Score=38.35 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=72.6
Q ss_pred CChHHHHHHHHhHhcCCcc-chhHHHHhhhchHhHH----HHHHHHHHccc-CChHHHHhhh-HHHHHHHHHHHHHHHHH
Q 003861 365 GFSDTLGAFLAGAILAETN-FRTQIEADIRPFRGLL----LGLFFVTTGSS-IDIELLFREW-PNVLALLAGLIIIKTLI 437 (791)
Q Consensus 365 Gls~~LgAflaGl~l~~~~-~~~~i~~~l~~~~~~f----~~lFFv~vG~~-l~l~~l~~~~-~~~l~l~l~~ll~K~l~ 437 (791)
++|+..-+.+.|.++.... ..+++++....+..|+ ....++-+|+. .|++.+.+.. +..+.+++..+++-.+.
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6777777888888887653 3345565555554333 34444555776 7898887643 33444555566667777
Q ss_pred HHHhhhhcCC-CHHHHHHHHHHHhhhh-hHHHHHHHHHHHcCCcc
Q 003861 438 ISAIGPRVGL-TLQESVRIGLLLSQGG-EFAFVVFSLANRLGVLP 480 (791)
Q Consensus 438 ~~~~~~~~~~-~~r~~~~~g~~l~~rG-~~~lvla~~a~~~g~i~ 480 (791)
.++.++++|+ |...++..|+.++.+| .=.+.+.+.+.+.++++
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 7888888886 5555566677775554 34445555555556554
|
These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism. |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.55 Score=49.26 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcC------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG------I 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~ag------i 603 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+...+ .+...+.+|.+|++.++++- .
T Consensus 8 ~~vlItGasggIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLA----------AEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 46888888 899999999998 789999999999887665543 34468899999998765421 2
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-+.+
T Consensus 78 ~~id~vi~~ag 88 (255)
T PRK06057 78 GSVDIAFNNAG 88 (255)
T ss_pred CCCCEEEECCC
Confidence 45677766553
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.5 Score=49.50 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++
T Consensus 3 k~~lItGas~giG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLV----------EDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 35677765 789999999998 889999999999877655432 2345788999999876542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678777665
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.36 Score=51.05 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=55.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--C----CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--G----IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--g----i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+. ..+..++.+|.+|++.++++ + ..
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA----------RAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 45777775 899999999998 889999999999876543 24678999999999887764 1 23
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
..|.+|.+.+
T Consensus 73 ~~d~li~~ag 82 (270)
T PRK06179 73 RIDVLVNNAG 82 (270)
T ss_pred CCCEEEECCC
Confidence 5787776654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.55 Score=49.78 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c-CCCEEEccCCCHHHHHhc------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~-~~~~v~GD~t~~~~L~~a------g 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|++.+.|++..++..+ . ...++.+|.+|++.++++ .
T Consensus 6 ~~ilVtGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALA----------ALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 46888887 889999999998 789999999999988776543 2 377889999999876432 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
....|.+|-..
T Consensus 76 ~~~id~li~~a 86 (273)
T PRK07825 76 LGPIDVLVNNA 86 (273)
T ss_pred cCCCCEEEECC
Confidence 24567776554
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.59 Score=54.05 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+++.|+|.|..|.. +|+.|. +.|++|.+.|.++. ..+++++.|..+..|. +++.+ +++|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~ 69 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLL----------NLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADV 69 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHH----------hCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCE
Confidence 357999999999999 799998 89999999998654 3445666787776544 44433 46887
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
||+..+=+.+|- ....||+.+ ++|+.
T Consensus 70 vv~spgi~~~~~-~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 70 VVYSSAIPDDNP-ELVAARELG--IPVVR 95 (461)
T ss_pred EEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 766654444443 355667664 56655
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.2 Score=45.30 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhh---------------------H----HHHHh--
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSV---------------------V----KESRK-- 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~---------------------v----~~~~~-- 582 (791)
+.+|+|+|+|-.|.++++.|. ..|.. ++++|.|.-. + +++++
T Consensus 19 ~s~VlviG~gglGsevak~L~----------~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV----------LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 568999999999999999998 67775 8888877211 1 11222
Q ss_pred cCC--CEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCc-EEEEe
Q 003861 583 LGF--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIP-IYARA 639 (791)
Q Consensus 583 ~~~--~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~-iiara 639 (791)
++. ..+..+.++.+.....-++++|.||.+.++.+....+-..+++.+ ++ +.+..
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~ 146 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCAT 146 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEe
Confidence 222 233334431111112225688988888777666677777788875 45 44443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.7 Score=46.24 Aligned_cols=137 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH-----HHHh---cCCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-----ESRK---LGFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~-----~~~~---~~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..+. ..|. +++++|.|++..+ .... .+.. -+.+. +|.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la----------~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d~~---- 70 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV----------LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NNYE---- 70 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CCHH----
Confidence 357999999999999999987 5664 8999999998532 1111 1222 23321 2322
Q ss_pred cCCCCCcEEEEEeCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHHHHC-CC--Ce
Q 003861 601 AGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDLKKA-GA--TD 655 (791)
Q Consensus 601 agi~~a~~viv~~~~--------------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~--~~~L~~~-Ga--d~ 655 (791)
.+++||.||.+.+. | ..|.. ++..+++..|+. ++..+.|+.+ ...+.+. |- ++
T Consensus 71 -~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~sNP~di~t~~~~~~sg~p~~r 148 (321)
T PTZ00082 71 -DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVITNPLDVMVKLLQEHSGLPKNK 148 (321)
T ss_pred -HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHhcCCChhh
Confidence 35899988886522 1 23443 455666677875 4444445553 3334333 43 45
Q ss_pred EEcCc-HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 656 AILEN-AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 656 Vi~p~-~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
|+--- ..-+.++-+.+-+.+++++..++.
T Consensus 149 viGlgt~lds~R~~~~la~~l~v~~~~v~~ 178 (321)
T PTZ00082 149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVHA 178 (321)
T ss_pred EEEecCcccHHHHHHHHHHHhCCCccccee
Confidence 55443 333456666677777888866544
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.56 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHHhcCCCEEEccCCCHHHHHhc-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRKLGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~~~~~~~v~GD~t~~~~L~~a----- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.|++..+ +..+.+..++.+|.+|++.++++
T Consensus 8 k~vlItGatg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLA----------ARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHH----------HCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 35677765 999999999998 78999999999887643 33345678889999998877643
Q ss_pred -CCCCCcEEEEEeC
Q 003861 602 -GITSPKAVMIMYT 614 (791)
Q Consensus 602 -gi~~a~~viv~~~ 614 (791)
.....|+++-..+
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 1236777766543
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.88 Score=48.69 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~ 587 (791)
....+=-+|.|.+|..++..|. +.|++|+|.|.+.++++++.+.|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLi----------k~G~kVtV~dr~~~k~~~f~~~Ga~v 81 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLI----------KAGYKVTVYDRTKDKCKEFQEAGARV 81 (327)
T ss_pred ccceeeEEeeccchHHHHHHHH----------HcCCEEEEEeCcHHHHHHHHHhchhh
Confidence 3567888999999999999998 89999999999999999988776443
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.52 Score=48.79 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHh------cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~ag- 602 (791)
++++|.|. |.+|+.+++.|. +.|++++++ +.+++..+.+.+ ....++.+|.+|++.++++=
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~----------~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLA----------KEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46788876 899999999998 789999999 998887655432 12567889999999776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
....|++|-..+
T Consensus 76 ~~~~~~~~id~vi~~ag 92 (247)
T PRK05565 76 QIVEKFGKIDILVNNAG 92 (247)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 125787776543
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=2.1 Score=46.87 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH---HHHHhcC-CCEEEc-cCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRKLG-FPILYG-DASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v---~~~~~~~-~~~v~G-D~t~~~~L~~agi~~a 606 (791)
+++|+|. |++|+.++..|... ...+.+++++|.++... -++.+.+ ...+.| +.+|. .+ .++++
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~-------~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~ 70 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQ-------LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGA 70 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcC-------CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCC
Confidence 5889999 99999999877410 03567899999876531 1233322 234555 23331 12 23679
Q ss_pred cEEEEEeCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH------H-HHCC--CCeEEcCcHH
Q 003861 607 KAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD------L-KKAG--ATDAILENAE 662 (791)
Q Consensus 607 ~~viv~~~~d-----------~~n~----~~~~~ar~l~p~~~iiara~~~~~~~~------L-~~~G--ad~Vi~p~~~ 662 (791)
|.||++.+.. ..|. .++..+++.+|+ .++..+.||.+.-- + +..| .++|+---..
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~L 149 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTL 149 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecH
Confidence 9999988751 1232 345566777777 56777777773211 1 2223 3445554444
Q ss_pred HHHHHHHHHHhhcCCChHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~ 683 (791)
-..|+-+.+-+.+++++..++
T Consensus 150 ds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 150 DVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred HHHHHHHHHHHHhCCChhheE
Confidence 445666666666777776544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=90.69 E-value=2 Score=42.91 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=52.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh------------------hhHH----HHHh--cCCC-
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVK----ESRK--LGFP- 586 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~------------------~~v~----~~~~--~~~~- 586 (791)
+|+|+|+|-+|..+++.|. ..|.. ++++|.|. .+++ ++++ ....
T Consensus 1 ~VlViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i 70 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA----------RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI 70 (174)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEE
Confidence 5899999999999999998 78885 99999986 1121 1222 1222
Q ss_pred -EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 587 -ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 587 -~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
.+..+.+++ .+++ -++++|.||.++++.+.-..+...+.+.
T Consensus 71 ~~~~~~~~~~-~~~~-~l~~~DlVi~~~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 71 EAINIKIDEN-NLEG-LFGDCDIVVEAFDNAETKAMLAESLLGN 112 (174)
T ss_pred EEEEeecChh-hHHH-HhcCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 233333332 2222 3567888888877655444455555555
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0679 Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.68 E-value=29 Score=37.92 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=84.1
Q ss_pred ChHHHHHHHHhHhcCCc--cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhh-hHHHHHHHHHHHHHHHHHHHHhh
Q 003861 366 FSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIG 442 (791)
Q Consensus 366 ls~~LgAflaGl~l~~~--~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~-~~~~l~l~l~~ll~K~l~~~~~~ 442 (791)
.++.+=|++.|+.+... +..+.+.+.++.+.+...|+-.+.+|+.++....... +..+......-++..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666642 4445677888888999999999999999999555443 33333333334677777777878
Q ss_pred hhcCCCHHHHHHHHH-HHhhhhhHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhHhHHHH
Q 003861 443 PRVGLTLQESVRIGL-LLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 503 (791)
Q Consensus 443 ~~~~~~~r~~~~~g~-~l~~rG~~~lvla~~a~~~g~i~~~~~~~iv~~vvlt~iltpll~~ 503 (791)
..+|++..+...+=+ ...|.+..+.+++.. .+.-.+...+.+..+..++.+..|....
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877665521111 136666666666544 4444444455555556666666655543
|
|
| >TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain | Back alignment and domain information |
|---|
Probab=90.66 E-value=4.2 Score=39.74 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHhhcccCCc------CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhh
Q 003861 136 ASPILGFFFAGIVLNQLGII------RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 190 (791)
Q Consensus 136 lP~ivg~ilaGillGp~gli------~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~ 190 (791)
+-...|-+++|+++|.++-. -+......+.++|+.++++.+|++--.+.+...++
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~ 81 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD 81 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33467899999999986531 13456778999999999999999998876655444
|
This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.62 Score=46.62 Aligned_cols=87 Identities=10% Similarity=-0.028 Sum_probs=58.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc--C---
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--G--- 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--g--- 602 (791)
+++|.|...+|..+++.|. +.|++|.+.+.+++..+.+.. .....+.+|.+|++.++++ +
T Consensus 2 ~vlVtGGtG~gg~la~~L~----------~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~ 71 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLC----------EKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE 71 (177)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5788998889899999998 899999999999888766543 2345667899998776543 1
Q ss_pred -CCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 603 -ITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 603 -i~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.+..|.++.....+- .-.++..+++.+
T Consensus 72 ~~g~id~lv~~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 72 KNGPFDLAVAWIHSSA-KDALSVVCRELD 99 (177)
T ss_pred HcCCCeEEEEeccccc-hhhHHHHHHHHc
Confidence 134556655555442 222344455544
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.65 E-value=1 Score=49.02 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=78.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHH----hcC----CC-EEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----KLG----FP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~----~~~----~~-~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..++..+. ..|. +++++|.|+++.+... +.. .. -+.. .+|. +
T Consensus 3 ~KI~VIGaG~vG~~ia~~la----------~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~---~-- 66 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA----------LKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY---E-- 66 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH---H--
Confidence 37899999999999999997 5554 9999999998753321 111 11 1111 1222 2
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcCc-
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILEN- 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p~- 660 (791)
.+++||.+|++.+. | ..|..+ +..+++..|+..++ -+.|+.+. ..+.+ .|- .+|+---
T Consensus 67 ~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~vi-v~tNP~d~~~~~~~~~s~~~~~~viG~gt 145 (307)
T PRK06223 67 DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVI-VVTNPVDAMTYVALKESGFPKNRVIGMAG 145 (307)
T ss_pred HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHhCCCcccEEEeCC
Confidence 25899988887531 1 244443 44455566764333 34444432 23333 343 4565542
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
..-..++-+.+-+.++++++.++.
T Consensus 146 ~lds~r~~~~la~~l~v~~~~v~~ 169 (307)
T PRK06223 146 VLDSARFRTFIAEELNVSVKDVTA 169 (307)
T ss_pred CcHHHHHHHHHHHHhCcChhhCcc
Confidence 333456666666777888866554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.62 E-value=2 Score=47.74 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH----HHHhc----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK----ESRKL----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~----~~~~~----~~~~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..++-.|. ..+ .+++++|.+++..+ ++.+. +..-+.++ +|.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~----------~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~-~dy~----- 101 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTIL----------TQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS-TDYA----- 101 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC-CCHH-----
Confidence 58999999999999999886 333 37999999987642 22221 11233332 2222
Q ss_pred CCCCCcEEEEEeCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH---HHHCC--CCeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD---LKKAG--ATDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~~~~---L~~~G--ad~Vi~p-~ 660 (791)
.+++||.||++.+. | ..|. .++..+++.+|+..++ .+.|+.+.-- .+..| .++|+-- .
T Consensus 102 ~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi-vvtNPvdv~t~~~~k~sg~p~~rviG~gt 180 (350)
T PLN02602 102 VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL-IVSNPVDVLTYVAWKLSGFPANRVIGSGT 180 (350)
T ss_pred HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCchHHHHHHHHHHhCCCHHHEEeecc
Confidence 36899988888553 2 2454 3566677778885544 4445544322 34455 4556544 2
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
.+-..|+-+.+-+.+++++..++.
T Consensus 181 ~LDs~R~r~~lA~~l~v~~~~V~~ 204 (350)
T PLN02602 181 NLDSSRFRFLIADHLDVNAQDVQA 204 (350)
T ss_pred hHHHHHHHHHHHHHhCCCccceee
Confidence 333456666666677777766544
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.55 Score=48.76 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a-- 601 (791)
.+.++|.|. |.+|+.+++.|. ++|..|+++|.++++.+... +.+ ...+..|.+|++.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLA----------QKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 347888887 999999999998 78999999999987655443 222 45688999998766431
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2246787776544
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.47 Score=54.27 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|.+|+.+++.|. ..|. ++++++.++++.+.+.+ .+..++ +.+.+.+ .+.++|.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aDv 245 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLA----------EKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEADI 245 (423)
T ss_pred CCEEEEECchHHHHHHHHHHH----------HCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCCE
Confidence 457999999999999999998 7786 79999999998776544 343222 2233332 3468999
Q ss_pred EEEEeCCHHH
Q 003861 609 VMIMYTDKKR 618 (791)
Q Consensus 609 viv~~~~d~~ 618 (791)
||.+|+.+..
T Consensus 246 VI~aT~s~~~ 255 (423)
T PRK00045 246 VISSTGAPHP 255 (423)
T ss_pred EEECCCCCCc
Confidence 9999887543
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.5 Score=49.12 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=53.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--C
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a--g 602 (791)
+++|.| -|.+|+.+++.|. +.|++|++++.+++..+...+ ....++.+|.+|++-++++ .
T Consensus 3 ~vlItGas~giG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 3 KILIIGATSDIARACARRYA----------AAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 577777 5999999999998 889999999999987654432 2356889999999877653 1
Q ss_pred C-CCCcEEEEEe
Q 003861 603 I-TSPKAVMIMY 613 (791)
Q Consensus 603 i-~~a~~viv~~ 613 (791)
+ ++.|.++...
T Consensus 73 ~~~~~d~vv~~a 84 (243)
T PRK07102 73 LPALPDIVLIAV 84 (243)
T ss_pred HhhcCCEEEECC
Confidence 1 2457777543
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.56 E-value=3.5 Score=43.96 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHH-HHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVK-ESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~-~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.++|+|++|+.++.-|. +.| .++++.|.++++.+ ...+.|... .+|.+.. ++++|
T Consensus 3 ~IgfIG~G~Mg~Ai~~gl~----------~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~----~~~ad 64 (266)
T COG0345 3 KIGFIGAGNMGEAILSGLL----------KSGALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEA----VEEAD 64 (266)
T ss_pred eEEEEccCHHHHHHHHHHH----------hcCCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHH----HhhCC
Confidence 5789999999999999998 566 68999999999987 444565552 3332222 36788
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAG 652 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~G 652 (791)
.++++..- ..-..++..++...++-.+|.-+---.-...-+..|
T Consensus 65 vv~LavKP-q~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~ 108 (266)
T COG0345 65 VVFLAVKP-QDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLG 108 (266)
T ss_pred EEEEEeCh-HhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence 88888754 222233344444334433444444333333333333
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.3 Score=50.61 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=50.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH----------HhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL----------LSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L----------~~ag 602 (791)
++-|+|.|.+|..+|..|. + |++|+++|.|+++++.+. .|...+. +...++.. .+ .
T Consensus 8 kI~vIGlGyvGlpmA~~la----------~-~~~V~g~D~~~~~ve~l~-~G~~~~~-e~~~~~l~~~g~l~~t~~~~-~ 73 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFG----------K-SRQVVGFDVNKKRILELK-NGVDVNL-ETTEEELREARYLKFTSEIE-K 73 (425)
T ss_pred eEEEECcCcchHHHHHHHh----------c-CCEEEEEeCCHHHHHHHH-CcCCCCC-CCCHHHHHhhCCeeEEeCHH-H
Confidence 5899999999999999996 4 699999999999999998 3432211 11111110 11 2
Q ss_pred CCCCcEEEEEeCCH
Q 003861 603 ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 i~~a~~viv~~~~d 616 (791)
++++|.++++.+++
T Consensus 74 ~~~advvii~Vptp 87 (425)
T PRK15182 74 IKECNFYIITVPTP 87 (425)
T ss_pred HcCCCEEEEEcCCC
Confidence 67999999998865
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.49 E-value=3.3 Score=45.45 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhc----CCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKL----GFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~----~~~~v~GD~t~~~~L~ 599 (791)
...++.|+|.|.+|..++..|. ..|. +++++|.+++..+ ++++. .-..+.+ .+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~----------~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~~--- 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV----------NQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDYS--- 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCHH---
Confidence 3458999999999999999997 5566 7999999888642 22221 1112222 2322
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HHH-HCCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DLK-KAGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~~--~L~-~~Ga--d~Vi~p 659 (791)
..++||.+|++.+. | ..|..+ +..+++.+|+..++. +.||.+.- .+. ..|. .+|+--
T Consensus 70 --~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~viv-vsNP~d~~~~~~~k~sg~p~~~viG~ 146 (315)
T PRK00066 70 --DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLV-ASNPVDILTYATWKLSGFPKERVIGS 146 (315)
T ss_pred --HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-ccCcHHHHHHHHHHHhCCCHHHEeec
Confidence 25799999887663 1 245554 455666678765444 44554332 222 2332 234322
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..|+-+.+-+.+++++..+
T Consensus 147 gt~LDs~R~~~~la~~l~v~~~~V 170 (315)
T PRK00066 147 GTSLDSARFRYMLSEKLDVDPRSV 170 (315)
T ss_pred CchHHHHHHHHHHHHHhCCCcccE
Confidence 22223445555555666666544
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.62 Score=53.59 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHh--cCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRK--LGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~--~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.++++|+|.|..|..+++.|. +.|++|++.|.++.. .+++++ .|..+..|+..+ +.+ .++
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~ 68 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLR----------KNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGF 68 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCC
Confidence 347999999999999999998 899999999987653 344544 377777665432 222 568
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.||...+=+.+|- ....||+.+ ++++.+
T Consensus 69 d~vv~spgi~~~~p-~~~~a~~~~--i~v~~~ 97 (445)
T PRK04308 69 DILALSPGISERQP-DIEAFKQNG--GRVLGD 97 (445)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC--CcEEEh
Confidence 88877766555554 455566653 556543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.54 Score=49.22 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+.+++..++..+ . ....+.+|.+|++..+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYV----------EAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46788887 789999999998 899999999999887665543 1 345778999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 80 ~~~~~g~id~lv~~a 94 (253)
T PRK05867 80 VTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 124678777654
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=90.43 E-value=11 Score=43.28 Aligned_cols=94 Identities=24% Similarity=0.322 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++++|+|.|.-|+.+++.|.+ ..+.|++++ .+|.|++..... .|.+++ |+..| .-+.+.-.++|.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~d--l~~~i~~~~vd~V 195 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLAR-------NPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDD--LEELIREGEVDEV 195 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHh-------CccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHH--HHHHHHhcCCCEE
Confidence 5679999999999999999962 012355554 467666543222 345543 44332 2222334668888
Q ss_pred EEEeCCHH--HHHHHHHHHHHhCCCCcEE
Q 003861 610 MIMYTDKK--RTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 610 iv~~~~d~--~n~~~~~~ar~l~p~~~ii 636 (791)
+++.++.+ .-..+...+++.+.+++++
T Consensus 196 iIA~p~~~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 196 YIALPLAAEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred EEeeCcccHHHHHHHHHHHHhcCCEEEEe
Confidence 88887642 2234555666665443443
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.56 Score=49.68 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.|++..++..+ .....+.+|.+|++.++++
T Consensus 9 k~~lItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLA----------RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 35677877 579999999998 899999999999887655432 1356789999999876653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 79 ~~~~~g~iD~lv~na 93 (263)
T PRK08339 79 ELKNIGEPDIFFFST 93 (263)
T ss_pred HHHhhCCCcEEEECC
Confidence 123567766554
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.91 Score=49.16 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCCh---hhHHHHHh----c--CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP---SVVKESRK----L--GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~---~~v~~~~~----~--~~~~v~GD~t~~~~L~~ 600 (791)
.++++|+|.|..|+.++..|. +.|.. +++++.++ ++.+++.+ . ...+...|.++++.+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La----------~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCA----------LDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 357999999999999999998 78886 99999986 55544332 2 12345578777766643
Q ss_pred cCCCCCcEEEEEeC
Q 003861 601 AGITSPKAVMIMYT 614 (791)
Q Consensus 601 agi~~a~~viv~~~ 614 (791)
.++++|.+|-+|+
T Consensus 196 -~~~~~DilINaTp 208 (289)
T PRK12548 196 -EIASSDILVNATL 208 (289)
T ss_pred -hhccCCEEEEeCC
Confidence 4567898888874
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.87 Score=49.26 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--H-HHHHh-----cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--V-KESRK-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v-~~~~~-----~~~~~v~GD~t~~~~L~~a 601 (791)
++.++|.|. |.+|+.+++.|. ++|++|++++.+++. . +.+.+ .+..++.+|.+|++.+.++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll----------~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLL----------SRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence 457888886 899999999998 899999998764322 1 11221 2467889999999988765
Q ss_pred CCCCCcEEEE
Q 003861 602 GITSPKAVMI 611 (791)
Q Consensus 602 gi~~a~~viv 611 (791)
+.++++++-
T Consensus 76 -l~~~d~v~~ 84 (297)
T PLN02583 76 -LKGCSGLFC 84 (297)
T ss_pred -HcCCCEEEE
Confidence 446777663
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.56 Score=50.71 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .+ ..++.+|.+|++.++++
T Consensus 41 k~vlItGasggIG~~la~~La----------~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFA----------RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45788886 899999999998 789999999999987665532 22 45788999998866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 111 ~~~~~g~id~li~~AG 126 (293)
T PRK05866 111 VEKRIGGVDILINNAG 126 (293)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2347788876653
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.52 Score=49.18 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--g 602 (791)
++++|.| -|.+|+.+++.|. ++|++|++++.+++..+.+.+ .....+.+|.+|++.++++ .
T Consensus 5 ~~vlItG~sg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALA----------KEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 4788888 4999999999998 789999999999887655432 2356789999999987654 1
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
....|++|-+..
T Consensus 75 ~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 75 AVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHcCCCCEEEECCC
Confidence 236787776553
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.61 Score=54.49 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+++.|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+++. +..+..|+.. ++.+ +++|
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~d 71 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCA----------RHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGVD 71 (498)
T ss_pred CEEEEEeecHhHHHHHHHHH----------HCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCCC
Confidence 46999999999999999998 89999999997653 33445555 4455555333 4444 3578
Q ss_pred EEEEEeCCHHHH---HHHHHHHHHhCCCCcEEEEec
Q 003861 608 AVMIMYTDKKRT---IEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 608 ~viv~~~~d~~n---~~~~~~ar~l~p~~~iiara~ 640 (791)
.||+..+=+..| ......||+.+ ++|+-+..
T Consensus 72 ~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~~~e 105 (498)
T PRK02006 72 LVALSPGLSPLEAALAPLVAAARERG--IPVWGEIE 105 (498)
T ss_pred EEEECCCCCCcccccCHHHHHHHHCC--CcEEEHHH
Confidence 777654322233 34556667664 67775543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.6 Score=48.82 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ....+..|.+|++.++++
T Consensus 6 k~vlItGa~~~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAA----------RAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHH
Confidence 46777776 899999999998 8999999999999876555422 356789999999877532
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 76 ~~~~~g~~d~vi~~a 90 (258)
T PRK07890 76 ALERFGRVDALVNNA 90 (258)
T ss_pred HHHHcCCccEEEECC
Confidence 234678776655
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.53 Score=48.85 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.||+|||.|-+|.-+++.|. +.|+ +.++||.|.=.+...-. ..++..+
T Consensus 30 ~~~V~VvGiGGVGSw~veALa----------RsGig~itlID~D~v~vTN~NR-Qi~A~~~------------------- 79 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALA----------RSGIGRITLIDMDDVCVTNTNR-QIHALLG------------------- 79 (263)
T ss_pred hCcEEEEecCchhHHHHHHHH----------HcCCCeEEEEecccccccccch-hhHhhhh-------------------
Confidence 459999999999999999998 6777 68899987543221110 0111111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEcCcH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
..+. ...-......++.||+++|-+... ++++.+.|-.-+-|+||.--.
T Consensus 80 --~iGk-~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD 130 (263)
T COG1179 80 --DIGK-PKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAID 130 (263)
T ss_pred --hccc-HHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchh
Confidence 1122 222334678889999988777544 788888888889999998553
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.61 Score=48.70 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++.++++
T Consensus 5 k~vlItGas~giG~~~a~~l~----------~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAIL----------EAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHH
Confidence 46888886 799999999998 899999999998887654421 1234568999999877653
Q ss_pred -C----CCCCcEEEEEe
Q 003861 602 -G----ITSPKAVMIMY 613 (791)
Q Consensus 602 -g----i~~a~~viv~~ 613 (791)
. ....|.+|-+.
T Consensus 75 ~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 75 SKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHcCCccEEEECC
Confidence 1 12367777554
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.68 Score=47.92 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |..|+.+++.|. +.|++|++++.+++..++.. .. ...++.+|.++++.++++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALA----------KEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHH
Confidence 46788875 689999999998 88999999999987654432 22 355788999999987654
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|.+.+
T Consensus 78 ~~~~~~~id~vi~~ag 93 (239)
T PRK07666 78 LKNELGSIDILINNAG 93 (239)
T ss_pred HHHHcCCccEEEEcCc
Confidence 1246788876653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.66 Score=47.90 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a---- 601 (791)
++++|.|. |.+|+.+++.|. +.|++|++.+.+++..+.+.+ ...+.+.+|.+|++.++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFAL----------KEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred cEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 46788877 779999999998 889999999999987765522 1467889999999877642
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
.....|.++...+
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 1234677776664
|
|
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.24 E-value=5.6 Score=41.44 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=86.5
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChh--hHHHHHhcCCCEEEccCCCH----------
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS--VVKESRKLGFPILYGDASRP---------- 595 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~--~v~~~~~~~~~~v~GD~t~~---------- 595 (791)
+..+.++----|+.||+++-.-+ ..|+|..+| -.|.. +++..+.+|.++++.|++++
T Consensus 71 k~~kgvithSSGNHaqAlalaAk----------~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~lt 140 (323)
T KOG1251|consen 71 KRAKGVITHSSGNHAQALALAAK----------ILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLT 140 (323)
T ss_pred hhcCceEeecCCcHHHHHHHHHH----------hcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHH
Confidence 45667888899999999987765 678875443 23322 34444556666666666542
Q ss_pred -------------------------HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHH
Q 003861 596 -------------------------AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDL 648 (791)
Q Consensus 596 -------------------------~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L 648 (791)
|.|++.| .-|++++..+.----.-+++.+|.+.|+++|++... -++..+-+
T Consensus 141 ee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf 218 (323)
T KOG1251|consen 141 EETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSF 218 (323)
T ss_pred HhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHH
Confidence 5666655 888899998887666678899999999999999766 34445556
Q ss_pred HHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 649 KKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 649 ~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
++-++-++-.|+ -+|.-+..
T Consensus 219 ~~g~I~~l~tp~-----TIADG~r~ 238 (323)
T KOG1251|consen 219 LKGKIVHLDTPK-----TIADGVRT 238 (323)
T ss_pred hcCCeEecCCch-----hhhhhhhh
Confidence 666666643333 45555544
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.61 Score=48.74 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ....+.+|.+|++.++++ .
T Consensus 8 k~ilItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFA----------REGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46777776 799999999998 889999999999887554432 2 356788999999876653 1
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|++|-..
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 13557776554
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.1 Score=48.05 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=50.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCCh-----hhHHHHH-hcCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNP-----SVVKESR-KLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~-----~~v~~~~-~~~~~~v~GD~t~~~~L~~agi 603 (791)
+++|.|. |.+|+.+++.|. +.| ++|+++|... +..+... ..+..++.+|.+|++.++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYIL----------NEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-F 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHH----------HhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-H
Confidence 3677776 999999999997 555 7899888532 2222221 12567889999999988776 3
Q ss_pred C--CCcEEEEEeC
Q 003861 604 T--SPKAVMIMYT 614 (791)
Q Consensus 604 ~--~a~~viv~~~ 614 (791)
+ ++|+||-+..
T Consensus 70 ~~~~~d~vi~~a~ 82 (317)
T TIGR01181 70 TEHQPDAVVHFAA 82 (317)
T ss_pred hhcCCCEEEEccc
Confidence 3 3898877664
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.6 Score=49.20 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=54.0
Q ss_pred CCCEEEeCC-C-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----c---CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-G-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----L---GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~---~~~~v~GD~t~~~~L~~ 600 (791)
.+.++|.|. | .+|+.+++.|. ++|++|+++|.++++.++..+ . ....+.+|.+|++..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRAL----------EEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 457888897 5 59999999998 889999999998876554432 1 25578899999876654
Q ss_pred c------CCCCCcEEEEEeC
Q 003861 601 A------GITSPKAVMIMYT 614 (791)
Q Consensus 601 a------gi~~a~~viv~~~ 614 (791)
+ .....|.+|-+.+
T Consensus 87 ~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 2 1246677766654
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.11 E-value=24 Score=41.33 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+++|+|.|.-|..+++.+++ .....+|-.+|.|++.... .=.|.+|+-... =+++.++-+++ .+
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~--------~~~~~pV~fiDdd~~~~g~-~i~Gv~V~g~~~-i~~~v~~~~~~---~i 181 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRR--------DPEYTPVAFLDDDPDLTGM-KIRGVPVLGRIE-IERVVEELGIQ---LI 181 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHh--------CCCcceEEEECCChhhcCC-EEeceeeechhH-HHHHHHHcCCc---eE
Confidence 46689999999999999999972 2336788999999976431 113666666555 67788877776 56
Q ss_pred EEEeCC
Q 003861 610 MIMYTD 615 (791)
Q Consensus 610 iv~~~~ 615 (791)
+++.++
T Consensus 182 iiAips 187 (588)
T COG1086 182 LIAIPS 187 (588)
T ss_pred EEecCC
Confidence 677666
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.65 Score=49.05 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++++.+++..+.+.+ ....++.+|.+|++.++++
T Consensus 11 ~~vlItGasggIG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFA----------EAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 457777764 69999999998 889999999999887655432 1356778999999987643
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 81 ~~~~~~~id~vi~~A 95 (263)
T PRK07814 81 AVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 124678776543
|
|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=5.7 Score=47.13 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH-----cCCChHHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 003861 122 AVTVIVVPVFKI-----ARASPILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 196 (791)
Q Consensus 122 ~~a~l~~~l~~r-----l~lP~ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la 196 (791)
+++..++.+.-| +++-...|-+++|+++|.+|.- - -..+.++|+.+++|.+|++--++.+...++.-+...
T Consensus 18 f~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~---~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~ 93 (558)
T PRK04972 18 FVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-I---NTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYL 93 (558)
T ss_pred HHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-C---ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHH
Confidence 334444444444 5566677999999999998752 1 223468999999999999998877766555444444
Q ss_pred HHHHHHHH
Q 003861 197 LTQVVLST 204 (791)
Q Consensus 197 ~~~~llt~ 204 (791)
..+++++.
T Consensus 94 ~~~~~~~~ 101 (558)
T PRK04972 94 MLALVMVG 101 (558)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.99 Score=46.66 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=56.1
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
++++|.| .|.+|+.+++.|. ++|+.|++.+.+++..+...+ ....++.+|.+|++.++++
T Consensus 7 ~~vlItGa~g~iG~~la~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLH----------AQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4677777 5899999999998 889999899998887766543 2356788999999988764
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 77 ~~~~id~vi~~ag 89 (245)
T PRK12936 77 DLEGVDILVNNAG 89 (245)
T ss_pred HcCCCCEEEECCC
Confidence 2346787776654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.69 Score=47.97 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH----HHhc--CCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL--GFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~----~~~~--~~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.| .|.+|+.+++.|. ++|+.|++++.+++..+. +++. ...++.+|.+|++.++++ +
T Consensus 7 ~~ilItGasg~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLA----------ADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4677777 6999999999998 789999999999765433 3332 266789999999887764 1
Q ss_pred C----CCCcEEEEEe
Q 003861 603 I----TSPKAVMIMY 613 (791)
Q Consensus 603 i----~~a~~viv~~ 613 (791)
+ .+.|+++-+.
T Consensus 77 ~~~~~~~~d~vi~~a 91 (251)
T PRK12826 77 GVEDFGRLDILVANA 91 (251)
T ss_pred HHHHhCCCCEEEECC
Confidence 1 3678776665
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.63 Score=51.56 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=52.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh----HHHHHh-------cCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRK-------LGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~----v~~~~~-------~~~~~v~GD~t~~~~L~ 599 (791)
++++|.|. |-.|+.+++.|. +.|++|+++|..++. .+...+ ..+..+.||.+|.+.+.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELL----------FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 46899986 999999999998 789999999975432 221111 13567899999998877
Q ss_pred hcCCCCCcEEEEEe
Q 003861 600 SAGITSPKAVMIMY 613 (791)
Q Consensus 600 ~agi~~a~~viv~~ 613 (791)
++ ++++|+||=+.
T Consensus 86 ~~-~~~~d~ViHlA 98 (348)
T PRK15181 86 KA-CKNVDYVLHQA 98 (348)
T ss_pred HH-hhCCCEEEECc
Confidence 54 34688776554
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.71 Score=50.67 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++++|.|. |-+|+.+++.|. +.| .+|+++|.++...+.+.+ .+..++.+|.+|++.++++ ++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~----------~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~ 73 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLL----------ENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LR 73 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-Hh
Confidence 35777775 899999999998 554 689999988765433321 2467889999999998875 35
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
++|.++-+.
T Consensus 74 ~iD~Vih~A 82 (324)
T TIGR03589 74 GVDYVVHAA 82 (324)
T ss_pred cCCEEEECc
Confidence 678877644
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.47 Score=50.54 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=75.1
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHH----hcCC----CEEEccCCCHHHHHh
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESR----KLGF----PILYGDASRPAVLLS 600 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~----~~~~----~~v~GD~t~~~~L~~ 600 (791)
+.|+|. |.+|..++..|. ..| .+++++|.|+++.+... +.-. .-+.. .+|. .
T Consensus 1 I~IIGagG~vG~~ia~~l~----------~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~----~ 65 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA----------DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDP----Y 65 (263)
T ss_pred CEEECCCChHHHHHHHHHH----------hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCch----H
Confidence 478999 999999999987 455 78999999997754432 2111 11121 2231 2
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHHC---CCCeEEcCc
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKKA---GATDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~~---Gad~Vi~p~ 660 (791)
..+++||.||.+.+. | ..|.. ++..+++.+|+..++.- .||.+.- .+++. .-.+|+---
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCchhEEEee
Confidence 235789988885532 1 23443 45667777888665444 4554332 33333 334555444
Q ss_pred HHHHHHHHHHHHhhcCCChHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDD 681 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~ 681 (791)
..-..++-+.+-+.+++++..
T Consensus 145 ~ld~~r~~~~la~~l~v~~~~ 165 (263)
T cd00650 145 TLDPIRFRRILAEKLGVDPDD 165 (263)
T ss_pred cchHHHHHHHHHHHhCCCccc
Confidence 233344444455555666543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=4 Score=44.29 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003861 139 ILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 209 (791)
Q Consensus 139 ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~llt~~~~~~ 209 (791)
.+--++.|+++|++.- +-.+.++.=..+++.+..|..|.++|++++.+.+...+.+++..+.++......
T Consensus 169 lilpILiGmilGNld~-~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhccch-hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4556678888887321 112222222334888899999999999999999999998888888777665443
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.1 Score=46.59 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhc--CCCEEEccCCCHHHHHhc-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~--~~~~v~GD~t~~~~L~~a----- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++. ..+..++. ...++.+|.+|++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLA----------EAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46888887 789999999998 88999999998763 23333332 356889999999877632
Q ss_pred -CCCCCcEEEEEe
Q 003861 602 -GITSPKAVMIMY 613 (791)
Q Consensus 602 -gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 76 ~~~~~~d~li~~a 88 (248)
T TIGR01832 76 EEFGHIDILVNNA 88 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678877654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.78 Score=48.35 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.+++..+.+.+. ...++.+|.+|++.++++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFL----------AEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 46788887 679999999998 8899999999999887776542 356789999998876643
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 223567766554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.47 Score=55.46 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..+++|+|.|.+|+.+++.|. ..|. ++++++.++++.+.+.+. +..+..-+..+ +. ..+.++|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~----------~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~-~al~~aD 331 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLV----------SKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---ML-ACAAEAD 331 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HH-HHHhcCC
Confidence 457999999999999999998 7785 699999999998887653 33332222222 22 2357899
Q ss_pred EEEEEeCCH
Q 003861 608 AVMIMYTDK 616 (791)
Q Consensus 608 ~viv~~~~d 616 (791)
.||.+|+..
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999988764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.68 Score=48.49 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ...+.+|.+|++.++++
T Consensus 8 ~~vlItGasg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELA----------RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 46888887 999999999998 89999999999997654443 233 45678999999987653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 78 ~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 78 VAERFGSVDILVSNAG 93 (262)
T ss_pred HHHHcCCCCEEEECCc
Confidence 1235677766553
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.45 Score=53.34 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~viv 611 (791)
.+.|+|.|+.|..+++.+. +.|++|+++|.+++.... ......+.+|.+|++.+.+. .-.+.|+|+.
T Consensus 1 kililG~g~~~~~l~~aa~----------~~G~~v~~~d~~~~~~~~--~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAM--QVAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchh--hhCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 4789999999999999998 899999999999875322 12234567888998877654 3347887765
Q ss_pred EeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHH-H-HHCCCCe
Q 003861 612 MYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLD-L-KKAGATD 655 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~-L-~~~Gad~ 655 (791)
..++ .+......+.+.+ |+...+..+.|....+. + ++.|+..
T Consensus 69 ~~e~--v~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~ 116 (380)
T TIGR01142 69 EIEA--IATDALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPT 116 (380)
T ss_pred ccCc--cCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCC
Confidence 4443 1222223333332 22223333445554444 3 6788763
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.78 Score=50.44 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=52.3
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH------Hh-cCCCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES------RK-LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~------~~-~~~~~v~GD~t~~~~L~~ag 602 (791)
.+.++|.| .|-+|+.+++.|. +.|++|+++..|++..... .+ ..+.++.||.+|++.++++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLL----------QKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP- 77 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-
Confidence 45688888 6899999999998 7899998777665443221 11 1367889999999887764
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++++|+|+-+.
T Consensus 78 ~~~~d~vih~A 88 (338)
T PLN00198 78 IAGCDLVFHVA 88 (338)
T ss_pred HhcCCEEEEeC
Confidence 34678877554
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.1 Score=47.23 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.++ +..+...+.....+..|.+|++.+++. ..+.|.+
T Consensus 15 k~~lITGas~gIG~ala~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~iDil 83 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFR----------AKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQ-LASLDVL 83 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHh-cCCCCEE
Confidence 46788877 679999999998 8999999999887 332222222235678999999877653 4578887
Q ss_pred EEEeC
Q 003861 610 MIMYT 614 (791)
Q Consensus 610 iv~~~ 614 (791)
|-..+
T Consensus 84 VnnAG 88 (245)
T PRK12367 84 ILNHG 88 (245)
T ss_pred EECCc
Confidence 76653
|
|
| >TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication | Back alignment and domain information |
|---|
Probab=89.71 E-value=17 Score=35.46 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhCCh--HHHHHHHHhHhcCCccchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHh---hhHHHHHHH
Q 003861 353 TVAGTSLLTQKLGFS--DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLALL 427 (791)
Q Consensus 353 ~~~~~~~la~~lGls--~~LgAflaGl~l~~~~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~---~~~~~l~l~ 427 (791)
++...+++.+.+|++ ..+|+++++.+++-....+ .+.=..+..+-+.+.=..+|.+++.+.+.+ .++..+...
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~ 83 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLST 83 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 334455567788886 6888888887776432111 001112234455555678999999887754 344444444
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhhhhhHHHHHHHH
Q 003861 428 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSL 472 (791)
Q Consensus 428 l~~ll~K~l~~~~~~~~~~~~~r~~~~~g~~l~~rG~~~lvla~~ 472 (791)
+..+..-....++..+..+.++.++++. ..|.|.-++.+...
T Consensus 84 ~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 84 VLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHHHHHHHH
Confidence 5555666666677778889999988743 47888777766544
|
The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.53 Score=55.33 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|..... +...+.+... .| + |+++ ++++|.++
T Consensus 138 gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~--~~--~---l~el-l~~aDvV~ 198 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAK----------AFGMKVLAYDPYISP-ERAEQLGVEL--VD--D---LDEL-LARADFIT 198 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEE--cC--C---HHHH-HhhCCEEE
Confidence 356999999999999999998 899999999974221 2223333321 11 1 2222 35678777
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
+..+..+++--+ ......+.|+.
T Consensus 199 l~lPlt~~T~~li~~~~l~~mk~ga 223 (525)
T TIGR01327 199 VHTPLTPETRGLIGAEELAKMKKGV 223 (525)
T ss_pred EccCCChhhccCcCHHHHhcCCCCe
Confidence 777765433322 24444444543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.69 E-value=1 Score=51.13 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-h--cCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-K--LGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~--~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+.++|.|. |.+|+++++.|. ++|.+|++++.+++..+... + .+...+..|.+|++.+++. +++.|
T Consensus 179 K~VLITGASgGIG~aLA~~La----------~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~-l~~ID 247 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELH----------QQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAEL-LEKVD 247 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHH-hCCCC
Confidence 46788877 899999999998 88999999999887654332 1 2345788999999987764 45788
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.+|...
T Consensus 248 iLInnA 253 (406)
T PRK07424 248 ILIINH 253 (406)
T ss_pred EEEECC
Confidence 877643
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.75 Score=47.86 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.| -|.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFA----------AKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 3577777 5899999999998 789999999999987665532 1356788999999876542
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|.+|...
T Consensus 73 ~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 73 AEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 234678777765
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.72 Score=50.28 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a------g 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+...+ .+..++.+|.+|++.++++ .
T Consensus 27 k~vlITGasggIG~~~a~~L~----------~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALA----------QAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 46788887 789999999998 889999999999987765543 2478899999999877653 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 24678777654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.6 Score=49.08 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=59.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC-------------------hhhHHHH----Hh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN-------------------PSVVKES----RK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d-------------------~~~v~~~----~~--~~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. +++++|.| ..+++.+ ++ ..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La----------~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 204 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLA----------AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD 204 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence 558999999999999999998 7787 69999998 2333332 22 22
Q ss_pred CCE--EEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 FPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 ~~~--v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
..+ +....++. .+.+. ++++|.||.++++.+.-..+...+++.+
T Consensus 205 v~v~~~~~~~~~~-~~~~~-~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 205 VQVEAVQERVTSD-NVEAL-LQDVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred CEEEEEeccCChH-HHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 332 23333332 22222 4679999888888776666777777775
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.71 Score=48.57 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=53.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+. .. ...++.+|.+|++.++++
T Consensus 3 ~vlVtGasg~iG~~la~~l~----------~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLA----------RAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred EEEEecCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5788887 899999999998 88999999999987655442 22 355788999999877653
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|++|-+.
T Consensus 73 ~~~~~~id~vi~~a 86 (263)
T PRK06181 73 VARFGGIDILVNNA 86 (263)
T ss_pred HHHcCCCCEEEECC
Confidence 123678777664
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.8 Score=50.65 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH-----HHHh--cCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----ESRK--LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~-----~~~~--~~~~~v~GD~t~~~~L~~agi 603 (791)
++++|.|. |-+|+.+++.|. ++|++|++++.+++... .+.. ..+.++.+|.+|++.++++ +
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~ 79 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILL----------ERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA-I 79 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-H
Confidence 46899998 999999999998 88999999988766422 1111 1356788999999988764 3
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
+.+|+|+-+..
T Consensus 80 ~~~d~Vih~A~ 90 (342)
T PLN02214 80 DGCDGVFHTAS 90 (342)
T ss_pred hcCCEEEEecC
Confidence 46788777653
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.79 Score=48.32 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+++.+. ....+.+|.+|++..+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFV----------AEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 46777776 679999999998 8999999999999887776543 255788999998765442
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-+.
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 124567766654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.96 Score=52.24 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|+.|+.+++.|. + |.+|++.|.+++....+.+.....+.|+-. .+.+ .++|.||
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~----------~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~d~vV 68 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ----------N-KYDVIVYDDLKANRDIFEELYSKNAIAALS-DSRW-----QNLDKIV 68 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh----------C-CCEEEEECCCCCchHHHHhhhcCceeccCC-hhHh-----hCCCEEE
Confidence 457999999999999999996 5 999999996655433332211122244322 2222 4678776
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
...+=+.+| .....+|+.+ ++|+-
T Consensus 69 ~SPgI~~~~-p~~~~a~~~g--i~v~~ 92 (454)
T PRK01368 69 LSPGIPLTH-EIVKIAKNFN--IPITS 92 (454)
T ss_pred ECCCCCCCC-HHHHHHHHCC--Cceec
Confidence 655434444 3456666654 56654
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.81 Score=53.07 Aligned_cols=87 Identities=13% Similarity=-0.019 Sum_probs=57.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++++|+|+|+.|+..++.|. +.|.+|++.|.++. ..+++++ +...+.|+-. ++.+ .++|
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~----------~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~-~~~~-----~~~d 71 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALR----------AHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS-AQRL-----AAFD 71 (468)
T ss_pred CEEEEEccchhhHHHHHHHH----------HcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC-hHHc-----cCCC
Confidence 46999999999999999998 89999999997543 1223444 4445555333 3333 5688
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.||...+=+.+|- ....+|+.+ ++|+.+
T Consensus 72 ~vV~SpgI~~~~p-~~~~a~~~~--i~i~~~ 99 (468)
T PRK04690 72 VVVKSPGISPYRP-EALAAAARG--TPFIGG 99 (468)
T ss_pred EEEECCCCCCCCH-HHHHHHHcC--CcEEEH
Confidence 7766554333333 456667664 667653
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.5 Score=40.27 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=61.2
Q ss_pred HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe-CC--HHHHHH
Q 003861 545 VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY-TD--KKRTIE 621 (791)
Q Consensus 545 ~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~-~~--d~~n~~ 621 (791)
.++..|+ +.|++|..+|.+.+. ++..+.+.-.++|.|.+.. .. .+....
T Consensus 19 ~la~~l~----------~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~ 70 (121)
T PF02310_consen 19 YLAAYLR----------KAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKR 70 (121)
T ss_dssp HHHHHHH----------HTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHH
T ss_pred HHHHHHH----------HCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHH
Confidence 4566676 679999988877643 4444545556888777765 22 245566
Q ss_pred HHHHHHHhCCCCcEEEEecC--hhhHHHHHH-CCCCeEEcCcHH
Q 003861 622 AVQRLRLAFPAIPIYARAQD--MMHLLDLKK-AGATDAILENAE 662 (791)
Q Consensus 622 ~~~~ar~l~p~~~iiara~~--~~~~~~L~~-~Gad~Vi~p~~~ 662 (791)
++..+|+.+|++++++-=.. ....+.+++ .|+|.|+..+-+
T Consensus 71 l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~GegE 114 (121)
T PF02310_consen 71 LARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGEGE 114 (121)
T ss_dssp HHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETTS
T ss_pred HHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCChH
Confidence 77788999999998876554 445555666 899999887643
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=89.46 E-value=2.8 Score=40.22 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=59.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~~agi 603 (791)
++.|+|. |.+|+.++..|.. .....+++++|.+++..+- +++ ...+..... .+.+. +
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~--------~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~-----~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ--------QGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEA-----L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGG-----G
T ss_pred EEEEECCCChHHHHHHHHHHh--------CCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccc-----c
Confidence 6899999 9999999999872 1345579999999876432 222 122333333 44443 4
Q ss_pred CCCcEEEEEeCCH-----------HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 604 TSPKAVMIMYTDK-----------KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 604 ~~a~~viv~~~~d-----------~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
++||.+|++.+.. +.|..+ +..+++.+|+.. +..+.||-+
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~-vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAI-VIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSE-EEE-SSSHH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccE-EEEeCCcHH
Confidence 6899888777541 345443 445566677754 444455544
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.1 Score=54.07 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=52.6
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.| .|.+|+.+++.|. +.|++|+++|.++... ...++.++.+|.+|+. ++++ +.++|.|+-
T Consensus 2 kILVTGAaGFIGs~La~~Ll----------~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIH 66 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLI----------AAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIH 66 (699)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEE
Confidence 478888 6999999999998 8899999999876542 2346789999999986 4443 456888877
Q ss_pred EeC
Q 003861 612 MYT 614 (791)
Q Consensus 612 ~~~ 614 (791)
+..
T Consensus 67 LAa 69 (699)
T PRK12320 67 LAP 69 (699)
T ss_pred cCc
Confidence 764
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.68 Score=51.08 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=50.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHH-------hcCCCEEEccCCCHHHHH
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-------KLGFPILYGDASRPAVLL 599 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~-------~~~~~~v~GD~t~~~~L~ 599 (791)
.++|.|. |-+|+.+++.|. +.|++|+++|.+++ ..+.+. +.+..++.||.+|++.++
T Consensus 2 ~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~ 71 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLL----------EKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLR 71 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHH----------HCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHH
Confidence 5778886 899999999998 78999999998753 222221 134788999999998876
Q ss_pred hcCC-CCCcEEEEEe
Q 003861 600 SAGI-TSPKAVMIMY 613 (791)
Q Consensus 600 ~agi-~~a~~viv~~ 613 (791)
++=- .++|.|+=+.
T Consensus 72 ~~~~~~~~d~ViH~A 86 (343)
T TIGR01472 72 RIIDEIKPTEIYNLA 86 (343)
T ss_pred HHHHhCCCCEEEECC
Confidence 6421 1467665443
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.64 Score=53.08 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|.+|+.+++.|. ..| .++++++.++++.+.+.+ .+...+.. +.+.+ .+.++|.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~----------~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~-----~~l~~-~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLL----------RKGVGKILIANRTYERAEDLAKELGGEAVKF-----EDLEE-YLAEADI 243 (417)
T ss_pred CCEEEEECChHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCeEeeH-----HHHHH-HHhhCCE
Confidence 457999999999999999998 678 789999999998765543 34333321 22322 2458999
Q ss_pred EEEEeCCHH
Q 003861 609 VMIMYTDKK 617 (791)
Q Consensus 609 viv~~~~d~ 617 (791)
|+.+|++.+
T Consensus 244 Vi~aT~s~~ 252 (417)
T TIGR01035 244 VISSTGAPH 252 (417)
T ss_pred EEECCCCCC
Confidence 999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.75 Score=50.64 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=75.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
.+-|+|.|+.|+-++..=. ..|++|.+.|.+++.-. ..-.-..+.++.+|++.++++ ++.+|++ +
T Consensus 3 tvgIlGGGQLgrMm~~aa~----------~lG~~v~vLdp~~~~PA--~~va~~~i~~~~dD~~al~el-a~~~DVi--T 67 (375)
T COG0026 3 TVGILGGGQLGRMMALAAA----------RLGIKVIVLDPDADAPA--AQVADRVIVAAYDDPEALREL-AAKCDVI--T 67 (375)
T ss_pred eEEEEcCcHHHHHHHHHHH----------hcCCEEEEecCCCCCch--hhcccceeecCCCCHHHHHHH-HhhCCEE--E
Confidence 5789999999999999887 89999999999988632 222345777888899999986 4778855 6
Q ss_pred eCCHHHHHHHHHHH---HHhCCCCcEEEEecChhhH-HHHHHCCCCe
Q 003861 613 YTDKKRTIEAVQRL---RLAFPAIPIYARAQDMMHL-LDLKKAGATD 655 (791)
Q Consensus 613 ~~~d~~n~~~~~~a---r~l~p~~~iiara~~~~~~-~~L~~~Gad~ 655 (791)
++-+..+......+ -...|+...+....|+-.+ +.|+++|+..
T Consensus 68 ~EfE~V~~~aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~v 114 (375)
T COG0026 68 YEFENVPAEALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLPV 114 (375)
T ss_pred EeeccCCHHHHHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 55543333333333 3456776666666665544 4578888763
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.81 Score=48.04 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|..+++.|. ++|++|++++.+++..+...+ . ....+.+|.+|++.++++
T Consensus 13 k~ilItGa~g~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALG----------EAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46888875 899999999998 889999999999887655442 2 245789999999888542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-+.+
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235787776654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.98 Score=50.23 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=55.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS------------ 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~------------ 600 (791)
++.|+|.|-+|...+-.|. +.|++|+.+|.|+++++.+.+...+.+ ++-=++.|++
T Consensus 2 kI~viGtGYVGLv~g~~lA----------~~GHeVv~vDid~~KV~~ln~g~~PI~--EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 2 KITVIGTGYVGLVTGACLA----------ELGHEVVCVDIDESKVELLNKGISPIY--EPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred ceEEECCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHhCCCCCCc--CccHHHHHHhccccCcEEEEcC
Confidence 4789999999999999998 899999999999999999886554444 2333444442
Q ss_pred --cCCCCCcEEEEEeCC
Q 003861 601 --AGITSPKAVMIMYTD 615 (791)
Q Consensus 601 --agi~~a~~viv~~~~ 615 (791)
..++++|.++++++.
T Consensus 70 ~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 YEEAVKDADVVFIAVGT 86 (414)
T ss_pred HHHHHhcCCEEEEEcCC
Confidence 246689988888765
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.78 Score=48.65 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a 601 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++-++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLV----------AAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHH
Confidence 357899986 899999999998 889999999999877554332 1356778999999866543
Q ss_pred ------CCCCCcEEEEEeC
Q 003861 602 ------GITSPKAVMIMYT 614 (791)
Q Consensus 602 ------gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 77 ~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1236787776543
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.1 Score=50.69 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCC----------hhhHHHHHhcCCCEE--Ec--cCCCH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLN----------PSVVKESRKLGFPIL--YG--DASRP 595 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d----------~~~v~~~~~~~~~~v--~G--D~t~~ 595 (791)
..+++|.|+|.+|+.+++.|. +.|..|+ |-|.+ .+.+.+..+..-.+. .+ ..+++
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~----------e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~ 275 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIH----------EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPD 275 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCc
Confidence 347999999999999999998 8899999 66876 655544332211110 01 12334
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.|. .++|.++=+.-....| ..++.++ ++++|+..- +++..+.|++-|+-. .|.
T Consensus 276 e~l~----~~~DvliP~Al~~~I~---~~na~~i--~ak~I~egAN~p~t~ea~~~L~~rGI~~--~PD 333 (410)
T PLN02477 276 DILV----EPCDVLIPAALGGVIN---KENAADV--KAKFIVEAANHPTDPEADEILRKKGVVV--LPD 333 (410)
T ss_pred ccee----ccccEEeeccccccCC---HhHHHHc--CCcEEEeCCCCCCCHHHHHHHHHCCcEE--ECh
Confidence 4443 3889776665443333 2344444 478888654 467888999998754 466
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.33 Score=44.65 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc--------CCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD--------ASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD--------~t~~~~L~~agi 603 (791)
++++|+|-|..+..+++.++ +.|++++++..|++....-.+...+++.-. .+-+++++-+.-
T Consensus 3 kkvLIanrGeia~r~~ra~r----------~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALR----------ELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHH----------HTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------HhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhh
Confidence 57999999999999999999 899999999999998654443333333322 233445555555
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
+.++++.-..+--.+|...+....+.
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~~ 98 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACEDA 98 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHHT
T ss_pred hcCcccccccchhHHHHHHHHHHHHC
Confidence 56676655555556666666555543
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.2 Score=46.91 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. +.|.+|++++.+++..+++.+ .....+..|.+|++-++++
T Consensus 8 k~vlItG~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFA----------AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46777787 689999999998 789999999999887665432 1256788999998876553
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 78 ~~g~id~lv~~ag 90 (259)
T PRK06125 78 EAGDIDILVNNAG 90 (259)
T ss_pred HhCCCCEEEECCC
Confidence 2356787776543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=3.1 Score=42.14 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=56.2
Q ss_pred CCCCEEEeCCCh--hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC----CCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG----FPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~----~~~v~GD~t~~~~L~ 599 (791)
..+.++-+|+|. ++..+++.+ ..+.+|+.+|.+++.++.+++ .+ ..++.+|..+ .+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~-----------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~--~l~ 106 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV-----------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE--ILF 106 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh-----------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh--hHh
Confidence 345788888865 444554544 345689999999998876542 23 4567788753 343
Q ss_pred hcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 600 SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+. -+.+|.+++..+.++.--.+-...+.+.|+-.++...
T Consensus 107 ~~-~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 107 TI-NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred hc-CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 1478988775433222122233345566765655433
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.84 Score=47.41 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++.+ ....++.+|.+|++.++++
T Consensus 4 ~~ilItGas~~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFA----------EEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45777774 889999999998 889999999999887665432 2367789999999887764
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|.+.+
T Consensus 74 ~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 74 AEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246787777764
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.72 Score=50.75 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=54.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+-|+|+|++|+.+++.++ ..|.+|++.|. .++... +..-+++-.+=+++| +++|.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~----------afgm~v~~~d~~~~~~~~-----~~~~~~~~~~Ld~lL-----~~sDiv 201 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLK----------AFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDELL-----AEADIL 201 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCCchhhh-----ccccceecccHHHHH-----hhCCEE
Confidence 457999999999999999998 89999999998 333322 222333333344555 456766
Q ss_pred EEEeCC--HHHHHHHHHHHHHhCCCC
Q 003861 610 MIMYTD--KKRTIEAVQRLRLAFPAI 633 (791)
Q Consensus 610 iv~~~~--d~~n~~~~~~ar~l~p~~ 633 (791)
++.++- +..++.-......+-|++
T Consensus 202 ~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 202 TLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred EEcCCCCcchhcccCHHHHhhCCCCe
Confidence 666544 345555566666665554
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.05 E-value=6.8 Score=42.17 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=58.4
Q ss_pred CCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++. ++|-|. +-.|+.+|.++. +.|..+++.|.|++-.++-.+ ..++.| +|++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa----------~rg~~~vl~Din~~~~~etv~--------------~~~~~g--~~~~ 90 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFA----------KRGAKLVLWDINKQGNEETVK--------------EIRKIG--EAKA 90 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHH----------HhCCeEEEEeccccchHHHHH--------------HHHhcC--ceeE
Confidence 444 555565 469999999998 899999999999886553322 122223 7777
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
-.+-.+++++=...+...|+...++.|++
T Consensus 91 y~cdis~~eei~~~a~~Vk~e~G~V~ILV 119 (300)
T KOG1201|consen 91 YTCDISDREEIYRLAKKVKKEVGDVDILV 119 (300)
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 77778887777777888888877777666
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.1 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHH--HHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAV--LLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~--L~~agi~~a~ 607 (791)
.++++|.|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. |..+++. +.+.. ..+|
T Consensus 170 g~~VlV~G~G~vG~~aiqlak----------~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~-g~~D 237 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVK----------TLGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDDLDHYKAEK-GYFD 237 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCcccHHHHhccC-CCCC
Confidence 357999999999999999887 7887 588999999999999998876543 3333222 11111 2489
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++...
T Consensus 238 ~vid~~G~~~ 247 (343)
T PRK09880 238 VSFEVSGHPS 247 (343)
T ss_pred EEEECCCCHH
Confidence 8888887643
|
|
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.00 E-value=18 Score=41.42 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhHhcCCc---cchhHHHHhhhchHhHHHHHHHHHHcccCChHHHHhhhHHHHHHHHHH
Q 003861 354 VAGTSLLTQKLGFSDTLGAFLAGAILAET---NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 430 (791)
Q Consensus 354 ~~~~~~la~~lGls~~LgAflaGl~l~~~---~~~~~i~~~l~~~~~~f~~lFFv~vG~~l~l~~l~~~~~~~l~l~l~~ 430 (791)
......+.+.+..+...-..+.|++.+.. .......-.-+.+..++.|.--..-|.++|...+.++|..+..+....
T Consensus 18 ~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~ 97 (429)
T COG0025 18 GLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPL 97 (429)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHH
Confidence 33444455555555555555555444421 111111111112236777777778899999999988888877777767
Q ss_pred HHHHHHHHHHhhhhc--CCCHHHHHHHHHHHhhhhhHHHH
Q 003861 431 IIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFV 468 (791)
Q Consensus 431 ll~K~l~~~~~~~~~--~~~~r~~~~~g~~l~~rG~~~lv 468 (791)
++...+++....++. ++++..++..|..++|-.-+++.
T Consensus 98 v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 98 VLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 766666666555554 78888999999888777655443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.87 Score=47.74 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++-++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLI----------AEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 45788876 899999999998 789999999998876555432 2356789999998766432
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 81 ~~g~id~li~~a 92 (255)
T PRK05717 81 QFGRLDALVCNA 92 (255)
T ss_pred HhCCCCEEEECC
Confidence 123577776544
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.9 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.035 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc-----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a----- 601 (791)
+++|.|. +.+|+.+++.|. ++|++|++++.+++..++..+ .....+.+|.+|++..+++
T Consensus 2 ~vlItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELL----------KKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 4677776 779999999998 889999999999887655432 2466789999998876643
Q ss_pred -CCCCCcEEEEEe
Q 003861 602 -GITSPKAVMIMY 613 (791)
Q Consensus 602 -gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 72 ~~~g~id~li~na 84 (259)
T PRK08340 72 ELLGGIDALVWNA 84 (259)
T ss_pred HhcCCCCEEEECC
Confidence 234677776544
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=88.95 E-value=1 Score=42.23 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=55.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChh-hH----HHHH---hcCCCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VV----KESR---KLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~-~v----~~~~---~~~~~~v~GD~t~~~~L~~ag 602 (791)
+|+|+|+ ||+|+.+++.+.+ +.+.+ +-++|.+++ .+ .++. ..+.++. +| ++++-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~---------~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~---l~~~~ 65 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILE---------SPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DD---LEELL 65 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S----HHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHh---------cCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hh---HHHhc
Confidence 5899999 9999999999982 57887 456677762 11 1111 1222222 22 22221
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHCCCC
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKAGAT 654 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~~Gad 654 (791)
+++|++|=.+ ..+........+.+.+ +++|.-. -+++..+.++++...
T Consensus 66 -~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 66 -EEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp -TH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred -ccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHHhcc
Confidence 2288665555 5555555566666653 4544433 345666777775433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.83 Score=48.61 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|+++|.+++..++..+ .....+.+|.+|++.++++=
T Consensus 19 k~~lItGas~gIG~~la~~l~----------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFH----------KHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 35777775 789999999998 899999999998876554432 23668899999998876531
Q ss_pred ---CCCCcEEEEEe
Q 003861 603 ---ITSPKAVMIMY 613 (791)
Q Consensus 603 ---i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 23577776544
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.2 Score=46.49 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=53.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----HhcC--CCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKLG--FPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~~~--~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|.+|++++.+++..++. ++.+ ...+.+|.+|++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLA----------KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5778875 899999999998 8899999999988765443 2223 56788999999977653
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-+.
T Consensus 72 ~~~~~~id~vi~~a 85 (254)
T TIGR02415 72 AEKFGGFDVMVNNA 85 (254)
T ss_pred HHHcCCCCEEEECC
Confidence 223567776655
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.7 Score=55.90 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=55.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---------------------HHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---------------------v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. +.|++|+++|.+++. ++.+++.|.++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La----------~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~ 261 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLL----------RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFR 261 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3568999999999999999998 889999999987542 455667787777
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+.....+ .+++.. .++|+++++++..
T Consensus 262 ~~~~v~~dv~~~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 262 FNTVFGRDITLEELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred eCCcccCccCHHHHH-hhcCEEEEEcCCC
Confidence 66542111 122211 3589999999863
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.84 Score=47.52 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.| .|.+|+.+++.|. ++|++|++++.+++..+.+.+ ..+..+.+|.+|++.++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALA----------AAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 477777 5899999999998 889999999999887665543 2366789999999844321
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 73 ~~~~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAEFGGLDILVNNA 86 (255)
T ss_pred HHhcCCCCEEEECC
Confidence 134567666544
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.63 Score=51.46 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=50.8
Q ss_pred CCEEEeCCChhHHHHHHHh-hhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLL-SAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L-~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++.|+|+|++|+.+++.| . ..|.+|.+.|.+++... . ... ... +.++++ ++++|.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~----------~~g~~V~~~d~~~~~~~--~-~~~-----~~~--~~l~el-l~~aDvIv 205 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAK----------GYGSDVVAYDPFPNAKA--A-TYV-----DYK--DTIEEA-VEGADIVT 205 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHh----------cCCCEEEEECCCccHhH--H-hhc-----ccc--CCHHHH-HHhCCEEE
Confidence 4699999999999999999 5 67899999998765421 1 111 111 123332 46789999
Q ss_pred EEeCCHHHHHHH--HHHHHHhCCCC
Q 003861 611 IMYTDKKRTIEA--VQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~n~~~--~~~ar~l~p~~ 633 (791)
++++....+-.+ ....+.+.|+.
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~ga 230 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKGA 230 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCCc
Confidence 888775433322 22344445553
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.92 Score=47.09 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cC--CCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~--~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..++..+ .+ ...+++|.+|++..+++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFL----------AEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46888886 899999999998 889999999999887665543 22 45678999998755432
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~id~vi~~a 88 (249)
T PRK06500 77 AFGRLDAVFINA 88 (249)
T ss_pred HhCCCCEEEECC
Confidence 124677776554
|
|
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.84 E-value=6.5 Score=43.77 Aligned_cols=117 Identities=23% Similarity=0.220 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHH--HcCCChHHHHHHHHHhhcc----cCCcC-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHH
Q 003861 121 LAVTVIVVPVFK--IARASPILGFFFAGIVLNQ----LGIIR-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAF 193 (791)
Q Consensus 121 L~~a~l~~~l~~--rl~lP~ivg~ilaGillGp----~gli~-~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~ 193 (791)
+..+..+..+.+ .+.+|..+..+++|+++.. .+..+ ..+.++.+++.++.+++=.+=+.+.+-+|-+.+-+.+
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~ 310 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLL 310 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 334444444444 3679999999999999987 23222 5578899999999988888878999988888888888
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHH----HHHHhhhccHHHH
Q 003861 194 GMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVV----IGAALSLSSSAFV 257 (791)
Q Consensus 194 ~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~all----lga~ls~TS~avv 257 (791)
.+-.+|+++..+...++ .+-.+| -++.++.+ +|.-+..|-+++.
T Consensus 311 viL~vQ~i~m~lfa~fv------------tfr~mG--------~~YdAaV~~~G~~G~gLGATPtAia 358 (404)
T COG0786 311 VILAVQTIVMALFAIFV------------TFRLMG--------KNYDAAVLAAGHCGFGLGATPTAIA 358 (404)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHhC--------cchhHHHHhcccccCccCCcHHHHH
Confidence 88888888766554444 234556 46666666 4455555554444
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.82 Score=48.63 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+ .+ ...+.+|.+|++.++++
T Consensus 11 k~vlVtGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELA----------RAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 45777776 889999999998 899999999999876554432 22 56789999999866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 81 ~~~~~g~id~li~~ag 96 (278)
T PRK08277 81 ILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1346787776544
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.79 E-value=3.5 Score=45.05 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=79.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhH----HHHHhc----C-CC-EEEccCCCHHHHHh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVV----KESRKL----G-FP-ILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v----~~~~~~----~-~~-~v~GD~t~~~~L~~ 600 (791)
.+.|+|.|.+|..+|..|. ..+. +++++|.++++. .++.+. + .. .+++ .|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~----------~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y~---- 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYAL----------ALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDYD---- 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCHH----
Confidence 4789999999999999886 3333 799999998753 223321 1 12 2232 3333
Q ss_pred cCCCCCcEEEEEeCC------H-------HHHHHH----HHHHHHhCCCCcEEEEecChhhHHH--H-HHCC--CCeEEc
Q 003861 601 AGITSPKAVMIMYTD------K-------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLLD--L-KKAG--ATDAIL 658 (791)
Q Consensus 601 agi~~a~~viv~~~~------d-------~~n~~~----~~~ar~l~p~~~iiara~~~~~~~~--L-~~~G--ad~Vi~ 658 (791)
..++||.+|++.+. + ..|..+ +..+++.+|+. ++..+.||-+.-. . +..| -.+||-
T Consensus 65 -~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~-i~ivvsNPvDv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 65 -DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEA-VIILITNPLDIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred -HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEecCcHHHHHHHHHHHhCcChhheec
Confidence 45789988887763 1 345543 45566667775 4555555544322 2 2233 334555
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
. ..+-..|+-..+-+.+++++..++-
T Consensus 143 ~gt~LDs~R~~~~la~~l~v~~~~V~~ 169 (307)
T cd05290 143 TGTMLDTARLRRIVADKYGVDPKNVTG 169 (307)
T ss_pred ccchHHHHHHHHHHHHHhCCCcccEEE
Confidence 4 3444566666666777777765443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.83 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=52.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh------cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~------~~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |.+|+.+++.|. +.|++|++.+.+++..+++.+ .....+.+|.+|++.++++
T Consensus 3 ~~lItG~s~giG~~ia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFA----------EEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred EEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4677776 569999999998 889999999999887655432 2356788999999877652
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 73 ~~~~~~id~lI~~a 86 (252)
T PRK07677 73 DEKFGRIDALINNA 86 (252)
T ss_pred HHHhCCccEEEECC
Confidence 123567777554
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=88.71 E-value=3.5 Score=41.98 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|..|.++++.|. ..|.. ++++|.|.=... +.+.+.++. + +..|
T Consensus 21 ~s~VlIiG~gglG~evak~La----------~~GVg~i~lvD~d~ve~s---nL~rqfl~~----~---~diG------- 73 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLV----------LSGIGSLTILDDRTVTEE---DLGAQFLIP----A---EDLG------- 73 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHH----------HcCCCEEEEEECCcccHh---hCCCCcccc----H---HHcC-------
Confidence 568999999999999999998 78885 889998753222 122222221 0 1111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--~~~~~L~~~Gad~Vi~p 659 (791)
......++..++++||++++-+...+. ...+.++ +.|-||..
T Consensus 74 ------~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~--~~dvVi~~ 117 (197)
T cd01492 74 ------QNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFS--QFDVVVAT 117 (197)
T ss_pred ------chHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHh--CCCEEEEC
Confidence 123345678899999998876654432 2223333 57888764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.6 Score=44.90 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHH-hcCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR-KLGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~-~~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+. +++..+++. +.+...+.+|.+|++.++++ ...+.
T Consensus 7 k~vlItGasggIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFV----------TDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 46888886 899999999998 88999888754 556665553 34677888999998866543 23456
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.+|-..
T Consensus 77 d~li~~a 83 (237)
T PRK12742 77 DILVVNA 83 (237)
T ss_pred cEEEECC
Confidence 7776554
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.75 Score=53.30 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. ..|++|+++|.++. ..+.+++.|..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~----------~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA----------RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998 78999999998752 3455677787765
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+-.-..+ .+++. ..++|+++++++..
T Consensus 210 ~~~~v~~~~~~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 210 LNCEVGRDISLDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred CCCEeCCccCHHHH-HhcCCEEEEEeCCC
Confidence 44211111 12221 13699999999874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.61 Score=51.83 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=65.8
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEe
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 613 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~ 613 (791)
+.|+|.|+.|+.+++..+ +.|++|+++|.+++.... +..-..+.+|.+|++.+++.- +.+|.+ +.
T Consensus 2 igiiG~gql~~~l~~aa~----------~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t~ 66 (352)
T TIGR01161 2 VGILGGGQLGRMLALAAR----------PLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--TF 66 (352)
T ss_pred EEEECCCHHHHHHHHHHH----------HcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--Ee
Confidence 679999999999999998 899999999998864321 222335578999999887753 456754 33
Q ss_pred CCHHHHHHHHHHHHHh----CCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 614 TDKKRTIEAVQRLRLA----FPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 614 ~~d~~n~~~~~~ar~l----~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
+.+..+......+.+. .|+...+..++|... .+.|+++|+..
T Consensus 67 e~e~i~~~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~ 113 (352)
T TIGR01161 67 EFEHVDVEALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPV 113 (352)
T ss_pred CcCcCCHHHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 3322222223333333 233233334444333 34467777763
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.9 Score=47.89 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--------CcEEEEcC-----ChhhHHHHHhcCCCEEEc-cCCCH---
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--------WPFVAFDL-----NPSVVKESRKLGFPILYG-DASRP--- 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--------~~vvvID~-----d~~~v~~~~~~~~~~v~G-D~t~~--- 595 (791)
++.|+|.|.+|.++|..|. +.| ++|.+... +++..+...+...+.-+- +..-+
T Consensus 1 kI~VIGaG~wGtALA~~la----------~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA----------ENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCe
Confidence 4789999999999999998 567 89999987 556666655422222110 11000
Q ss_pred ---HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 596 ---AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 596 ---~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
.-+++ -+++||.+++++++...- .++..++. +.++..++.-+
T Consensus 71 ~at~dl~e-al~~ADiIIlAVPs~~i~-~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 71 VAVPDLVE-AAKGADILVFVIPHQFLE-GICKQLKGHVKPNARAISCI 116 (342)
T ss_pred EEECCHHH-HHhcCCEEEEECChHHHH-HHHHHHHhhcCCCCEEEEEe
Confidence 01221 246889999999986432 22344443 33444454433
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.98 Score=47.78 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
.++++|.|. |.+|..+++.|. +.|+.|++++.+++..+... +. ...++.+|.+|++.++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFA----------RAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 347778877 899999999998 88999999999887755432 22 245678999998877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 79 ~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 79 QIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124568776543
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.9 Score=45.40 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHH----HHhc----CCC-EEEccCCCHHHHHhcCC
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRKL----GFP-ILYGDASRPAVLLSAGI 603 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~----~~~~----~~~-~v~GD~t~~~~L~~agi 603 (791)
+.|+|.|.+|..++..+. ..|. +++++|.|++..+. +.+. +.. -+.. .+| .+ .+
T Consensus 1 I~IIGaG~vG~~ia~~la----------~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~-t~d---~~--~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA----------LKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG-TND---YE--DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE-cCC---HH--Hh
Confidence 468999999999999987 5555 99999999886421 1111 111 1221 122 22 26
Q ss_pred CCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CCCC--eEEcCc-HH
Q 003861 604 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGAT--DAILEN-AE 662 (791)
Q Consensus 604 ~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Gad--~Vi~p~-~~ 662 (791)
++||.+|++.+. | .+|.. ++..+++..|+..++ .+.|+.+. ..+.+ .|-+ +|+--- ..
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iI-v~sNP~di~t~~~~~~s~~~~~rviGlgt~l 143 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVI-VVTNPLDVMTYVAYKASGFPRNRVIGMAGVL 143 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE-EecCcHHHHHHHHHHHhCCCHHHEEEecchH
Confidence 899999887641 1 23444 345556667764433 34454433 23333 3433 455433 23
Q ss_pred HHHHHHHHHHhhcCCChHHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~~ 683 (791)
-..|+-..+-+.+++++..++
T Consensus 144 ds~r~~~~la~~l~v~~~~v~ 164 (300)
T cd01339 144 DSARFRYFIAEELGVSVKDVQ 164 (300)
T ss_pred HHHHHHHHHHHHhCCCccceE
Confidence 334555555566677665543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.9 Score=46.39 Aligned_cols=100 Identities=19% Similarity=0.167 Sum_probs=72.4
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
-.+.+|+|+|.|-.|..-|+... ..|-+|+++|.|.++.+.+.+. +.. +.--.++++.+++ .+.++|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~----------glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee-~v~~aD 233 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI----------GLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEE-AVKKAD 233 (371)
T ss_pred CCCccEEEECCccccchHHHHHh----------ccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHH-Hhhhcc
Confidence 35678999999999999999987 8899999999999999888763 332 3333466667764 578899
Q ss_pred EEEEEe---CCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 608 AVMIMY---TDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 608 ~viv~~---~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
.+|-+. +.+.-.+..-...|++.|..-||=.+-
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 776543 334445555566888888755554443
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.92 Score=50.06 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC-
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag- 602 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.|++..+++. +.+ ..++..|.+|++..+++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la----------~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFA----------RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 347888888 799999999998 89999999999998865543 333 446789999998877641
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
....|.+|-..+
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 246787766654
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=1 Score=53.08 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|..+.. +...+.+.... +-++. ++++|.++
T Consensus 140 gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~l~el-----l~~aDiV~ 199 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAK----------AFGMKVIAYDPYISP-ERAAQLGVELV----SLDEL-----LARADFIT 199 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEE----cHHHH-----HhhCCEEE
Confidence 456899999999999999998 899999999975432 22233343322 22233 34667777
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++.+..+
T Consensus 200 l~lP~t~ 206 (526)
T PRK13581 200 LHTPLTP 206 (526)
T ss_pred EccCCCh
Confidence 7776643
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.96 Score=49.92 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ..++.+|.+|++.++++
T Consensus 9 k~vlITGas~gIG~~la~~la----------~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFA----------RRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46777776 899999999998 89999999999988765543 223 45678999999988764
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 79 ~~~~~g~iD~lInnA 93 (334)
T PRK07109 79 AEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHCCCCCEEEECC
Confidence 123567766544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.28 E-value=2 Score=47.52 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC---ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~---d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|.|.|.+|...++.++ ..|.+|++++. ++++.+.+++.|...+ |..+++.-+...-..+|
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak----------~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d 240 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLR----------LRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFD 240 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCC
Confidence 457999999999999999887 78889999987 6888888888887654 44333221111224689
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++.+.
T Consensus 241 ~vid~~g~~~ 250 (355)
T cd08230 241 LIIEATGVPP 250 (355)
T ss_pred EEEECcCCHH
Confidence 9988888653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.1 Score=47.18 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=51.8
Q ss_pred CCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---hcCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---KLGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~~~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++.+.|++..+.+. ......+..|.+|++..+++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIK----------DQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHH----------HCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHH
Confidence 468888885 79999999998 89999999988754333332 23456788999998876542
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 78 ~~~~g~iD~lv~nA 91 (252)
T PRK06079 78 KERVGKIDGIVHAI 91 (252)
T ss_pred HHHhCCCCEEEEcc
Confidence 234678776543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.2 Score=50.17 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh--------------cCCCEEEccCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK--------------LGFPILYGDASR 594 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~--------------~~~~~v~GD~t~ 594 (791)
..++|+++|+|. |....+.++ ..+ .+++++|.|++.++.+++ ...+++.+|+.+
T Consensus 297 ~~~rVL~IG~G~-G~~~~~ll~----------~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 297 RPRRVLVLGGGD-GLALREVLK----------YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCeEEEEcCCc-cHHHHHHHh----------CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 345799999984 443333343 333 689999999999988876 235678888863
Q ss_pred HHHHHhcCCCCCcEEEEEeCC
Q 003861 595 PAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 595 ~~~L~~agi~~a~~viv~~~~ 615 (791)
.+++.. ++.|.|++..++
T Consensus 366 --~l~~~~-~~fDvIi~D~~~ 383 (521)
T PRK03612 366 --WLRKLA-EKFDVIIVDLPD 383 (521)
T ss_pred --HHHhCC-CCCCEEEEeCCC
Confidence 344432 689998887655
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=88.26 E-value=8.2 Score=41.53 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHH---HHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVK---ESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~---~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
..-+|+|.|+ |++|+++++.+. +.+.+.+. +|..++-.+ ++...+.+ +++....+++|.+.--+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~----------~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~-~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAV----------SAGLQLVPVSFTGPAGVGVTVEVCGVEVR-LVGPSEREAVLSSVKAE 78 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHh----------cCCCEEEEEeccccccccccceeccceee-eecCccHHHHHHHhhcc
Confidence 3458999998 999999999997 56676554 554442211 11111111 22234445667666556
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHH-CCCCeEEcCcHHHHHHHHHHHHh
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKK-AGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~-~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
.++.|++-.+..+.....+..+.+.+ +++|+-.. +++..+.+.+ .++--++.|+.-.|..+..++.+
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~~g--~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~ 148 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCKNG--LPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAME 148 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 79988888888777667677777764 45444322 3344444444 47788999999888887777765
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.97 Score=48.11 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a-- 601 (791)
++.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ....+.+|.+|++.++++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELA----------AAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 357888885 899999999998 889999999988776544332 2 245678999999988642
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
.....|++|-..+
T Consensus 80 ~~~~~~~~id~vi~~Ag 96 (274)
T PRK07775 80 QAEEALGEIEVLVSGAG 96 (274)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1245677765553
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.24 E-value=3.3 Score=44.66 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|..+++.|. ..|. .++++|.|.=....+. -++.+ ...| +
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA----------~aGVG~i~lvD~D~Ve~SNLn---RQ~l~--------------~~~d-i 78 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLA----------RLGIGKFTIADFDVFELRNFN---RQAGA--------------MMST-L 78 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHH----------HhCCCeEEEEeCCCcchhccc---cccCc--------------ChhH-C
Confidence 568999999999999999998 6777 5888887754332221 11111 1111 0
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+. ...-.+...++++||+++|.+... ++++...+- .+.|-|+.-.
T Consensus 79 ----G~-~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~ 125 (287)
T PRK08223 79 ----GR-PKAEVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGL 125 (287)
T ss_pred ----CC-cHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECC
Confidence 11 233345678899999999777543 344444432 2688888654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.1 Score=46.23 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.|. |..|+.+++.|. ++|++|++++.+++..+...+ .+ ...+.+|.+|++.++++ +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLA----------ADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46888876 899999999998 789999999999887554432 22 55677999999877553 2
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
....|+++-+.
T Consensus 76 ~~~~~~~id~vi~~a 90 (246)
T PRK05653 76 AVEAFGALDILVNNA 90 (246)
T ss_pred HHHHhCCCCEEEECC
Confidence 23568777765
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.3 Score=46.14 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=58.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhh-------------------H----HHHHhc--C
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV-------------------V----KESRKL--G 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~-------------------v----~~~~~~--~ 584 (791)
+.+|+|+|+|..|..+++.|. ..|. .++++|.|.=. + +++++. .
T Consensus 21 ~~~VlivG~GglGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLA----------AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD 90 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence 568999999999999999998 6777 68888776421 1 112221 1
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
...+..+.+.+ .+.+ -++++|.||.++++.+....+...+++.+
T Consensus 91 ~~i~~~~~~i~~~-~~~~-~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ 136 (228)
T cd00757 91 VEIEAYNERLDAE-NAEE-LIAGYDLVLDCTDNFATRYLINDACVKLG 136 (228)
T ss_pred CEEEEecceeCHH-HHHH-HHhCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 22333333322 2222 24679999999988877777778888875
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=4.4 Score=44.55 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+++.|+|. |++|..++..|.. .....+++++|.+... +.++++........+.+|+..+ ...++++|+
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~--------~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~-~~~l~gaDv 79 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQ--------NPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELW-EKALRGADL 79 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhc--------CCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCch-HHHhCCCCE
Confidence 48999999 9999999998861 1234689999984322 2233332223344555554332 234678999
Q ss_pred EEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHHHHH------H---CCCCeEEcCcHHHH
Q 003861 609 VMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLDLK------K---AGATDAILENAETS 664 (791)
Q Consensus 609 viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~~~~L~------~---~Gad~Vi~p~~~~~ 664 (791)
||++.+.. ..|.. ++..+++.+|+ .++.-+.++-+.-... + ...++|+--..+-+
T Consensus 80 VVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs 158 (321)
T PTZ00325 80 VLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDV 158 (321)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHH
Confidence 98887651 13433 34567777887 4555555544432211 2 23455555544555
Q ss_pred HHHHHHHHhhcCCChHHHH
Q 003861 665 LQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 665 ~~la~~~l~~l~~~~~~~~ 683 (791)
.|+-..+-+.+++++..++
T Consensus 159 ~R~r~~la~~l~v~~~~V~ 177 (321)
T PTZ00325 159 VRARKFVAEALGMNPYDVN 177 (321)
T ss_pred HHHHHHHHHHhCcChhheE
Confidence 5666666666666665443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=1 Score=49.18 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+++.|+ ..|.+|++.|.+... .+....+ .+ ++++ ++++|.|+
T Consensus 122 gktvgIiG~G~IG~~vA~~l~----------afG~~V~~~~r~~~~------~~~~~~~---~~---l~el-l~~aDiv~ 178 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAK----------AFGMNIYAYTRSYVN------DGISSIY---ME---PEDI-MKKSDFVL 178 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcc------cCccccc---CC---HHHH-HhhCCEEE
Confidence 457899999999999999997 789999999986431 1221111 12 2221 36788888
Q ss_pred EEeCCHHHHH--HHHHHHHHhCCCCcEE
Q 003861 611 IMYTDKKRTI--EAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d~~n~--~~~~~ar~l~p~~~ii 636 (791)
+..+..+++- .-......+.|+..+|
T Consensus 179 ~~lp~t~~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 179 ISLPLTDETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred ECCCCCchhhcCcCHHHHhcCCCCeEEE
Confidence 8887754433 3244455555554433
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=88.14 E-value=2.5 Score=44.83 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=68.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEc----------CChhhHHHH---Hh-cCC--CEE---E-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFD----------LNPSVVKES---RK-LGF--PIL---Y- 589 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID----------~d~~~v~~~---~~-~~~--~~v---~- 589 (791)
..+++|-|||.+|+.+++.|. +.|..|+ +-| .|.+.++++ .+ .+. .-. +
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~----------e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~ 107 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLL----------ELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG 107 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC
Confidence 348999999999999999998 8899999 445 233333222 11 111 000 0
Q ss_pred -cc-CCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeEEcCc
Q 003861 590 -GD-ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 590 -GD-~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.. .++++.|. .+||.++=+.-.+..|-..+..+++ +++++|+..- +++..+.|++-|+-. .|.
T Consensus 108 ~a~~~~~~~~~~----~~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L~~rGI~v--vPD 176 (254)
T cd05313 108 TAKYFEGKKPWE----VPCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVFRQAGVLF--APG 176 (254)
T ss_pred CCEEeCCcchhc----CCCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHHHHCCcEE--ECc
Confidence 01 13334442 3699877776655555554444443 3478888654 467888899998754 476
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.1 Score=47.05 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.|. |.+|+.+++.|. +.|++++++|.+++..+...+ .....+.+|.+|++.++++-
T Consensus 3 k~ilItG~~~~IG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLA----------EEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 35677776 688999999998 789999999998876544322 13668899999988776541
Q ss_pred ------CCCCcEEEEEeC
Q 003861 603 ------ITSPKAVMIMYT 614 (791)
Q Consensus 603 ------i~~a~~viv~~~ 614 (791)
....|++|-..+
T Consensus 73 ~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 135677766553
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.1 Score=51.70 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=60.2
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
|+.++|.|..|.. +|+.|. +.|++|.+.|.++. ..+.+++.|..+..| .+++.+ +++|.||
T Consensus 1 ~~~~iGiggsGm~~la~~L~----------~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~~-----~~~d~vV 63 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILL----------NRGYQVSGSDIAENATTKRLEALGIPIYIG--HSAENL-----DDADVVV 63 (448)
T ss_pred CEEEEEECHHHHHHHHHHHH----------HCCCeEEEECCCcchHHHHHHHCcCEEeCC--CCHHHC-----CCCCEEE
Confidence 4788999999998 999998 89999999997654 345567778888766 445443 5688776
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+..+=+..|- ....||+.+ ++|+-+
T Consensus 64 ~spgi~~~~p-~~~~a~~~~--i~v~~~ 88 (448)
T TIGR01082 64 VSAAIKDDNP-EIVEAKERG--IPVIRR 88 (448)
T ss_pred ECCCCCCCCH-HHHHHHHcC--CceEeH
Confidence 6544334443 345566654 566643
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.2 Score=49.39 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc---C-----
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---G----- 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a---g----- 602 (791)
...+-|+|+|-+|--+|-.+. +.|.+|+-+|.|+++++.+.+- ...+ .++.++++++++ |
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA----------~~G~~ViG~DIn~~~Vd~ln~G-~~~i-~e~~~~~~v~~~v~~g~lraT 76 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFA----------SAGFKVIGVDINQKKVDKLNRG-ESYI-EEPDLDEVVKEAVESGKLRAT 76 (436)
T ss_pred ceEEEEEccccccHHHHHHHH----------HcCCceEeEeCCHHHHHHHhCC-ccee-ecCcHHHHHHHHHhcCCceEe
Confidence 357999999999999999998 8999999999999999988753 2222 277777655543 2
Q ss_pred -----CCCCcEEEEEeCC
Q 003861 603 -----ITSPKAVMIMYTD 615 (791)
Q Consensus 603 -----i~~a~~viv~~~~ 615 (791)
++.||+++++.+.
T Consensus 77 td~~~l~~~dv~iI~VPT 94 (436)
T COG0677 77 TDPEELKECDVFIICVPT 94 (436)
T ss_pred cChhhcccCCEEEEEecC
Confidence 3389999998764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.78 E-value=6.6 Score=42.66 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=73.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+-++.|+|.|++|+.....+.+ ..+.+++ ++|.|++. .+.+++.|.+..+.| -++.+++...++.|
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~---------~~~velvAVvdid~es~gla~A~~~Gi~~~~~~--ie~LL~~~~~~dID 72 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILR---------SEHLEPGAMVGIDPESDGLARARRLGVATSAEG--IDGLLAMPEFDDID 72 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhc---------CCCcEEEEEEeCChhhHHHHHHHHcCCCcccCC--HHHHHhCcCCCCCC
Confidence 3469999999999998877762 4455654 67888864 355666776665422 24455544567899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--------hhHHHHHH-CCCCeEEcCcHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--------MHLLDLKK-AGATDAILENAET 663 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--------~~~~~L~~-~Gad~Vi~p~~~~ 663 (791)
.++.+++++ .....+..+.+.+ .+++....-- -|.+.+.+ .+.+.|.+|...+
T Consensus 73 iVf~AT~a~-~H~e~a~~a~eaG--k~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 73 IVFDATSAG-AHVRHAAKLREAG--IRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred EEEECCCHH-HHHHHHHHHHHcC--CeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 999998874 4455555666553 3444322211 22233333 4577888888543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.7 Score=46.79 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=55.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCH---HHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRP---AVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~---~~L~~agi~~a~ 607 (791)
+++|+|.|++|.-.+...+ ..| .+|+++|.++++.+.+++ .+...+.-+..+. ..++.-+=..+|
T Consensus 171 ~V~V~GaGpIGLla~~~a~----------~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAK----------LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCC
Confidence 7999999999999888776 566 578888999999999988 5666665544431 222333335799
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++...
T Consensus 241 ~vie~~G~~~ 250 (350)
T COG1063 241 VVIEAVGSPP 250 (350)
T ss_pred EEEECCCCHH
Confidence 9999999543
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.4 Score=48.97 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+.+.|+|+|++|+.+|+.|+ ..|.+|++.|...+...... ..............+.|++ =++++
T Consensus 159 gktvGIiG~G~IG~~vA~~l~----------afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~a 227 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLR----------PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEA 227 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhC
Confidence 457899999999999999998 89999999998643211110 0000000000001122322 13568
Q ss_pred cEEEEEeCCHHH--HHHHHHHHHHhCCCCc
Q 003861 607 KAVMIMYTDKKR--TIEAVQRLRLAFPAIP 634 (791)
Q Consensus 607 ~~viv~~~~d~~--n~~~~~~ar~l~p~~~ 634 (791)
|.|++..+..++ ++.-......+.|+..
T Consensus 228 DiVvl~lPlt~~T~~li~~~~l~~Mk~ga~ 257 (347)
T PLN02928 228 DIVVLCCTLTKETAGIVNDEFLSSMKKGAL 257 (347)
T ss_pred CEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence 888888775433 3333455555555543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=1.2 Score=46.96 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. +.+|+.+++.|. +.|++|++.+.+++..++.. +. ....+.+|.+|++.++++-
T Consensus 11 k~~lItGa~~~iG~~ia~~l~----------~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYA----------KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 45777776 789999999998 88999999999988765543 22 3567899999999876531
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
....|++|.+.
T Consensus 81 ~~~~~~~id~li~~a 95 (265)
T PRK07097 81 IEKEVGVIDILVNNA 95 (265)
T ss_pred HHHhCCCCCEEEECC
Confidence 24578777655
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.39 Score=61.29 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=62.2
Q ss_pred CCCCEEEeCCCh--hHH---------HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~---------~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.++.++|+|.|. +|| ++++.|+ +.|+++++|+.||+.+..-.+.....++-+.+-++++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr----------~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl 642 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQ----------DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVL 642 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHH----------HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHH
Confidence 467899999996 675 3669998 8999999999999986532233344555566777788
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIE 621 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~ 621 (791)
+-+.-+++|+|+...+.+..+..
T Consensus 643 ~i~~~e~~d~Vi~~~Ggq~~l~l 665 (1102)
T PLN02735 643 NVIDLERPDGIIVQFGGQTPLKL 665 (1102)
T ss_pred HHHHHhCCCEEEECCCchHHHHH
Confidence 88899999999888887654443
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.4 Score=46.65 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCCCEEE---eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-------hhHHHHHhc--CCCEEEccCCCHHH
Q 003861 530 GSEPVVI---VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-------SVVKESRKL--GFPILYGDASRPAV 597 (791)
Q Consensus 530 ~~~~viI---~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-------~~v~~~~~~--~~~~v~GD~t~~~~ 597 (791)
.+++.++ +|.+.-...-++.|. +.|.+++++|... +.++++++. +..++.||....+-
T Consensus 233 ~~~~l~vgaavg~~~~~~~r~~~l~----------~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~ 302 (505)
T PLN02274 233 KDGKLLVGAAIGTRESDKERLEHLV----------KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQ 302 (505)
T ss_pred CCCCEEEEEEEcCCccHHHHHHHHH----------HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHH
Confidence 4566655 566677788889998 8999999999865 346777763 68888999988887
Q ss_pred HHhcCCCCCcEEEEEe-------CC--------HHHHHHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCCCCeEEcCc
Q 003861 598 LLSAGITSPKAVMIMY-------TD--------KKRTIEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 598 L~~agi~~a~~viv~~-------~~--------d~~n~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
-+.+--..||+|.+.. +. ...++..+..+.+.. +++||| ..++..+..+...+||+.|+.-.
T Consensus 303 a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred HHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 6666666788886641 11 112333333333332 478998 57788999999999999998866
Q ss_pred H
Q 003861 661 A 661 (791)
Q Consensus 661 ~ 661 (791)
.
T Consensus 382 ~ 382 (505)
T PLN02274 382 F 382 (505)
T ss_pred h
Confidence 3
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.55 Score=52.84 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=44.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.-.|+|+|.|..|..+|-.|. +.|++|+++|.++.........+...+.-.+...++|++.|+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La----------~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALA----------DAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHh----------cCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 347999999999999999998 8999999999986421111111223333445556677777764
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=87.59 E-value=0.91 Score=55.03 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCC-CCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHH-HHhcCCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNT-VGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAV-LLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~-~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~-L~~agi~~ 605 (791)
..++|+|.|. |-+|+.+++.|. + .|++|+++|.+++...... +.+++++.||.+|++. ++++ +++
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll----------~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~ 382 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLL----------RDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKK 382 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHH----------hCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcC
Confidence 3457999995 999999999998 5 4799999999876544332 3468889999998654 4433 456
Q ss_pred CcEEE
Q 003861 606 PKAVM 610 (791)
Q Consensus 606 a~~vi 610 (791)
+|+|+
T Consensus 383 ~D~Vi 387 (660)
T PRK08125 383 CDVVL 387 (660)
T ss_pred CCEEE
Confidence 88777
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=87.50 E-value=3.6 Score=39.15 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred HhcCCCEEEc--cCCCHHHHHhcCCCCCcEEEEEeCCH--HHH-HHHHHHHHHhCC-CCcEEEEe-cChhhHHHHHHCCC
Q 003861 581 RKLGFPILYG--DASRPAVLLSAGITSPKAVMIMYTDK--KRT-IEAVQRLRLAFP-AIPIYARA-QDMMHLLDLKKAGA 653 (791)
Q Consensus 581 ~~~~~~~v~G--D~t~~~~L~~agi~~a~~viv~~~~d--~~n-~~~~~~ar~l~p-~~~iiara-~~~~~~~~L~~~Ga 653 (791)
+..|+.+++. |.+-++..+.+-=+++|.+.++.-+. ..+ -.++..+|+.++ ++++++-- .-++..+.|+++|+
T Consensus 27 ~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 27 ADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 4455665552 44556677777778899877776543 222 234555666655 45676652 33455778999999
Q ss_pred CeEEcCcHHH
Q 003861 654 TDAILENAET 663 (791)
Q Consensus 654 d~Vi~p~~~~ 663 (791)
|.++.|....
T Consensus 107 d~~~~~gt~~ 116 (132)
T TIGR00640 107 AEIFGPGTPI 116 (132)
T ss_pred CEEECCCCCH
Confidence 9999998643
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.3 Score=49.55 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.7
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 573 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d 573 (791)
.+.++.|+|. |.+|..+++.|++ ..+++|+.+|.+
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~---------~~~~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRT---------RMQLEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh---------cCCCEEEEEcCC
Confidence 3568999999 9999999999982 348889999975
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.3 Score=46.44 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ . ...++.+|.+|++.++++
T Consensus 7 k~~lItGas~giG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFA----------REGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46777776 689999999998 899999999999887665432 2 255778999999866543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 77 ~~~~~~~id~li~~ag 92 (254)
T PRK07478 77 AVERFGGLDIAFNNAG 92 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1236777775553
|
|
| >PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.1 Score=42.06 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHhhcccCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhH
Q 003861 114 GLDTLTFLAVTVIVVPVFKIARASP--ILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF 191 (791)
Q Consensus 114 ~~~~~llL~~a~l~~~l~~rl~lP~--ivg~ilaGillGp~gli~~~~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~ 191 (791)
.....+++.++.+.+.+++|+|+|. ++|-++.+.++.-.+ ..+...=+.+..++.+++--.+|.+++.+.+|+.+|.
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~-~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG-GPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHH
Q 003861 192 AFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVV 244 (791)
Q Consensus 192 ~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~all 244 (791)
........+..-......... ++.+.| .++..+++
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~----------l~~~~~--------~~~~t~~L 267 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWL----------LSRLTG--------IDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHC--------CCHHHHHH
|
The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH. |
| >TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family | Back alignment and domain information |
|---|
Probab=87.36 E-value=17 Score=39.80 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhcccCCcCCc---hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHH
Q 003861 124 TVIVVPVFKIARASPILGFFFAGIVLNQLGIIRNL---TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQV 200 (791)
Q Consensus 124 a~l~~~l~~rl~lP~ivg~ilaGillGp~gli~~~---~~l~~l~elgl~~lLF~~Gleldl~~Lk~~~~~~~~la~~~~ 200 (791)
......+.+-++-|.+.+.++ |+++...|+--+. +.++.+++....+-||..|+.++.+++++.++........-.
T Consensus 170 ~~~~~~~~~~~~nP~iia~i~-Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 170 LMLIFVWKKLIKFPPLWAPLL-SVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHHHHHHHHHhCCChHHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 003861 201 VLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILL 280 (791)
Q Consensus 201 llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~~~~~~g~l~l~~~~ 280 (791)
++.=+++..+ ..+++ -.....-...+.+..-+++...++.++--.+.+.....+..+.
T Consensus 249 il~P~i~~~~-------------~~~~~---------l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT 306 (321)
T TIGR00946 249 LVQPAVMAGI-------------SKLIG---------LRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLST 306 (321)
T ss_pred HHHHHHHHHH-------------HHHhC---------CChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHH
Q 003861 281 LQDIAVVPLLVIL 293 (791)
Q Consensus 281 l~Di~~v~~l~i~ 293 (791)
+--+..+++...+
T Consensus 307 ~ls~~tlp~~~~l 319 (321)
T TIGR00946 307 VLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHH
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.35 E-value=0.75 Score=55.68 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...|..|. +.|++|+++|.+++ ..+.+++.|..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~----------~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA----------RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 3568999999999999999998 88999999998754 2444566676665
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~ 615 (791)
.+.....+ .+++. ..++|+++++++.
T Consensus 396 ~~~~v~~~i~~~~~-~~~~DavilAtGa 422 (654)
T PRK12769 396 LNCEVGKDISLESL-LEDYDAVFVGVGT 422 (654)
T ss_pred CCCEeCCcCCHHHH-HhcCCEEEEeCCC
Confidence 43211000 11111 1468999999875
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.5 Score=45.95 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHHhcCCCEEEccCCCHHHHHhc------CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSA------GI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi 603 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+ ++..+++++.+...+.+|.+|++.++++ ..
T Consensus 8 k~~lItGas~gIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFL----------REGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46778875 899999999998 889999887654 4455566656788899999999887654 12
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
.+.|.+|-+.
T Consensus 78 ~~id~li~~a 87 (255)
T PRK06463 78 GRVDVLVNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 4678777654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.4 Score=42.40 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=46.9
Q ss_pred eCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c---CCCEEEccCCCHHHHHhcCC-CCCcE
Q 003861 537 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSAGI-TSPKA 608 (791)
Q Consensus 537 ~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~---~~~~v~GD~t~~~~L~~agi-~~a~~ 608 (791)
||.|+++..+++.+ ..+.+++.+|.+++.++.+++ . ..+++++|.++ +.+. + +++|.
T Consensus 12 cG~G~~~~~l~~~~-----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~-~~~~~D~ 76 (152)
T PF13847_consen 12 CGTGRLLIQLAKEL-----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQE-LEEKFDI 76 (152)
T ss_dssp -TTSHHHHHHHHHS-----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGC-SSTTEEE
T ss_pred CcCcHHHHHHHHhc-----------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccc-cCCCeeE
Confidence 66779999999876 357789999999999888865 2 35788999988 3332 3 79998
Q ss_pred EEEE
Q 003861 609 VMIM 612 (791)
Q Consensus 609 viv~ 612 (791)
|+..
T Consensus 77 I~~~ 80 (152)
T PF13847_consen 77 IISN 80 (152)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7776
|
... |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=1.3 Score=46.00 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=51.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHH----HHhc--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKE----SRKL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~----~~~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++ ..+. +++. ....+.+|.+|++.++++
T Consensus 7 k~vlItGasggiG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILA----------GAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 46888886 899999999998 88999999887643 3332 2222 346788999999877542
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
.....|.+|...
T Consensus 77 ~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 77 TAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHhCCCCcEEEECC
Confidence 223577776554
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=87.25 E-value=4.9 Score=43.39 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|.|++|+..+..+.+ ..+.+++ ++|.|++. .+.+++.|.+..+.|. ++.+++ ++.|+|
T Consensus 3 rVAIIG~G~IG~~h~~~ll~---------~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~--e~ll~~---~dIDaV 68 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR---------SEHLEMVAMVGIDPESDGLARARELGVKTSAEGV--DGLLAN---PDIDIV 68 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh---------CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCH--HHHhcC---CCCCEE
Confidence 58899999999988776651 4566665 46888875 4556677877766432 334433 478999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec--------ChhhHHHHH-HCCCCeEEcCcHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--------DMMHLLDLK-KAGATDAILENAE 662 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~--------~~~~~~~L~-~~Gad~Vi~p~~~ 662 (791)
++++++. .-...+..+.+.+ .+++.... -+-+.+... ..+.+.|.+|...
T Consensus 69 ~iaTp~~-~H~e~a~~al~aG--k~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~a 127 (285)
T TIGR03215 69 FDATSAK-AHARHARLLAELG--KIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQA 127 (285)
T ss_pred EECCCcH-HHHHHHHHHHHcC--CEEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHH
Confidence 9999886 3344555666654 34432211 112233333 3456777787753
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.83 Score=50.02 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.++ ..|.+|...|..+... +.++.. .+-++. ++++|.|+
T Consensus 145 gktvGIiG~G~IG~~vA~~~~----------~fgm~V~~~d~~~~~~----~~~~~~----~~l~el-----l~~sDvv~ 201 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQ----------AFGAKVVYYSTSGKNK----NEEYER----VSLEEL-----LKTSDIIS 201 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hcCCEEEEECCCcccc----ccCcee----ecHHHH-----hhcCCEEE
Confidence 457999999999999999998 8899999999753211 112211 111223 35678887
Q ss_pred EEeCCH--HHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTDK--KRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d--~~n~~~~~~ar~l~p~~~ii 636 (791)
+..+-. ..++.-......+.|+..+|
T Consensus 202 lh~Plt~~T~~li~~~~~~~Mk~~a~lI 229 (311)
T PRK08410 202 IHAPLNEKTKNLIAYKELKLLKDGAILI 229 (311)
T ss_pred EeCCCCchhhcccCHHHHHhCCCCeEEE
Confidence 777643 33444455566666654433
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.23 E-value=0.82 Score=46.87 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=38.1
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
...++|.|+|.|.+|.-+|+.-. ..|++|.++|.|++...+++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a----------~sg~~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAA----------TSGLNVWLVDANEDALSRAT 51 (298)
T ss_pred ccccceEEEcccccchhHHHHHH----------hcCCceEEecCCHHHHHHHH
Confidence 34679999999999999999887 89999999999999877665
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=87.23 E-value=14 Score=40.42 Aligned_cols=138 Identities=17% Similarity=0.205 Sum_probs=81.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHHhcC----CCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESRKLG----FPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~~~~----~~~v~GD~t~~~~L~~ag 602 (791)
+.++.|+|.|.+|..++..|.. .....+++++|.+++..+ ++.+.. ..-+.+ .+|.+ .
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~--------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~-~~dy~-----~ 68 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA--------KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA-DKDYS-----V 68 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE-CCCHH-----H
Confidence 4589999999999999998861 133447999999887532 222211 123332 12333 2
Q ss_pred CCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcC-cH
Q 003861 603 ITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE-NA 661 (791)
Q Consensus 603 i~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p-~~ 661 (791)
+++||.||++.+. | +.|..+ +..+++.+|+..++. +.|+.+. ..+.+ .|. ++|+-- ..
T Consensus 69 ~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~viv-vsNP~d~~t~~~~k~sg~p~~~viG~gt~ 147 (312)
T cd05293 69 TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLV-VSNPVDIMTYVAWKLSGLPKHRVIGSGCN 147 (312)
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ccChHHHHHHHHHHHhCCCHHHEEecCch
Confidence 5889988886542 1 345543 455666778755444 4455443 23333 344 356654 44
Q ss_pred HHHHHHHHHHHhhcCCChHHHH
Q 003861 662 ETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~~~~~ 683 (791)
+-..|+-+.+-+.+++++..++
T Consensus 148 Ld~~R~~~~la~~l~v~~~~v~ 169 (312)
T cd05293 148 LDSARFRYLIAERLGVAPSSVH 169 (312)
T ss_pred HHHHHHHHHHHHHhCCChhhEE
Confidence 4455666666667777776544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.84 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+++|+|.|..|-++|..|. +.|.+|++++.++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~----------~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA----------ELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HhCcEEEEEeccchh
Confidence 4799999999999999998 899999999987764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.3 Score=46.44 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++.+.+++..++.. +.+ ...+.+|.+|++.++++
T Consensus 10 k~~lItGas~giG~~ia~~L~----------~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLA----------EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 35777775 789999999998 88999999999987755442 222 45678999999877653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1245787776654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.7 Score=44.57 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc--CCCCCcEEE
Q 003861 538 GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--GITSPKAVM 610 (791)
Q Consensus 538 G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a--gi~~a~~vi 610 (791)
|-|.+|+.+++.|. ++|++|++++.+++..+...+ .+.+++.+|.+|++.++++ ...+.|.+|
T Consensus 5 as~~iG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li 74 (230)
T PRK07041 5 GSSGIGLALARAFA----------AEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVV 74 (230)
T ss_pred CCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEE
Confidence 45789999999998 889999999999887665432 2466889999999988764 345678777
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-..+
T Consensus 75 ~~ag 78 (230)
T PRK07041 75 ITAA 78 (230)
T ss_pred ECCC
Confidence 7654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.3 Score=46.90 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h--cCCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~--~~~~~v~GD~t~~~~L~~a---- 601 (791)
+++|.|. |.+|+.+++.|. +.|.+|++++.+++..+.+. + ....++.+|.+|++.++++
T Consensus 2 ~vlVtGasggIG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWA----------REGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4667665 899999999998 88999999999988755432 2 2356788999998877653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246777776544
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.4 Score=48.00 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH---HHHHh-----cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK-----LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v---~~~~~-----~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.| .|-+|+.+++.|. +.|++|+++..|++.. +...+ .....+.+|.+|++.++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLL----------LRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-
Confidence 4688888 5999999999998 7899998776555432 22211 2467889999999988765
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
++.+|+|+-+.
T Consensus 75 ~~~~d~vih~A 85 (322)
T PLN02986 75 IEGCDAVFHTA 85 (322)
T ss_pred HhCCCEEEEeC
Confidence 23577776555
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=1 Score=54.32 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=55.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...|..|. +.|++|+++|.++. ..+.+++.|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~----------~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA----------RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence 3578999999999999999998 78999999998873 3455667787776
Q ss_pred EccCC-CHHHHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDAS-RPAVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t-~~~~L~~agi~~a~~viv~~~~ 615 (791)
.+-.- ....+++. ..++|+++++++.
T Consensus 379 ~~~~v~~~~~~~~l-~~~~DaV~latGa 405 (639)
T PRK12809 379 LNCEIGRDITFSDL-TSEYDAVFIGVGT 405 (639)
T ss_pred cCCccCCcCCHHHH-HhcCCEEEEeCCC
Confidence 65321 11122222 2468999999886
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.5 Score=48.09 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc----CCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~----~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+++.|+|.|.+|+..++.+.. .....++.+.+.++++.+++.+. +..+.. ..+.+ + -+++|
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~--------~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~--~~~~~---~-av~~a 190 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHAS--------VRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV--VTDLE---A-AVRQA 190 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHh--------cCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE--eCCHH---H-HHhcC
Confidence 4579999999999999986641 03357899999999998776543 333332 22222 1 23689
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
|.|+.+|++.+ - +.....+.|+..|.+.-.
T Consensus 191 DIVi~aT~s~~-p---vl~~~~l~~g~~i~~ig~ 220 (314)
T PRK06141 191 DIISCATLSTE-P---LVRGEWLKPGTHLDLVGN 220 (314)
T ss_pred CEEEEeeCCCC-C---EecHHHcCCCCEEEeeCC
Confidence 98877777652 2 122345567766555433
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.3 Score=45.82 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCEEEeCCCh-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|.++ +|+.+++.|. ++|.+|++++.+++..++..+ .+ ...+..|.+|++.++++
T Consensus 6 k~~lVtGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFA----------RLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred eEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 4678888755 9999999998 899999999999988665432 23 34556788888877642
Q ss_pred ---CCC-CCcEEEEEe
Q 003861 602 ---GIT-SPKAVMIMY 613 (791)
Q Consensus 602 ---gi~-~a~~viv~~ 613 (791)
... +.|.+|...
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 123 567766655
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=87.08 E-value=2.3 Score=52.03 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHH---HHH---
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLL--- 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~---~L~--- 599 (791)
-+++.|+|.|.+|..+|..+. ..|++|+++|.|++..++..+. ...+-.|-.+.++ .+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSA----------SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEECCchHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 457999999999999999998 7899999999999987654321 0011122222211 111
Q ss_pred ----hcCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 600 ----SAGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 600 ----~agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
-..+++||.||=+..+|.+ --.+-..+-+.-+.-.|+|.-.+.-....+
T Consensus 383 ~~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~i 436 (714)
T TIGR02437 383 PTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLL 436 (714)
T ss_pred EeCCHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 1246899999888877632 222222333333322566665555444444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=3.7 Score=43.83 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=64.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCCh--hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~--~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+|++|+.+++.+.+ ..+.+++.+ +.++ ++.......+. .++ +|.+.+ -.++|.+
T Consensus 3 rVgIiG~G~iG~~~~~~l~~---------~~~~~l~~v~~~~~~~~~~~~~~~~~~-~~~---~d~~~l----~~~~DvV 65 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEH---------DPDLRVDWVIVPEHSIDAVRRALGEAV-RVV---SSVDAL----PQRPDLV 65 (265)
T ss_pred EEEEECCCHHHHHHHHHHhh---------CCCceEEEEEEcCCCHHHHhhhhccCC-eee---CCHHHh----ccCCCEE
Confidence 58999999999999999972 335555443 3322 22221111122 222 233333 3679999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEe----cChhhHH----HHHHCCCCeEEcCcHHHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA----QDMMHLL----DLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara----~~~~~~~----~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
+.+++.+.. ...+..+-+.+ .++++.. .+.+..+ ..++.|..-.+.+....+..+-+
T Consensus 66 ve~t~~~~~-~e~~~~aL~aG--k~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 66 VECAGHAAL-KEHVVPILKAG--IDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred EECCCHHHH-HHHHHHHHHcC--CCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 999987644 34444444443 4555432 2333333 34667886666666555544443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.3 Score=44.28 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHh-cCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLS-AGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~-agi~~a~ 607 (791)
.+.++|.|.|.+|...++.++ ..|.+ |+++|.++++.+.+++.|...+. |..+ .+.+++ .+-..+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak----------~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAA----------AAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCC
Confidence 457899999999999999887 78987 88899999999988888865443 2222 222322 2334689
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+++++.
T Consensus 190 ~vid~~G~~~ 199 (280)
T TIGR03366 190 VALEFSGATA 199 (280)
T ss_pred EEEECCCChH
Confidence 8887777644
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.1 Score=55.72 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCEEEeCCChhHHHH-HHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVL-ANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~l-a~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+|+.|+|.|..|... |+.|. +.|++|.+-|.++. ..+++++.|..+..|. +++.+ +++|.|
T Consensus 5 ~~i~viG~G~sG~salA~~L~----------~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~--~~~~~-----~~~d~v 67 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILL----------DRGYSVSGSDLSEGKTVEKLKAKGARFFLGH--QEEHV-----PEDAVV 67 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHH----------HCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHc-----CCCCEE
Confidence 479999999999998 99998 89999999997653 4556777888888776 33433 567877
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|...+=..+|-. ...||+.+ ++|+-+
T Consensus 68 V~SpgI~~~~p~-~~~a~~~g--i~v~~~ 93 (809)
T PRK14573 68 VYSSSISKDNVE-YLSAKSRG--NRLVHR 93 (809)
T ss_pred EECCCcCCCCHH-HHHHHHCC--CcEEeH
Confidence 665543444443 44566654 566554
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.4 Score=51.84 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHH---HHHh---
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLLS--- 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~---~L~~--- 600 (791)
++|.|+|.|.+|..+|..+. ..|++|+++|.+++..++..+. ...+-.|..+..+ .+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA----------SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred ceEEEECCchhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 57999999999999999998 8899999999999986553321 0011112222111 1111
Q ss_pred ----cCCCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 601 ----AGITSPKAVMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 601 ----agi~~a~~viv~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
..+++||.||=+..+|.+ --.+-..+-+.-|.-.|++.-.+.-....+
T Consensus 384 ~~~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~l 436 (715)
T PRK11730 384 TLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLL 436 (715)
T ss_pred eCCHHHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 235789999888777632 222223333333332466655544444444
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.82 Score=49.22 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=50.2
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHH--HHHhcCCC-EEEccCCCHHHHHhcCCCCCcEEE
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVK--ESRKLGFP-ILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~--~~~~~~~~-~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.=|.|-+|+.++++|. +.| ++|.++|.++.... ...+.+.. +++||.+|++.++++ ++.+|+|+
T Consensus 3 TGgsGflG~~iv~~Ll----------~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a-~~g~d~V~ 71 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLL----------ERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA-LEGVDVVF 71 (280)
T ss_pred EcCCcHHHHHHHHHHH----------HCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH-hcCCceEE
Confidence 3478999999999998 788 78999998776432 34444444 889999999999875 46678776
Q ss_pred EE
Q 003861 611 IM 612 (791)
Q Consensus 611 v~ 612 (791)
=+
T Consensus 72 H~ 73 (280)
T PF01073_consen 72 HT 73 (280)
T ss_pred Ee
Confidence 55
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.84 E-value=2.4 Score=47.89 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=55.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|+|.+|+-+++.|. +.| ..+++...+.++.+++.+ .+ +++..-+-|. .-+.++|.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~----------~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~Dv 241 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLA----------EKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEADV 241 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHH----------hCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHH-HhhhhCCE
Confidence 457999999999999999998 777 578888999999888764 45 3443333333 35789999
Q ss_pred EEEEeCCHH
Q 003861 609 VMIMYTDKK 617 (791)
Q Consensus 609 viv~~~~d~ 617 (791)
||.+|+...
T Consensus 242 VissTsa~~ 250 (414)
T COG0373 242 VISSTSAPH 250 (414)
T ss_pred EEEecCCCc
Confidence 999988753
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.3 Score=46.48 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFA----------REGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 45777776 689999999998 899999999999887655432 1245788999999877653
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 78 ~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHhCCCcEEEECCC
Confidence 1246777776543
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.95 Score=52.52 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++++|+|.|..|...|..|. +.|++|+++|.++. ..+.+.+.|..+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLA----------RAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 78999999997642 2344566777776
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~d 616 (791)
.+.....+ ..++. ..++|.++++++..
T Consensus 212 ~~~~v~~~~~~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 212 TNVEVGKDITAEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred eCCEECCcCCHHHH-HhhCCEEEEecCCC
Confidence 65433211 11111 14689999998873
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.82 E-value=1.1 Score=48.25 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=70.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|.|..|+.++..|. +.| .+|++++.++++.+.+.+.-......+. +.+ + ...+.++|.|
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~----------~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~-~-~~~~~~~Div 189 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLL----------DLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLE-L-QEELADFDLI 189 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhccceee-ccc-c-hhccccCCEE
Confidence 347999999999999999998 788 7899999999998777543111000011 000 0 1345789999
Q ss_pred EEEeCCHHHH-HHH-HHHHHHhCCCCcEEEEecChhh---HHHHHHCCCCeEEcCcHHHHHHHHH
Q 003861 610 MIMYTDKKRT-IEA-VQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAETSLQLGS 669 (791)
Q Consensus 610 iv~~~~d~~n-~~~-~~~ar~l~p~~~iiara~~~~~---~~~L~~~Gad~Vi~p~~~~~~~la~ 669 (791)
|-+|+..... ... -.....+.++..++=-+.++.. .+..++.|+ .++.-....-.+-+.
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~Ml~~Qa~~ 253 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGA-RTIDGLGMLVHQAAE 253 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcC-eecCCHHHHHHHHHH
Confidence 8888754211 000 0011223333333333344443 344567788 455655433333333
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.3 Score=55.76 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---------------------hHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---------------------~v~~~~~~~~~~v 588 (791)
..++|+|+|.|+-|-+.|..|. +.|++|+++|.++. .++.+++.|..+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La----------r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA----------VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEE
Confidence 3578999999999999999998 89999999998642 2445667787766
Q ss_pred EccCCCH-HHHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRP-AVLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~-~~L~~agi~~a~~viv~~~~ 615 (791)
.+..... -++++..-.++|+|+++++.
T Consensus 375 ~n~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 375 KNFVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeEEeccEEeHHHhccccCCEEEEeCCC
Confidence 5432211 13444333579999999986
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.77 E-value=0.81 Score=51.57 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi 603 (791)
..|+|+|.|..|-.+|..|. +.|++|+++|..++.. .+.+ ..+.-.+...+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~----------~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALA----------RAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHH----------hCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 47999999999999999998 8999999999983322 2222 455556666778888887
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.77 E-value=4.2 Score=37.40 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+++|+=+|-|++- .+|+.|+ +.|.+++++|.++.... +|.+.+.-|.|+|+.=- -+.||++
T Consensus 13 ~~gkVvEVGiG~~~-~VA~~L~----------e~g~dv~atDI~~~~a~----~g~~~v~DDitnP~~~i---Y~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFL-DVAKRLA----------ERGFDVLATDINEKTAP----EGLRFVVDDITNPNISI---YEGADLI 74 (129)
T ss_pred cCCcEEEEccchHH-HHHHHHH----------HcCCcEEEEecccccCc----ccceEEEccCCCccHHH---hhCccce
Confidence 46689999999986 5788998 89999999999999543 79999999999997543 2567777
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
-..-+-.|---.+...+|..+-.+.|.-
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 6666666666667778888765444433
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=5.7 Score=46.37 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=80.9
Q ss_pred EeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC---Chh----hHHHHHhc--CCCEEEccCCCHHHHHhcCCCCC
Q 003861 536 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPS----VVKESRKL--GFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 536 I~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~---d~~----~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a 606 (791)
.+|.+.--...++.|. +.|.+++++|. +.. .++++++. +..++-|+..+.+.-+.+--..|
T Consensus 235 avg~~~~~~~~~~~l~----------~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 235 AISTRPEDIERAAALI----------EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EECCCHHHHHHHHHHH----------HCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 4677666678888898 89999999997 332 46666654 67899999998877555544556
Q ss_pred cEEEEEeC-------C-------H-HHH-HHHHHHHHHhCCCCcEEE--EecChhhHHHHHHCCCCeEEcCcH
Q 003861 607 KAVMIMYT-------D-------K-KRT-IEAVQRLRLAFPAIPIYA--RAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 607 ~~viv~~~-------~-------d-~~n-~~~~~~ar~l~p~~~iia--ra~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
|.+.+..+ . + ... ..++..+++. ++++|+ ...++.+..+...+|||.|+.-..
T Consensus 305 d~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 305 DGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred CEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 67765421 1 1 111 2333444444 479999 999999999999999999998774
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=5.9 Score=49.16 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=72.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++.. ...+..++.+|.+|++.++++ ++++|+||-
T Consensus 2 kILVTGATGfIGs~La~~Ll----------~~G~~Vv~l~R~~~~~---~~~~v~~v~gDL~D~~~l~~a-l~~vD~VVH 67 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLL----------SQGHEVVGIARHRPDS---WPSSADFIAADIRDATAVESA-MTGADVVAH 67 (854)
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCchhh---cccCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4788885 999999999998 8899999999875421 123578899999999888764 346888877
Q ss_pred EeCC----HHHHHHH----HHHHHHhCCCCcEEEEecCh---hhHHHHHHCCCCeEEc
Q 003861 612 MYTD----KKRTIEA----VQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAIL 658 (791)
Q Consensus 612 ~~~~----d~~n~~~----~~~ar~l~p~~~iiara~~~---~~~~~L~~~Gad~Vi~ 658 (791)
+... .+.|+.. +..+++.+.+ ++|- ..+. ..++.+++.|.+.++.
T Consensus 68 lAa~~~~~~~vNv~GT~nLLeAa~~~gvk-r~V~-iSS~~K~aaE~ll~~~gl~~vIL 123 (854)
T PRK05865 68 CAWVRGRNDHINIDGTANVLKAMAETGTG-RIVF-TSSGHQPRVEQMLADCGLEWVAV 123 (854)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHcCCC-eEEE-ECCcHHHHHHHHHHHcCCCEEEE
Confidence 6532 2345443 3444544422 3322 2322 3344556678776543
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=2.4 Score=45.93 Aligned_cols=72 Identities=17% Similarity=0.039 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----Hh----cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RK----LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~----~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+.+ .+ ....++.+|.+|++.++++
T Consensus 17 k~vlItGas~gIG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALA----------AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHH
Confidence 46777776 899999999998 7899999999988765433 21 1355788999999877653
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|++|-..
T Consensus 87 ~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 87 DALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHhhCCCCCEEEECC
Confidence 234678776655
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=1.6 Score=45.01 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~ 607 (791)
.+.+++|+|+|..|+.+++.+.. ...|++++ ++|.|+++..... .+.++ .+. +.+.+. .-.++|
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~--------~~~g~~ivgv~D~d~~~~~~~i-~g~~v--~~~---~~l~~li~~~~iD 148 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF--------EKRGFKIVAAFDVDPEKIGTKI-GGIPV--YHI---DELEEVVKENDIE 148 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc--------ccCCcEEEEEEECChhhcCCEe-CCeEE--cCH---HHHHHHHHHCCCC
Confidence 34579999999999999986430 14577766 5788887653211 12322 122 223322 224689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.++++++++... .++..+.+.+
T Consensus 149 ~ViIa~P~~~~~-~i~~~l~~~G 170 (213)
T PRK05472 149 IGILTVPAEAAQ-EVADRLVEAG 170 (213)
T ss_pred EEEEeCCchhHH-HHHHHHHHcC
Confidence 899998876543 3444455543
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.3 Score=46.42 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ .....+.+|.++++.++++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFL----------GLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 35677775 799999999998 889999999999887665542 1245678999998765432
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-+.+
T Consensus 80 ~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1246787777664
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.2 Score=46.65 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=52.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--C----CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--G----IT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--g----i~ 604 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++. ........++.+|.+|++.++++ . ..
T Consensus 7 k~~lItGas~gIG~~la~~l~----------~~g~~v~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFL----------AAGATVVVCGRRAPE--TVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCChhh--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677776 689999999998 889999999998865 22233467889999999877653 1 24
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
+.|.+|-+.
T Consensus 75 ~id~vi~~a 83 (252)
T PRK07856 75 RLDVLVNNA 83 (252)
T ss_pred CCCEEEECC
Confidence 568777654
|
|
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=45 Score=38.71 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCE-EEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~-v~GD~t~~~~L~~agi~~a~~ 608 (791)
+++++|+|.|.-|+.+++.|++ ..+.|++++ .+|.|+.. +.++ +.|+..| ..+-+.-.++|.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~-------~~~~g~~vVGfiDdd~~~-------g~~VpvlG~~~d--L~~~v~~~~Ide 206 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRN-------EPWLGFEVVGVYHDPKPG-------GVSNDWAGNLQQ--LVEDAKAGKIHN 206 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhc-------CccCCeEEEEEEeCCccc-------cCCCCcCCCHHH--HHHHHHhCCCCE
Confidence 4579999999999999999972 012355554 46765421 2222 3454333 222233467888
Q ss_pred EEEEeCCHH--HHHHHHHHHHHhCCCCcEEEEe
Q 003861 609 VMIMYTDKK--RTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 609 viv~~~~d~--~n~~~~~~ar~l~p~~~iiara 639 (791)
|+++.++.+ .-..+...+++...+++++-..
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~ivP~l 239 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLIPDV 239 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEecch
Confidence 888887643 3344556666665444444433
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.6 Score=46.28 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh---hhHHHHHhc--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~---~~v~~~~~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|.+ .+|+.+++.|. ++|++|++.+.++ +.++++.+. ....+..|.+|++..+++
T Consensus 7 k~~lITGas~~~GIG~aia~~la----------~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHH----------HCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHH
Confidence 468899987 59999999998 8999999998773 334444432 245678999999877753
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~~g~iD~linnA 92 (262)
T PRK07984 77 ELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHhhcCCCCEEEECC
Confidence 234567777555
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.5 Score=45.76 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=52.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|..+++.|. +.|++|++++.+++..+.+.+ .+ ...+..|.+|++..+++
T Consensus 9 k~vlItGas~gIG~~l~~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLA----------QQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45777775 788999999998 789999999999887655443 22 45778999999866542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 79 ~~~~~~~id~li~~a 93 (252)
T PRK07035 79 IRERHGRLDILVNNA 93 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776444
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.7 Score=45.97 Aligned_cols=72 Identities=15% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCEEEeCCCh---hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---hHHHHHhc-C-CCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRKL-G-FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~G~---~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---~v~~~~~~-~-~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|.++ +|+.+++.|. ++|++|++.+.+++ .++++.+. + ...+..|.+|++..+++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la----------~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAK----------KHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHH----------HcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 4678889974 9999999998 89999999887742 34444332 3 23567999998876543
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 79 ~~~~~~g~iDilVnna 94 (260)
T PRK06603 79 DIKEKWGSFDFLLHGM 94 (260)
T ss_pred HHHHHcCCccEEEEcc
Confidence 224567665543
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=86.44 E-value=4.4 Score=43.42 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=64.9
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC---H-HHHH-hcCCCCCcEEEEEeCCH
Q 003861 542 MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR---P-AVLL-SAGITSPKAVMIMYTDK 616 (791)
Q Consensus 542 ~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~---~-~~L~-~agi~~a~~viv~~~~d 616 (791)
+|..++-.|. +.|++|.+++.+ ++.+..++.|..+...+... + .+.. ....+.+|.+++++...
T Consensus 2 iG~~~a~~L~----------~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~ 70 (293)
T TIGR00745 2 VGSLYGAYLA----------RAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY 70 (293)
T ss_pred chHHHHHHHH----------hCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch
Confidence 5788888898 789999999997 67778887776544322110 0 1111 01245899999998875
Q ss_pred HHHHHHHHHHH-HhCCCCcEEEEecChhhHHHHHHC-CCCeE
Q 003861 617 KRTIEAVQRLR-LAFPAIPIYARAQDMMHLLDLKKA-GATDA 656 (791)
Q Consensus 617 ~~n~~~~~~ar-~l~p~~~iiara~~~~~~~~L~~~-Gad~V 656 (791)
.. ..+...++ .+.++..|+.-.|--.+.+.+++. +.+.|
T Consensus 71 ~~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v 111 (293)
T TIGR00745 71 QT-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARRI 111 (293)
T ss_pred hH-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccCE
Confidence 32 23333344 346666777777777777777654 44443
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.4 Score=46.49 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++.|+|+|++|+..++.+.+ ..+.+++. +|.++ +... .+..+ +.. .|.+.+ ..++|++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~---------~pd~ELVgV~dr~~~~~~~----~~~~v-~~~-~d~~e~----l~~iDVV 64 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQ---------QPDMELVGVFSRRGAETLD----TETPV-YAV-ADDEKH----LDDVDVL 64 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHh---------CCCcEEEEEEcCCcHHHHh----hcCCc-ccc-CCHHHh----ccCCCEE
Confidence 479999999999999999962 45778775 58885 4332 12332 222 222222 2789999
Q ss_pred EEEeCCHHH
Q 003861 610 MIMYTDKKR 618 (791)
Q Consensus 610 iv~~~~d~~ 618 (791)
+++++++..
T Consensus 65 iIctPs~th 73 (324)
T TIGR01921 65 ILCMGSATD 73 (324)
T ss_pred EEcCCCccC
Confidence 999987544
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=86.43 E-value=1.4 Score=50.32 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=57.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HH----HHH-hcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VK----ESR-KLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~----~~~-~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.++|.|..|..+|+.|. +.|++|.+-|.++.. .+ .++ +.|..+..| .+++.+ +++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~----------~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~~~~~-----~~~ 63 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLH----------KKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LHLEDL-----NNA 63 (433)
T ss_pred CEEEEEeCHhHHHHHHHHH----------HCCCEEEEEeCCCCccchhHHHHHhhccCcEEEec--CchHHh-----ccC
Confidence 3689999999999999998 899999999976542 21 123 357777776 334333 568
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.||...+=+.+|- ....||+.+ ++|+.+
T Consensus 64 d~vv~sp~i~~~~p-~~~~a~~~~--i~i~~~ 92 (433)
T TIGR01087 64 DLVVKSPGIPPDHP-LVQAAAKRG--IPVVGD 92 (433)
T ss_pred CEEEECCCCCCCCH-HHHHHHHCC--CcEEEH
Confidence 87766654444444 345566654 556554
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=86.40 E-value=6.4 Score=41.39 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|.|-.|..+++.|. ..|. +++++|.|.-....+. -+.++-+ ..+
T Consensus 24 ~~~VlvvG~GglGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~---RQ~l~~~---------~di------ 75 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLA----------AAGVGNLTLLDFDTVSLSNLQ---RQVLHSD---------ANI------ 75 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCcccccCcc---cceeeeH---------hhC------
Confidence 458999999999999999998 6675 5888887754332221 1222110 011
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~--~~~~L~~~Gad~Vi~p~ 660 (791)
+ ......+...+++.||+++|.+....-+ +...+- .++|-||.-.
T Consensus 76 ----G-~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~-~~~DlVvd~~ 122 (240)
T TIGR02355 76 ----G-QPKVESAKDALTQINPHIAINPINAKLDDAELAALI-AEHDIVVDCT 122 (240)
T ss_pred ----C-CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh-hcCCEEEEcC
Confidence 1 1234445788899999998777654332 222221 2678888543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.40 E-value=1.7 Score=47.87 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+-|+|+|++|+.+|+.++ .-|.++..-|..+. -+ .++. ..+-+.| -++.| +++|.+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~----------~Fgm~v~y~~~~~~-~~-~~~~-~~~~y~~--l~ell-----~~sDii~ 205 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK----------GFGMKVLYYDRSPN-PE-AEKE-LGARYVD--LDELL-----AESDIIS 205 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------cCCCEEEEECCCCC-hH-HHhh-cCceecc--HHHHH-----HhCCEEE
Confidence 457999999999999999998 88999999998875 11 1111 2222333 34444 4556555
Q ss_pred EEeCC--HHHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTD--KKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~--d~~n~~~~~~ar~l~p~~~ii 636 (791)
+..+- +..++.-....+.+.|++.+|
T Consensus 206 l~~Plt~~T~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 206 LHCPLTPETRHLINAEELAKMKPGAILV 233 (324)
T ss_pred EeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence 55443 334444456666666654443
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.97 Score=50.96 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~ 608 (791)
.+++++|+|.|+.|+.+++.+. +.|++++++|.+|+..... ..-..+..|.+|++.+.+. .-.+.|+
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~----------~~G~~v~~~~~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAMQ--VAHRSHVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCchHH--hhhheEECCCCCHHHHHHHHHHhCCCE
Confidence 3557999999999999999998 8899999999998752211 1123567788888776554 3346887
Q ss_pred EEEEeCC
Q 003861 609 VMIMYTD 615 (791)
Q Consensus 609 viv~~~~ 615 (791)
++...++
T Consensus 79 vi~~~e~ 85 (395)
T PRK09288 79 IVPEIEA 85 (395)
T ss_pred EEEeeCc
Confidence 7655443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=5.2 Score=41.09 Aligned_cols=66 Identities=24% Similarity=0.196 Sum_probs=46.5
Q ss_pred CEEEe--CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH----hcCCCCC
Q 003861 533 PVVIV--GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL----SAGITSP 606 (791)
Q Consensus 533 ~viI~--G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~----~agi~~a 606 (791)
.++=+ |.|.+.+.+++.. ..+..|+.||.++.. ...++.+++||.+++++++ ..+-+.+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~-----------~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQI-----------GDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred EEEEEcccCCHHHHHHHHHc-----------CCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 34444 5566777888766 345689999998821 2246889999999987654 3566789
Q ss_pred cEEEEEe
Q 003861 607 KAVMIMY 613 (791)
Q Consensus 607 ~~viv~~ 613 (791)
|.|+...
T Consensus 119 D~V~S~~ 125 (209)
T PRK11188 119 QVVMSDM 125 (209)
T ss_pred CEEecCC
Confidence 9887644
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.30 E-value=6.9 Score=43.11 Aligned_cols=139 Identities=16% Similarity=0.232 Sum_probs=84.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHH----HHHhcCC-----CEEEccCCCHHHHHh
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVK----ESRKLGF-----PILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~----~~~~~~~-----~~v~GD~t~~~~L~~ 600 (791)
++.|+|. |.+|..++..|. ..++..+...++++++|.++ +..+ ++.+... ..+. ..+ .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~---~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-----~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIA---SGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-----E 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH---hCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-----H
Confidence 5789999 999999999886 12332333556799999987 5321 1111100 0111 112 2
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHHH----HHHHHHh-CCCCcEEEEecChhhH---HHHHHCC---CCeEEc
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIEA----VQRLRLA-FPAIPIYARAQDMMHL---LDLKKAG---ATDAIL 658 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~~----~~~ar~l-~p~~~iiara~~~~~~---~~L~~~G---ad~Vi~ 658 (791)
..+++||.||++.+.. ..|..+ +..+++. +|+..+++ +.|+-+. -..+..| .++|+-
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~t~~~~k~sg~~p~~~vig 150 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTNALIALKNAPNLPPKNFTA 150 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHHHHHHHHHcCCCCHHHEEE
Confidence 3457899988887641 224443 4455566 47755444 5666543 2345556 456776
Q ss_pred CcHHHHHHHHHHHHhhcCCChHHH
Q 003861 659 ENAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 659 p~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
-..+-..|+-..+-+.+++++..+
T Consensus 151 ~t~LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 151 LTRLDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcCHHHc
Confidence 666666777777878888888766
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=86.27 E-value=3.4 Score=46.13 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=58.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhH----HHHHh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVV----KESRK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v----~~~~~--~~ 584 (791)
+.+|+|+|+|-.|..+++.|. ..|. +++++|.|. .++ +++++ ..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 97 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLA----------GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD 97 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence 458999999999999999998 6777 688889885 122 22332 22
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
+.++..+.+.++..+- ++++|.||.++++-+.-..+...+++.+
T Consensus 98 v~v~~~~~~i~~~~~~~~--~~~~DvVvd~~d~~~~r~~~n~~c~~~~ 143 (355)
T PRK05597 98 VKVTVSVRRLTWSNALDE--LRDADVILDGSDNFDTRHLASWAAARLG 143 (355)
T ss_pred cEEEEEEeecCHHHHHHH--HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2233445554433322 5789988888887655555666777765
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.25 E-value=1 Score=57.62 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=72.9
Q ss_pred CCCCEEEeCCChh-----------HHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~~-----------G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.-++|+|+|.|.. |..+++.|+ +.|++|+++|.||..+..-... ...++-++.+.+.+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~----------e~G~~vi~v~~np~~~~~d~~~-ad~~y~ep~~~e~l 74 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALK----------EEGYQVVLVNPNPATIMTDPAP-ADTVYFEPLTVEFV 74 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHH----------HcCCEEEEEeCCcchhhcCccc-CCeeEECCCCHHHH
Confidence 3468999999986 788999998 8999999999999765422222 22345567677766
Q ss_pred Hh-cCCCCCcEEEEEeCCH-HHHHHHHHH----HHHh-----CCCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 599 LS-AGITSPKAVMIMYTDK-KRTIEAVQR----LRLA-----FPAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 599 ~~-agi~~a~~viv~~~~d-~~n~~~~~~----ar~l-----~p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
.+ +.-++.|+++.+.+.+ ..|....+. +.+. +|+...+..+.|... .+.++++|...
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpv 143 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV 143 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 66 4556899888776544 334332111 2222 233334445555544 35678888763
|
|
| >PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom | Back alignment and domain information |
|---|
Probab=86.18 E-value=28 Score=39.45 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred HcCCChHHHHHHHHHhhcccCCcCCc------hhHHHHHHHHHHHHHHHHhhc-CChHHHHHhhhHHHHHHHHHHHHHHH
Q 003861 133 IARASPILGFFFAGIVLNQLGIIRNL------TDVKVLSEWGILFLLFEMGLE-LSLARLKALAKFAFGMGLTQVVLSTL 205 (791)
Q Consensus 133 rl~lP~ivg~ilaGillGp~gli~~~------~~l~~l~elgl~~lLF~~Gle-ldl~~Lk~~~~~~~~la~~~~llt~~ 205 (791)
.+++|.....++.=+++.-+|++++. +..+++..--...+|+-.|+. +|++++.+.......+-.+.++++..
T Consensus 268 ~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~ 347 (414)
T PF03390_consen 268 LIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAV 347 (414)
T ss_pred hcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 35999999999998888888887642 456677888888899999998 99999988765555444444444433
Q ss_pred HHHHhhCCCCCcchhhHHHHhhcccccccccCCHHHHHHHHHHhh
Q 003861 206 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALS 250 (791)
Q Consensus 206 ~~~~~~~p~~~~lG~~~~~~l~g~~~~~~~~~~~~~alllga~ls 250 (791)
+.+ .+..+++|- .+...|+.-|.+.+
T Consensus 348 ~~a------------~~vG~l~g~-------YPvEsAItaGLC~a 373 (414)
T PF03390_consen 348 IGA------------FLVGKLVGF-------YPVESAITAGLCMA 373 (414)
T ss_pred HHH------------HHHHHHhCC-------ChHHHHHHhhhccc
Confidence 333 334566762 34555555554554
|
They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane |
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=85.97 E-value=1.4 Score=50.70 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=68.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-c------cCCCHH-HHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-G------DASRPA-VLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-G------D~t~~~-~L~~agi 603 (791)
+++.|+|-|+.+..+++.++ +.|++++++|.+++.-.......-..+. + |.+|.+ +++-+.-
T Consensus 3 kkili~g~g~~~~~~~~aa~----------~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~ 72 (449)
T TIGR00514 3 DKILIANRGEIALRILRACK----------ELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEI 72 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHH----------HcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHH
Confidence 47899999999999999999 8999999998866532111111112222 2 334433 4444566
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCCcEEEEecChhh-HHHHHHCCCCe
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAF-----PAIPIYARAQDMMH-LLDLKKAGATD 655 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~-----p~~~iiara~~~~~-~~~L~~~Gad~ 655 (791)
+++|+++-..+-..+|...+..+.+.+ |+...+..++|... .+.+++.|+..
T Consensus 73 ~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~ 130 (449)
T TIGR00514 73 TGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPC 130 (449)
T ss_pred hCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCC
Confidence 789988776642223333455555543 22234444455443 44467778764
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >TIGR00783 ccs citrate carrier protein, CCS family | Back alignment and domain information |
|---|
Probab=85.96 E-value=23 Score=39.22 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHhhcccCCcCCc------hhHHHHHHHHHHHHHHHHhhc-CChHHHHHhh
Q 003861 135 RASPILGFFFAGIVLNQLGIIRNL------TDVKVLSEWGILFLLFEMGLE-LSLARLKALA 189 (791)
Q Consensus 135 ~lP~ivg~ilaGillGp~gli~~~------~~l~~l~elgl~~lLF~~Gle-ldl~~Lk~~~ 189 (791)
++|..+..++.|+++.-+|++++. ..-+++..--...+++-.|+. .|++++-+..
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 789999999999999999987643 222355555556677778986 8999998876
|
These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=85.94 E-value=3.5 Score=41.19 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=51.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|+|.|..|+.+++.|+ +.|++++ .+|.|++...+. -.|.+++ | ..+.+.+. ..+.+.+++
T Consensus 1 ~~~I~Gag~~g~~~~~~l~----------~~g~~vvgfid~~~~~~~~~-i~g~pvl-g---~~~~l~~~-~~~~~~~ii 64 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAE----------DSGWEIVGFLDDNPALQGTS-VDGLPVL-G---GDEDLLRY-PPDEVDLVV 64 (201)
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCEEEEEEcCCccccCcc-cCCccEE-C---CHHHHhhh-cccccEEEE
Confidence 4799999999999999998 6788877 667776543211 2466654 4 23344443 234577777
Q ss_pred EeCCHHHHHHHHHHHHHh
Q 003861 612 MYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l 629 (791)
+.++...-..+...+++.
T Consensus 65 ai~~~~~~~~i~~~l~~~ 82 (201)
T TIGR03570 65 AIGDNKLRRRLFEKLKAK 82 (201)
T ss_pred EcCCHHHHHHHHHHHHhC
Confidence 876544333444444443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.5 Score=46.15 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c----CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~----~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++++.+++..+...+ . ....+.+|.+|++.++++
T Consensus 9 k~~lItGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLL----------EAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 46777777 579999999998 889999999999887654432 1 244678999999877543
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 2346787766554
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.6 Score=46.03 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=51.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhh-HHH----HHhc---CCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSV-VKE----SRKL---GFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~-v~~----~~~~---~~~~v~GD~t~~~~L~~ 600 (791)
.+.++|.|. |.+|+.++++|. ++ |++|++++.+++. .++ +.+. ..+++.+|.+|++..++
T Consensus 8 ~~~vlItGas~giG~~la~~l~----------~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~ 77 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYL----------KNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPK 77 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHH----------hcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHH
Confidence 446888876 789999999997 66 5899999988775 333 3332 36788999999875432
Q ss_pred ----c-CCCCCcEEEEEe
Q 003861 601 ----A-GITSPKAVMIMY 613 (791)
Q Consensus 601 ----a-gi~~a~~viv~~ 613 (791)
+ .-.+.|.+|...
T Consensus 78 ~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHhcCCCCEEEEee
Confidence 1 114688777554
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.91 E-value=1.9 Score=45.84 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=55.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.| .|.+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAAL----------ERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 3567776 5899999999998 789999999999988766544 2466788999999887643
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
.....|++|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (275)
T PRK08263 74 HFGRLDIVVNNAG 86 (275)
T ss_pred HcCCCCEEEECCC
Confidence 1246787776654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.7 Score=45.56 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|.++++++.+++..+++.+ . ....+..|.+|++.++++
T Consensus 12 k~vlVtG~s~gIG~~la~~l~----------~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45666665 788999999998 889999999998887665432 2 245778999999876542
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|++|-+.+
T Consensus 82 ~~~~~~~~d~li~~ag 97 (255)
T PRK06113 82 ALSKLGKVDILVNNAG 97 (255)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1245677766543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=85.81 E-value=4.6 Score=45.35 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhH----HHHHh--c
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVV----KESRK--L 583 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v----~~~~~--~ 583 (791)
.+.+|+|+|+|..|..+++.|. ..|. +++++|.|. .++ +++++ .
T Consensus 40 ~~~~VliiG~GglG~~v~~~La----------~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np 109 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLA----------SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP 109 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC
Confidence 3568999999999999999998 7776 799999881 112 22222 2
Q ss_pred C--CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 584 G--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 584 ~--~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
+ +..+....+++ ...+. ++++|.|+-++++-+.-..+-..+++.+
T Consensus 110 ~v~i~~~~~~i~~~-~~~~~-~~~~DlVid~~Dn~~~r~~in~~~~~~~ 156 (370)
T PRK05600 110 DIRVNALRERLTAE-NAVEL-LNGVDLVLDGSDSFATKFLVADAAEITG 156 (370)
T ss_pred CCeeEEeeeecCHH-HHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2 23344444432 23322 5789999888888777666667777765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.4 Score=53.58 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=57.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.| .|.+|+.+++.|. +.|.+|+++|.+++..+.+.+. ....+.+|.+|++.++++-
T Consensus 423 k~vLVTGasggIG~~la~~L~----------~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLA----------AEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHH
Confidence 5688888 5999999999998 8899999999999887665443 5668899999998776531
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-+.+
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 236788877765
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=85.77 E-value=1 Score=53.47 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.+.|+|.|+.|+.+++..+ +.|++|+++|.|++... .......+.+|..|++.+.+..- ++|++
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~----------~lG~~Vi~ld~~~~apa--~~~AD~~~v~~~~D~~~l~~~a~-~~dvI 87 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAAS----------QMGIKVKVLDPLEDCPA--SSVAARHVVGSFDDRAAVREFAK-RCDVL 87 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCch--hhhCceeeeCCCCCHHHHHHHHH-HCCEE
Confidence 4557889999999999999998 89999999999987321 11123356688999998876543 36755
Q ss_pred EEEeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHH-HHHCCCCe
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLD-LKKAGATD 655 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~-L~~~Gad~ 655 (791)
.....+ .+......+.+.+ |....+..++|....+. |++.|+..
T Consensus 88 t~e~e~--v~~~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIpt 136 (577)
T PLN02948 88 TVEIEH--VDVDTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPL 136 (577)
T ss_pred EEecCC--CCHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCC
Confidence 333222 1122223344433 22233444445444444 56677653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=1.8 Score=45.67 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC---hhhHHHHHhc----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN---PSVVKESRKL----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d---~~~v~~~~~~----~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|++.+.+ ++..+++.+. ....+..|.+|++..+++
T Consensus 8 k~~lItGa~~s~GIG~aia~~la----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLH----------NAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHH
Confidence 46889997 489999999998 899999998654 3455555432 245778999999876542
Q ss_pred ------CCCCCcEEEEE
Q 003861 602 ------GITSPKAVMIM 612 (791)
Q Consensus 602 ------gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 78 ~~~~~~~~g~ld~lv~n 94 (257)
T PRK08594 78 FETIKEEVGVIHGVAHC 94 (257)
T ss_pred HHHHHHhCCCccEEEEC
Confidence 23456766643
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.6 Score=55.90 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCCCEEEeCCCh--hHHH---------HHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQ--MGQV---------LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~--~G~~---------la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
.+++++|+|.|. +|+. +++.|+ +.|++++++|.||+.+..-.+.....++-..+-++++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk----------~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~ 622 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALR----------EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVL 622 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHH----------HCCCEEEEEeCCccccccccchhhheeecCCCHHHHH
Confidence 457899999987 4544 589998 8999999999999985432222222333333445566
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEE-------EEecC-hhhHHHHHHCCCC
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIY-------ARAQD-MMHLLDLKKAGAT 654 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~ii-------ara~~-~~~~~~L~~~Gad 654 (791)
+-+.-++.|+++...+.+.. +.++..+.+.+ ++++ ..+.| ....+.|+++|+.
T Consensus 623 ~i~~~e~~dgVi~~~g~~~~-~~la~~le~~G--i~ilg~s~~ai~~~~DK~~~~~~L~~~GIp 683 (1066)
T PRK05294 623 EIIEKEKPKGVIVQFGGQTP-LKLAKALEAAG--VPILGTSPDAIDLAEDRERFSKLLEKLGIP 683 (1066)
T ss_pred HHHHHcCCCEEEEEeCchhH-HHHHHHHHHCC--CceeCCCHHHHHHhCCHHHHHHHHHHcCcC
Confidence 66677899999887776533 34444555543 3333 22333 3344557888876
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.73 E-value=1.7 Score=45.41 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH---HHh--cCCCEEEccCCCHHHHHhc--C-
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE---SRK--LGFPILYGDASRPAVLLSA--G- 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~---~~~--~~~~~v~GD~t~~~~L~~a--g- 602 (791)
+.++|.| .|.+|+.+++.|. +.|++|++++.+++..+. +++ ....++.+|.+|++.++++ +
T Consensus 8 ~~ilItGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLA----------EEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4677777 4789999999998 899999999988876422 222 2366789999999977653 1
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
....|.+|-+.+
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 135787777665
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=85.72 E-value=4.2 Score=46.04 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=67.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+.+|+|+|+|-.|..+++.|. ..|. .++++|.|.=....+. -++++. +..+
T Consensus 42 ~~~VlviG~GGlGs~va~~La----------~~Gvg~i~lvD~D~ve~sNL~---Rq~l~~---------~~di------ 93 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLA----------AAGVGTLGIVEFDVVDESNLQ---RQVIHG---------QSDV------ 93 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEECCCEecCcccc---cccccC---------hhcC------
Confidence 558999999999999999998 6777 5889997754332221 122211 1111
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh--HHHHHHCCCCeEEcCc-HHHHHHHHHHHHhhcCCC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH--LLDLKKAGATDAILEN-AETSLQLGSKLLKGFGVM 678 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~--~~~L~~~Gad~Vi~p~-~~~~~~la~~~l~~l~~~ 678 (791)
+. .....+...++++||+++|.+...+.+. ...+- .+.|.||.-. ....+.+.+.+....+.|
T Consensus 94 ----G~-~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~-~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 159 (392)
T PRK07878 94 ----GR-SKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELF-SQYDLILDGTDNFATRYLVNDAAVLAGKP 159 (392)
T ss_pred ----CC-hHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHH-hcCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 11 2233467788999999988766543332 22221 2688888652 233444444444444444
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=85.72 E-value=13 Score=40.71 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCCh--hhHHHHH----h----cCCCE-EEccCCCHHHH
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNP--SVVKESR----K----LGFPI-LYGDASRPAVL 598 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~--~~v~~~~----~----~~~~~-v~GD~t~~~~L 598 (791)
++.|+|. |.+|..++..|. ..|. +++++|.++ +..+..+ + .+... +.+ .+|.
T Consensus 2 kI~IiGatG~vG~~~a~~l~----------~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~--- 67 (309)
T cd05294 2 KVSIIGASGRVGSATALLLA----------KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL--- 67 (309)
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH---
Confidence 5889998 999999999997 5665 499999965 3321111 1 11111 222 1222
Q ss_pred HhcCCCCCcEEEEEeCC------H-----HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHH-HHCCCC--eEEc
Q 003861 599 LSAGITSPKAVMIMYTD------K-----KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDL-KKAGAT--DAIL 658 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~------d-----~~n~~----~~~~ar~l~p~~~iiara~~~~~--~~~L-~~~Gad--~Vi~ 658 (791)
+ .+.+||.++++.+. + ..|.. ++..+++.+|+..+++-. |+-+ ...+ +..|.. +|+-
T Consensus 68 ~--~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~-npvd~~t~~~~~~~g~~~~~viG 144 (309)
T cd05294 68 S--DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT-NPVDVMTYKALKESGFDKNRVFG 144 (309)
T ss_pred H--HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHHHhcCCCHHHEee
Confidence 2 27899999998862 1 12333 344456667775555544 4432 2222 333433 4554
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDVTF 684 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~~~ 684 (791)
- ..+-+.|+.+.+-+.+++++..++.
T Consensus 145 ~gt~LDs~R~~~~la~~l~v~~~~v~~ 171 (309)
T cd05294 145 LGTHLDSLRFKVAIAKHFNVHISEVHT 171 (309)
T ss_pred ccchHHHHHHHHHHHHHHCcChHHeEE
Confidence 4 2333566677777777888866543
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.7 Score=46.46 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=52.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.| .|.+|+.+++.|. ++|++|++.|.+++..++.. +.+ ...+..|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~ala~~La----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFA----------RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577776 5789999999998 89999999999987765443 233 45678999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~g~id~li~nA 91 (275)
T PRK05876 77 AFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567666544
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.69 E-value=6.3 Score=43.39 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHh-----cCCCEEEccCCC-HHHHHhcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-----LGFPILYGDASR-PAVLLSAGI 603 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~-~~~L~~agi 603 (791)
.+++.|+|.|..|+..++.+.+ ..+ .++.+++.++++.+++.+ .+..+.. ..| ++.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~---------~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~----- 190 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLA---------VRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYV--VNSADEAI----- 190 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHh---------cCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEE--eCCHHHHH-----
Confidence 4579999999999998887641 223 579999999999877654 2343332 233 2233
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh-----hhHHHHHHCCCCeEEcCcHH
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM-----MHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~-----~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+++|.|+.+|++.+- ... ..+.|+.+|.+.-.+. -..+.+++ ++.++.-..+
T Consensus 191 ~~aDiVi~aT~s~~p----~i~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~--a~~vvvD~~~ 247 (325)
T PRK08618 191 EEADIIVTVTNAKTP----VFS-EKLKKGVHINAVGSFMPDMQELPSEAIAR--ANKVVVESKE 247 (325)
T ss_pred hcCCEEEEccCCCCc----chH-HhcCCCcEEEecCCCCcccccCCHHHHhh--CCEEEECCHH
Confidence 689999999987632 223 5567787877653321 12234443 5666655543
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.5 Score=48.56 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
....+||+|.|-.|..+|..|. +.|.+|.|||.|-..
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~----------kdGRrVhVIERDl~E 80 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALA----------KDGRRVHVIERDLSE 80 (509)
T ss_pred CcccEEEECCcchHHHHHHHHh----------hCCcEEEEEeccccc
Confidence 4456999999999999999998 899999999998654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=1.1 Score=53.28 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh---------------------hhHHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---------------------SVVKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~---------------------~~v~~~~~~~~~~v 588 (791)
..++|+|+|.|..|...+..|. +.|++|+++|.++ ++.+.+++.|..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~----------~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~ 205 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLR----------RMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVR 205 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEE
Confidence 4568999999999999999998 7899999999642 34556777887766
Q ss_pred EccCC--C--HHHHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDAS--R--PAVLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t--~--~~~L~~agi~~a~~viv~~~~d 616 (791)
.+... | .+.+. ..+|+++.+++..
T Consensus 206 ~~~~~~~~~~~~~~~----~~~D~Vi~AtG~~ 233 (564)
T PRK12771 206 LGVRVGEDITLEQLE----GEFDAVFVAIGAQ 233 (564)
T ss_pred eCCEECCcCCHHHHH----hhCCEEEEeeCCC
Confidence 54222 1 22222 2589999999864
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=1.1 Score=49.15 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN 573 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d 573 (791)
.+.+.|+|+|++|+.+|+.++ ..|.+|+..|..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~----------~fgm~V~~~~~~ 180 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAE----------AFGMRVLIGQLP 180 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCC
Confidence 457999999999999999998 889999999865
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=4.1 Score=45.23 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=48.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHh-cCCCEE---------------EccCCCH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPIL---------------YGDASRP 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~-~~~~~v---------------~GD~t~~ 595 (791)
++.|+|+|++|+.+++.+. +..+.+++.+ |.+++....+.+ .|+... .-..+.+
T Consensus 3 kVaI~G~GrIGr~va~al~---------~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~ 73 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVA---------AQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIE 73 (341)
T ss_pred EEEEECCCHHHHHHHHHHh---------cCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChh
Confidence 5899999999999999987 2456676654 656655444322 343311 0011222
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
+.+ +++|.++.+++.+ .....+..+.+.
T Consensus 74 el~-----~~vDVVIdaT~~~-~~~e~a~~~~~a 101 (341)
T PRK04207 74 DLL-----EKADIVVDATPGG-VGAKNKELYEKA 101 (341)
T ss_pred Hhh-----ccCCEEEECCCch-hhHHHHHHHHHC
Confidence 222 4689999998875 333333344433
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=2.1 Score=49.15 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=58.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++.|+|.|..|...++.|. +.|++|.+.|.++.. .+.++ .|..+..|+-. ++.+ +..|.+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~----------~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~-~~~~-----~~~d~v 69 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFL----------ARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLN-DEWL-----LAADLI 69 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCC-HHHh-----cCCCEE
Confidence 47999999999999999998 899999999986543 23343 37777665332 2222 456766
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
|+..+-+.+|- ....+++.+ ++|+.+
T Consensus 70 v~spgi~~~~~-~~~~a~~~g--~~v~~~ 95 (438)
T PRK03806 70 VASPGIALAHP-SLSAAADAG--IEIVGD 95 (438)
T ss_pred EECCCCCCCCH-HHHHHHHCC--CeEEEH
Confidence 66554444444 455567654 566665
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.6 Score=52.74 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCCEEEeCCChh-----------HHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~-----------G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~ 599 (791)
-+.|+|+|.|.. |..+++.|+ +.|++|+++|.||+.+..-.+.... ++-++.+++.+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk----------e~G~~Vi~vd~np~t~~~~~~~aD~-~yi~p~~~e~v~ 91 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALK----------EEGYEVVLINSNPATIMTDPETADR-TYIAPMTPELVE 91 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHH----------HcCCEEEEEeCCcccccCChhhCcE-EEeCCCCHHHHH
Confidence 458999999984 778999998 8999999999999753221111122 344677777776
Q ss_pred h-cCCCCCcEEEEEeCCH-HHHHHHHHH----HHHhC-----CCCcEEEEecChhhH-HHHHHCCCCe
Q 003861 600 S-AGITSPKAVMIMYTDK-KRTIEAVQR----LRLAF-----PAIPIYARAQDMMHL-LDLKKAGATD 655 (791)
Q Consensus 600 ~-agi~~a~~viv~~~~d-~~n~~~~~~----ar~l~-----p~~~iiara~~~~~~-~~L~~~Gad~ 655 (791)
+ +.-++.|+++.+.+.+ ..|....+. +.+.+ ++...+..+.|.... +.+++.|...
T Consensus 92 ~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpv 159 (1102)
T PLN02735 92 QVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKT 159 (1102)
T ss_pred HHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 6 4667899998877665 344332211 12222 122233344454444 3467778763
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=85.43 E-value=2.4 Score=48.93 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=53.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---------------------HHHHHhcCCCEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 588 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---------------------v~~~~~~~~~~v 588 (791)
...+++|+|.|..|.+.|..|. +.|++|+++|.++.. .+.+++.|+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 201 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELA----------KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFR 201 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEE
Confidence 3568999999999999999998 789999999975311 234556778877
Q ss_pred EccCCCHH-HHHhcCCCCCcEEEEEeCC
Q 003861 589 YGDASRPA-VLLSAGITSPKAVMIMYTD 615 (791)
Q Consensus 589 ~GD~t~~~-~L~~agi~~a~~viv~~~~ 615 (791)
.+.....+ ++++. ..++|.++++++.
T Consensus 202 ~~~~v~~~v~~~~~-~~~yd~viiAtGa 228 (449)
T TIGR01316 202 MNFLVGKTATLEEL-FSQYDAVFIGTGA 228 (449)
T ss_pred eCCccCCcCCHHHH-HhhCCEEEEeCCC
Confidence 77543222 22221 2368999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 791 | ||||
| 3eyw_A | 413 | Crystal Structure Of The C-terminal Domain Of E. Co | 2e-13 |
| >pdb|3EYW|A Chain A, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc In Complex With Keff Length = 413 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 791 | |||
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 6e-39 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 1e-33 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 8e-28 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 3e-26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 2e-20 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 2e-20 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 4e-18 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 3e-14 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 5e-04 |
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Length = 413 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-39
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 530 GSE--PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587
GS V+I GFG+ GQ+ LL + G V D +P ++ RK G +
Sbjct: 1 GSHGMRVIIAGFGRFGQITGRLLLS----------SGVKMVVLDHDPDHIETLRKFGMKV 50
Query: 588 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 647
YGDA+R +L SAG + ++ D + ++ + ++ FP + I ARA+D+ H +
Sbjct: 51 FYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIR 110
Query: 648 LKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKDDQ 707
L++AG E E +L+ G L+ G+ + + R +E+ ++D
Sbjct: 111 LRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDT 170
Query: 708 E--FDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDA 751
+ + K +++I+ ++ S + G A
Sbjct: 171 KARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMA 216
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Length = 140 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 1e-33
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG 590
++VG+G++G +L L A P V + + + V E R+ G + G
Sbjct: 7 CNHALLVGYGRVGSLLGEKLLA----------SDIPLVVIETSRTRVDELRERGVRAVLG 56
Query: 591 DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 650
+A+ ++ A + K +++ + E V R P I I ARA + + +
Sbjct: 57 NAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITE 116
Query: 651 AGATDAILENAETSLQLGSKLLK 673
GA ++ E + + L
Sbjct: 117 RGANQVVMGEREIARTMLELLET 139
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 8e-28
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%)
Query: 493 LSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVNYEGSEPVVIVGFGQMGQVLANLLSA 552
L+ + G+W + +K D++ G V+I+G G++G + L A
Sbjct: 5 LNRLGHKIYQHSGKWLQETAAEKLNQRDQLINP----GHAQVLILGMGRIGTGAYDELRA 60
Query: 553 PLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 611
G + ++ ++ R G ++ GDA+ P K V++
Sbjct: 61 ---------RYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111
Query: 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 671
+ A+++L+ I A A+ L L ++G A +E +
Sbjct: 112 AMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHV 171
Query: 672 LKGFGVMSDDV 682
K +
Sbjct: 172 CKQLEPQFTSI 182
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 14/211 (6%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
VVI G+ + L G + +V K+ + G ++GD +
Sbjct: 12 VVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPT 59
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
R + L A + +AV++ TI + +R ++ I A A+ ++ L+ AGA
Sbjct: 60 RVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGA 119
Query: 654 TDAILENAETSLQLGSKLLKGFGV--MSDDVTFLRQLVRNSMEIQAQEVLSQKDDQEFDI 711
I + + + G+ + D + + I L + DI
Sbjct: 120 DQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADI 179
Query: 712 MKPLQVRVADIVEAEKTIPSTSNDDKLSRED 742
V + + ++ I D D
Sbjct: 180 HDVTGVIIIGVGRGDELIIDPPRDYSFRAGD 210
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Length = 153 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 14/144 (9%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVKESRKLGFPILY 589
++ G + L+ G P +++ ++
Sbjct: 6 FIVCGHSILAINTILQLNQ----------RGQNVTVISNLPEDDIKQLEQRLGDNADVIP 55
Query: 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 649
GD++ +VL AGI +A++ + + V + + D +L +K
Sbjct: 56 GDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK 115
Query: 650 KAGATDAILENAETSLQLGSKLLK 673
+ S L L
Sbjct: 116 MVHPDIILSPQLFGSEILARVLNG 139
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 58/337 (17%), Positives = 116/337 (34%), Gaps = 28/337 (8%)
Query: 411 IDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVF 470
+ IE++ + P VL + A I++ L + G G E G + + FV
Sbjct: 3 LVIEIIRKHLPRVLKVPATRILLLVLAVIIYG-TAGFHFIE----GESWTVSLYWTFVTI 57
Query: 471 SLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMVN 527
+ +G P + V ++ + + + R I+ + K+ +++
Sbjct: 58 A---TVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN---REQMKLMGLID 111
Query: 528 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI 587
S VVI G+ + L G + +V K+ + G
Sbjct: 112 VAKSRHVVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANF 159
Query: 588 LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLD 647
++GD +R + L A + +AV++ TI + +R ++ I A A+ ++
Sbjct: 160 VHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ 219
Query: 648 LKKAGATDAILENAETSLQLGSKLLKGF--GVMSDDVTFLRQLVRNSMEIQAQEVLSQKD 705
L+ AGA I + + + G+ + D + + I L
Sbjct: 220 LRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVS 279
Query: 706 DQEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSRED 742
+ DI V + + ++ I D D
Sbjct: 280 VLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGD 316
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 4e-18
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
+++G G L L+A G +A D + ++ GF + D +
Sbjct: 9 YIVIGSEAAGVGLVRELTA----------AGKKVLAVDKSKEKIELLEDEGFDAVIADPT 58
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
+ S + AV+I +D + ++ ++ LR + + R + ++AGA
Sbjct: 59 DESFYRSLDLEGVSAVLITGSDDEFNLKILKALR-SVSDVYAIVRVSSPKKKEEFEEAGA 117
Query: 654 TDAILENAETSLQLGSKLLKG 674
+L K+ K
Sbjct: 118 NLVVLVADAVKQAFMDKIKKM 138
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Length = 144 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-14
Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
++G G+ G + L +G +A D+N V + +A+
Sbjct: 9 FAVIGLGRFGGSIVKELHR----------MGHEVLAVDINEEKVNAYASYATHAVIANAT 58
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
LLS GI + + V++ + L I+ +AQ+ H L+K GA
Sbjct: 59 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGA 118
Query: 654 TDAILENAETSLQLGSKLLK 673
I + +++ L
Sbjct: 119 DRIIHPEKDMGVKIAQSLSD 138
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Length = 155 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRKLGFPILYGDA 592
+VI G G++G ++ANL S S G++V V D N + + + GDA
Sbjct: 22 IVIFGCGRLGSLIANLAS------SSGHSV----VVVDKNEYAFHRLNSEFSGFTVVGDA 71
Query: 593 SRPAVLLSAGI 603
+ L G+
Sbjct: 72 AEFETLKECGM 82
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 791 | |||
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 99.93 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.93 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 99.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 99.91 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 99.91 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 99.9 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 99.88 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.88 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 99.85 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 99.84 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 99.82 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 99.82 | |
| 1zcd_A | 388 | Na(+)/H(+) antiporter 1; membrane protein; 3.45A { | 99.78 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 99.73 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 99.69 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 99.67 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 99.66 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 99.66 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 99.35 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.13 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 97.46 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.31 | |
| 3naf_A | 798 | Calcium-activated potassium channel subunit alpha; | 97.28 | |
| 1vct_A | 205 | Hypothetical protein PH0236; helix rich, structura | 97.27 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 97.17 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.13 | |
| 3zux_A | 332 | Transporter, ASBTNM; transport protein, membrane p | 97.07 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.96 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.96 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.94 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.89 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.84 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.83 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.83 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.79 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.75 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.7 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.67 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.66 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.66 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.66 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.61 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.59 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.54 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.51 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.51 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.51 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 96.51 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.51 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.45 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.43 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 96.42 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.39 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.39 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.38 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.38 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.35 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.35 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.34 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.34 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.25 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.25 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.25 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.24 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.23 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.2 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.2 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.19 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.17 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.15 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.14 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.08 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.08 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.02 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.0 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 95.99 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.96 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.91 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.88 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 95.88 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 95.86 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 95.85 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.82 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 95.81 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.81 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.81 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.8 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.77 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.67 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.67 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 95.59 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.53 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.51 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.44 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.43 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 95.42 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 95.4 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.38 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.36 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 95.35 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.31 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 95.31 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.31 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.3 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 95.27 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.26 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.25 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 95.24 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 95.22 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.21 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.17 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.14 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.13 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 95.13 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.11 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.07 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.05 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 95.05 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.04 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.02 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.01 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 95.01 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 94.98 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.96 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 94.95 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 94.93 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 94.93 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.79 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.78 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.77 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 94.77 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 94.77 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.72 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.71 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 94.7 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.67 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 94.63 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 94.59 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 94.54 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.51 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.49 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.48 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.48 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.47 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.44 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 94.44 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.44 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 94.43 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 94.39 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.31 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.29 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 94.23 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 94.2 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.14 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.1 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.03 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.01 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 94.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.99 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 93.96 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 93.94 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.94 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.93 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 93.85 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 93.84 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 93.83 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 93.82 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.81 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 93.77 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 93.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 93.68 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.62 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.57 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.56 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 93.54 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.51 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 93.5 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 93.5 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.49 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 93.43 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.43 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 93.43 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 93.38 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 93.37 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.35 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 93.3 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 93.19 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 93.17 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 93.09 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 93.04 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 93.0 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.98 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 92.97 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 92.95 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 92.93 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 92.91 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 92.82 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 92.82 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 92.78 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.72 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 92.72 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 92.7 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 92.68 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 92.67 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 92.67 | |
| 3kto_A | 136 | Response regulator receiver protein; PSI-II,struct | 92.62 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.61 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.6 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 92.6 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 92.55 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 92.55 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 92.54 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 92.52 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.52 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 92.49 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 92.47 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 92.45 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.43 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 92.43 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 92.41 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 92.37 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 92.36 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 92.33 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 92.31 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 92.31 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 92.28 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 92.27 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.26 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 92.25 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 92.23 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 92.2 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 92.19 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 92.19 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 92.17 | |
| 3f6c_A | 134 | Positive transcription regulator EVGA; structural | 92.15 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.15 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 92.14 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 92.14 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 92.13 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 92.11 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 92.07 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 92.02 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.01 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 92.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 91.99 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 91.98 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 91.97 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 91.96 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 91.96 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 91.94 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 91.93 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 91.92 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 91.89 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 91.88 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 91.87 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.86 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 91.84 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.83 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.82 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 91.81 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.8 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 91.8 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 91.77 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.76 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 91.76 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 91.76 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 91.75 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 91.73 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 91.71 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 91.71 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 91.7 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 91.69 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 91.66 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 91.63 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 91.63 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 91.63 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 91.63 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 91.59 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.58 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 91.57 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 91.56 | |
| 4dad_A | 146 | Putative pilus assembly-related protein; response | 91.54 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 91.54 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 91.51 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 91.49 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 91.47 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 91.47 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 91.46 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 91.46 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 91.46 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 91.44 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 91.43 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 91.43 | |
| 3lua_A | 140 | Response regulator receiver protein; two-component | 91.41 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.41 | |
| 2rjn_A | 154 | Response regulator receiver:metal-dependent phosph | 91.4 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 91.4 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 91.39 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 91.39 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.38 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 91.38 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 91.38 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 91.38 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 91.37 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 91.35 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 91.35 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 91.34 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 91.34 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.31 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 91.3 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 91.3 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 91.29 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 91.29 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 91.27 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 91.27 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.25 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 91.25 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.25 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 91.21 | |
| 3hdg_A | 137 | Uncharacterized protein; two-component sensor acti | 91.2 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 91.18 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 91.17 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.17 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 91.17 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.16 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 91.15 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 91.15 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 91.11 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 91.1 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 91.1 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 91.09 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 91.09 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 91.08 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 91.07 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 91.06 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 91.03 | |
| 2qr3_A | 140 | Two-component system response regulator; structura | 91.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 90.99 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 90.36 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 90.99 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 90.97 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.95 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 90.95 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 90.93 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 90.93 | |
| 3gt7_A | 154 | Sensor protein; structural genomics, signal receiv | 90.92 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 90.9 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 90.89 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 90.87 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 90.85 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 90.8 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 90.79 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.77 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 90.75 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.75 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 90.74 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 90.73 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 90.71 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 90.7 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 90.7 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 90.7 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.7 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 90.68 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.66 | |
| 1dbw_A | 126 | Transcriptional regulatory protein FIXJ; doubly wo | 90.65 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 90.62 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 90.61 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.6 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 90.53 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 90.53 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 90.5 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 90.5 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 90.5 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 90.49 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 90.48 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 90.46 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 90.45 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 90.44 | |
| 2qv0_A | 143 | Protein MRKE; structural genomics, transcription, | 90.43 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 90.42 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.41 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.38 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 90.37 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 90.37 | |
| 2l0e_A | 33 | Sodium/hydrogen exchanger 1; transmembrane helix, | 90.36 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 90.36 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 90.33 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 90.33 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 90.33 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.32 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 90.27 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 90.27 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 90.26 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 90.26 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 90.25 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 90.25 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 90.23 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 90.17 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 90.17 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 90.11 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 90.11 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 90.08 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 90.07 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 90.05 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 90.01 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 89.97 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.96 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 89.96 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 89.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 89.93 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 89.93 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 89.91 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 89.91 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 89.91 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 89.88 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 89.87 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 89.87 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 89.81 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 89.79 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 89.78 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 89.78 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.76 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 89.76 | |
| 3hdv_A | 136 | Response regulator; PSI-II, structural genomics, P | 89.74 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 89.72 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 89.72 | |
| 2j48_A | 119 | Two-component sensor kinase; pseudo-receiver, circ | 89.71 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 89.69 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 89.68 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 89.67 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 89.66 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 89.6 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 89.58 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 89.58 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 89.58 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 89.52 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 89.51 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 89.51 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 89.49 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 89.48 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.39 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 89.38 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 89.37 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.37 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 89.34 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 89.34 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 89.31 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 89.3 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 89.28 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 89.27 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 89.27 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 89.26 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 89.24 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 89.24 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 89.23 | |
| 3hv2_A | 153 | Response regulator/HD domain protein; PSI-2, NYSGX | 89.23 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 89.21 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 89.19 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 89.18 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 89.17 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 89.15 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 89.14 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 89.09 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 89.07 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 89.04 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.03 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 89.01 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 89.01 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 88.98 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.88 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 88.86 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 88.84 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 88.82 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 88.81 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 88.72 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 88.69 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.69 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 88.66 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 88.66 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 88.65 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.64 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 88.64 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.63 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 88.49 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 88.45 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 88.41 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 88.38 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 88.38 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 88.34 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 88.28 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 88.27 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 88.25 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 88.25 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 88.24 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 88.24 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 88.19 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 88.13 |
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=249.30 Aligned_cols=205 Identities=18% Similarity=0.160 Sum_probs=174.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++|++|||+|++|+.+++.|. +.|+ |+++|.|+++++ +++.+.++++||++|+++|+++|+++||+++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~----------~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi 182 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELR----------GSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVI 182 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGG----------GSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred cCCEEEECCcHHHHHHHHHHH----------hCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence 679999999999999999998 7899 999999999999 9889999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 690 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~ 690 (791)
+++++|+.|+.+++.+|+++|+.+++||++++++.+.++++|+|.|++|+.+++.++++.+.. |+..+.++++++
T Consensus 183 ~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~ 257 (336)
T 1lnq_A 183 VDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDD-----GYEAMFVQDVLA 257 (336)
T ss_dssp ECCSSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHTTCSEEECHHHHHHHHHHHTSSC-----SHHHHHHHHHTS
T ss_pred EcCCccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChhHhHHHHHHHHHhC-----ccHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999998877 665555545656
Q ss_pred cccccceeeeecCCCc-hhhcccccCCcc------hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCC
Q 003861 691 NSMEIQAQEVLSQKDD-QEFDIMKPLQVR------VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGT 762 (791)
Q Consensus 691 ~~~~~~~~e~~~~~~~-~~~~~~~~~~i~------~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~ 762 (791)
..++..+.|+.++.+. ..++++++++.+ +..+.| +++....|++++++++||++.+.+.+..
T Consensus 258 ~~~~~~l~e~~v~~~s~~~Gk~l~el~l~~~~~~~ii~i~r----------~~~~~~~P~~~~~l~~gD~liv~g~~~~ 326 (336)
T 1lnq_A 258 EESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR----------GDELIIDPPRDYSFRAGDIILGIGKPEE 326 (336)
T ss_dssp SCSSCEEEEEECCSSCSSTTCBHHHHCHHHHHCCEEEEEEC----------SSCEESSCCTTCBCCSSCEEEEEECHHH
T ss_pred CcCCceEEEEEeCCCCCcCCCCHHHcccccccCeEEEEEEE----------CCEEEECcCCCcEEcCCCEEEEEECHHH
Confidence 5557888888876542 355666555433 222332 2334445999999999999999987654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=251.74 Aligned_cols=205 Identities=15% Similarity=0.189 Sum_probs=128.5
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..++|++|||+|++|+.+++.|. +.|++|++||.|+++++++++. +.++++||++++++|+++|+++|+
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~----------~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~ 194 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLE----------SRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAAR 194 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTT----------TTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCS
T ss_pred ccCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCC
Confidence 57899999999999999999998 8999999999999999999998 999999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 687 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~ 687 (791)
++++ +.+|+.|+.+++++|+++ +.+|+||++++++.+.|+++|||+|++|+.+++..+++.+.. |... .+
T Consensus 195 ~vi~-t~~D~~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~-----p~~~---~~ 264 (565)
T 4gx0_A 195 SIIA-NLSDPDNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATT-----CGAL---AH 264 (565)
T ss_dssp EEEE-CSCHHHHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC--------------
T ss_pred EEEE-eCCcHHHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcc-----cccc---cc
Confidence 9987 888999999999999999 899999999999999999999999999999999999999987 5443 12
Q ss_pred HHhcccccceeeeecCCCchhhcccccCCcc------hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccC
Q 003861 688 LVRNSMEIQAQEVLSQKDDQEFDIMKPLQVR------VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNG 761 (791)
Q Consensus 688 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~------~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~ 761 (791)
.+...++..+.|+.++.....++++++++.+ +..+.| +++.. .|++++++++||.+++.|.+.
T Consensus 265 ~~~~~~~~~l~e~~v~~s~l~G~~l~el~~~~~~~~~vi~i~r----------~g~~~-~p~~~~~l~~GD~L~v~g~~~ 333 (565)
T 4gx0_A 265 ILDSFGNLQIAELPVHGTPFAGKTIGESGIRQRTGLSIIGVWE----------RGSLT-TPQRETVLTEQSLLVLAGTKS 333 (565)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCceEEEEEECCCccCCCCHHHcCcchhcCCEEEEEEE----------CCEEe-CCCCCcEeCCCCEEEEEeCHH
Confidence 2234567778888776222355555554332 223332 34455 899999999999999999887
Q ss_pred CCC
Q 003861 762 TNN 764 (791)
Q Consensus 762 ~~~ 764 (791)
.-.
T Consensus 334 ~l~ 336 (565)
T 4gx0_A 334 QLA 336 (565)
T ss_dssp ---
T ss_pred HHH
Confidence 655
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=226.22 Aligned_cols=208 Identities=18% Similarity=0.154 Sum_probs=170.6
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+.++|++|||+|++|+.+++.|. +.|+ |+++|.|+++++.++ .+..+++||++|+++|+++++++||.
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~----------~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~ 74 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELR----------GSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARA 74 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHST----------TSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSE
T ss_pred CCCCEEEEECCChHHHHHHHHHH----------hCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcE
Confidence 45789999999999999999998 7899 999999999999888 88999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQL 688 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~ 688 (791)
+++++++|+.|+.+++.+|+++|+++|+++++++++.+.++++|+|.|++|+.++|..+++.+.. |...+.++++
T Consensus 75 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~-----~~~~~~~~~~ 149 (234)
T 2aef_A 75 VIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDD-----GYEAMFVQDV 149 (234)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHTSSC-----SHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHCCCCEEECHHHHHHHHHHHHHcC-----ccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877 6655555355
Q ss_pred HhcccccceeeeecCCCc-hhhcccccCCcc------hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccC
Q 003861 689 VRNSMEIQAQEVLSQKDD-QEFDIMKPLQVR------VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNG 761 (791)
Q Consensus 689 ~~~~~~~~~~e~~~~~~~-~~~~~~~~~~i~------~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~ 761 (791)
++..++..+.|+.++... ..++++++++.+ +..+.| +++....|++++++++||.++++|...
T Consensus 150 ~~~~~~~~~~e~~V~~~s~~~Gk~l~el~~~~~~~~~vi~i~R----------~~~~~~~p~~~~~l~~GD~l~v~g~~~ 219 (234)
T 2aef_A 150 LAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR----------GDELIIDPPRDYSFRAGDIILGIGKPE 219 (234)
T ss_dssp HC---CCEEEEEECCTTBTTTTCBHHHHCHHHHHCCEEEEEEE----------TTEEEESCCTTCBCCTTCEEEEEECHH
T ss_pred hcCCCCceEEEEEECCCCccCCCCHHHhhhhhhcCeEEEEEEE----------CCeEEeCCCCCCEECCCCEEEEEECHH
Confidence 554446777788776542 345555554332 223333 233334599999999999999999876
Q ss_pred CC
Q 003861 762 TN 763 (791)
Q Consensus 762 ~~ 763 (791)
.-
T Consensus 220 ~l 221 (234)
T 2aef_A 220 EI 221 (234)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=202.28 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=130.3
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+.++|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++.|.++++||++++++|+++|+++||.
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~----------~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLL----------ASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred cCCCCEEEECcCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCE
Confidence 57899999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+|+++++|+.|..++..+|+++|+.+|++|++++++.+.|+++|+|.|++|+.+++.++++.+.+
T Consensus 75 vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~l~~ 139 (140)
T 3fwz_A 75 LILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLET 139 (140)
T ss_dssp EEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHHC
T ss_pred EEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999988764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=235.93 Aligned_cols=158 Identities=28% Similarity=0.459 Sum_probs=149.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++||+|||+|++|+.+++.|. +.|++|++||.|+++++.+++.|.++++||++++++|+++|+++|+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~----------~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLL----------SSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEE
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLV 689 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~ 689 (791)
|+++++|+.|+.++..+|+++|+++|+||++++++...|+++|||.||.|+.++|.+++++++..+|+++..++...+.+
T Consensus 73 iv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~~~~a~~la~~~L~~lg~~~~~~~~~~~~~ 152 (413)
T 3l9w_A 73 INAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVF 152 (413)
T ss_dssp EECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTTCSSCEETTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hcccccce
Q 003861 690 RNSMEIQA 697 (791)
Q Consensus 690 ~~~~~~~~ 697 (791)
|..++..+
T Consensus 153 r~~~~~~~ 160 (413)
T 3l9w_A 153 RRFNIQMV 160 (413)
T ss_dssp HHHHHHHH
T ss_pred HHhHHHHH
Confidence 76544333
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-24 Score=218.94 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=168.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|||+|++|+.+++.|. +.|++|+++|.|+++++++.+ .+..+++||++++++|+++++++||.+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~----------~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 71 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSML----------SRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVI 71 (218)
T ss_dssp CEEEECCHHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence 6899999999999999998 789999999999999998764 68999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHhc
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRN 691 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~~ 691 (791)
++++|+.|..++..+|+.+|..++++|++++++.+.|+++|+|.|++|+.+++..+++.+.. |+..+.+ ..
T Consensus 72 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~~~~l~~~~~~-----~~~~~~~----~~ 142 (218)
T 3l4b_C 72 LTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLTTLITNTVEALIFP-----DEFSSII----PL 142 (218)
T ss_dssp CCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHHHHHHHHHHHHHCT-----TSCEECS----CC
T ss_pred ecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHHHHHHHHHHHHhcc-----CCceEEE----Ee
Confidence 99999999999999999999999999999999999999999999999999999999988866 4333322 23
Q ss_pred ccccceeeeecCCCc-hhhcccccCCcc----hhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCCC
Q 003861 692 SMEIQAQEVLSQKDD-QEFDIMKPLQVR----VADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTN 763 (791)
Q Consensus 692 ~~~~~~~e~~~~~~~-~~~~~~~~~~i~----~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~~ 763 (791)
.++..+.|+.++.+. +.++++++++.+ +..+.| +++.. .|++++++++||.++..|.+..-
T Consensus 143 ~~~~~~~e~~v~~~s~~~gk~l~el~~~~~~~i~~i~R----------~~~~~-~p~~~~~l~~gD~l~v~g~~~~~ 208 (218)
T 3l4b_C 143 EQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVR----------GGVLV-VPRGDTEILSGDKLYVIVSAEAK 208 (218)
T ss_dssp STTEEEEEEECCTTCSSTTCBTTTSCCCTTEEEEEEEE----------SSCEE-CCCTTCBCCTTEEEEEEEEGGGH
T ss_pred CCCcEEEEEEECCCCcccCCCHHHCCCCCCcEEEEEEE----------CCEEE-cCCCCCEECCCCEEEEEECHHHH
Confidence 334788888876543 456666665543 223333 23333 49999999999999999987653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=235.23 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=161.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
|++|||+|++|+.+|+.|. ++|++|++||.|+++++++.+ .+..+++||++++++|++||+++||++|+
T Consensus 5 ~iiI~G~G~vG~~la~~L~----------~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 5 KIIILGAGQVGGTLAENLV----------GENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEECCSHHHHHHHHHTC----------STTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 7999999999999999998 899999999999999999875 69999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH------HCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK------KAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFL 685 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~------~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l 685 (791)
+|++|+.|+.+|+.||++||..+++||++++++.+..+ ..|+|.+|+|+.+++..+.+.+.. |+..+..
T Consensus 75 ~t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~-----p~~~~~~ 149 (461)
T 4g65_A 75 VTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQY-----PGALQVV 149 (461)
T ss_dssp CCSCHHHHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTS-----TTCSEEE
T ss_pred EcCChHHHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccC-----CCeEEEE
Confidence 99999999999999999999999999999998753322 379999999999998888877765 4332221
Q ss_pred HHHHhcccccceeeeecCCCc-hhhcccc-------cCCcchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeee
Q 003861 686 RQLVRNSMEIQAQEVLSQKDD-QEFDIMK-------PLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYC 757 (791)
Q Consensus 686 ~~~~~~~~~~~~~e~~~~~~~-~~~~~~~-------~~~i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~ 757 (791)
. -.++..++.++..+.+. ..++.++ +.+.++..+.| +.-...|++++.+++||.+.+.
T Consensus 150 ~---f~~g~~~l~e~~v~~~s~l~g~~l~~l~~~~p~~~~~I~aI~R-----------~g~~iiP~g~t~i~~gD~v~~i 215 (461)
T 4g65_A 150 S---FAEEKVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFR-----------QGRPIRPQGTTIIEADDEVFFV 215 (461)
T ss_dssp E---ETTTTEEEEEEECCTTSSSTTCBHHHHHHTSTTSCEEEEEEEE-----------TTEEECCCTTCBCCTTCEEEEE
T ss_pred E---eccceEEEEEEEecCCCeecCCcHHHHHhhCCCCceEEEEEEE-----------CCeeccCCCCceecCCCEEEEE
Confidence 0 12466788888776433 1222222 12233333333 2334779999999999999998
Q ss_pred eccCCCC
Q 003861 758 ELNGTNN 764 (791)
Q Consensus 758 ~~~~~~~ 764 (791)
+....-+
T Consensus 216 ~~~~~i~ 222 (461)
T 4g65_A 216 AASNHIR 222 (461)
T ss_dssp EETTTHH
T ss_pred eccchHH
Confidence 8776544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=243.41 Aligned_cols=198 Identities=19% Similarity=0.228 Sum_probs=123.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+|++|||+|++|+.+++.|. +.|++|++||.|+++++++. ++++||++|+++|+++|+++||++|+
T Consensus 349 ~~viIiG~G~~G~~la~~L~----------~~g~~v~vid~d~~~~~~~~----~~i~gD~t~~~~L~~agi~~ad~vi~ 414 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLD----------RKPVPFILIDRQESPVCNDH----VVVYGDATVGQTLRQAGIDRASGIIV 414 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSCCSSCCSS----CEEESCSSSSTHHHHHTTTSCSEEEE
T ss_pred CCEEEECCCHHHHHHHHHHH----------HCCCCEEEEECChHHHhhcC----CEEEeCCCCHHHHHhcCccccCEEEE
Confidence 89999999999999999998 89999999999999987653 89999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHhc
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRN 691 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~~~~~ 691 (791)
++++|+.|+.+++.+|+++|+++|+||++++++.+.++++|||+||+|+.+++.++++.+.. ++..+.
T Consensus 415 ~~~~d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~~~~i~~~~~~-----~~~~~~------- 482 (565)
T 4gx0_A 415 TTNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEH-----KESAFL------- 482 (565)
T ss_dssp CCSCHHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHHTCSEEEEHHHHHHHHHHHHHHC-----C------------
T ss_pred ECCCchHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEccchHHHHHHHHHhcc-----hhhhhh-------
Confidence 99999999999999999999999999999999999999999999999999999999998875 433221
Q ss_pred ccccceeeeecCCCchhhcccccCCc------chhhhhhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccCCCC
Q 003861 692 SMEIQAQEVLSQKDDQEFDIMKPLQV------RVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNN 764 (791)
Q Consensus 692 ~~~~~~~e~~~~~~~~~~~~~~~~~i------~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~~~~ 764 (791)
.+++...++..+ ....+++++++++ ++..++|++ +++...-|++++++++||.++..|.+..-+
T Consensus 483 ~~~~~~~~v~~~-s~~~Gk~l~el~l~~~~~~~v~aI~R~~--------~~~~~~~p~~~~~l~~GD~liv~g~~~~i~ 552 (565)
T 4gx0_A 483 SEGMAVFRRPLP-PAMAGKTIAETRLRPLTGCSIVAIEAPD--------RADILISPPPETILAEGARLILIGTSEQEK 552 (565)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hcCeEEEEEcCC-CCcCCCCHHHcchhhhcCCEEEEEEeCC--------CCceEECcCCCCEECCCCEEEEEECHHHHH
Confidence 223444444433 2235666666543 344444431 134444599999999999999999876554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=178.35 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=127.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+|++|+|+|++|+.+++.|. +.|++|+++|.|+++++.+++.+.++++||++|++.|++++++++|.++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~----------~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELT----------AAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 468999999999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+++++++.|..++..+|+.+ ..+++++++++++.+.|+++|+|.|++|+.++|.++++.+.+
T Consensus 76 ~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~i~~ 137 (141)
T 3llv_A 76 ITGSDDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMDKIKK 137 (141)
T ss_dssp ECCSCHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHcCCCEEECHHHHHHHHHHHHHhC
Confidence 99999999999999999999 789999999999999999999999999999999999999887
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=179.95 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=123.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHH---hcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR---KLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~---~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++|++|||+|++|+.+++.|. +.|++|+++|.| +++.+.+. +.|..+++||++|+++|+++++++|
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~----------~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a 72 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLN----------QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhC
Confidence 579999999999999999998 789999999998 46555543 4589999999999999999999999
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
|.+++++++|+.|..+++.+|+++|+.+|+++++++++.+.|+++|+|.|+.|+.+++..+++.+..
T Consensus 73 d~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~~~~~ 139 (153)
T 1id1_A 73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNG 139 (153)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTT
T ss_pred CEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEcHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999987764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=212.66 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=157.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..++++|+|.|+.|..+|+.|. .+++|.+||.|+++++.+.+ .+..+++||+||+++|+++|++++|
T Consensus 234 ~~~~v~I~GgG~ig~~lA~~L~-----------~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D 302 (461)
T 4g65_A 234 PYRRIMIVGGGNIGASLAKRLE-----------QTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVD 302 (461)
T ss_dssp CCCEEEEECCSHHHHHHHHHHT-----------TTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCS
T ss_pred cccEEEEEcchHHHHHHHHHhh-----------hcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhc
Confidence 4568999999999999999994 56899999999999999876 4688999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 687 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~ 687 (791)
+++++|+||+.|+.+++.||+++.+ +++|+++++++.+.+++.|+|.+++|+..++..+.+.+.+ ++..+. ..
T Consensus 303 ~~ia~T~~De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~~-----~~v~~v-~~ 375 (461)
T 4g65_A 303 VFIALTNEDETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVRR-----ADIVNV-SS 375 (461)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHHH-----TTCCCE-EE
T ss_pred EEEEcccCcHHHHHHHHHHHHcCCc-cccccccccchhhhhhccccceeeCHHHHHHHHHHHHhhc-----cccceE-EE
Confidence 9999999999999999999999865 8999999999999999999999999999999999998887 322111 00
Q ss_pred HHhcccccceeeeecCCC----chhhcccccCC----cchhhhhhccCCCCCCCCccccccCCCCCCCCCCCCcee-eee
Q 003861 688 LVRNSMEIQAQEVLSQKD----DQEFDIMKPLQ----VRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVL-YCE 758 (791)
Q Consensus 688 ~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~----i~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l-~~~ 758 (791)
+ .+++..+.|+..... ...++.+++++ .++..+.| +++ ...|.+++.+|+||+|. ||.
T Consensus 376 l--~~g~ae~iE~~~~~~~~~S~~vGk~l~dl~lp~g~~I~aI~R----------~~~-~iiP~gdt~i~~gD~vivf~~ 442 (461)
T 4g65_A 376 L--RRGAAEAIEAVAHGDESNSKVVGRAVGDIKLPPGTTIGAIVR----------GEE-VLIAHDRTVIEQDDHVVMFLV 442 (461)
T ss_dssp C--GGGSCEEEEEECCSCGGGCSSTTSBGGGSCCCTTEEEEEEEE----------TTE-EEECCTTCBCCTTCEEEEEES
T ss_pred e--cCCceEEEEEEEecCCCCCccCCcCHHHCCCCCCcEEEEEEE----------CCE-EEcCCCCCEECCCCEEEEEEc
Confidence 0 123344455544211 12344444443 23333444 233 35699999999999975 566
Q ss_pred ccC
Q 003861 759 LNG 761 (791)
Q Consensus 759 ~~~ 761 (791)
...
T Consensus 443 ~~~ 445 (461)
T 4g65_A 443 DKK 445 (461)
T ss_dssp CGG
T ss_pred CHH
Confidence 543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=179.57 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=129.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~ 607 (791)
..+|++|||+|++|+.+++.|. +. |++|+++|.|+++++.+++.|..+++||++++++|+++ +++++|
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~----------~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELR----------ARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHH----------HHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 3569999999999999999998 78 99999999999999999999999999999999999999 999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcC
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFG 676 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~ 676 (791)
.+|+++++++.|..++..+|+.+|+.+|+++++++++.+.+++.|+|.++.|+.++|..+++.+++.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~~ 176 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQLE 176 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988544
|
| >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-20 Score=200.10 Aligned_cols=295 Identities=19% Similarity=0.181 Sum_probs=209.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHH----HHhhh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHhhccccc
Q 003861 159 TDVKVLSEWGILFLLFEMGLELSLARL----KALAK--FAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD 232 (791)
Q Consensus 159 ~~l~~l~elgl~~lLF~~Gleldl~~L----k~~~~--~~~~la~~~~llt~~~~~~~~~p~~~~lG~~~~~~l~g~~~~ 232 (791)
+....+.+-.+.+++|.+|+|+|.+.+ ++.+| .....+..++++|+++. +.++
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy-----------------~~~~---- 116 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY-----------------LAFN---- 116 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH-----------------GGGC----
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH-----------------HHHh----
Confidence 456788999999999999999998876 55555 36777777777776542 2333
Q ss_pred ccccCCHHHHHHHHHHhhhccHHHHHHHHHhcCC-CCChhHHHHHHHHHHhHHHHHHHHHHHHHHhhccCcchHHHHHHH
Q 003861 233 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKE 311 (791)
Q Consensus 233 ~~~~~~~~~alllga~ls~TS~avv~~lL~e~~~-~~~~~g~l~l~~~~l~Di~~v~~l~i~~~l~~~~~~~~~~~l~~~ 311 (791)
.+..++..-+.+.+.||.++.+.++...+. .++..+..+++.+++||+.++++++++.. ++.+.. .+.
T Consensus 117 ----~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~~~-~l~-- 185 (388)
T 1zcd_A 117 ----YADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLSMA-SLG-- 185 (388)
T ss_dssp ----CSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCCHH-HHH--
T ss_pred ----cCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCccHH-HHH--
Confidence 233346677788888999999999998765 45556699999999999999999988632 122221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhHhcCCc-----cchh
Q 003861 312 SLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRT 386 (791)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~l~~~i~~~~~~e~~~~~~l~~~~~~~~la~~lGls~~LgAflaGl~l~~~-----~~~~ 386 (791)
..+.. +...+.+ ++ .+.+.......+ .+...+.++..|+|+.+|+|++|++++.. +..+
T Consensus 186 --~~~~~-----~~~~~~l----~r---~~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~ 249 (388)
T 1zcd_A 186 --VAAVA-----IAVLAVL----NL---CGARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAK 249 (388)
T ss_dssp --HHHHH-----HHHHHHH----HH---TTCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHH
T ss_pred --HHHHH-----HHHHHHH----HH---hcchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHH
Confidence 11111 1111111 21 122222222222 22345677999999999999999999985 3468
Q ss_pred HHHHhhhchH-hHHHHHH-HHHHcccCChH---HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhc----------CCCHHH
Q 003861 387 QIEADIRPFR-GLLLGLF-FVTTGSSIDIE---LLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQE 451 (791)
Q Consensus 387 ~i~~~l~~~~-~~f~~lF-Fv~vG~~l~l~---~l~~~~~~~l~l~l~~ll~K~l~~~~~~~~~----------~~~~r~ 451 (791)
++++.++++. .+++|+| |+..|.++|.. .+.+. ..+.+++..+++|+++++..++.. |.+|++
T Consensus 250 ~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 250 RLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 8999999995 6899999 99999999974 33221 122445566899988855544443 899999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHcCC--cchhhhhHHHHHHHHHHHhHhHHHH
Q 003861 452 SVRIGLLLSQGGEFAFVVFSLANRLGV--LPLELNKLLIIVVVLSMALTPLLNE 503 (791)
Q Consensus 452 ~~~~g~~l~~rG~~~lvla~~a~~~g~--i~~~~~~~iv~~vvlt~iltpll~~ 503 (791)
...+|+.++.++++++++++.+.+.+. ..++.+..++.++++|.+++|++.+
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~ 381 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLR 381 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGT
T ss_pred HHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998775 3455677888888889999988754
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=195.52 Aligned_cols=217 Identities=14% Similarity=0.093 Sum_probs=159.5
Q ss_pred cCCCCEEEeCCChhHHH--HHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHh---cCCCEEEccCCCHHHHHhc
Q 003861 529 EGSEPVVIVGFGQMGQV--LANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRK---LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~--la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~---~~~~~v~GD~t~~~~L~~a 601 (791)
..++|+||||+++.++. +.++|.. -++...+.++|+++.++. .++...+ .++.+++||++++++|++|
T Consensus 51 ~~k~HIIIcG~~~~~~v~~fL~El~~-----~~~~~~~~~IVIL~~~~p~~eLe~lL~~~~~~V~fI~Gdat~~e~L~RA 125 (798)
T 3naf_A 51 SGRKHIVVCGHITLESVSNFLKDFLH-----KDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARV 125 (798)
T ss_dssp CSSEEEEEESCCCHHHHHHHHHHHTC-----TTSCCCCEEEEEEESSCCCHHHHHHHHHTTTTEEEEECCSSSHHHHHHT
T ss_pred cCCCeEEEEcCCCHHHHHHHHHHHHh-----hcccccCCcEEEEeCCCCcHHHHHHhhcccCceEEEEcCCCCHHHHHhc
Confidence 46899999999987664 5555541 011123568999987532 2333332 5788999999999999999
Q ss_pred CCCCCcEEEEEeC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH------CCCCeEEcCcHHHHHHH
Q 003861 602 GITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQL 667 (791)
Q Consensus 602 gi~~a~~viv~~~--------~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~------~Gad~Vi~p~~~~~~~l 667 (791)
|+++|+++++..+ +|.+|+.+++++|+++|+++|+|++.++++.+.|++ +|||.||+|+...+..|
T Consensus 126 gI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~i~IIa~~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LL 205 (798)
T 3naf_A 126 KIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFI 205 (798)
T ss_dssp TGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTTCCEEEEESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHH
T ss_pred CHhhCCEEEEECCccccCCccchHHHHHHHHHHHHHCCCCCEEEEECCHhHHHHHHhcccchhcCCCEEEehHHHHHHHH
Confidence 9999999999874 588999999999999999999999999999999987 79999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhccc------ccc-----------eeeeecCCCchhhccc--------ccCCcchhhh
Q 003861 668 GSKLLKGFGVMSDDVTFLRQLVRNSM------EIQ-----------AQEVLSQKDDQEFDIM--------KPLQVRVADI 722 (791)
Q Consensus 668 a~~~l~~l~~~~~~~~~l~~~~~~~~------~~~-----------~~e~~~~~~~~~~~~~--------~~~~i~~~~l 722 (791)
|+.++. |+...++.+++.... +.| +..+..++. ..+++. +..++.+..+
T Consensus 206 Aqs~l~-----PGls~~i~~LLs~~~~~~~~~~~Wi~eY~~g~g~Eiy~v~l~s~-~~G~Tf~ea~~~lr~k~gaiLIGI 279 (798)
T 3naf_A 206 AQSCLA-----QGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSA-FVGLSFPTVCELCFVKLKLLMIAI 279 (798)
T ss_dssp HHHHHS-----TTHHHHHHHHHSCCCCCCCCSCSHHHHHHHHHTBCCEEEECCGG-GTTCBHHHHHHHHHHHTCCCEEEE
T ss_pred HHHhcC-----CCHHHHHHHHhccccccccchhHHHHHHhcccCcEEEEEeCCcc-cCCCCHHHHHHHHHHhCCEEEEEE
Confidence 999998 999999999886521 112 222222211 112221 2334444444
Q ss_pred hhccCCCCCCCCccccccCCCCCCCCCCCCceeeeeccC
Q 003861 723 VEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNG 761 (791)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~~ 761 (791)
++...+ ++++...-|++++++++||.+.+.+.+.
T Consensus 280 ~r~~~~-----~~g~iilNP~~d~~L~~GD~LivIa~~~ 313 (798)
T 3naf_A 280 EYKSAN-----RESRILINPGNHLKIQEGTLGFFIASDA 313 (798)
T ss_dssp EEECSS-----SCEEEEESCCTTCBCCTTCEEEECCBTT
T ss_pred EeccCC-----CCCeEEECCCCCCEECCCCEEEEEeCCH
Confidence 443211 1345777799999999999998888653
|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=188.57 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=154.6
Q ss_pred CCCCEEEeCCChhHHH--HHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHHHH-H--hcCCCEEEccCCCHHHHHhcC
Q 003861 530 GSEPVVIVGFGQMGQV--LANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKES-R--KLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~--la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~~~-~--~~~~~~v~GD~t~~~~L~~ag 602 (791)
.++|+||||+++.++. ..+++.. -++.....+||+++.++ +.++.+ + ..++.+++||++++++|++||
T Consensus 2 gk~HIIVcG~~~~~sV~~FL~Ef~h-----~d~~~~~~~VVIL~~~~P~~ELe~lL~~~~~~V~fI~Gdat~~edL~RA~ 76 (726)
T 3mt5_A 2 GRKHIVVCGHITLESVSNFLKDFLH-----KDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVK 76 (726)
T ss_dssp --CEEEEEESCCHHHHHHHHHHHHH-----HCTTTTTCEEEEECSSCCCHHHHTTHHHHCSSEEEECCCTTSHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHh-----ccccccCCcEEEEeCCCCCHHHHHHHHhhcCceEEEEeCCCCHHHHHhcC
Confidence 4789999999998886 3455431 01123455899998754 233333 2 267889999999999999999
Q ss_pred CCCCcEEEEEeC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH------CCCCeEEcCcHHHHHHHH
Q 003861 603 ITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQLG 668 (791)
Q Consensus 603 i~~a~~viv~~~--------~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~------~Gad~Vi~p~~~~~~~la 668 (791)
+++|+++++..+ +|.+|+.+++++|+++|+++|+|++.++++.+.|++ +|||.||.|++..+..||
T Consensus 77 I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~i~IVA~~~~~en~~~L~ri~sw~~AGAd~VI~~~el~g~LLA 156 (726)
T 3mt5_A 77 IESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIA 156 (726)
T ss_dssp GGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTTSCEEEEESCHHHHGGGGGSTTCCTTTTCEEEEHHHHHHHHHH
T ss_pred hhhcCEEEEEcCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEECCHHHHHHHhhccchhhcCCCEEEehHHHHHHHHH
Confidence 999999999764 589999999999999999999999999999999984 899999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHhccc------ccce-----------eeeecCCCchhhcc--------cccCCcchhhhh
Q 003861 669 SKLLKGFGVMSDDVTFLRQLVRNSM------EIQA-----------QEVLSQKDDQEFDI--------MKPLQVRVADIV 723 (791)
Q Consensus 669 ~~~l~~l~~~~~~~~~l~~~~~~~~------~~~~-----------~e~~~~~~~~~~~~--------~~~~~i~~~~l~ 723 (791)
+.++. |+...++.+++.... +.|+ .++..++. ..+++ .+..++.+..++
T Consensus 157 qs~l~-----PGlst~i~~LLs~~s~~~~~~~~wi~EY~~g~g~EiY~v~l~s~-~~G~Tf~ea~~~lr~k~gaiLIGI~ 230 (726)
T 3mt5_A 157 QSCLA-----QGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSA-FVGLSFPTVCELCFVKLKLLMIAIE 230 (726)
T ss_dssp HHHHS-----TTHHHHHHTTTSCCCCCCCCSSSHHHHHHHHHTCEEEEEECCGG-GTTSBHHHHHHHHHHTTCCEEEEEE
T ss_pred HHhcC-----CCHHHHHHHHHhcccccccchhHHHHHHhccCCceEEEEeCCcc-cCCCCHHHHHHHHHhhCCEEEEEEE
Confidence 99998 999999988876421 1222 22222211 11221 123344444444
Q ss_pred hccCCCCCCCCccccccCCCCCCCCCCCCceeeeecc
Q 003861 724 EAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELN 760 (791)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~ 760 (791)
+...+ .+++...-|++++++++||.+.+.+.+
T Consensus 231 r~~~~-----~~g~iilNP~~d~~I~~GD~LiVIa~s 262 (726)
T 3mt5_A 231 YKSAN-----RESRILINPGNHLKIQEGTLGFFIASD 262 (726)
T ss_dssp C-----------CCCEESCCTTCBCCTTCEEEEEESC
T ss_pred ecccC-----CCCeEEECCCCCcEECCCCEEEEEECC
Confidence 42111 134566679999999999999887754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=150.05 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=123.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|.+|+.+++.|. +.|++|+++|.|+++.+.+++.+..++.||.++++.+++++++++|.++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELH----------RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHH----------HTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CCcEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 358999999999999999998 7899999999999999888877888899999999999999999999999
Q ss_pred EEeCCH-HHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDK-KRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d-~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
.+++++ +.|..++..+|+.+|+ +++++++++.+.+.++++|+|.|+.|+..++..+++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~~~ 138 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIP-NIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD 138 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHHhh
Confidence 999986 8899999999999986 9999999999999999999999999999999999999987
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=145.08 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=121.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++|+|+|++|+.+++.|. +.|++|+++|.|+++.+.+++ .+..++.||.++++.+++++++++|.++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLS----------EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 47999999999999999998 789999999999999988875 4788899999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+++++++.|..++..+++.+++ +++++++++++.+.++++|+|.|++|+...+.++++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~g~~~v~~p~~~~~~~~~~~~~~ 136 (140)
T 1lss_A 75 AVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLIER 136 (140)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHHTC
T ss_pred EeeCCchHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHcCCCEEECHHHHHHHHHHHHhcc
Confidence 9999999999999999998875 8999999999999999999999999999999999987765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=151.56 Aligned_cols=134 Identities=21% Similarity=0.266 Sum_probs=124.2
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
...++++|+|+|++|+.+++.|. +.|++|+++|.|+++.+.++ +.|..++.||.++++.|++++++++|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~----------~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad 86 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLAS----------SSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKAD 86 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCS
T ss_pred cCCCcEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCC
Confidence 35678999999999999999998 78999999999999998887 67888899999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
.+++++++++.|..++..+|+++|..+++++++++.+.+.++++|+| +++|+..++..+++.+..
T Consensus 87 ~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l~~ 151 (155)
T 2g1u_A 87 MVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFIIG 151 (155)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888999999999999999999999 999999999988877654
|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=155.38 Aligned_cols=219 Identities=13% Similarity=0.038 Sum_probs=145.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH--H-HH--hcCCCEEEccCCCHHHHHhcCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK--E-SR--KLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~--~-~~--~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.++||||||+++.++ +...|++.+.. +..+.+.+||++..++...+ . +. ...+.+++||+++++.|++|+++
T Consensus 2 gk~HivvcG~~~~~~-l~~fL~ef~~~--~~~~~~~~vVil~~~~p~~el~~~l~~~~~~v~~i~Gs~~~~~dL~ra~i~ 78 (722)
T 4hpf_A 2 GKKFIVVCGNITVDS-VTAFLRNFLRD--KSGEINTEIVFLGETPPSLELETIFKCYLAYTTFISGSAMKWEDLRRVAVE 78 (722)
T ss_dssp -CCEEEEESCCCHHH-HHHHHTTC----------CCEEECCBSCC------CCCCTTTTSEECCBCCSSCHHHHHHHTGG
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHhhh--hhhcCCCeEEEEeCCCCCHHHHHHHhhhCceEEEEEcCCCCHHHHHhcCcc
Confidence 378999999998876 44444421111 11234667888865443221 1 11 12355678999999999999999
Q ss_pred CCcEEEEEeC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH------CCCCeEEcCcHHHHHHHHHH
Q 003861 605 SPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK------AGATDAILENAETSLQLGSK 670 (791)
Q Consensus 605 ~a~~viv~~~--------~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~------~Gad~Vi~p~~~~~~~la~~ 670 (791)
+|+++++..+ +|..|+..++.+|+.+|+++|+|+..++++...+++ +|||.||++++..+..||+.
T Consensus 79 ~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~~~iivq~~~~~n~~~~~~~~~~~~~gad~VI~~~el~~~lla~s 158 (722)
T 4hpf_A 79 SAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDTGDNIICFAELKLGFIAQG 158 (722)
T ss_dssp GSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTTCCEEEECSSGGGGGHHHHSTTCCTTTTCEEECHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCccCCchhhHHHHHHHHHHHHHhCCCCCEEEEECChhhHHHHHhhhhhhhcCCCeEEeHHHHHHHHHHHH
Confidence 9999999875 488999999999999999999999999999888776 69999999999999999999
Q ss_pred HHhhcCCChHHHHHHHHHHhccccc------cee-----------eeecCCCchhhcc--------cccCCcchhhhhhc
Q 003861 671 LLKGFGVMSDDVTFLRQLVRNSMEI------QAQ-----------EVLSQKDDQEFDI--------MKPLQVRVADIVEA 725 (791)
Q Consensus 671 ~l~~l~~~~~~~~~l~~~~~~~~~~------~~~-----------e~~~~~~~~~~~~--------~~~~~i~~~~l~~~ 725 (791)
++. |+....+..+++..... |.. .+..++ ...+++ .++.++-...+.+.
T Consensus 159 ~~~-----PG~stli~~Ll~~~~~~~~~~~~w~~~Y~~g~~~eiy~~~~~~-~~~G~tf~e~~~~~~~~~~~iligi~~~ 232 (722)
T 4hpf_A 159 CLV-----PGLCTFLTSLFVEQNKKVMPKQTWKKHFLNSMKNKILTQRLSD-DFAGMSFPEVARLCFLKMHLLLIAIEYK 232 (722)
T ss_dssp HHS-----TTHHHHHHHTTCCCCSCCCCSSHHHHHHHHHHTCBCCEEECCG-GGTTCBHHHHHHHHHHHSCCEEEEEEC-
T ss_pred hcC-----CCHHHHHHHHHhcccccccchhhHHHHHhcccCceEEEeeCCc-ccCCCCHHHHHHHHHhhcCeEEEEeecc
Confidence 998 99988888887653211 111 111111 111121 12223333333321
Q ss_pred cCCCCCCCCccccccCCCCCCCCCCCCceeeeecc
Q 003861 726 EKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELN 760 (791)
Q Consensus 726 ~~~~~~~~~~~~~~~~p~~~~~~~~gd~~l~~~~~ 760 (791)
... .-.+++..+=|++++++++||.+.+.+..
T Consensus 233 ~~~---~~~~~~i~lNP~~~~~i~~~D~~~~Ia~~ 264 (722)
T 4hpf_A 233 SLF---TDGFCGLILNPPPQVRIRKNTLGFFIAET 264 (722)
T ss_dssp ---------CCCCEESCCTTCBCCTTCEEEEEBSC
T ss_pred ccc---ccCCCeEEECCCCCeEECCCCEEEEEECC
Confidence 110 11134566679999999999999988653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=72.51 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=78.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++|+|.|.+|+.+++.|. +.| ++|+++|.++++.+.+.+.+...+.+|.++++.++++ ++++|.++
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~----------~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~d~vi 74 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLK----------TSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKA-LGGFDAVI 74 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHH----------HCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHH-TTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHH-HcCCCEEE
Confidence 47999999999999999998 778 8999999999999988888899999999999998876 67899998
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~ 646 (791)
.+++.. .+..++..+++.+ ++.+--..+.+..+
T Consensus 75 ~~~~~~-~~~~~~~~~~~~g--~~~~~~~~~~~~~~ 107 (118)
T 3ic5_A 75 SAAPFF-LTPIIAKAAKAAG--AHYFDLTEDVAATN 107 (118)
T ss_dssp ECSCGG-GHHHHHHHHHHTT--CEEECCCSCHHHHH
T ss_pred ECCCch-hhHHHHHHHHHhC--CCEEEecCcHHHHH
Confidence 888643 3444555555543 34443334433333
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00019 Score=75.22 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=75.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHH----------------------h-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR----------------------K- 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~----------------------~- 582 (791)
.++++|+|.|+.|...++.|. +.|.+|+|||.+.. ..+.+. +
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll----------~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLM----------PTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTK 82 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHG----------GGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------hCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhccccccccccc
Confidence 357999999999999999998 89999999998753 222221 1
Q ss_pred cCC-CEEEccCCCHHHHH---hcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH
Q 003861 583 LGF-PILYGDASRPAVLL---SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL 646 (791)
Q Consensus 583 ~~~-~~v~GD~t~~~~L~---~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~ 646 (791)
.+. .++.++.. ++-|+ + ++.++.|++++++++.|..++..+|+.+..-..+.++++++...
T Consensus 83 g~i~~~i~~~~~-~~dL~~l~~--~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~ 147 (274)
T 1kyq_A 83 NEIYEYIRSDFK-DEYLDLENE--NDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCD 147 (274)
T ss_dssp CCCSEEECSSCC-GGGGCCSST--TCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBS
T ss_pred CCeeEEEcCCCC-HHHHhhccc--CCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCe
Confidence 223 55666543 33332 3 56899999999999999999999999843224677788888765
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00055 Score=69.58 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=68.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|++|...++.|. +.|.+|++|+.+.. .++.+.+ .+..++.++..+ ..++++|.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll----------~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~------~dL~~adL 94 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFL----------QEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE------EDLLNVFF 94 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHG----------GGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG------GGSSSCSE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH------hHhCCCCE
Confidence 457999999999999999998 88999999987654 3444444 346666665542 35678999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
||++|++++.|..++..+| .+ ++ +.++++++.
T Consensus 95 VIaAT~d~~~N~~I~~~ak-~g--i~-VNvvD~p~~ 126 (223)
T 3dfz_A 95 IVVATNDQAVNKFVKQHIK-ND--QL-VNMASSFSD 126 (223)
T ss_dssp EEECCCCTHHHHHHHHHSC-TT--CE-EEC-----C
T ss_pred EEECCCCHHHHHHHHHHHh-CC--CE-EEEeCCccc
Confidence 9999999999999998886 43 33 556666665
|
| >3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00057 Score=81.04 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=101.4
Q ss_pred ccCCCCEEEeCCChhH------HHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHH
Q 003861 528 YEGSEPVVIVGFGQMG------QVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAV 597 (791)
Q Consensus 528 ~~~~~~viI~G~G~~G------~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~ 597 (791)
...++|+|||++|.-. +.+..-|+ ...-+.++-.++|++...+-..++++. ..+.++.|++...+.
T Consensus 398 ~~~~nHivvC~~~~~~~~~~gl~~fv~PLR----a~~~~~~~l~~IVil~~~~~~~~~w~~i~~Fp~Vy~v~Gspl~~~d 473 (798)
T 3naf_A 398 TVLSGHVVVCIFGDVSSALIGLRNLVMPLR----ASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRAD 473 (798)
T ss_dssp SCCCSCEEEEEECCSSSCCCCTHHHHHHHH----CSSSCSTTCCCEEEEBCHHHHHHHHTTTTTSSSEEBCBSCTTCHHH
T ss_pred hccCCCEEEEEecCCCcchhhhHHhhhhhh----cccCCccccCCEEEECCCCcCHHHHHHhhCCCceEEecCCCCCHHH
Confidence 4688999999998543 34455554 222222334578888764433344543 346778899999999
Q ss_pred HHhcCCCCCcEEEEEeCC----------HHHHHHHHHHHHHh--------------------------------------
Q 003861 598 LLSAGITSPKAVMIMYTD----------KKRTIEAVQRLRLA-------------------------------------- 629 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~----------d~~n~~~~~~ar~l-------------------------------------- 629 (791)
|++|||+.|+.+|+..+. |..++++++++|.+
T Consensus 474 L~~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (798)
T 3naf_A 474 LRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQP 553 (798)
T ss_dssp HHHTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-----------------------------------
T ss_pred HHHhCHHhCCEEEEEcCCCCCCCChhhhhHHHHHhhhhhhhhccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999998888542 45677666666552
Q ss_pred ----CCCCcEEEEecChhhHHHHHHCC-----CCeEEcCcHHHHHH----HHHHHHhhcCCChHHHHHHHHHHhcc
Q 003861 630 ----FPAIPIYARAQDMMHLLDLKKAG-----ATDAILENAETSLQ----LGSKLLKGFGVMSDDVTFLRQLVRNS 692 (791)
Q Consensus 630 ----~p~~~iiara~~~~~~~~L~~~G-----ad~Vi~p~~~~~~~----la~~~l~~l~~~~~~~~~l~~~~~~~ 692 (791)
+++++++....++.|.+.+.... .+....|....|.. +-..++...-..+..++.+..++...
T Consensus 554 ~~~~~~~ipiitEL~~~~ni~fl~~~~~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg 629 (798)
T 3naf_A 554 SITTGVNIPIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGG 629 (798)
T ss_dssp ---CTTCCCEEEEESSTTGGGGGSCCTTCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCS
T ss_pred ccccCCCCceEEEecCCCccccccccCCCccCcceeecccccccceeHHHHHHHHHHHHHhCHHHHHHHHHHHhCC
Confidence 56788999999999988886632 22222222222222 12222222233467777777777654
|
| >1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=2.6e-06 Score=85.91 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=83.0
Q ss_pred cCCCHHHHHhcCCCCCc------EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHH
Q 003861 591 DASRPAVLLSAGITSPK------AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETS 664 (791)
Q Consensus 591 D~t~~~~L~~agi~~a~------~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~ 664 (791)
|.+|++.+.+.+++++| .++.++++|+.|...++. |+.+-+ +||++++++.+...+++.|++.++ .+
T Consensus 42 ~~a~~~ll~ee~i~~~d~~l~~~i~v~~t~~de~n~L~~ll-k~aGa~-~VIa~~~~~~~~~vl~~~gi~~vi----~~- 114 (205)
T 1vct_A 42 EIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVITIL-QIANAI-EDISNAAGDLAKMVLEGVELHPVI----KE- 114 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHTTCCCCHHH----HH-
T ss_pred HHHHHHHHHHHHHHHhhhhhceeeeeecCChhhHHHHHHHH-HHcCCC-EEEcccchHHHHHHHHhcCCCHHH----HH-
Confidence 44567777777888877 777777777777766664 666532 577777777777777777777443 11
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHhcccccceeeeecCCC-chhhcccccCCc------chhhhhhccCCCCCCCCccc
Q 003861 665 LQLGSKLLKGFGVMSDDVTFLRQLVRNSMEIQAQEVLSQKD-DQEFDIMKPLQV------RVADIVEAEKTIPSTSNDDK 737 (791)
Q Consensus 665 ~~la~~~l~~l~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~i------~~~~l~~~~~~~~~~~~~~~ 737 (791)
.++ . .+..+.++.++.. .+.+++++++++ ++..++| +++
T Consensus 115 ------~~r-----------------~-~~~~~~e~~v~~~s~~~GktL~el~l~~~~gv~IvaI~R----------~g~ 160 (205)
T 1vct_A 115 ------TIL-----------------E-GEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRR----------GKR 160 (205)
T ss_dssp ------HHH-----------------H-SSSEEEEEECCTTCTTTTCBHHHHCHHHHHSCEEEEEEE----------TTE
T ss_pred ------HHH-----------------h-ccCeEEEEEECCCCccCCCCHHHcCCCccCCEEEEEEEE----------CCE
Confidence 111 1 1234444444332 245666665543 4445554 234
Q ss_pred cccCCCCCCCCCCCCceeeeeccCCC
Q 003861 738 LSREDNTDTAGEDAKGVLYCELNGTN 763 (791)
Q Consensus 738 ~~~~p~~~~~~~~gd~~l~~~~~~~~ 763 (791)
....|++++.|++||.|..+|....-
T Consensus 161 ~i~~P~~dt~L~~GD~Liv~g~~~~i 186 (205)
T 1vct_A 161 WIFGPNENFKIRAGDVLIGRGTRTSI 186 (205)
T ss_dssp EEESCCTTCBCCTTCEEEEEECHHHH
T ss_pred EEeCCCCCCEECCCCEEEEEECHHHH
Confidence 45579999999999999999986653
|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00064 Score=81.25 Aligned_cols=123 Identities=18% Similarity=0.132 Sum_probs=84.2
Q ss_pred cCCCCEEEeCCChh---HHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhc
Q 003861 529 EGSEPVVIVGFGQM---GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 529 ~~~~~viI~G~G~~---G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~a 601 (791)
..++|+||||+|.- +..+.... .|++....+..+=.++|++..++-..+.+.. ..+.++.|++.+.+.|++|
T Consensus 383 ~~~nhivvc~~~~~~~~~~gL~~fi-~PLRa~~~~~~el~pIViL~~~~~~~~~w~~i~~Fp~Vy~~~GSpl~~~DL~ra 461 (722)
T 4hpf_A 383 KFRNHIVACVFGDAHSAPMGLRNFV-MPLRASNYTRKELKDIVFIGSLDYLQREWRFLWNFPQIYILPGCALYSGDLHAA 461 (722)
T ss_dssp CCCSCEEEEECCCTTSCCCCSHHHH-GGGGBTTSCGGGCCCEEEEECHHHHHHHGGGGTTCSSEEEEESCTTCHHHHHHT
T ss_pred cccCCEEEEeccCcccccccchhhe-eeccccccccccCCCEEEEeCCCCCHHHHHHHhcCCCEEEEECCcCCHHHHHhc
Confidence 57899999997642 22232222 2333222222233467777654433344443 2467889999999999999
Q ss_pred CCCCCcEEEEEeCC----------HHHHHHHHHHHHHh-------CCCCcEEEEecChhhHHHHHHCC
Q 003861 602 GITSPKAVMIMYTD----------KKRTIEAVQRLRLA-------FPAIPIYARAQDMMHLLDLKKAG 652 (791)
Q Consensus 602 gi~~a~~viv~~~~----------d~~n~~~~~~ar~l-------~p~~~iiara~~~~~~~~L~~~G 652 (791)
|+..|+.+|+...+ |.+++.++++++++ +|.++++....++.+.+.+....
T Consensus 462 gi~~a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iitEL~~~sN~~fl~~~~ 529 (722)
T 4hpf_A 462 NIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILTELKNPSNIHFIEQLG 529 (722)
T ss_dssp TGGGCSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC-------CCCEEEECSSGGGHHHHHHHH
T ss_pred CcccccEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEEEecCcccchhhcccc
Confidence 99999999887621 56788889999888 47788999999999999987543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0023 Score=69.90 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=84.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+|+|+|.|.+|+.+++.|. ...+|.+.|.++++.+.+++. ...+..|.+|++.|+++ ++++|.|
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~-----------~~~~v~~~~~~~~~~~~~~~~-~~~~~~d~~d~~~l~~~-~~~~DvV 81 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLK-----------DEFDVYIGDVNNENLEKVKEF-ATPLKVDASNFDKLVEV-MKEFELV 81 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHT-----------TTSEEEEEESCHHHHHHHTTT-SEEEECCTTCHHHHHHH-HTTCSEE
T ss_pred CccEEEEECCCHHHHHHHHHHh-----------cCCCeEEEEcCHHHHHHHhcc-CCcEEEecCCHHHHHHH-HhCCCEE
Confidence 3446999999999999999995 467999999999999887654 66788999999999887 7889999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHCCCCeE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDA 656 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~----~~~~~~L~~~Gad~V 656 (791)
|.+++.. .+..++..+-+.+. +.+-...+ .+..+..+++|+.-+
T Consensus 82 i~~~p~~-~~~~v~~~~~~~g~--~yvD~s~~~~~~~~l~~~a~~~g~~~i 129 (365)
T 3abi_A 82 IGALPGF-LGFKSIKAAIKSKV--DMVDVSFMPENPLELRDEAEKAQVTIV 129 (365)
T ss_dssp EECCCGG-GHHHHHHHHHHHTC--EEEECCCCSSCGGGGHHHHHHTTCEEE
T ss_pred EEecCCc-ccchHHHHHHhcCc--ceEeeeccchhhhhhhhhhccCCceee
Confidence 8888764 56677788888763 44433322 234456677776543
|
| >3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.46 Score=50.98 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHHHH-hhhhhHHHHHHHHHH
Q 003861 433 IKTLIISAIGPRVGLTLQESVRIGLLL-SQGGEFAFVVFSLAN 474 (791)
Q Consensus 433 ~K~l~~~~~~~~~~~~~r~~~~~g~~l-~~rG~~~lvla~~a~ 474 (791)
.-+...+..++.+|.+.+++..+++.. .+....++.++....
T Consensus 240 ~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 240 IGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 334455667778899999999888854 444666766665543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.001 Score=70.50 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=68.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc--------CCCHHHHHhcCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD--------ASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD--------~t~~~~L~~agi~ 604 (791)
++.|+|.|.+|..++..|. +.|++|+++|.++++.+.+++.|......+ .++++-+.+ .++
T Consensus 5 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 73 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLH----------QGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDH-QNE 73 (316)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCT-TSC
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcc-cCC
Confidence 6899999999999999998 789999999999999999887775544311 112211111 245
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHHHHH
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLLDLK 649 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~~L~ 649 (791)
++|.+++++..+. ...+...++.. .|+..++.-.+.....+.+.
T Consensus 74 ~~d~vi~~v~~~~-~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~ 118 (316)
T 2ew2_A 74 QVDLIIALTKAQQ-LDAMFKAIQPMITEKTYVLCLLNGLGHEDVLE 118 (316)
T ss_dssp CCSEEEECSCHHH-HHHHHHHHGGGCCTTCEEEECCSSSCTHHHHT
T ss_pred CCCEEEEEecccc-HHHHHHHHHHhcCCCCEEEEecCCCCcHHHHH
Confidence 8999999998653 23333344443 44433444444444444443
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0027 Score=66.09 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=68.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++|.|. |.+|+.+++.|. +. |++|++++.+++..+.+.+.+..++.+|.+|++.++++ ++++|+|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~d~v 70 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLL----------KKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKA-FAGVSKL 70 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHT----------TTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred eEEEEcCCchHHHHHHHHHH----------HhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHH-HhcCCEE
Confidence 5888987 999999999998 66 99999999999887777777899999999999999876 5678988
Q ss_pred EEEeCC---HHHHHH----HHHHHHHhC
Q 003861 610 MIMYTD---KKRTIE----AVQRLRLAF 630 (791)
Q Consensus 610 iv~~~~---d~~n~~----~~~~ar~l~ 630 (791)
+-+... ++.|+. ++..+++.+
T Consensus 71 i~~a~~~~~~~~n~~~~~~l~~a~~~~~ 98 (287)
T 2jl1_A 71 LFISGPHYDNTLLIVQHANVVKAARDAG 98 (287)
T ss_dssp EECCCCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCcCchHHHHHHHHHHHHHHHcC
Confidence 876653 222443 344555554
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0037 Score=66.37 Aligned_cols=111 Identities=18% Similarity=0.100 Sum_probs=73.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+.++.|+|+|.+|..+++.|. +.|++|++.|.++++.+.+.+.|......|..+ -++++|.|+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e-------~~~~aDvvi 69 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCL----------RAGLSTWGADLNPQACANLLAEGACGAAASARE-------FAGVVDALV 69 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEESSSTT-------TTTTCSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHcCCccccCCHHH-------HHhcCCEEE
Confidence 457999999999999999998 889999999999999999988876653333321 246899999
Q ss_pred EEeCCHHHHHHHH---HHH-HHhCCCCcEEEEecC--hhh----HHHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAV---QRL-RLAFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~---~~a-r~l~p~~~iiara~~--~~~----~~~L~~~Gad~Vi~p 659 (791)
++++++...-.+. ..+ ..+.|+ .+++-..+ +.. .+.+++.|+..+-.|
T Consensus 70 ~~vp~~~~~~~v~~~~~~l~~~l~~g-~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 70 ILVVNAAQVRQVLFGEDGVAHLMKPG-SAVMVSSTISSADAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp ECCSSHHHHHHHHC--CCCGGGSCTT-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred EECCCHHHHHHHHhChhhHHhhCCCC-CEEEecCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 9999864332222 111 223344 34443332 222 234455677655444
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=64.52 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.....+..++.+|.+|++.++++ ++++|.+|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi 72 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAV----------QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVI 72 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHH-HcCCCEEE
Confidence 46899998 999999999998 7899999999998875544345788999999999998876 46789888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
-+.+.
T Consensus 73 ~~a~~ 77 (206)
T 1hdo_A 73 VLLGT 77 (206)
T ss_dssp ECCCC
T ss_pred ECccC
Confidence 77653
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0067 Score=64.18 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+.++.|+|+|.+|..+++.|. +.|++|++.|.|+++++++.+.|... .++.+-+ ++ +|.|+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~~~----~~-aDvvi 75 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMT----------EWPGGVTVYDIRIEAMTPLAEAGATL----ADSVADV----AA-ADLIH 75 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHT----------TSTTCEEEECSSTTTSHHHHHTTCEE----CSSHHHH----TT-SSEEE
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCEE----cCCHHHH----Hh-CCEEE
Confidence 457999999999999999998 88999999999999999998877543 2333332 24 99999
Q ss_pred EEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC--hhh----HHHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~-l~p~~~iiara~~--~~~----~~~L~~~Gad~Vi~p 659 (791)
++++++...-.+...+.+ +.|+ .+++-..+ +.. .+.+++.|+..+-.|
T Consensus 76 ~~vp~~~~~~~v~~~l~~~l~~g-~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~p 130 (296)
T 3qha_A 76 ITVLDDAQVREVVGELAGHAKPG-TVIAIHSTISDTTAVELARDLKARDIHIVDAP 130 (296)
T ss_dssp ECCSSHHHHHHHHHHHHTTCCTT-CEEEECSCCCHHHHHHHHHHHGGGTCEEEECC
T ss_pred EECCChHHHHHHHHHHHHhcCCC-CEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 999986443333333333 3344 44443333 222 233455577655333
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0037 Score=67.69 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..+++.|+|+|.+|..+++.|. +.|++|++.|.|++..+.+.+.|.... .+.++.++++ .+++|.|
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~~~~a~~~G~~~~---~~~~e~~~~a-~~~aDlV 72 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLH----------AANHSVFGYNRSRSGAKSAVDEGFDVS---ADLEATLQRA-AAEDALI 72 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSCHHHHHHHHHTTCCEE---SCHHHHHHHH-HHTTCEE
T ss_pred CCCEEEEEeecHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeee---CCHHHHHHhc-ccCCCEE
Confidence 3457999999999999999998 789999999999999999988887431 1224556555 5678999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+++++.+ ....+...++...|+ .++.-+
T Consensus 73 ilavP~~-~~~~vl~~l~~~~~~-~iv~Dv 100 (341)
T 3ktd_A 73 VLAVPMT-AIDSLLDAVHTHAPN-NGFTDV 100 (341)
T ss_dssp EECSCHH-HHHHHHHHHHHHCTT-CCEEEC
T ss_pred EEeCCHH-HHHHHHHHHHccCCC-CEEEEc
Confidence 9999854 333444455555555 344333
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0055 Score=65.04 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=81.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|++.|.++++.+.+.+.|..++. .+.++++ ++++|.|+
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~l~~~-l~~aDvVi 220 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFA----------ALGANVKVGARSSAHLARITEMGLVPFH-----TDELKEH-VKDIDICI 220 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCEEEE-----GGGHHHH-STTCSEEE
T ss_pred CCEEEEEcccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCeEEc-----hhhHHHH-hhCCCEEE
Confidence 357999999999999999998 7899999999999887777666655432 1224332 57899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHCCCCeEEcCcHHHHH--HHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILENAETSL--QLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~~--~~~~~L~~~Gad~Vi~p~~~~~~--~la~~~l~ 673 (791)
.+++....|- ...+.+.|+..+|-.++.+ ...+..++.|+..+..|...++. ..+..++.
T Consensus 221 ~~~p~~~i~~---~~~~~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~pg~~g~v~~a~a~~l~~ 284 (300)
T 2rir_A 221 NTIPSMILNQ---TVLSSMTPKTLILDLASRPGGTDFKYAEKQGIKALLAPGLPGIVAPKTAGQILA 284 (300)
T ss_dssp ECCSSCCBCH---HHHTTSCTTCEEEECSSTTCSBCHHHHHHHTCEEEECCCHHHHHCHHHHHHHHH
T ss_pred ECCChhhhCH---HHHHhCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 9988643221 1334455554454444432 11356677899777677554432 33344443
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0049 Score=64.03 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=67.0
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+++|.|. |.+|+.+++.|. +. |++|++++.+++..+.+.+.+..++.+|.+|++.++++ ++++|+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLM----------KTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSA-LQGVEKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHT----------TTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHH-TTTCSEE
T ss_pred CEEEEcCCchHHHHHHHHHH----------hhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHH-HhCCCEE
Confidence 3678887 999999999998 66 99999999998887777777899999999999999876 5678988
Q ss_pred EEEeCCH-----HHHHHHHHHHHHhCC
Q 003861 610 MIMYTDK-----KRTIEAVQRLRLAFP 631 (791)
Q Consensus 610 iv~~~~d-----~~n~~~~~~ar~l~p 631 (791)
+-+.+.. .....+...+++.+.
T Consensus 70 i~~a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 70 LLISSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp EECC--------CHHHHHHHHHHHHTC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence 8765532 122334455666553
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0095 Score=63.34 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~agi~~a~~v 609 (791)
..++.|+|+|.+|..+++.|. +.|++|++.|.++++.+++.+.|... .++ .+.++ ++|.|
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~e~~~-----~aDvV 69 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLL----------KQGKRVAIWNRSPGKAAALVAAGAHL----CESVKAALS-----ASPAT 69 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTCEE----CSSHHHHHH-----HSSEE
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCee----cCCHHHHHh-----cCCEE
Confidence 457999999999999999998 88999999999999999988877532 233 33443 58999
Q ss_pred EEEeCCHHHHHHHHH--HHHHhCCCCcEEEEecC--h----hhHHHHHHCCCCeE
Q 003861 610 MIMYTDKKRTIEAVQ--RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDA 656 (791)
Q Consensus 610 iv~~~~d~~n~~~~~--~ar~l~p~~~iiara~~--~----~~~~~L~~~Gad~V 656 (791)
+++++++...-.+.. .+....|+ .+++-..+ + +-.+.+++.|+..+
T Consensus 70 i~~vp~~~~~~~v~~~~~l~~~~~g-~ivid~st~~~~~~~~l~~~~~~~g~~~v 123 (306)
T 3l6d_A 70 IFVLLDNHATHEVLGMPGVARALAH-RTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306)
T ss_dssp EECCSSHHHHHHHHTSTTHHHHTTT-CEEEECCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred EEEeCCHHHHHHHhcccchhhccCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 999998753333322 33445555 44443332 2 22334566677654
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0044 Score=69.84 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=72.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|+|.|+.|...++.|. +.|.+|+++|.+.. ..+.+.+ .+..++.++..+. .+++++.|
T Consensus 13 ~~vlVvGgG~va~~k~~~L~----------~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~------~l~~~~lV 76 (457)
T 1pjq_A 13 RDCLIVGGGDVAERKARLLL----------EAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET------LLDSCWLA 76 (457)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG------GGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCcc------ccCCccEE
Confidence 47999999999999999998 89999999998643 3344433 4577777765432 34689999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL 645 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~ 645 (791)
|+++++++.|..++..+|+.+ ++ +-.+++++..
T Consensus 77 i~at~~~~~n~~i~~~a~~~~--i~-vn~~d~~e~~ 109 (457)
T 1pjq_A 77 IAATDDDTVNQRVSDAAESRR--IF-CNVVDAPKAA 109 (457)
T ss_dssp EECCSCHHHHHHHHHHHHHTT--CE-EEETTCTTSS
T ss_pred EEcCCCHHHHHHHHHHHHHcC--CE-EEECCCcccC
Confidence 999998889999999999975 33 4455666553
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0099 Score=63.62 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|.+|..+++.|. +.|++|++.|.++++.+++.+.|.... ++.+-+ ++++|.|++
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~l~~~g~~~~----~~~~e~----~~~aDvVi~ 93 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLC----------EAGYALQVWNRTPARAASLAALGATIH----EQARAA----ARDADIVVS 93 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTTCEEE----SSHHHH----HTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHHCCCEee----CCHHHH----HhcCCEEEE
Confidence 47999999999999999998 789999999999999999988765432 233222 357899999
Q ss_pred EeCCHHHHHHHH---HHHHHhCCCCcEEEEecC--hh----hHHHHHHCCCCeEEcC
Q 003861 612 MYTDKKRTIEAV---QRLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILE 659 (791)
Q Consensus 612 ~~~~d~~n~~~~---~~ar~l~p~~~iiara~~--~~----~~~~L~~~Gad~Vi~p 659 (791)
+++++...-.+. ..+..+.++ .+++-..+ +. -.+.+++.|+..+-.|
T Consensus 94 ~vp~~~~~~~v~~~~~~~~~l~~~-~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p 149 (320)
T 4dll_A 94 MLENGAVVQDVLFAQGVAAAMKPG-SLFLDMASITPREARDHAARLGALGIAHLDTP 149 (320)
T ss_dssp CCSSHHHHHHHHTTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred ECCCHHHHHHHHcchhHHhhCCCC-CEEEecCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 999865433333 233445555 44443333 22 2234566788766444
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0058 Score=64.87 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|-++|+|.+|..+++.|. +.|++|++.|.++++++++.+.|..+. .+++ + =++++|.+
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~G~~~~----~s~~---e-~~~~~dvv 65 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILL----------EAGYELVVWNRTASKAEPLTKLGATVV----ENAI---D-AITPGGIV 65 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHH----------HTTCEEEEC-------CTTTTTTCEEC----SSGG---G-GCCTTCEE
T ss_pred CCCcEEEEecHHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCeEe----CCHH---H-HHhcCCce
Confidence 4567999999999999999998 899999999999999998888775542 2222 1 14678999
Q ss_pred EEEeCCHHHHHHH--HHHHHHhCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCc
Q 003861 610 MIMYTDKKRTIEA--VQRLRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 610 iv~~~~d~~n~~~--~~~ar~l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~ 660 (791)
+++.+++.....+ ...+....++ .+++-..+ .+..+.+++.|+..+=.|-
T Consensus 66 i~~l~~~~~~~~v~~~~~~~~~~~~-~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapV 123 (297)
T 4gbj_A 66 FSVLADDAAVEELFSMELVEKLGKD-GVHVSMSTISPETSRQLAQVHEWYGAHYVGAPI 123 (297)
T ss_dssp EECCSSHHHHHHHSCHHHHHHHCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred eeeccchhhHHHHHHHHHHhhcCCC-eEEEECCCCChHHHHHHHHHHHhcCCceecCCc
Confidence 9999987543332 2345556655 45554332 3344567788998887765
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.009 Score=62.76 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=72.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+++.|. +.|++|++.|.++++.+++.+.|.... .+-.+.+ +++|.|+++
T Consensus 3 ~i~iIG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDvvi~~ 64 (287)
T 3pef_A 3 KFGFIGLGIMGSAMAKNLV----------KAGCSVTIWNRSPEKAEELAALGAERA---ATPCEVV-----ESCPVTFAM 64 (287)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSGGGGHHHHHTTCEEC---SSHHHHH-----HHCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCeec---CCHHHHH-----hcCCEEEEE
Confidence 6899999999999999998 789999999999999999988765331 1222333 357999999
Q ss_pred eCCHHHHHHHH---HHH-HHhCCCCcEEEEecC--hh----hHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---QRL-RLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~~a-r~l~p~~~iiara~~--~~----~~~~L~~~Gad~Vi~p 659 (791)
++++...-.+. ..+ ..+.++ .+++-..+ +. -.+.+++.|+..+-.|
T Consensus 65 vp~~~~~~~v~~~~~~l~~~l~~~-~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pef_A 65 LADPAAAEEVCFGKHGVLEGIGEG-RGYVDMSTVDPATSQRIGVAVVAKGGRFLEAP 120 (287)
T ss_dssp CSSHHHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCHHHHHHHHcCcchHhhcCCCC-CEEEeCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence 99764433333 222 334455 44444333 22 2334566677655444
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0066 Score=64.33 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHH---HHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVK---ESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~---~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
+.++++|.|. |.+|+.+++.|. +.|++|++++.+++ ..+ .+.+.+..++.+|.+|++.++++ ++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-~~ 78 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSL----------KLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVEL-MK 78 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHH----------HTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHH-HT
T ss_pred CCCeEEEECCCchHHHHHHHHHH----------HCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHH-Hc
Confidence 3457999996 999999999998 78999999999874 332 34567899999999999999876 45
Q ss_pred CCcEEEEEeCCH--HHHHHHHHHHHHhC
Q 003861 605 SPKAVMIMYTDK--KRTIEAVQRLRLAF 630 (791)
Q Consensus 605 ~a~~viv~~~~d--~~n~~~~~~ar~l~ 630 (791)
.+|+|+.+.+.. .....++..+++.+
T Consensus 79 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g 106 (318)
T 2r6j_A 79 KVDVVISALAFPQILDQFKILEAIKVAG 106 (318)
T ss_dssp TCSEEEECCCGGGSTTHHHHHHHHHHHC
T ss_pred CCCEEEECCchhhhHHHHHHHHHHHhcC
Confidence 689888877642 22344556677765
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0082 Score=63.96 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|.+|..+++.|. +.|++|++.|.++++++++.+.|... -.+..+.+ +++|.|++
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~----------~~G~~V~~~dr~~~~~~~l~~~g~~~---~~~~~~~~-----~~aDvvi~ 83 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLL----------KNGFKVTVWNRTLSKCDELVEHGASV---CESPAEVI-----KKCKYTIA 83 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSGGGGHHHHHTTCEE---CSSHHHHH-----HHCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCeE---cCCHHHHH-----HhCCEEEE
Confidence 47999999999999999998 78999999999999999998877543 11223333 35799999
Q ss_pred EeCCHHHHHHHH---HHH-HHhCCCCcEEEEecC--h----hhHHHHHHCCCCeEEcC
Q 003861 612 MYTDKKRTIEAV---QRL-RLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 612 ~~~~d~~n~~~~---~~a-r~l~p~~~iiara~~--~----~~~~~L~~~Gad~Vi~p 659 (791)
+++++...-.+. ..+ ..+.++ .+++-..+ + +-.+.+++.|+..+-.|
T Consensus 84 ~vp~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p 140 (310)
T 3doj_A 84 MLSDPCAALSVVFDKGGVLEQICEG-KGYIDMSTVDAETSLKINEAITGKGGRFVEGP 140 (310)
T ss_dssp CCSSHHHHHHHHHSTTCGGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EcCCHHHHHHHHhCchhhhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 998764333322 111 223344 44544433 2 22344566787665444
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0061 Score=63.44 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=60.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
..+++|.|.|.+|+.+++.|. +.|++|++++.+++..+.+.+.+..++.+|.+|.+ .+++|+||
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~------~~~~d~vi 68 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALA----------PQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS------LDGVTHLL 68 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHG----------GGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC------CTTCCEEE
T ss_pred cCcEEEECCcHHHHHHHHHHH----------HCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc------cCCCCEEE
Confidence 457999999999999999998 78999999999999988888889999999999944 67899888
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-+..
T Consensus 69 ~~a~ 72 (286)
T 3ius_A 69 ISTA 72 (286)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8764
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=62.28 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~vi 610 (791)
.++.|+|+|.+|+.+++.|. +.|++|+++|.++++.+.+.+.|... .++. +.+ +++|.|+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~D~vi 65 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLL----------KEGVTVYAFDLMEANVAAVVAQGAQA----CENNQKVA-----AASDIIF 65 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHTTTCEE----CSSHHHHH-----HHCSEEE
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHCCCee----cCCHHHHH-----hCCCEEE
Confidence 46999999999999999998 78999999999999999888776542 2233 333 3589999
Q ss_pred EEeCCHHHHHHHHH---HH-HHhCCCCcEEEEecCh-hhH----HHHHHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQ---RL-RLAFPAIPIYARAQDM-MHL----LDLKKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~---~a-r~l~p~~~iiara~~~-~~~----~~L~~~Gad~Vi~p 659 (791)
++++++...-.+.. .+ ..+.++..++...+-. ... +.+.+.|+..+-.|
T Consensus 66 ~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p 123 (301)
T 3cky_A 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAP 123 (301)
T ss_dssp ECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred EECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEcc
Confidence 99987654333332 23 3345554444433332 222 33445566554334
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0061 Score=64.03 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=60.9
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhH--HHHHhcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVV--KESRKLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v--~~~~~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.++|.|. |.+|+.+++.|. +.| ++|++++.+++.. +.+...+..++.+|.+|++.++++ ++.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~----------~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~-~~~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLL----------EDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELA-LNGA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHH-HTTC
T ss_pred CCEEEEECCCchHHHHHHHHHH----------hcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHH-HhcC
Confidence 457999998 999999999998 677 9999999988763 445567899999999999999876 4568
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.++.+.+
T Consensus 74 d~vi~~a~ 81 (299)
T 2wm3_A 74 YATFIVTN 81 (299)
T ss_dssp SEEEECCC
T ss_pred CEEEEeCC
Confidence 98887765
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0028 Score=63.45 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=67.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+.+..++.+|.+|++. +. ++++|+||-
T Consensus 2 kilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~--~~~~d~vi~ 68 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEAR----------RRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-AD--LDSVDAVVD 68 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HH--HTTCSEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHH----------HCCCEEEEEEecccccccccCCCceEEecccccccH-hh--cccCCEEEE
Confidence 3789997 999999999998 789999999999999888777889999999999887 33 457898887
Q ss_pred EeCC------HHHHHHHHHHHHHh
Q 003861 612 MYTD------KKRTIEAVQRLRLA 629 (791)
Q Consensus 612 ~~~~------d~~n~~~~~~ar~l 629 (791)
+.+. ...|+..+..+-+.
T Consensus 69 ~ag~~~~~~~~~~n~~~~~~l~~a 92 (224)
T 3h2s_A 69 ALSVPWGSGRGYLHLDFATHLVSL 92 (224)
T ss_dssp CCCCCTTSSCTHHHHHHHHHHHHT
T ss_pred CCccCCCcchhhHHHHHHHHHHHH
Confidence 7744 34566665555443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0096 Score=63.25 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=77.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|-++|+|.+|..+++.|. +.|++|++.|.++++++.+.+.|..+ +.+++-+ ++++|.++.+
T Consensus 5 kIgfIGlG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~----a~s~~e~----~~~~dvv~~~ 66 (300)
T 3obb_A 5 QIAFIGLGHMGAPMATNLL----------KAGYLLNVFDLVQSAVDGLVAAGASA----ARSARDA----VQGADVVISM 66 (300)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEE----CSSHHHH----HTTCSEEEEC
T ss_pred EEEEeeehHHHHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHHcCCEE----cCCHHHH----HhcCCceeec
Confidence 5889999999999999998 89999999999999999999887543 2333332 3679999999
Q ss_pred eCCHHHHHHHHHH----HHHhCCCCcEEEEecC------hhhHHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAVQR----LRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~~~----ar~l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p 659 (791)
.++++.--.+... +..+.|+ .+++-..+ .+..+.+++.|++.+=.|
T Consensus 67 l~~~~~v~~V~~~~~g~~~~~~~g-~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP 122 (300)
T 3obb_A 67 LPASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAP 122 (300)
T ss_dssp CSCHHHHHHHHHSSSSSTTSCCC--CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred CCchHHHHHHHhchhhhhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence 9987654444332 1222333 45554442 344566678899887666
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0068 Score=63.89 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=67.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-----hhhHHH---HHhcCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-----PSVVKE---SRKLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-----~~~v~~---~~~~~~~~v~GD~t~~~~L~~ag 602 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+ +++.+. +...+..++.||.+|++.++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~- 73 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASI----------SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDA- 73 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHH-
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------hCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHH-
Confidence 46999995 999999999998 789999999998 455443 3456899999999999999876
Q ss_pred CCCCcEEEEEeCCH------HHHHHHHHHHHHhC
Q 003861 603 ITSPKAVMIMYTDK------KRTIEAVQRLRLAF 630 (791)
Q Consensus 603 i~~a~~viv~~~~d------~~n~~~~~~ar~l~ 630 (791)
++.+|+|+.+.+.. .....++..+++.+
T Consensus 74 ~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g 107 (313)
T 1qyd_A 74 LKQVDVVISALAGGVLSHHILEQLKLVEAIKEAG 107 (313)
T ss_dssp HTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSC
T ss_pred HhCCCEEEECCccccchhhHHHHHHHHHHHHhcC
Confidence 46789888776532 23344556666664
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0072 Score=63.04 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=69.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++|.|. |.+|+.+++.|. +. |++|++++.+++..+.+.+.+..++.+|.+|++.++++ ++++|+|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~----------~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~-~~~~d~vi 70 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAI----------ANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEA-FKGMDTVV 70 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHH----------HTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHH-TTTCSEEE
T ss_pred EEEEEcCCchHHHHHHHHHh----------hCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHH-HhCCCEEE
Confidence 4788985 999999999998 55 99999999999987777778899999999999999876 46789888
Q ss_pred EEeCC---HHHHH----HHHHHHHHhCC
Q 003861 611 IMYTD---KKRTI----EAVQRLRLAFP 631 (791)
Q Consensus 611 v~~~~---d~~n~----~~~~~ar~l~p 631 (791)
-+.+. ...|+ .++..+++.+.
T Consensus 71 ~~a~~~~~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 71 FIPSIIHPSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp ECCCCCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred EeCCCCccchhhHHHHHHHHHHHHHcCC
Confidence 77653 22333 34555666553
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=69.58 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=62.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEc------cCCCHHHHHhcCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYG------DASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~G------D~t~~~~L~~agi~ 604 (791)
++.|+|.|.+|..++..|. +.|++|+++|. ++++.+.+.+.+.+..+| +.++++.++++ ++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 70 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLV----------DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC-LE 70 (335)
T ss_dssp EEEEESCCHHHHHHHHHHH----------HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH-HT
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHH-Hh
Confidence 4789999999999999998 78999999999 999999888766421111 12222223222 46
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
++|.|++++.++...-. ...++.+.|+..++...
T Consensus 71 ~~D~vi~~v~~~~~~~v-~~~i~~l~~~~~vv~~~ 104 (335)
T 1txg_A 71 NAEVVLLGVSTDGVLPV-MSRILPYLKDQYIVLIS 104 (335)
T ss_dssp TCSEEEECSCGGGHHHH-HHHHTTTCCSCEEEECC
T ss_pred cCCEEEEcCChHHHHHH-HHHHhcCCCCCEEEEEc
Confidence 89999999988643222 22222244443344433
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.012 Score=61.35 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=61.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-EEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.|+|+|.+|..+++.|. +.|++|+++|.++++.+.+.+.|... .. ++ ++++ +++|.|++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~~~~---~~---~~~~--~~~D~vi~ 63 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLR----------RRGHYLIGVSRQQSTCEKAVERQLVDEAG---QD---LSLL--QTAKIIFL 63 (279)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTSCSEEE---SC---GGGG--TTCSEEEE
T ss_pred EEEEEcCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHhCCCCcccc---CC---HHHh--CCCCEEEE
Confidence 4789999999999999998 78999999999999998888766531 11 12 3445 68999999
Q ss_pred EeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 612 MYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
+++.+. ...++..++. +.|+ .+++..
T Consensus 64 av~~~~-~~~~~~~l~~~~~~~-~~vv~~ 90 (279)
T 2f1k_A 64 CTPIQL-ILPTLEKLIPHLSPT-AIVTDV 90 (279)
T ss_dssp CSCHHH-HHHHHHHHGGGSCTT-CEEEEC
T ss_pred ECCHHH-HHHHHHHHHhhCCCC-CEEEEC
Confidence 998653 2233333333 3344 355544
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=61.97 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=53.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+++.|. + |++|+++|.++++.+.+.+.|.... + .++. ++++|.|+++
T Consensus 3 ~i~iiG~G~~G~~~a~~l~----------~-g~~V~~~~~~~~~~~~~~~~g~~~~--~--~~~~-----~~~~D~vi~~ 62 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLA----------R-RFPTLVWNRTFEKALRHQEEFGSEA--V--PLER-----VAEARVIFTC 62 (289)
T ss_dssp CEEEECCSTTHHHHHHHHH----------T-TSCEEEECSSTHHHHHHHHHHCCEE--C--CGGG-----GGGCSEEEEC
T ss_pred eEEEEcccHHHHHHHHHHh----------C-CCeEEEEeCCHHHHHHHHHCCCccc--C--HHHH-----HhCCCEEEEe
Confidence 5889999999999999998 8 9999999999999988877665542 1 2222 3579999999
Q ss_pred eCCHHH
Q 003861 613 YTDKKR 618 (791)
Q Consensus 613 ~~~d~~ 618 (791)
++++..
T Consensus 63 v~~~~~ 68 (289)
T 2cvz_A 63 LPTTRE 68 (289)
T ss_dssp CSSHHH
T ss_pred CCChHH
Confidence 998753
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0099 Score=62.43 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=70.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+++.|. +.|++|++.|.|+++.+.+.+.|.... .+..+.+ +++|.|+++
T Consensus 3 ~I~iiG~G~mG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~---~~~~~~~-----~~advvi~~ 64 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLV----------RAGFDVTVWNRNPAKCAPLVALGARQA---SSPAEVC-----AACDITIAM 64 (287)
T ss_dssp CEEEECCSTTHHHHHHHHH----------HHTCCEEEECSSGGGGHHHHHHTCEEC---SCHHHHH-----HHCSEEEEC
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCeec---CCHHHHH-----HcCCEEEEE
Confidence 6889999999999999998 789999999999999999888775431 1223333 357999999
Q ss_pred eCCHHHHHHHH---HHHHH-hCCCCcEEEEecC--hhh----HHHHHHCCCCeEEcC
Q 003861 613 YTDKKRTIEAV---QRLRL-AFPAIPIYARAQD--MMH----LLDLKKAGATDAILE 659 (791)
Q Consensus 613 ~~~d~~n~~~~---~~ar~-l~p~~~iiara~~--~~~----~~~L~~~Gad~Vi~p 659 (791)
++++...-.+. ..+.+ +.++ .+++-..+ +.. .+.+++.|+..+-.|
T Consensus 65 v~~~~~~~~v~~~~~~l~~~l~~g-~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pdu_A 65 LADPAAAREVCFGANGVLEGIGGG-RGYIDMSTVDDETSTAIGAAVTARGGRFLEAP 120 (287)
T ss_dssp CSSHHHHHHHHHSTTCGGGTCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCHHHHHHHHcCchhhhhcccCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 99864333322 11222 3344 44444333 222 234556677655433
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0034 Score=63.82 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|.| .|.+|+.+++.|. +.| ++|++++.+++..+.+...+..++.+|.+|++.++++ ++++|++
T Consensus 24 k~vlVtGatG~iG~~l~~~L~----------~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~v 92 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLA----------DKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQA-MQGQDIV 92 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHT----------TCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHH-HTTCSEE
T ss_pred cEEEEEeCCcHHHHHHHHHHH----------hCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHH-hcCCCEE
Confidence 4688898 5999999999998 788 8999999999887666566788999999999998875 4578988
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
|.+.+.+
T Consensus 93 v~~a~~~ 99 (236)
T 3qvo_A 93 YANLTGE 99 (236)
T ss_dssp EEECCST
T ss_pred EEcCCCC
Confidence 8776653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=59.57 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=59.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCC-CEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~-~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+.+. .++.+|.+ +++.+. ++++|+
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~----------~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~--~~~~D~ 87 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELK----------NKGHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHA--FASIDA 87 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGG--GTTCSE
T ss_pred CCeEEEECCCChHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHH--HcCCCE
Confidence 346889998 999999999998 789999999999999988888889 99999999 333333 348998
Q ss_pred EEEEeC
Q 003861 609 VMIMYT 614 (791)
Q Consensus 609 viv~~~ 614 (791)
+|-+.+
T Consensus 88 vi~~ag 93 (236)
T 3e8x_A 88 VVFAAG 93 (236)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 887765
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=61.63 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=67.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-------hhHHH---HHhcCCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-------SVVKE---SRKLGFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-------~~v~~---~~~~~~~~v~GD~t~~~~L~~ 600 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.++ ++.+. +.+.+..++.+|.+|++.+++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~ 72 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASI----------KAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVK 72 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHH----------hCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHH
Confidence 36899997 999999999998 7899999999986 54433 345789999999999999987
Q ss_pred cCCCCCcEEEEEeCCH--HHHHHHHHHHHHhC
Q 003861 601 AGITSPKAVMIMYTDK--KRTIEAVQRLRLAF 630 (791)
Q Consensus 601 agi~~a~~viv~~~~d--~~n~~~~~~ar~l~ 630 (791)
+ ++++|+||.+.+.. .....++..+++.+
T Consensus 73 ~-~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 73 A-IKQVDIVICAAGRLLIEDQVKIIKAIKEAG 103 (307)
T ss_dssp H-HTTCSEEEECSSSSCGGGHHHHHHHHHHHC
T ss_pred H-HhCCCEEEECCcccccccHHHHHHHHHhcC
Confidence 6 45789888877642 33344556677765
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0082 Score=63.08 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC------hhhHH---HHHhcCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN------PSVVK---ESRKLGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d------~~~v~---~~~~~~~~~v~GD~t~~~~L~~a 601 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+ +++.+ .+...+..++.+|.+|++.|+++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASL----------DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------hCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHH
Confidence 46999997 999999999998 789999999987 34433 33457899999999999999876
Q ss_pred CCCCCcEEEEEeCCH--HHHHHHHHHHHHhC
Q 003861 602 GITSPKAVMIMYTDK--KRTIEAVQRLRLAF 630 (791)
Q Consensus 602 gi~~a~~viv~~~~d--~~n~~~~~~ar~l~ 630 (791)
++++|+||.+.+.. .....++..+++.+
T Consensus 75 -~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 75 -VKNVDVVISTVGSLQIESQVNIIKAIKEVG 104 (308)
T ss_dssp -HHTCSEEEECCCGGGSGGGHHHHHHHHHHC
T ss_pred -HcCCCEEEECCcchhhhhHHHHHHHHHhcC
Confidence 45689888877643 23344556677765
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0049 Score=63.69 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhHHHHH----h--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKESR----K--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v~~~~----~--~~ 584 (791)
..+|+|+|.|.+|..+++.|. ..|. +++++|.|. .+++.+. + .+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La----------~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 100 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLA----------SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH 100 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeeCHHHHHHHHHHH----------HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC
Confidence 458999999999999999998 7887 899999998 5655443 2 23
Q ss_pred CC--EEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 FP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 ~~--~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
.. .+..+.++ +.+++. ++++|.||.++++.+.+..+...+++.+
T Consensus 101 ~~v~~~~~~~~~-~~~~~~-~~~~DvVi~~~d~~~~~~~l~~~~~~~~ 146 (249)
T 1jw9_B 101 IAITPVNALLDD-AELAAL-IAEHDLVLDCTDNVAVRNQLNAGCFAAK 146 (249)
T ss_dssp SEEEEECSCCCH-HHHHHH-HHTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeccCCH-hHHHHH-HhCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 33 33444543 333333 5689999999999888888888888875
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0071 Score=60.41 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=59.1
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHhcCCCCCcEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~agi~~a~~vi 610 (791)
+++|.| .|.+|+.+++.|. +.|++|++++.+++..+.. .+..++.+|.+| ++.++++ ++++|+||
T Consensus 2 ~ilItGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~-~~~~d~vi 68 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLS----------TTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQ-LHGMDAII 68 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHT----------TSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTT-TTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHH-HcCCCEEE
Confidence 478888 6999999999998 8899999999999875433 578899999999 9888865 56899998
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
-+.+.
T Consensus 69 ~~ag~ 73 (219)
T 3dqp_A 69 NVSGS 73 (219)
T ss_dssp ECCCC
T ss_pred ECCcC
Confidence 87764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=61.80 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=67.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh------hhHHH---HHhcCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP------SVVKE---SRKLGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~------~~v~~---~~~~~~~~v~GD~t~~~~L~~a 601 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.++ ++.+. +...+..++.+|.+|++.++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASL----------SFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHH----------HTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cEEEEEcCCchhHHHHHHHHH----------hCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHH
Confidence 46899996 999999999998 7899999999986 33332 3456899999999999999876
Q ss_pred CCCCCcEEEEEeCCH--HHHHHHHHHHHHhC
Q 003861 602 GITSPKAVMIMYTDK--KRTIEAVQRLRLAF 630 (791)
Q Consensus 602 gi~~a~~viv~~~~d--~~n~~~~~~ar~l~ 630 (791)
++.+|+|+.+.+.. .....++..+++.+
T Consensus 75 -~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g 104 (321)
T 3c1o_A 75 -LKQVDIVISALPFPMISSQIHIINAIKAAG 104 (321)
T ss_dssp -HTTCSEEEECCCGGGSGGGHHHHHHHHHHC
T ss_pred -HcCCCEEEECCCccchhhHHHHHHHHHHhC
Confidence 45689888877642 23344556666665
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.024 Score=59.86 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=75.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|. ..|.+|++.|.++++.+.+.+.|..++. .+.++++ ++++|.++
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~~-----~~~l~~~-l~~aDvVi 218 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFA----------ALGAKVKVGARESDLLARIAEMGMEPFH-----ISKAAQE-LRDVDVCI 218 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTSEEEE-----GGGHHHH-TTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeecC-----hhhHHHH-hcCCCEEE
Confidence 357999999999999999998 7899999999999887777666655431 1223332 46899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHHHHHCCCCeEEcCcH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~--~~~~~~L~~~Gad~Vi~p~~ 661 (791)
.+++....|- ...+.+.|+..++--++. ....+..++.|+..+..|..
T Consensus 219 ~~~p~~~i~~---~~l~~mk~~~~lin~ar~~~~~~~~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 219 NTIPALVVTA---NVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGL 268 (293)
T ss_dssp ECCSSCCBCH---HHHHHSCTTCEEEECSSTTCSBCHHHHHHHTCEEEECCCH
T ss_pred ECCChHHhCH---HHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCEEEECCCC
Confidence 9987632222 234455565444444432 22236677789876656654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.019 Score=62.50 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~agi~~a~~vi 610 (791)
.++.|+|+|.+|..+++.|. +.|++|++.|.++++++.+.+.|... .++ .+..+++ +++|.|+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e~~~~a--~~~DvVi 86 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLR----------KGGHECVVYDLNVNAVQALEREGIAG----ARSIEEFCAKL--VKPRVVW 86 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTTCBC----CSSHHHHHHHS--CSSCEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHCCCEE----eCCHHHHHhcC--CCCCEEE
Confidence 47999999999999999998 88999999999999999998876542 233 3344433 4569999
Q ss_pred EEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHCCCCeE
Q 003861 611 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDA 656 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~-l~p~~~iiara~~------~~~~~~L~~~Gad~V 656 (791)
++++++ ....+...+.. +.++ .+++-..+ .+..+.+++.|+..+
T Consensus 87 ~~vp~~-~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~v 137 (358)
T 4e21_A 87 LMVPAA-VVDSMLQRMTPLLAAN-DIVIDGGNSHYQDDIRRADQMRAQGITYV 137 (358)
T ss_dssp ECSCGG-GHHHHHHHHGGGCCTT-CEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred EeCCHH-HHHHHHHHHHhhCCCC-CEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence 999887 32223333333 3344 45554433 223345566677654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.017 Score=60.67 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=54.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~vi 610 (791)
.++.|+|+|.+|..+++.|. +.|++|.++|.++++.+.+.+.|... .++. +.+ +++|.|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~D~vi 66 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLL----------KAGYSLVVSDRNPEAIADVIAAGAET----ASTAKAIA-----EQCDVII 66 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEE----CSSHHHHH-----HHCSEEE
T ss_pred ceEEEECchHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHCCCee----cCCHHHHH-----hCCCEEE
Confidence 36999999999999999998 78999999999999999888776532 2333 333 3589999
Q ss_pred EEeCCHHH
Q 003861 611 IMYTDKKR 618 (791)
Q Consensus 611 v~~~~d~~ 618 (791)
++++++..
T Consensus 67 ~~v~~~~~ 74 (299)
T 1vpd_A 67 TMLPNSPH 74 (299)
T ss_dssp ECCSSHHH
T ss_pred EECCCHHH
Confidence 99987643
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.01 Score=59.27 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHH--HhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKES--RKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~--~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++++|.| .|.+|+.+++.|.+ +.|++|++++.+++ +.+.+ ...+..++.+|.+|++.++++ ++++|
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~---------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d 75 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLT---------YTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQA-VTNAE 75 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH---------HCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHH-HTTCS
T ss_pred EEEEEEeCCcHHHHHHHHHHHh---------cCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHH-HcCCC
Confidence 4589999 59999999999962 48999999999999 77766 456788999999999998875 35789
Q ss_pred EEEEEeCCH-HHHHHHHHHHHHhC
Q 003861 608 AVMIMYTDK-KRTIEAVQRLRLAF 630 (791)
Q Consensus 608 ~viv~~~~d-~~n~~~~~~ar~l~ 630 (791)
++|.+.+.. .....++..+++.+
T Consensus 76 ~vv~~ag~~n~~~~~~~~~~~~~~ 99 (221)
T 3r6d_A 76 VVFVGAMESGSDMASIVKALSRXN 99 (221)
T ss_dssp EEEESCCCCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCChhHHHHHHHHHhcC
Confidence 998877652 11233344445544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.01 Score=65.72 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=81.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---CcEEEEcCChhhHHHHHhc-------CCCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-------GFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvID~d~~~v~~~~~~-------~~~~v~GD~t~~~~L~~ag 602 (791)
+++|+|.|.+|+.+++.|. +.| .+|++.|.|+++.+++.+. ....+..|.+|++.++++
T Consensus 3 kVlIiGaGgiG~~ia~~L~----------~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~- 71 (405)
T 4ina_A 3 KVLQIGAGGVGGVVAHKMA----------MNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVAL- 71 (405)
T ss_dssp EEEEECCSHHHHHHHHHHH----------TCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH-
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHH-
Confidence 6899999999999999998 666 3899999999998776532 478889999998887765
Q ss_pred CC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE--ecCh-----------hhHHHHHHCCCCeEEcCc
Q 003861 603 IT--SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDM-----------MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 603 i~--~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar--a~~~-----------~~~~~L~~~Gad~Vi~p~ 660 (791)
++ ++|.||.+++.. .+..++..+.+.+ .+++-. ...+ +..+..++.|+..+....
T Consensus 72 l~~~~~DvVin~ag~~-~~~~v~~a~l~~g--~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G 141 (405)
T 4ina_A 72 INEVKPQIVLNIALPY-QDLTIMEACLRTG--VPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSG 141 (405)
T ss_dssp HHHHCCSEEEECSCGG-GHHHHHHHHHHHT--CCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCB
T ss_pred HHhhCCCEEEECCCcc-cChHHHHHHHHhC--CCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCC
Confidence 22 489888887653 3455566666665 344422 1111 456677888887665544
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.014 Score=62.61 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh----hhHH---HHHhcCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVK---ESRKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~----~~v~---~~~~~~~~~v~GD~t~~~~L~~agi 603 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.++ ++.+ .+.+.+..++.||.+|++.++++ +
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~----------~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~-~ 79 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASL----------DAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKI-L 79 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHH----------HTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH-H
T ss_pred CeEEEECCCcHHHHHHHHHHH----------HCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHH-H
Confidence 57999998 999999999998 7899999999876 4443 44567899999999999988875 3
Q ss_pred C--CCcEEEEEeCC--HHHHHHHHHHHHHhC
Q 003861 604 T--SPKAVMIMYTD--KKRTIEAVQRLRLAF 630 (791)
Q Consensus 604 ~--~a~~viv~~~~--d~~n~~~~~~ar~l~ 630 (791)
+ ++|+||.+.+. -.....++..+++.+
T Consensus 80 ~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 80 KEHEIDIVVSTVGGESILDQIALVKAMKAVG 110 (346)
T ss_dssp HHTTCCEEEECCCGGGGGGHHHHHHHHHHHC
T ss_pred hhCCCCEEEECCchhhHHHHHHHHHHHHHcC
Confidence 4 78988887764 244556667777776
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0046 Score=67.48 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=73.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|+|++|+.+++.|. +.|.+|++.|.|+++++++.+. +...+. .++.+. .++|.+
T Consensus 173 GktV~V~G~G~VG~~~A~~L~----------~~GakVvv~D~~~~~l~~~a~~~ga~~v~----~~~ll~----~~~DIv 234 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLN----------TEGAKLVVTDVNKAAVSAAVAEEGADAVA----PNAIYG----VTCDIF 234 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCCEECC----GGGTTT----CCCSEE
T ss_pred cCEEEEECchHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEEC----hHHHhc----cCCcEe
Confidence 357999999999999999998 8999999999999998876553 433221 122332 588988
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEE-EecC----hhhHHHHHHCCCCeEEcCcH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQD----MMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~~----~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.+...+..|.. .++.+. .++|+ .++. ++..+.|++.|+ ++.|..
T Consensus 235 ip~a~~~~I~~~---~~~~lg--~~iV~e~An~p~t~~ea~~~L~~~Gi--~~~Pd~ 284 (364)
T 1leh_A 235 APCALGAVLNDF---TIPQLK--AKVIAGSADNQLKDPRHGKYLHELGI--VYAPDY 284 (364)
T ss_dssp EECSCSCCBSTT---HHHHCC--CSEECCSCSCCBSSHHHHHHHHHHTC--EECCHH
T ss_pred eccchHHHhCHH---HHHhCC--CcEEEeCCCCCcccHHHHHHHHhCCC--EEecce
Confidence 776544333322 344553 45555 4554 366788999998 667774
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=62.21 Aligned_cols=92 Identities=24% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCC-EEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFP-ILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~-~v~GD~t~~~~L~~agi~~a~ 607 (791)
..++.|+|+|.+|..+++.|. +.|+ +|++.|.+++..+.+.+.|.. ....|. + +.-++++|
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~----------~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~---~---~~~~~~aD 96 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---A---KVEDFSPD 96 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT---T---GGGGGCCS
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH---H---HHhhccCC
Confidence 357999999999999999998 7888 999999999999998887753 122222 1 10246899
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEec
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQ 640 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~ 640 (791)
.||++++.+... .+...+.. +.|+ .+++-+.
T Consensus 97 vVilavp~~~~~-~vl~~l~~~l~~~-~iv~d~~ 128 (314)
T 3ggo_A 97 FVMLSSPVRTFR-EIAKKLSYILSED-ATVTDQG 128 (314)
T ss_dssp EEEECSCGGGHH-HHHHHHHHHSCTT-CEEEECC
T ss_pred EEEEeCCHHHHH-HHHHHHhhccCCC-cEEEECC
Confidence 999999876432 23333333 4555 4555443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=60.63 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=61.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|++|+.+++.|. +.|++ |.++|.++++.+++.+. +..+ .. +. ++ -++++|.|+
T Consensus 12 ~i~iiG~G~mG~~~a~~l~----------~~g~~~v~~~~~~~~~~~~~~~~~g~~~-~~---~~---~~-~~~~~Dvvi 73 (266)
T 3d1l_A 12 PIVLIGAGNLATNLAKALY----------RKGFRIVQVYSRTEESARELAQKVEAEY-TT---DL---AE-VNPYAKLYI 73 (266)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSHHHHHHHHHHTTCEE-ES---CG---GG-SCSCCSEEE
T ss_pred eEEEEcCCHHHHHHHHHHH----------HCCCeEEEEEeCCHHHHHHHHHHcCCce-eC---CH---HH-HhcCCCEEE
Confidence 6999999999999999998 67888 89999999999888765 5443 22 22 22 246899999
Q ss_pred EEeCCHHHHHHHHHHHHHhC-CCCcEEEEec
Q 003861 611 IMYTDKKRTIEAVQRLRLAF-PAIPIYARAQ 640 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~-p~~~iiara~ 640 (791)
++++++.. ..+...+++.. ++ .+++...
T Consensus 74 ~av~~~~~-~~v~~~l~~~~~~~-~ivv~~s 102 (266)
T 3d1l_A 74 VSLKDSAF-AELLQGIVEGKREE-ALMVHTA 102 (266)
T ss_dssp ECCCHHHH-HHHHHHHHTTCCTT-CEEEECC
T ss_pred EecCHHHH-HHHHHHHHhhcCCC-cEEEECC
Confidence 99988743 33333344332 44 4555443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.03 Score=60.61 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH--HHHHh-cCCCEEEcc-CCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRK-LGFPILYGD-ASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v--~~~~~-~~~~~v~GD-~t~~~~L~~agi~~ 605 (791)
.++++|.|. |.+|+.+++.|. +.|++|++++.+++.. +.+.+ .+..++.|| .+|++.++++ ++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~-~~~ 73 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAA----------AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTL-FEG 73 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHH-HTT
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHH-Hhc
Confidence 457899985 999999999998 7899999999988765 44443 367889999 9999999876 567
Q ss_pred CcEEEEEeCCH--HHH---HHHHHHHHHhC
Q 003861 606 PKAVMIMYTDK--KRT---IEAVQRLRLAF 630 (791)
Q Consensus 606 a~~viv~~~~d--~~n---~~~~~~ar~l~ 630 (791)
+|+|+...... ..| ..++..+++.+
T Consensus 74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g 103 (352)
T 1xgk_A 74 AHLAFINTTSQAGDEIAIGKDLADAAKRAG 103 (352)
T ss_dssp CSEEEECCCSTTSCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCcHHHHHHHHHHHHHHHcC
Confidence 89888665431 223 33445566665
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=64.06 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=74.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCC---CEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF---PILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~---~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++.|+|+|.+|..+++.|. +.|++|++.|.++++++.+.+.+. .+ .+-.+-++..+ .++++|.
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~g~~i-~~~~s~~e~v~--~l~~aDv 71 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKV-VGAQSLKEMVS--KLKKPRR 71 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSC-EECSSHHHHHH--TBCSSCE
T ss_pred CEEEEEChhHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhcccCCCce-eccCCHHHHHh--hccCCCE
Confidence 47999999999999999998 889999999999999999876532 22 11122233333 3568999
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecCh------hhHHHHHHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDM------MHLLDLKKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~------~~~~~L~~~Gad~Vi~p 659 (791)
|+++++++...-.+...+.. +.|+ .+++-..+. +..+.+++.|+..+=.|
T Consensus 72 Vil~Vp~~~~v~~vl~~l~~~L~~g-~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~p 128 (484)
T 4gwg_A 72 IILLVKAGQAVDDFIEKLVPLLDTG-DIIIDGGNSEYRDTTRRCRDLKAKGILFVGSG 128 (484)
T ss_dssp EEECSCSSHHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEecCChHHHHHHHHHHHHhcCCC-CEEEEcCCCCchHHHHHHHHHHhhccccccCC
Confidence 99999885332223333333 3344 455544432 23345667788665444
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.035 Score=63.10 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=74.2
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cC--CCEEEccCCCHH-HHHhcCCC
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPA-VLLSAGIT 604 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~--~~~v~GD~t~~~-~L~~agi~ 604 (791)
.+..++.|+|.|.+|..+++.|. +.|++|++.|.++++++++.+ .. ..+ .. .++++ ..+ +++
T Consensus 8 ~~~~~IgvIGlG~MG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~~~~~gi-~~-~~s~~e~v~--~l~ 73 (497)
T 2p4q_A 8 HMSADFGLIGLAVMGQNLILNAA----------DHGFTVCAYNRTQSKVDHFLANEAKGKSI-IG-ATSIEDFIS--KLK 73 (497)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSHHHHHHHHTTTTTSSE-EC-CSSHHHHHH--TSC
T ss_pred cCCCCEEEEeeHHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHcccccCCCe-EE-eCCHHHHHh--cCC
Confidence 46778999999999999999998 789999999999999998876 21 112 21 23333 222 456
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChh------hHHHHHHCCCCeEEcC
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMM------HLLDLKKAGATDAILE 659 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~------~~~~L~~~Gad~Vi~p 659 (791)
++|.|+++++++...-.++..+.. +.|+ .+++-..+-. -.+.+++.|+..+-.|
T Consensus 74 ~aDvVil~Vp~~~~v~~vl~~l~~~l~~g-~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 74 RPRKVMLLVKAGAPVDALINQIVPLLEKG-DIIIDGGNSHFPDSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHhCCCC-CEEEECCCCChhHHHHHHHHHHHcCCceeCCC
Confidence 799999999885433333333333 3344 4555443321 2334556677655343
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=60.57 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=79.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH--HHH-hcCCC-----EEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK--ESR-KLGFP-----ILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~--~~~-~~~~~-----~v~GD~t~~~~L~~a 601 (791)
.++.|+|.|.+|..++..|. ..|+ +|+++|.++++.+ ... +.+.. -+... ++.+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~----------~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~----- 71 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAA----------QRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-DDPE----- 71 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE-SCGG-----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC-CCHH-----
Confidence 47999999999999999998 6788 9999999998765 221 22221 11111 1322
Q ss_pred CCCCCcEEEEEeCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChhhHHHHH----HCCCCeEEcC-cH
Q 003861 602 GITSPKAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLDLK----KAGATDAILE-NA 661 (791)
Q Consensus 602 gi~~a~~viv~~~~d-----------~~n~----~~~~~ar~l~p~~~iiara~~~~~~~~L~----~~Gad~Vi~p-~~ 661 (791)
.++++|.|+++++.. ..|. .++..+++..|+..++.-.|-......+. ..+.++|+.. ..
T Consensus 72 ~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~~~~ 151 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTN 151 (319)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECTTH
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCCCHHHEeecccc
Confidence 356899999998432 1233 34555555667755554444334433333 3566788865 44
Q ss_pred HHHHHHHHHHHhhcCCCh
Q 003861 662 ETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~ 679 (791)
..+.++...+...+++++
T Consensus 152 l~~~r~~~~~a~~~~v~~ 169 (319)
T 1lld_A 152 LDSARLRFLIAQQTGVNV 169 (319)
T ss_dssp HHHHHHHHHHHHHHTCCG
T ss_pred HhHHHHHHHHHHHhCCCH
Confidence 444455554444445554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.014 Score=60.90 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=60.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCE-EEccCCCH-HHHHhcCCC-CCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPI-LYGDASRP-AVLLSAGIT-SPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~-v~GD~t~~-~~L~~agi~-~a~ 607 (791)
++.|+|+|.+|..+++.|. +.|+ +|+++|.++++.+.+++.|... .. ++. +. ++ ++|
T Consensus 3 ~I~iIG~G~mG~~~a~~l~----------~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~---~~~~~~-----~~~~aD 64 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEGT---TSIAKV-----EDFSPD 64 (281)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEEE---SCGGGG-----GGTCCS
T ss_pred EEEEEecCHHHHHHHHHHH----------hcCCCcEEEEEeCCHHHHHHHHHCCCccccc---CCHHHH-----hcCCCC
Confidence 5889999999999999998 7787 8999999999998888777541 12 222 22 34 899
Q ss_pred EEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 638 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~-l~p~~~iiar 638 (791)
.|+++++.+.. ..++..+.. +.++ .+++-
T Consensus 65 vVilavp~~~~-~~v~~~l~~~l~~~-~iv~~ 94 (281)
T 2g5c_A 65 FVMLSSPVRTF-REIAKKLSYILSED-ATVTD 94 (281)
T ss_dssp EEEECSCHHHH-HHHHHHHHHHSCTT-CEEEE
T ss_pred EEEEcCCHHHH-HHHHHHHHhhCCCC-cEEEE
Confidence 99999987633 233333333 4455 34443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.016 Score=62.50 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc-----------CCCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD-----------ASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD-----------~t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. +.|++|+++|.++++.+.+++.+...+.+. .++.+ +
T Consensus 5 mki~iiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 71 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLA----------LKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG---L 71 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH---H
T ss_pred CeEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHH---H
Confidence 37999999999999999998 789999999999999998877632222221 12332 1
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 003861 601 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 638 (791)
Q Consensus 601 agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiar 638 (791)
+ ++++|.|+++++++.. ..+...++. +.++..++..
T Consensus 72 ~-~~~~D~vi~~v~~~~~-~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 72 A-VKDADVILIVVPAIHH-ASIAANIASYISEGQLIILN 108 (359)
T ss_dssp H-HTTCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEES
T ss_pred H-HhcCCEEEEeCCchHH-HHHHHHHHHhCCCCCEEEEc
Confidence 1 3579999999988654 233333333 3445434444
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0078 Score=60.30 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=59.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+. .+..++.+|.+|++.++++ ++++|+||
T Consensus 5 ~~ilItGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~-~~~~d~vi 72 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEAL----------NRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEV-CKGADAVI 72 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHH----------TTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHH-HTTCSEEE
T ss_pred CEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHH-hcCCCEEE
Confidence 46899995 999999999998 88999999999988754432 5688999999999998875 35789888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
-+.+.
T Consensus 73 ~~a~~ 77 (227)
T 3dhn_A 73 SAFNP 77 (227)
T ss_dssp ECCCC
T ss_pred EeCcC
Confidence 87654
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.036 Score=58.08 Aligned_cols=88 Identities=9% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC---cEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~---~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++.|+|+|.+|..+++.|. +.|+ +|++.|.|+++.+++.+. |..+. .+..+. ++++|
T Consensus 4 ~~I~iIG~G~mG~aia~~l~----------~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~---~~~~~~-----~~~aD 65 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLI----------ANGYDPNRICVTNRSLDKLDFFKEKCGVHTT---QDNRQG-----ALNAD 65 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHH----------HTTCCGGGEEEECSSSHHHHHHHHTTCCEEE---SCHHHH-----HSSCS
T ss_pred CEEEEEcccHHHHHHHHHHH----------HCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 46999999999999999998 7788 899999999999988874 65432 122233 35799
Q ss_pred EEEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEe
Q 003861 608 AVMIMYTDKKRTIEAVQRLRL--AFPAIPIYARA 639 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~--l~p~~~iiara 639 (791)
.|++++..+. --.+...++. +.++ .+++..
T Consensus 66 vVilav~p~~-~~~vl~~l~~~~l~~~-~iiiS~ 97 (280)
T 3tri_A 66 VVVLAVKPHQ-IKMVCEELKDILSETK-ILVISL 97 (280)
T ss_dssp EEEECSCGGG-HHHHHHHHHHHHHTTT-CEEEEC
T ss_pred eEEEEeCHHH-HHHHHHHHHhhccCCC-eEEEEe
Confidence 9999986543 2233344444 4444 344443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.042 Score=62.25 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC--CCEEEccCCCH-HHHHhcCCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRP-AVLLSAGITSP 606 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~--~~~v~GD~t~~-~~L~~agi~~a 606 (791)
.+.++.|+|.|.+|..+++.|. +.|++|++.|.++++++.+.+.. ..+. . .+++ +..+ +++++
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La----------~~G~~V~v~~r~~~~~~~l~~~~~~~gi~-~-~~s~~e~v~--~l~~a 79 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIE----------SRGYTVSIFNRSREKTEEVIAENPGKKLV-P-YYTVKEFVE--SLETP 79 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSHHHHHHHHHHSTTSCEE-E-CSSHHHHHH--TBCSS
T ss_pred CCCeEEEEccHHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHhhCCCCCeE-E-eCCHHHHHh--CCCCC
Confidence 3567999999999999999998 88999999999999998887641 0121 1 2333 3332 34579
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChh------hHHHHHHCCCCeE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMM------HLLDLKKAGATDA 656 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~------~~~~L~~~Gad~V 656 (791)
|.|+++++++...-.++..+.. +.|+ .+++-..+-. -.+.+++.|+..+
T Consensus 80 DvVil~Vp~~~~v~~vl~~l~~~l~~g-~iIId~s~g~~~~t~~l~~~l~~~g~~~v 135 (480)
T 2zyd_A 80 RRILLMVKAGAGTDAAIDSLKPYLDKG-DIIIDGGNTFFQDTIRRNRELSAEGFNFI 135 (480)
T ss_dssp CEEEECSCSSSHHHHHHHHHGGGCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHCCCCee
Confidence 9999999884322223333333 3344 3555443321 2344555677654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.055 Score=57.47 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=80.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHh-cC---------CCEEEccCCCHHHHHh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK-LG---------FPILYGDASRPAVLLS 600 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~-~~---------~~~v~GD~t~~~~L~~ 600 (791)
++.|+|.|.+|..++..|. ..| .+|+++|.|+++.+.... .+ ..+.. +|.+
T Consensus 3 kI~VIGaG~~G~~la~~L~----------~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~d~~---- 65 (309)
T 1hyh_A 3 KIGIIGLGNVGAAVAHGLI----------AQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI---NDWA---- 65 (309)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE---SCGG----
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe---CCHH----
Confidence 5899999999999999997 667 799999999988766542 11 12212 2322
Q ss_pred cCCCCCcEEEEEeCCHH---------------HHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH---CCCCeE
Q 003861 601 AGITSPKAVMIMYTDKK---------------RTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK---AGATDA 656 (791)
Q Consensus 601 agi~~a~~viv~~~~d~---------------~n~----~~~~~ar~l~p~~~iiara~~~~~~--~~L~~---~Gad~V 656 (791)
.+++||.++++++... .|+ .++..+++..|+..++. ..|+.+. ..+++ ....+|
T Consensus 66 -~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~-~tNp~~~~~~~~~~~~~~~~~rv 143 (309)
T 1hyh_A 66 -ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV-ISNPVDVITALFQHVTGFPAHKV 143 (309)
T ss_dssp -GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGE
T ss_pred -HhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-EcCcHHHHHHHHHHhcCCCHHHE
Confidence 2478999999998754 243 34455555577765555 5655544 23444 344466
Q ss_pred EcC-cHHHHHHHHHHHHhhcCCChH
Q 003861 657 ILE-NAETSLQLGSKLLKGFGVMSD 680 (791)
Q Consensus 657 i~p-~~~~~~~la~~~l~~l~~~~~ 680 (791)
+-- ...-..++...+-+.+++++.
T Consensus 144 ig~gt~ld~~r~~~~~a~~l~~~~~ 168 (309)
T 1hyh_A 144 IGTGTLLDTARMQRAVGEAFDLDPR 168 (309)
T ss_dssp EECTTHHHHHHHHHHHHHHHTCCGG
T ss_pred eecCccchHHHHHHHHHHHhCCChh
Confidence 655 332233455455554555543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.011 Score=59.60 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=53.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|.+|+.+++.|. +.|++|+++|.++++.+.+.+.+..+. + ++++ ++++|.|++
T Consensus 29 ~~I~iiG~G~~G~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~-----~---~~~~-~~~~DvVi~ 89 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLV----------GSGFKVVVGSRNPKRTARLFPSAAQVT-----F---QEEA-VSSPEVIFV 89 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSHHHHHHHSBTTSEEE-----E---HHHH-TTSCSEEEE
T ss_pred CEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCcee-----c---HHHH-HhCCCEEEE
Confidence 47999999999999999998 789999999999999888877665542 1 2222 468999999
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
++..+
T Consensus 90 av~~~ 94 (215)
T 2vns_A 90 AVFRE 94 (215)
T ss_dssp CSCGG
T ss_pred CCChH
Confidence 98864
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0087 Score=65.74 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=77.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCC-CEEEccCCCHHHHHhcC----CC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDASRPAVLLSAG----IT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~-~~v~GD~t~~~~L~~ag----i~ 604 (791)
.+.+++|+|.|.+++.+++.+. ..|++|+++|..++.....+-.+. .++..++ .+.+.+.. ++
T Consensus 203 P~~rL~IfGAGhva~ala~~a~----------~lg~~V~v~D~R~~~~~~~~fp~a~~~~~~~p--~~~~~~~~~~~~~~ 270 (386)
T 2we8_A 203 PRPRMLVFGAIDFAAAVAQQGA----------FLGYRVTVCDARPVFATTARFPTADEVVVDWP--HRYLAAQAEAGAID 270 (386)
T ss_dssp CCCEEEEECCSTHHHHHHHHHH----------HTTCEEEEEESCTTTSCTTTCSSSSEEEESCH--HHHHHHHHHHTCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhcccccCCCceEEEeCCh--HHHHHhhccccCCC
Confidence 4568999999999999999998 899999999999885443332333 4555544 56676666 78
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH---HHHHHCCCC
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL---LDLKKAGAT 654 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~---~~L~~~Gad 654 (791)
.-++++++|.|.+....+...+-+...--+|=+--....+. +.|++.|.+
T Consensus 271 ~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~iGSrrk~~~~~~rL~~~G~~ 323 (386)
T 2we8_A 271 ARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLT 323 (386)
T ss_dssp TTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECChHhHHHHHHHHhcCCCCCEEEEecChhHHHHHHHHHHhCCCC
Confidence 88899999999777777666666553122444433333333 344556653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.02 Score=61.02 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=59.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+.+..++.+|.+|++.++++ ++++|+||-
T Consensus 15 ~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih 83 (342)
T 2x4g_A 15 KYAVLGATGLLGHHAARAIR----------AAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA-LRGLDGVIF 83 (342)
T ss_dssp EEEEESTTSHHHHHHHHHHH----------HTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHH-TTTCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHH-HcCCCEEEE
Confidence 6899995 999999999998 7899999999998876666656889999999999998876 457898876
Q ss_pred EeC
Q 003861 612 MYT 614 (791)
Q Consensus 612 ~~~ 614 (791)
+..
T Consensus 84 ~a~ 86 (342)
T 2x4g_A 84 SAG 86 (342)
T ss_dssp C--
T ss_pred CCc
Confidence 654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.015 Score=61.03 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++.|+|+ |.+|..+++.|. +.|++|+++|.++++.+.+.+.|..+ . +..+ -++++|.|+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~g~~~--~--~~~~-----~~~~aDvVi 72 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIH----------DSAHHLAAIEIAPEGRDRLQGMGIPL--T--DGDG-----WIDEADVVV 72 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HSSSEEEEECCSHHHHHHHHHTTCCC--C--CSSG-----GGGTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhcCCCc--C--CHHH-----HhcCCCEEE
Confidence 47999999 999999999998 78999999999999998888766432 1 1122 246799999
Q ss_pred EEeCCHHHHHHHHHHHHHh-CCCCcEEEEecCh
Q 003861 611 IMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDM 642 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~ 642 (791)
++++++.. ..+...++.. .|+ .+++...+-
T Consensus 73 ~av~~~~~-~~v~~~l~~~l~~~-~ivv~~s~~ 103 (286)
T 3c24_A 73 LALPDNII-EKVAEDIVPRVRPG-TIVLILDAA 103 (286)
T ss_dssp ECSCHHHH-HHHHHHHGGGSCTT-CEEEESCSH
T ss_pred EcCCchHH-HHHHHHHHHhCCCC-CEEEECCCC
Confidence 99987652 2333333332 334 455544443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.023 Score=60.72 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc---------CCCHHHHHh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD---------ASRPAVLLS 600 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD---------~t~~~~L~~ 600 (791)
...++.|+|.|.+|..++..|. +.|++|+++ .++++++.+++.|......+ .++.+ +
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~----------~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~---~ 83 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLA----------RAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS---A 83 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHH----------HTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG---G
T ss_pred cCCcEEEECcCHHHHHHHHHHH----------HCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH---H
Confidence 3457999999999999999998 789999999 99999999988775543111 12222 2
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-CCCCeEE
Q 003861 601 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDAI 657 (791)
Q Consensus 601 agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~-~Gad~Vi 657 (791)
++++|.+++++.... .-.++..++. +.|+..|+.-.+--++.+.+.+ .+ +.++
T Consensus 84 --~~~~D~vilavk~~~-~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~-~~vl 138 (318)
T 3hwr_A 84 --VQGADLVLFCVKSTD-TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE-QEVA 138 (318)
T ss_dssp --GTTCSEEEECCCGGG-HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC-SEEE
T ss_pred --cCCCCEEEEEccccc-HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC-CcEE
Confidence 368999999998763 2333333433 3445445656666666555544 45 5554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.014 Score=61.20 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=60.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-------------CCCE---------EE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-------------GFPI---------LY 589 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-------------~~~~---------v~ 589 (791)
+++.|+|.|.+|..+|+.|. +.|++|++.|.+++..+++.+. +... +.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~ 74 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTA----------FHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIR 74 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeE
Confidence 47999999999999999998 7899999999999998777643 1100 00
Q ss_pred ccCCCHHHHHhcCCCCCcEEEEEeCCHHHH-HHHHHHHHHh-CCCCcEEEEe
Q 003861 590 GDASRPAVLLSAGITSPKAVMIMYTDKKRT-IEAVQRLRLA-FPAIPIYARA 639 (791)
Q Consensus 590 GD~t~~~~L~~agi~~a~~viv~~~~d~~n-~~~~~~ar~l-~p~~~iiara 639 (791)
. .+| +++ .+++||.||.+..++.+. ..+...+.+. .|+ .+++..
T Consensus 75 ~-~~~---~~~-~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~-~il~s~ 120 (283)
T 4e12_A 75 Y-SDD---LAQ-AVKDADLVIEAVPESLDLKRDIYTKLGELAPAK-TIFATN 120 (283)
T ss_dssp E-ESC---HHH-HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTT-CEEEEC
T ss_pred E-eCC---HHH-HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCC-cEEEEC
Confidence 0 112 211 257899999999886322 2233334443 444 455543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0051 Score=61.16 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+. .+..++.+|.+|++. +. ++++|+||-
T Consensus 2 kvlVtGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~-~~--~~~~d~vi~ 67 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAK----------NRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTL-SD--LSDQNVVVD 67 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCH-HH--HTTCSEEEE
T ss_pred eEEEEcCCchhHHHHHHHHH----------hCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhh-hh--hcCCCEEEE
Confidence 4789995 999999999998 78999999999999887766 789999999999887 33 367898888
Q ss_pred EeCC
Q 003861 612 MYTD 615 (791)
Q Consensus 612 ~~~~ 615 (791)
+.+.
T Consensus 68 ~ag~ 71 (221)
T 3ew7_A 68 AYGI 71 (221)
T ss_dssp CCCS
T ss_pred CCcC
Confidence 7754
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.021 Score=61.07 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCCh-------hhHHHHHhcCCCEEEccCCCHHHHHhc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNP-------SVVKESRKLGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~-------~~v~~~~~~~~~~v~GD~t~~~~L~~a 601 (791)
+..++.|+|+|.+|..+++.|. +.| ++|++.|.++ +..+++.+.|. .. .+..+.
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~----------~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~---~~-~s~~e~---- 84 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLG----------GRNAARLAAYDLRFNDPAASGALRARAAELGV---EP-LDDVAG---- 84 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHH----------TTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC---EE-ESSGGG----
T ss_pred cCCeEEEECccHHHHHHHHHHH----------HcCCCeEEEEeCCCccccchHHHHHHHHHCCC---CC-CCHHHH----
Confidence 3457999999999999999998 889 9999999998 56666666665 11 022233
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC--hhh----HHHHHHCCCCe
Q 003861 602 GITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD--MMH----LLDLKKAGATD 655 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~--~~~----~~~L~~~Gad~ 655 (791)
++++|.|+++++++...-. +..+.+ +.|+ .+++-..+ +.. .+.+++.|+..
T Consensus 85 -~~~aDvVi~avp~~~~~~~-~~~i~~~l~~~-~ivv~~st~~p~~~~~~~~~l~~~g~~~ 142 (317)
T 4ezb_A 85 -IACADVVLSLVVGAATKAV-AASAAPHLSDE-AVFIDLNSVGPDTKALAAGAIATGKGSF 142 (317)
T ss_dssp -GGGCSEEEECCCGGGHHHH-HHHHGGGCCTT-CEEEECCSCCHHHHHHHHHHHHTSSCEE
T ss_pred -HhcCCEEEEecCCHHHHHH-HHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 3568999999887643322 233322 3344 45544332 222 23455556654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=62.81 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCC-CHHHHH--hcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS-RPAVLL--SAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t-~~~~L~--~agi~~a~~ 608 (791)
.++.|+|.|.+|..++..|. .|.+|.+++.++++.+.+++.|..... +.. .+.... ..-.+.+|.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-----------~g~~V~~~~r~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~~~~~~~~D~ 70 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-----------LYHDVTVVTRRQEQAAAIQSEGIRLYK-GGEEFRADCSADTSINSDFDL 70 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-----------TTSEEEEECSCHHHHHHHHHHCEEEEE-TTEEEEECCEEESSCCSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHh-----------cCCceEEEECCHHHHHHHHhCCceEec-CCCeecccccccccccCCCCE
Confidence 36899999999999999994 688999999999999888887766542 211 000000 123578999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHC-CCCeEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA-GATDAI 657 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~-Gad~Vi 657 (791)
+++++.... .-.++..++...++. |+.-.|--.+.+.+++. |.+.|+
T Consensus 71 vilavK~~~-~~~~l~~l~~~~~~~-ivs~~nGi~~~e~l~~~~~~~~vl 118 (307)
T 3ego_A 71 LVVTVKQHQ-LQSVFSSLERIGKTN-ILFLQNGMGHIHDLKDWHVGHSIY 118 (307)
T ss_dssp EEECCCGGG-HHHHHHHTTSSCCCE-EEECCSSSHHHHHHHTCCCSCEEE
T ss_pred EEEEeCHHH-HHHHHHHhhcCCCCe-EEEecCCccHHHHHHHhCCCCcEE
Confidence 999987642 222333344444444 77777777777778776 666654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.025 Score=63.58 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=75.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|+|.|.+|+.+++.|. +.|.+|++.|.++++.+.+.+. +...+.+|.+|.+.++++ ++++|.|
T Consensus 4 k~VlViGaG~iG~~ia~~L~----------~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~-l~~~DvV 72 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLT----------DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE-VAKHDLV 72 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------TTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHH-HTTSSEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHH-HcCCcEE
Confidence 46889999999999999998 7889999999999988876543 355788999998877654 3589999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHCCCCeE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDA 656 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~----~~~~~~~L~~~Gad~V 656 (791)
|.+++..... .+...+-+. +.+++.... .....+..+++|+..+
T Consensus 73 In~a~~~~~~-~i~~a~l~~--g~~vvd~~~~~~~~~~l~~aA~~aGv~~i 120 (450)
T 1ff9_A 73 ISLIPYTFHA-TVIKSAIRQ--KKHVVTTSYVSPAMMELDQAAKDAGITVM 120 (450)
T ss_dssp EECCC--CHH-HHHHHHHHH--TCEEEESSCCCHHHHHTHHHHHHTTCEEE
T ss_pred EECCccccch-HHHHHHHhC--CCeEEEeecccHHHHHHHHHHHHCCCeEE
Confidence 9988764221 122222222 245554432 1233455577888643
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.019 Score=59.27 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=51.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|..+++.|. +.|++|++.|. +++..+++.+.|.. .+..+.+ +++|.|+
T Consensus 2 ~I~iIG~G~mG~~la~~l~----------~~g~~V~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~-----~~aDvvi 61 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLR----------SRGVEVVTSLEGRSPSTIERARTVGVT-----ETSEEDV-----YSCPVVI 61 (264)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCEEEECCTTCCHHHHHHHHHHTCE-----ECCHHHH-----HTSSEEE
T ss_pred eEEEEechHHHHHHHHHHH----------HCCCeEEEeCCccCHHHHHHHHHCCCc-----CCHHHHH-----hcCCEEE
Confidence 4789999999999999998 78999999888 77888888776654 2223333 4789999
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++++++.
T Consensus 62 ~~v~~~~ 68 (264)
T 1i36_A 62 SAVTPGV 68 (264)
T ss_dssp ECSCGGG
T ss_pred EECCCHH
Confidence 9998764
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.026 Score=61.28 Aligned_cols=110 Identities=18% Similarity=0.110 Sum_probs=80.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-EEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-ILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.+++|+|.|.+++.+++.+. ..|++|+++|..++.....+=.+.. ++.+++ ++.+++..+..-++
T Consensus 198 p~~~L~I~GaGhva~aLa~la~----------~lgf~V~v~D~R~~~~~~~~fp~a~~v~~~~p--~~~~~~~~~~~~t~ 265 (362)
T 3on5_A 198 PKERLIIFGAGPDVPPLVTFAS----------NVGFYTVVTDWRPNQCEKHFFPDADEIIVDFP--ADFLRKFLIRPDDF 265 (362)
T ss_dssp CCEEEEEECCSTTHHHHHHHHH----------HHTEEEEEEESCGGGGCGGGCTTCSEEEESCH--HHHHHHSCCCTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEECCCccccccccCCCceEEecCCH--HHHHhhcCCCCCeE
Confidence 3568999999999999999998 7899999999999876544433443 555544 56788888999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Ga 653 (791)
++++|-|......+...+-+. +..-|.-.-+....++|.+.|.
T Consensus 266 vvv~TH~h~~D~~~L~~aL~~--~~~YiG~iGSr~R~~rl~~~g~ 308 (362)
T 3on5_A 266 VLIMTHHFQKDQEILHFLLEK--ELRYIGILGSKERTRRLLQNRK 308 (362)
T ss_dssp EEECCSCHHHHHHHHHHHSSS--CCSEEEESSCHHHHHHHHTSCC
T ss_pred EEEEeCCchhhHHHHHHHhcC--CCCEEEEeCCHHHHHHHHhcCC
Confidence 999998865555555555443 3555666666666667776654
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.038 Score=60.10 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-cc---------CCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-GD---------ASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-GD---------~t~~~~L~~ 600 (791)
..++.|+|.|.+|..++..|. +.|++|.++|.|+++++.+++.+.+..+ .+ .+|. ++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La----------~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~---~e 95 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLA----------RKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDL---KA 95 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCH---HH
T ss_pred CCeEEEECccHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCH---HH
Confidence 347999999999999999998 8899999999999999988765432110 00 0222 11
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEec
Q 003861 601 AGITSPKAVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQ 640 (791)
Q Consensus 601 agi~~a~~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~ 640 (791)
+ ++++|.++++++... --.++..++.. .|+..++.-.+
T Consensus 96 a-~~~aDvVilaVp~~~-~~~vl~~i~~~l~~~~ivvs~~k 134 (356)
T 3k96_A 96 S-LEGVTDILIVVPSFA-FHEVITRMKPLIDAKTRIAWGTK 134 (356)
T ss_dssp H-HTTCCEEEECCCHHH-HHHHHHHHGGGCCTTCEEEECCC
T ss_pred H-HhcCCEEEECCCHHH-HHHHHHHHHHhcCCCCEEEEEeC
Confidence 1 367999999998652 22333334433 34433444333
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.041 Score=56.61 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.|+|+|.+|+.+++.|. +.|++|.+.|.++++.+.+.+. |..+ .++.+.+- +++|.|++
T Consensus 5 ~i~iiG~G~mG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~----~~~D~Vi~ 66 (259)
T 2ahr_A 5 KIGIIGVGKMASAIIKGLK----------QTPHELIISGSSLERSKEIAEQLALPY----AMSHQDLI----DQVDLVIL 66 (259)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSSCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHH----HTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHH----hcCCEEEE
Confidence 6899999999999999998 7789999999999998887753 6542 23333221 37899999
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+++.+
T Consensus 67 ~v~~~ 71 (259)
T 2ahr_A 67 GIKPQ 71 (259)
T ss_dssp CSCGG
T ss_pred EeCcH
Confidence 99843
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.035 Score=56.85 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC----cEEEEcCChhhHHHHHh-cCCCEEEccCCC-HHHHHhcCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAFDLNPSVVKESRK-LGFPILYGDASR-PAVLLSAGITS 605 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~----~vvvID~d~~~v~~~~~-~~~~~v~GD~t~-~~~L~~agi~~ 605 (791)
.++.|+|+|.+|..+++.|. +.|+ +|.+.|.++++.+++.+ .|..+ .++ .+.+ ++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~----------~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~-----~~ 63 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMI----------NKNIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVA-----KN 63 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHH-----HH
T ss_pred CeEEEECccHHHHHHHHHHH----------hCCCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHH-----Hh
Confidence 46999999999999999998 7887 99999999999988865 46543 223 3334 35
Q ss_pred CcEEEEEeCCH
Q 003861 606 PKAVMIMYTDK 616 (791)
Q Consensus 606 a~~viv~~~~d 616 (791)
+|.|+++++.+
T Consensus 64 aDvVilav~~~ 74 (247)
T 3gt0_A 64 ADILILSIKPD 74 (247)
T ss_dssp CSEEEECSCTT
T ss_pred CCEEEEEeCHH
Confidence 89899888553
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.027 Score=56.92 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++++|.| .|.+|+.+++.|. +. |++|++++.+++..+.+ ..+..++.+|.+|++.++++ ++++|.
T Consensus 5 ~~ilVtGasG~iG~~l~~~l~----------~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~-~~~~d~ 72 (253)
T 1xq6_A 5 PTVLVTGASGRTGQIVYKKLK----------EGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPA-FQGIDA 72 (253)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHH-HTTCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------hcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHH-HcCCCE
Confidence 4688888 5999999999998 66 89999999999877655 45688999999999988875 356888
Q ss_pred EEEEeC
Q 003861 609 VMIMYT 614 (791)
Q Consensus 609 viv~~~ 614 (791)
+|-+.+
T Consensus 73 vi~~a~ 78 (253)
T 1xq6_A 73 LVILTS 78 (253)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 876543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.04 Score=55.47 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.|+|+|.+|..+++.|. +.|++|++ .|.++++.+++.+ .+..... ++.+. ++++|.+
T Consensus 24 mkI~IIG~G~mG~~la~~l~----------~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~---~~~~~-----~~~aDvV 85 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFT----------AAQIPAIIANSRGPASLSSVTDRFGASVKA---VELKD-----ALQADVV 85 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHH----------HTTCCEEEECTTCGGGGHHHHHHHTTTEEE---CCHHH-----HTTSSEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCCHHHHHHHHHHhCCCccc---ChHHH-----HhcCCEE
Confidence 47999999999999999998 78999999 9999999888654 4655543 23333 3678999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+++++.+
T Consensus 86 ilavp~~ 92 (220)
T 4huj_A 86 ILAVPYD 92 (220)
T ss_dssp EEESCGG
T ss_pred EEeCChH
Confidence 9998754
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.029 Score=57.82 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=50.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|.|.+|..+++.|. +.| ++|.++|.++++.+.+.+. |..+ ..|.. + -+ ++|.|+
T Consensus 2 ~i~iiG~G~mG~~~a~~l~----------~~g~~~v~~~~r~~~~~~~~~~~~g~~~-~~~~~------~-~~-~~D~vi 62 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLV----------KQGGYRIYIANRGAEKRERLEKELGVET-SATLP------E-LH-SDDVLI 62 (263)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHCSCEEEEECSSHHHHHHHHHHTCCEE-ESSCC------C-CC-TTSEEE
T ss_pred EEEEECchHHHHHHHHHHH----------HCCCCeEEEECCCHHHHHHHHHhcCCEE-eCCHH------H-Hh-cCCEEE
Confidence 4789999999999999998 778 9999999999999888764 6543 33322 1 24 789999
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
++++
T Consensus 63 ~~v~ 66 (263)
T 1yqg_A 63 LAVK 66 (263)
T ss_dssp ECSC
T ss_pred EEeC
Confidence 9998
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.032 Score=58.53 Aligned_cols=139 Identities=20% Similarity=0.280 Sum_probs=81.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~viv 611 (791)
++.|+|+|.+|..+++.|. +.|++|++.|.++++.+.+.+.|..+ .++. +.+ +++|.|++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~Dvvi~ 62 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLM----------KHGYPLIIYDVFPDACKEFQDAGEQV----VSSPADVA-----EKADRIIT 62 (296)
T ss_dssp CEEEECCSTTHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHTTTCEE----CSSHHHHH-----HHCSEEEE
T ss_pred eEEEEeccHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHHH-----hcCCEEEE
Confidence 5889999999999999998 78999999999999999888776543 1233 333 35799999
Q ss_pred EeCCHHHHHHHHHHHH----HhCCCCcEEEEecChhh--H----HHHHHCCCCeEEcCcHHHHHHHHHHH--HhhcCCCh
Q 003861 612 MYTDKKRTIEAVQRLR----LAFPAIPIYARAQDMMH--L----LDLKKAGATDAILENAETSLQLGSKL--LKGFGVMS 679 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar----~l~p~~~iiara~~~~~--~----~~L~~~Gad~Vi~p~~~~~~~la~~~--l~~l~~~~ 679 (791)
+++++...-.+....+ .+.++ .+++....-.. . +.+.+.|...+-.|. ..+..-+..- .-..+.++
T Consensus 63 ~vp~~~~~~~v~~~~~~~~~~l~~~-~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~-~~g~~~a~~~~~~~~~~~~~ 140 (296)
T 2gf2_A 63 MLPTSINAIEAYSGANGILKKVKKG-SLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV-SGGVGAARSGNLTFMVGGVE 140 (296)
T ss_dssp CCSSHHHHHHHHHSTTSGGGTCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE-ESHHHHHHHTCEEEEEESCG
T ss_pred eCCCHHHHHHHHhCchhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCC-CCChhHHhcCcEEEEeCCCH
Confidence 9876544333332221 22344 35554543222 2 224445654443343 2222211110 00113345
Q ss_pred HHHHHHHHHHhcc
Q 003861 680 DDVTFLRQLVRNS 692 (791)
Q Consensus 680 ~~~~~l~~~~~~~ 692 (791)
+..+.+.++++.-
T Consensus 141 ~~~~~v~~l~~~~ 153 (296)
T 2gf2_A 141 DEFAAAQELLGCM 153 (296)
T ss_dssp GGHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 5667776666653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.02 Score=53.39 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCH-HHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRP-AVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~-~~L~~agi~~a~~ 608 (791)
.+++.|+|.|.+|+.+++.|. +.|.++++.|.++++.+.+. +.+..+. +..+. +.+ +++|.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~----------~~g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~-----~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFS----------YPQYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLI-----KNNDV 83 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCC----------TTTCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHH-----HTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHh-----cCCCE
Confidence 558999999999999999998 78889999999999987754 4454333 22332 222 46899
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
++.+++.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99999875
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.028 Score=60.60 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=52.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++.|+|+|.+|..+++.|. +.|++|++.|.+++. .+.+.+.|..+. +.++.+ +++|.|+
T Consensus 17 ~~I~IIG~G~mG~alA~~L~----------~~G~~V~~~~~~~~~~~~~a~~~G~~~~----~~~e~~-----~~aDvVi 77 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLK----------DSGVDVTVGLRSGSATVAKAEAHGLKVA----DVKTAV-----AAADVVM 77 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHH----------HTTCCEEEECCTTCHHHHHHHHTTCEEE----CHHHHH-----HTCSEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------HCcCEEEEEECChHHHHHHHHHCCCEEc----cHHHHH-----hcCCEEE
Confidence 46999999999999999998 789999999998876 566677776432 222333 4789999
Q ss_pred EEeCCHHH
Q 003861 611 IMYTDKKR 618 (791)
Q Consensus 611 v~~~~d~~ 618 (791)
++++++..
T Consensus 78 lavp~~~~ 85 (338)
T 1np3_A 78 ILTPDEFQ 85 (338)
T ss_dssp ECSCHHHH
T ss_pred EeCCcHHH
Confidence 99887543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.074 Score=56.80 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=81.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHh---cCC-----CEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRK---LGF-----PILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~---~~~-----~~v~GD~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. ..|+ +|+++|.|+++++.... .+. .-+.. +|.+ .
T Consensus 2 kI~VIGaG~~G~~la~~l~----------~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~~-----~ 64 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALL----------MKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDYA-----D 64 (319)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCGG-----G
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CCHH-----H
Confidence 5789999999999999998 6777 99999999988766432 111 11222 3332 2
Q ss_pred CCCCcEEEEEeCCHH-----------HH----HHHHHHHHHhCCCCcEEEEecChhhH--HHHHHC---CCCeEEcC-cH
Q 003861 603 ITSPKAVMIMYTDKK-----------RT----IEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKA---GATDAILE-NA 661 (791)
Q Consensus 603 i~~a~~viv~~~~d~-----------~n----~~~~~~ar~l~p~~~iiara~~~~~~--~~L~~~---Gad~Vi~p-~~ 661 (791)
+++||.||++.+... .| ..++..+++..|+..++. +.|+... ..+.+. ..++|+-- ..
T Consensus 65 ~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~-~tNp~~~~~~~~~~~~~~~~~rviG~~t~ 143 (319)
T 1a5z_A 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV-VTNPVDVLTYFFLKESGMDPRKVFGSGTV 143 (319)
T ss_dssp GTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHTCCTTTEEECTTH
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eCCcHHHHHHHHHHHhCCChhhEEeeCcc
Confidence 578999999987521 12 234555666678766555 4554443 333333 45567643 33
Q ss_pred HHHHHHHHHHHhhcCCChHH
Q 003861 662 ETSLQLGSKLLKGFGVMSDD 681 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~~~ 681 (791)
+-..++...+-+.+++++..
T Consensus 144 ld~~r~~~~la~~lgv~~~~ 163 (319)
T 1a5z_A 144 LDTARLRTLIAQHCGFSPRS 163 (319)
T ss_dssp HHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHhCcCHHH
Confidence 33455555666666666643
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.024 Score=59.46 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=52.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|+.+++.|. +.|++|+++| ++++.+.+.+.|... .++.+-+ ++++|.|+++
T Consensus 5 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~-~~~~~~~~~~~g~~~----~~~~~~~----~~~~D~vi~~ 65 (295)
T 1yb4_A 5 KLGFIGLGIMGSPMAINLA----------RAGHQLHVTT-IGPVADELLSLGAVN----VETARQV----TEFADIIFIM 65 (295)
T ss_dssp EEEECCCSTTHHHHHHHHH----------HTTCEEEECC-SSCCCHHHHTTTCBC----CSSHHHH----HHTCSEEEEC
T ss_pred EEEEEccCHHHHHHHHHHH----------hCCCEEEEEc-CHHHHHHHHHcCCcc----cCCHHHH----HhcCCEEEEE
Confidence 6899999999999999998 7899999999 999988887766432 2233221 2468999999
Q ss_pred eCCHHH
Q 003861 613 YTDKKR 618 (791)
Q Consensus 613 ~~~d~~ 618 (791)
++++..
T Consensus 66 vp~~~~ 71 (295)
T 1yb4_A 66 VPDTPQ 71 (295)
T ss_dssp CSSHHH
T ss_pred CCCHHH
Confidence 987654
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.076 Score=60.13 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=70.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHH-HHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPA-VLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~-~L~~agi~~a 606 (791)
++.|+|.|.+|+.++..|. +.|++|.+.|.++++++.+.+ .+... .++.+ ..+ .++++
T Consensus 4 ~IgvIG~G~mG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~----~~~~~e~v~--~l~~a 67 (482)
T 2pgd_A 4 DIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKVLG----AHSLEEMVS--KLKKP 67 (482)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSCEE----CSSHHHHHH--HBCSS
T ss_pred eEEEEChHHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHhccccCCCeEE----eCCHHHHHh--hccCC
Confidence 6899999999999999998 789999999999999998876 33221 23333 222 23589
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEec-Ch-----hhHHHHHHCCCCeEEcC
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQ-DM-----MHLLDLKKAGATDAILE 659 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~-~~-----~~~~~L~~~Gad~Vi~p 659 (791)
|.|+++++++...-.++..+.. +.|+ .+++-.. .. +-.+.+.+.|+..+-.|
T Consensus 68 DvVilaVp~~~~v~~vl~~l~~~l~~g-~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p 126 (482)
T 2pgd_A 68 RRIILLVKAGQAVDNFIEKLVPLLDIG-DIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG 126 (482)
T ss_dssp CEEEECSCTTHHHHHHHHHHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeCCChHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence 9999999885333333333433 4455 3444442 22 12334555676655444
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0072 Score=63.11 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=63.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCC--C-E-EEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF--P-I-LYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~--~-~-v~GD~t~~~~L~~agi~~a~~ 608 (791)
++.|+|.|.+|..++..|. +.|++|+++|.++++.+.+...+. . . .....++++.+ +++|.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~----------~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~d~ 66 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALC----------KQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-----ATSDL 66 (291)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-----HTCSE
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCcccc-----CCCCE
Confidence 4789999999999999998 789999999999887654433221 0 0 11112344443 46899
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~ 650 (791)
+++++.++.. ..+...++. +.|+..++.-.+.....+.+.+
T Consensus 67 vi~~v~~~~~-~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~ 108 (291)
T 1ks9_A 67 LLVTLKAWQV-SDAVKSLASTLPVTTPILLIHNGMGTIEELQN 108 (291)
T ss_dssp EEECSCGGGH-HHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT
T ss_pred EEEEecHHhH-HHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH
Confidence 9999988643 333333443 3445445555554444444443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=66.53 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.++ ..|.+|+++|.++++.+.+++.|..++ +.+ ++ ++++|.++
T Consensus 274 GktV~IiG~G~IG~~~A~~lk----------a~Ga~Viv~d~~~~~~~~A~~~Ga~~~-----~l~---e~-l~~aDvVi 334 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMK----------GQGARVSVTEIDPINALQAMMEGFDVV-----TVE---EA-IGDADIVV 334 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC-----CHH---HH-GGGCSEEE
T ss_pred cCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCEEe-----cHH---HH-HhCCCEEE
Confidence 457999999999999999998 789999999999999888888887532 222 22 46899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+++++. +.-...++.+.|+..++-
T Consensus 335 ~atgt~~--~i~~~~l~~mk~ggilvn 359 (494)
T 3ce6_A 335 TATGNKD--IIMLEHIKAMKDHAILGN 359 (494)
T ss_dssp ECSSSSC--SBCHHHHHHSCTTCEEEE
T ss_pred ECCCCHH--HHHHHHHHhcCCCcEEEE
Confidence 8887653 111244555666655443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.049 Score=57.84 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~vi 610 (791)
.++.|+|+|.+|..+++.|. +.|++|+++|.++++.+.+.+.|..+ .++. +.+ +++|.|+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~----------~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~-----~~~DvVi 91 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLL----------KMGHTVTVWNRTAEKCDLFIQEGARL----GRTPAEVV-----STCDITF 91 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSGGGGHHHHHTTCEE----CSCHHHHH-----HHCSEEE
T ss_pred CeEEEEcccHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHcCCEE----cCCHHHHH-----hcCCEEE
Confidence 57999999999999999998 78999999999999998888766542 1222 333 4689999
Q ss_pred EEeCCHHHHHH
Q 003861 611 IMYTDKKRTIE 621 (791)
Q Consensus 611 v~~~~d~~n~~ 621 (791)
++++++...-.
T Consensus 92 ~av~~~~~~~~ 102 (316)
T 2uyy_A 92 ACVSDPKAAKD 102 (316)
T ss_dssp ECCSSHHHHHH
T ss_pred EeCCCHHHHHH
Confidence 99997654333
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.031 Score=63.06 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++++|+|.|.+|+.+++.|. +. +.+|+++|.++++.+.+.+ .+...+..|.+|.+.++++ ++++|.|
T Consensus 24 k~VlIiGAGgiG~aia~~L~----------~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~-l~~~DvV 92 (467)
T 2axq_A 24 KNVLLLGSGFVAQPVIDTLA----------ANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKV-LADNDVV 92 (467)
T ss_dssp EEEEEECCSTTHHHHHHHHH----------TSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHH-HHTSSEE
T ss_pred CEEEEECChHHHHHHHHHHH----------hCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHH-HcCCCEE
Confidence 36999999999999999998 55 7899999999999887764 3666788999998877653 3579999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
|.+++..
T Consensus 93 In~tp~~ 99 (467)
T 2axq_A 93 ISLIPYT 99 (467)
T ss_dssp EECSCGG
T ss_pred EECCchh
Confidence 9888864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.048 Score=57.95 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE--ccC--------CCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDA--------SRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~--GD~--------t~~~~L~~a 601 (791)
.++.|+|.|.+|..++..|. +.|++|++++.++ .+.+++.|..... |+. ++++ +
T Consensus 3 mkI~IiGaGaiG~~~a~~L~----------~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~---~- 66 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQ----------RSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPE---E- 66 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHH----------HTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHH---H-
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHH---H-
Confidence 36899999999999999998 7899999999987 3777777765443 111 2333 2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-CCCCeE
Q 003861 602 GITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDA 656 (791)
Q Consensus 602 gi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~-~Gad~V 656 (791)
++.+|.|++++...... .++..++. +.|+..|+.-++--++.+.+.+ .+.+.|
T Consensus 67 -~~~~D~vilavk~~~~~-~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~~~v 121 (312)
T 3hn2_A 67 -IGPMDLVLVGLKTFANS-RYEELIRPLVEEGTQILTLQNGLGNEEALATLFGAERI 121 (312)
T ss_dssp -HCCCSEEEECCCGGGGG-GHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCGGGE
T ss_pred -cCCCCEEEEecCCCCcH-HHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCCCcE
Confidence 35899999998764322 23344444 3555556666666665666544 354433
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.014 Score=61.84 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=66.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCC-----C-CcEEEEcCChhhHHHHHh-cCCCEEE--cc-------C-CCH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV-----G-WPFVAFDLNPSVVKESRK-LGFPILY--GD-------A-SRP 595 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-----g-~~vvvID~d~~~v~~~~~-~~~~~v~--GD-------~-t~~ 595 (791)
++.|+|.|.+|..++..|. +. | ++|+++|. +++.+.+++ .|..+.. |+ + ++.
T Consensus 10 ~I~iiG~G~mG~~~a~~L~----------~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 78 (317)
T 2qyt_A 10 KIAVFGLGGVGGYYGAMLA----------LRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP 78 (317)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH
T ss_pred EEEEECcCHHHHHHHHHHH----------hCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc
Confidence 6999999999999999998 66 8 99999998 888888887 6765432 11 0 233
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 650 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~ 650 (791)
+. ++++|.+++++.++.. ..++..++. +.|+..|+.-.+...+.+.+++
T Consensus 79 ~~-----~~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~ 128 (317)
T 2qyt_A 79 AE-----VGTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADIAERMRT 128 (317)
T ss_dssp HH-----HCCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT
T ss_pred cc-----cCCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH
Confidence 32 3689999999987643 223333333 2333334444555555455543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.013 Score=64.95 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=60.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|++|+.+|+.++ ..|.+|++.|.||.+...+...|+.++. -++.+ +++|.++
T Consensus 247 GKTVgVIG~G~IGr~vA~~lr----------afGa~Viv~d~dp~~a~~A~~~G~~vv~----LeElL-----~~ADIVv 307 (464)
T 3n58_A 247 GKVAVVCGYGDVGKGSAQSLA----------GAGARVKVTEVDPICALQAAMDGFEVVT----LDDAA-----STADIVV 307 (464)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEECC----HHHHG-----GGCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEEeCCcchhhHHHhcCceecc----HHHHH-----hhCCEEE
Confidence 357999999999999999998 8999999999999887666667776531 13333 4789887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~i 635 (791)
.++++ .++.-....+.+.|+..+
T Consensus 308 ~atgt--~~lI~~e~l~~MK~GAIL 330 (464)
T 3n58_A 308 TTTGN--KDVITIDHMRKMKDMCIV 330 (464)
T ss_dssp ECCSS--SSSBCHHHHHHSCTTEEE
T ss_pred ECCCC--ccccCHHHHhcCCCCeEE
Confidence 76654 233334556666665443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.016 Score=63.30 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|.|.+|+.+++.+. ..|.+|+++|.++++.+.+++ .+.. ++.|.++.+.++++ ++++|.+
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~----------~~Ga~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~-~~~~DvV 233 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIAL----------GMGAQVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKS-VQHADLL 233 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHH-HHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHH-HhCCCEE
Confidence 367999999999999999998 899999999999999887765 4544 56677777766654 4689999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
|.+++.+
T Consensus 234 i~~~g~~ 240 (369)
T 2eez_A 234 IGAVLVP 240 (369)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 8888754
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0096 Score=59.32 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-C-----CCEEEccCCCHHHHHhcCCCC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-G-----FPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~-----~~~v~GD~t~~~~L~~agi~~ 605 (791)
++.|+| .|.+|+.+++.|. +.|++|+++|.++++.+++.+. + ..+.. .+..+.+ ++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~ 64 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLA----------TLGHEIVVGSRREEKAEAKAAEYRRIAGDASITG--MKNEDAA-----EA 64 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEE--EEHHHHH-----HH
T ss_pred eEEEEcCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhccccccCCCCh--hhHHHHH-----hc
Confidence 478999 9999999999998 7899999999999988776543 2 11211 1112222 46
Q ss_pred CcEEEEEeCCHH
Q 003861 606 PKAVMIMYTDKK 617 (791)
Q Consensus 606 a~~viv~~~~d~ 617 (791)
+|.++.+++.+.
T Consensus 65 ~D~Vi~~~~~~~ 76 (212)
T 1jay_A 65 CDIAVLTIPWEH 76 (212)
T ss_dssp CSEEEECSCHHH
T ss_pred CCEEEEeCChhh
Confidence 899999988654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.12 Score=55.49 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=87.4
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChh--hHHHHHhcCCC-EEEccCCCHHHHHhcCCCC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPS--VVKESRKLGFP-ILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~--~v~~~~~~~~~-~v~GD~t~~~~L~~agi~~ 605 (791)
.++.|+| .|.+|..++..|. ..| .+++++|.|++ .+.++.+...+ -+.+ .++.+.++++ +++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~----------~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~-~~~t~d~~~a-l~g 76 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMK----------MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRG-FLGQQQLEAA-LTG 76 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHH----------HCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEE-EESHHHHHHH-HTT
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEeCCCcHhHHHHhhcccccceEEE-EeCCCCHHHH-cCC
Confidence 3699999 7999999999997 566 78999998887 22334443332 2333 1122223322 468
Q ss_pred CcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH------HHHHH---CCCCeEEcCcH
Q 003861 606 PKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL------LDLKK---AGATDAILENA 661 (791)
Q Consensus 606 a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~------~~L~~---~Gad~Vi~p~~ 661 (791)
+|.|+.+.+. | ..|.. ++..+++.+|+..++. ..|+-+. +.+++ ...++|+--..
T Consensus 77 aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv-~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~ 155 (326)
T 1smk_A 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNL-ISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM 155 (326)
T ss_dssp CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEE-CCSSHHHHHHHHHHHHHHHTCCCTTSEEECCH
T ss_pred CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCchHHHHHHHHHHHHHccCCCcccEEEEee
Confidence 9999888742 1 23433 4556677788866665 5677666 23344 33467877765
Q ss_pred HHHHHHHHHHHhhcCCChHHHH
Q 003861 662 ETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~~~~~ 683 (791)
+-..++-..+-+.+|+++..++
T Consensus 156 Ld~~r~~~~la~~l~v~~~~v~ 177 (326)
T 1smk_A 156 LDVVRANTFVAEVLGLDPRDVD 177 (326)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCB
T ss_pred hHHHHHHHHHHHHhCcChhheE
Confidence 5466666677777788775543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.076 Score=60.06 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=61.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CC----CEEEccCCCH-HHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF----PILYGDASRP-AVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~----~~v~GD~t~~-~~L~~agi~~a 606 (791)
++.|+|.|.+|..++..|. +.|++|.+.|.++++++.+.+. |. .-+.. .++. +..+ +++++
T Consensus 3 kIgVIG~G~mG~~lA~~La----------~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~-~~~~~e~v~--~l~~a 69 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIA----------EKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAA--SLKKP 69 (478)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHH--HBCSS
T ss_pred EEEEEChHHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE-ECCHHHHHh--cccCC
Confidence 5889999999999999998 7899999999999999888764 41 10121 2333 3333 23579
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 638 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiar 638 (791)
|.|+++++++...-.++..++. +.|+ .+++-
T Consensus 70 DvVilaVp~~~~v~~vl~~l~~~l~~g-~iIId 101 (478)
T 1pgj_A 70 RKALILVQAGAATDSTIEQLKKVFEKG-DILVD 101 (478)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHHCCTT-CEEEE
T ss_pred CEEEEecCChHHHHHHHHHHHhhCCCC-CEEEE
Confidence 9999999885332333333333 4455 34443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.067 Score=54.73 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--------------HHHHHhc-CCCEEEccCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--------------VKESRKL-GFPILYGDASR 594 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--------------v~~~~~~-~~~~v~GD~t~ 594 (791)
...++.|+|.|.+|..+++.|. +.|++|++.|.++++ .+++.+. +... .. +.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~ 84 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALA----------DLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH-LA--AF 84 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE-EE--EH
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee-cc--CH
Confidence 3567999999999999999998 789999999999997 4554432 2221 11 22
Q ss_pred HHHHHhcCCCCCcEEEEEeCCHH
Q 003861 595 PAVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 595 ~~~L~~agi~~a~~viv~~~~d~ 617 (791)
.+.+ +++|.|+++++++.
T Consensus 85 ~e~~-----~~aDvVilavp~~~ 102 (245)
T 3dtt_A 85 ADVA-----AGAELVVNATEGAS 102 (245)
T ss_dssp HHHH-----HHCSEEEECSCGGG
T ss_pred HHHH-----hcCCEEEEccCcHH
Confidence 3333 46899999998764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.072 Score=56.51 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=82.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHH-HHh--cCC-----CEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE-SRK--LGF-----PILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~-~~~--~~~-----~~v~GD~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++..|. ..|+ +++++|.|+++.+. ..+ ... .-+.. ++. ..
T Consensus 2 kI~VIGaG~vG~~la~~la----------~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-----~a 64 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALV----------LRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-----SE 64 (304)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-----GG
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-----HH
Confidence 5889999999999999998 6777 99999999987653 222 111 11222 222 23
Q ss_pred CCCCcEEEEEeCCHH-----------HHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHCCCCeEEcC-cHHH
Q 003861 603 ITSPKAVMIMYTDKK-----------RTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGATDAILE-NAET 663 (791)
Q Consensus 603 i~~a~~viv~~~~d~-----------~n~~~----~~~ar~l~p~~~iiara~~~~~~~--~L-~~~Gad~Vi~p-~~~~ 663 (791)
+++||.||++.+... .|+.+ +..+++..|+..++. +.|+.+.. .+ +....++|+-- ..+-
T Consensus 65 ~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~-~tNP~~~~~~~~~~~~~~~rviG~gt~Ld 143 (304)
T 2v6b_A 65 LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV-TSNPVDLLTDLATQLAPGQPVIGSGTVLD 143 (304)
T ss_dssp GTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEE-CSSSHHHHHHHHHHHSCSSCEEECTTHHH
T ss_pred hCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEE-ecCchHHHHHHHHHhCChhcEEeCCcCch
Confidence 689999999885432 45443 455566678766555 66666542 23 33466677754 4444
Q ss_pred HHHHHHHHHhhcCCChHHH
Q 003861 664 SLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 664 ~~~la~~~l~~l~~~~~~~ 682 (791)
..++...+-+.+|+++..+
T Consensus 144 ~~r~~~~la~~l~v~~~~v 162 (304)
T 2v6b_A 144 SARFRHLMAQHAGVDGTHA 162 (304)
T ss_dssp HHHHHHHHHHHHTSCGGGE
T ss_pred HHHHHHHHHHHhCcCHHHc
Confidence 4566666666677776443
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.019 Score=59.72 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=58.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.+++|.|.|.+|+.+++.|. +.|++|++++.+++.. ..+..++.+|.+|++.++++--+++|+||-
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLT----------AQGHEVTGLRRSAQPM----PAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECTTSCC----CTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCcccc----ccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 47999999999999999998 7899999999988763 367899999999999888764345998887
Q ss_pred EeC
Q 003861 612 MYT 614 (791)
Q Consensus 612 ~~~ 614 (791)
+..
T Consensus 70 ~a~ 72 (286)
T 3gpi_A 70 CVA 72 (286)
T ss_dssp CHH
T ss_pred eCC
Confidence 653
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.05 Score=56.97 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCC-EEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFP-ILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~-~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++.|+|+|.+|..+++.|. +. +.+|++.|.++++.+.+.+.|.. ....|.. +. ++++|.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~----------~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~--~~-----~~~aDv 69 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIK----------RDHPHYKIVGYNRSDRSRDIALERGIVDEATADFK--VF-----AALADV 69 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTT--TT-----GGGCSE
T ss_pred ceEEEEeeCHHHHHHHHHHH----------hCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHH--Hh-----hcCCCE
Confidence 46999999999999999997 44 68999999999999888776653 2222221 12 357899
Q ss_pred EEEEeCCHHHHHHHHHHHHH--hCCCCcEEEEe
Q 003861 609 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARA 639 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~--l~p~~~iiara 639 (791)
|+++++.+.. ..+...++. +.++ .+++-.
T Consensus 70 Vilavp~~~~-~~v~~~l~~~~l~~~-~ivi~~ 100 (290)
T 3b1f_A 70 IILAVPIKKT-IDFIKILADLDLKED-VIITDA 100 (290)
T ss_dssp EEECSCHHHH-HHHHHHHHTSCCCTT-CEEECC
T ss_pred EEEcCCHHHH-HHHHHHHHhcCCCCC-CEEEEC
Confidence 9999987543 333334443 3344 355543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.084 Score=59.62 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC--CCEEEccCCCH-HHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRP-AVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~--~~~v~GD~t~~-~~L~~agi~~a~~ 608 (791)
.++.|+|+|.+|+.+++.|. +.|++|.+.|.++++++.+.+.. ..+ .. .++. +..+ +.+++|.
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~----------~~G~~V~v~dr~~~~~~~l~~~~~~~gi-~~-~~s~~e~v~--~l~~aDv 71 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVE----------SRGYTVAIYNRTTSKTEEVFKEHQDKNL-VF-TKTLEEFVG--SLEKPRR 71 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSCE-EE-CSSHHHHHH--TBCSSCE
T ss_pred CcEEEEeeHHHHHHHHHHHH----------hCCCEEEEEcCCHHHHHHHHHhCcCCCe-EE-eCCHHHHHh--hccCCCE
Confidence 47999999999999999998 78999999999999998887641 012 11 2333 3333 3457999
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEec
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQ 640 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~ 640 (791)
|+++++++...-.+...+.. +.|+ .+++-..
T Consensus 72 Vilavp~~~~v~~vl~~l~~~l~~g-~iiId~s 103 (474)
T 2iz1_A 72 IMLMVQAGAATDATIKSLLPLLDIG-DILIDGG 103 (474)
T ss_dssp EEECCCTTHHHHHHHHHHGGGCCTT-CEEEECS
T ss_pred EEEEccCchHHHHHHHHHHhhCCCC-CEEEECC
Confidence 99999885433333333333 3344 3444333
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.055 Score=54.68 Aligned_cols=73 Identities=18% Similarity=0.094 Sum_probs=59.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
++++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .+.+++.+|.+|++.++++ ...+.
T Consensus 8 ~~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALH----------ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 46788877 899999999998 789999999999988776654 3677889999999988765 44568
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.+|-..+
T Consensus 78 d~vi~~Ag 85 (244)
T 1cyd_A 78 DLLVNNAA 85 (244)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88877654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.046 Score=58.15 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=52.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC--hhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN--PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d--~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++.|+|+|.+|..+++.|. +.|+ +|++.|.+ ++..+.+.+.|.... .+..+.+ +++|.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~----------~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~---~~~~e~~-----~~aDv 86 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLR----------QAGAIDMAAYDAASAESWRPRAEELGVSCK---ASVAEVA-----GECDV 86 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHSCCEEEEECSSCHHHHHHHHHHTTCEEC---SCHHHHH-----HHCSE
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCCeEEEEcCCCCHHHHHHHHHCCCEEe---CCHHHHH-----hcCCE
Confidence 47999999999999999998 7899 99999997 588888887775431 1223334 35788
Q ss_pred EEEEeCCHH
Q 003861 609 VMIMYTDKK 617 (791)
Q Consensus 609 viv~~~~d~ 617 (791)
|+++++++.
T Consensus 87 Vi~~vp~~~ 95 (312)
T 3qsg_A 87 IFSLVTAQA 95 (312)
T ss_dssp EEECSCTTT
T ss_pred EEEecCchh
Confidence 888888764
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.2 Score=44.70 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEE
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~ii 636 (791)
..+.+++++|.|+...+.+ ++.|+.+... .+-.+.++.+.-.+.|.+++-..- +......+..+|+.+|+++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA-ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe-CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4567899999998865443 4567776653 344567777777789988777653 345577888899999998977
Q ss_pred EEecChh--hHHHHHHCCCCeEEcCc
Q 003861 637 ARAQDMM--HLLDLKKAGATDAILEN 660 (791)
Q Consensus 637 ara~~~~--~~~~L~~~Gad~Vi~p~ 660 (791)
+-..+.+ ......+.|++.++.-.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP 109 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKP 109 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESC
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCC
Confidence 7665443 44667889999876544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.045 Score=61.18 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=51.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-------------c---cCCCHH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-------------G---DASRPA 596 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-------------G---D~t~~~ 596 (791)
++.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+.+.+... | ..+|.+
T Consensus 2 kI~VIG~G~vG~~~A~~la----------~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~ 71 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLS----------ARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFK 71 (436)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHH
Confidence 4789999999999999998 7899999999999999988764433210 0 012222
Q ss_pred HHHhcCCCCCcEEEEEeCCH
Q 003861 597 VLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 597 ~L~~agi~~a~~viv~~~~d 616 (791)
- -++++|.++++++.+
T Consensus 72 ~----~~~~aDvviiaVptp 87 (436)
T 1mv8_A 72 K----AVLDSDVSFICVGTP 87 (436)
T ss_dssp H----HHHTCSEEEECCCCC
T ss_pred H----HhccCCEEEEEcCCC
Confidence 1 134789999998764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0098 Score=60.17 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=59.7
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
++++|.| .|.+|+.+++.|. +.|+ +|++++.+++..+.....+..++.+|.+|++.++++ ++++|+
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~----------~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~ 87 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEIL----------EQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASA-FQGHDV 87 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHH----------HHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGG-GSSCSE
T ss_pred CeEEEECCCcHHHHHHHHHHH----------cCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHH-hcCCCE
Confidence 4688888 5999999999998 7899 999999988765444445688899999999988765 457898
Q ss_pred EEEEeCC
Q 003861 609 VMIMYTD 615 (791)
Q Consensus 609 viv~~~~ 615 (791)
+|-+.+.
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 8887764
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.029 Score=62.23 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=49.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|+|++|+.+++.|+ ..|.+|++.|.|+.+...+...|+.+. +-++. ++++|.++
T Consensus 211 GktVgIiG~G~IG~~vA~~Lk----------a~Ga~Viv~D~~p~~a~~A~~~G~~~~----sL~ea-----l~~ADVVi 271 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALR----------GFGARVVVTEVDPINALQAAMEGYQVL----LVEDV-----VEEAHIFV 271 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CHHHH-----TTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCChhhhHHHHHhCCeec----CHHHH-----HhhCCEEE
Confidence 357999999999999999998 889999999999988777777776542 11222 34688776
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
.+++
T Consensus 272 lt~g 275 (436)
T 3h9u_A 272 TTTG 275 (436)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 5544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.083 Score=56.41 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=59.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChh--hHHHHHhcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~--~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
++.|+|.|.+|..++..|. +.| ++|++.|.+++ +.+.+++.|..+. . +..+.. +++
T Consensus 24 kI~iIG~G~mG~ala~~L~----------~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~-~--~~~e~~-----~~a 85 (322)
T 2izz_A 24 SVGFIGAGQLAFALAKGFT----------AAGVLAAHKIMASSPDMDLATVSALRKMGVKLT-P--HNKETV-----QHS 85 (322)
T ss_dssp CEEEESCSHHHHHHHHHHH----------HTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEE-S--CHHHHH-----HHC
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCCcceEEEECCCccHHHHHHHHHcCCEEe-C--ChHHHh-----ccC
Confidence 6999999999999999998 677 89999999986 7888877776532 2 223333 368
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 639 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara 639 (791)
|.|++++..+ .-..+...++. +.|+ .+++..
T Consensus 86 DvVilav~~~-~~~~vl~~l~~~l~~~-~ivvs~ 117 (322)
T 2izz_A 86 DVLFLAVKPH-IIPFILDEIGADIEDR-HIVVSC 117 (322)
T ss_dssp SEEEECSCGG-GHHHHHHHHGGGCCTT-CEEEEC
T ss_pred CEEEEEeCHH-HHHHHHHHHHhhcCCC-CEEEEe
Confidence 9999998853 33333333433 2344 455544
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.077 Score=58.61 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=67.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEc--------------cCCCH-HH
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG--------------DASRP-AV 597 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~G--------------D~t~~-~~ 597 (791)
++.|+|.|.+|..++..|. + |++|+++|.|+++++.+.+.+.++..- -.+++ +.
T Consensus 2 kI~VIG~G~vG~~~A~~La----------~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~ 70 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLS----------L-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAA 70 (402)
T ss_dssp EEEEECCSHHHHHHHHHHT----------T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred EEEEECCCHHHHHHHHHHh----------C-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence 4789999999999999997 7 999999999999999988766532110 01222 22
Q ss_pred HHhcCCCCCcEEEEEeCCHH----------HHHHHHHHHHHhCCCCcEEE-EecChhhHHHH-HHCCCC
Q 003861 598 LLSAGITSPKAVMIMYTDKK----------RTIEAVQRLRLAFPAIPIYA-RAQDMMHLLDL-KKAGAT 654 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d~----------~n~~~~~~ar~l~p~~~iia-ra~~~~~~~~L-~~~Gad 654 (791)
+ +++|.++++++.+. ....++..+.++.|+.-|+- ..+.....+.+ +..+.+
T Consensus 71 ~-----~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~ 134 (402)
T 1dlj_A 71 Y-----KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTD 134 (402)
T ss_dssp H-----HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred h-----cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence 3 36899999988752 12333333333666643443 34444444444 344443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.06 Score=57.05 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEE-EccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPIL-YGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v-~GD~t~~~~L~~a 601 (791)
.++++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+.+ .+..++ .+|.+|++.++++
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 80 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLL----------EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred CCEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHH
Confidence 346899988 999999999998 789999999999887654432 345667 7999999988765
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
++++|+||-+..
T Consensus 81 -~~~~d~vih~A~ 92 (342)
T 1y1p_A 81 -IKGAAGVAHIAS 92 (342)
T ss_dssp -TTTCSEEEECCC
T ss_pred -HcCCCEEEEeCC
Confidence 457898876653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.029 Score=63.01 Aligned_cols=72 Identities=15% Similarity=0.316 Sum_probs=51.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH-------------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------- 599 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~------------- 599 (791)
++.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+ +...++ ++.-++.++
T Consensus 4 kI~VIG~G~vG~~lA~~La----------~~G~~V~~~D~~~~~v~~l~~-g~~~i~-e~gl~~~l~~~~~~~~l~~t~d 71 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFA----------ELGANVRCIDTDRNKIEQLNS-GTIPIY-EPGLEKMIARNVKAGRLRFGTE 71 (450)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHH-TCSCCC-STTHHHHHHHHHHTTSEEEESC
T ss_pred EEEEECcCHHHHHHHHHHH----------hcCCEEEEEECCHHHHHHHHc-CCCccc-CCCHHHHHHhhcccCcEEEECC
Confidence 6899999999999999998 789999999999999998876 322221 111111110
Q ss_pred -hcCCCCCcEEEEEeCCH
Q 003861 600 -SAGITSPKAVMIMYTDK 616 (791)
Q Consensus 600 -~agi~~a~~viv~~~~d 616 (791)
+.-+++||.++++++.+
T Consensus 72 ~~ea~~~aDvViiaVptp 89 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTP 89 (450)
T ss_dssp HHHHGGGCSEEEECCCCC
T ss_pred HHHHHhcCCEEEEEcCCC
Confidence 00146789999998765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.011 Score=64.45 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc--------CC---------
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD--------AS--------- 593 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD--------~t--------- 593 (791)
..+++|+|.|++|..+++.+. ..|.+|+++|.++++.+.+++.|..++.-| ..
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~----------~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAK----------RLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHH----------HHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence 468999999999999999998 889999999999999999988776654321 11
Q ss_pred -CHHHHHhcCCCCCcEEEEEe--CCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 003861 594 -RPAVLLSAGITSPKAVMIMY--TDK-KRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 594 -~~~~L~~agi~~a~~viv~~--~~d-~~n~~~~~~ar~l~p~~~iiara 639 (791)
+.+.+++ -+.++|.+|.+. +.+ ...+..-..++.+.|+.-|+-.+
T Consensus 254 ~~~~~l~e-~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 254 QQQQALED-AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHH-HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhHHHHHH-HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 1233433 368999887664 221 22233345667777764454443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=64.61 Aligned_cols=84 Identities=12% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|.+++...++...|+.+. + ++++ ++++|.|+
T Consensus 277 GktVgIIG~G~IG~~vA~~l~----------~~G~~V~v~d~~~~~~~~a~~~G~~~~-----~---l~el-l~~aDiVi 337 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLR----------GLGATVWVTEIDPICALQAAMEGYRVV-----T---MEYA-ADKADIFV 337 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSCHHHHHHHHTTTCEEC-----C---HHHH-TTTCSEEE
T ss_pred CCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCChHhHHHHHHcCCEeC-----C---HHHH-HhcCCEEE
Confidence 457999999999999999998 889999999999987655555565431 2 3332 57899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~i 635 (791)
.+++. .++.-....+.+.|+..+
T Consensus 338 ~~~~t--~~lI~~~~l~~MK~gAil 360 (494)
T 3d64_A 338 TATGN--YHVINHDHMKAMRHNAIV 360 (494)
T ss_dssp ECSSS--SCSBCHHHHHHCCTTEEE
T ss_pred ECCCc--ccccCHHHHhhCCCCcEE
Confidence 88743 222223455666665433
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.02 Score=63.27 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|++|+.+++.|+ ..|.+|++.|.||.+...+...|+.+. +-++. ++++|.++
T Consensus 220 GktV~ViG~G~IGk~vA~~Lr----------a~Ga~Viv~D~dp~ra~~A~~~G~~v~----~Leea-----l~~ADIVi 280 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALK----------AMGSIVYVTEIDPICALQACMDGFRLV----KLNEV-----IRQVDIVI 280 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CHHHH-----TTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEeCChhhhHHHHHcCCEec----cHHHH-----HhcCCEEE
Confidence 457999999999999999998 889999999999987776766675432 11222 35789887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
.++++ .++.-....+.+.|+..++
T Consensus 281 ~atgt--~~lI~~e~l~~MK~gailI 304 (435)
T 3gvp_A 281 TCTGN--KNVVTREHLDRMKNSCIVC 304 (435)
T ss_dssp ECSSC--SCSBCHHHHHHSCTTEEEE
T ss_pred ECCCC--cccCCHHHHHhcCCCcEEE
Confidence 76543 2233334555555554333
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.11 Score=51.71 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
..++.|+|.|.+|..+++.|. +.|++|+++|.+++ .++++|.++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~----------~~g~~V~~~~~~~~--------------------------~~~~aD~vi 62 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFE----------IAGHEVTYYGSKDQ--------------------------ATTLGEIVI 62 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECTTCC--------------------------CSSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHH--------------------------HhccCCEEE
Confidence 346999999999999999998 78999999998876 457899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
+++..+ ....+...++...++ .+++...+
T Consensus 63 ~av~~~-~~~~v~~~l~~~~~~-~~vi~~~~ 91 (209)
T 2raf_A 63 MAVPYP-ALAALAKQYATQLKG-KIVVDITN 91 (209)
T ss_dssp ECSCHH-HHHHHHHHTHHHHTT-SEEEECCC
T ss_pred EcCCcH-HHHHHHHHHHHhcCC-CEEEEECC
Confidence 999843 333333333332224 45544433
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.074 Score=53.78 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=58.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CCCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi~~a 606 (791)
++++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .+..++.+|.+|++.++++ ...+.
T Consensus 8 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALH----------ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 45788887 799999999998 789999999999988776543 3677889999999988765 34567
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|.+|-..+
T Consensus 78 d~vi~~Ag 85 (244)
T 3d3w_A 78 DLLVNNAA 85 (244)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 88876653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.062 Score=56.33 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcCCCC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
++++|.| .|..|+.+++.|. +.|.+|++++.++++.+++.+ .+..++.+|.+|++.++++ +++
T Consensus 120 k~vlVtGaaGGiG~aia~~L~----------~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~ 188 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLA----------GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEA-VKG 188 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHH-TTT
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHH-HHh
Confidence 4789999 8999999999998 789999999999887665532 3567888999999887664 566
Q ss_pred CcEEEEEeC
Q 003861 606 PKAVMIMYT 614 (791)
Q Consensus 606 a~~viv~~~ 614 (791)
+|.+|-+++
T Consensus 189 ~DvlVn~ag 197 (287)
T 1lu9_A 189 AHFVFTAGA 197 (287)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 898888875
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.14 Score=54.97 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+....+.|. ++.+++ .++|+|+
T Consensus 4 rvgiIG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~--~~ll~~---~~~D~V~ 69 (344)
T 3ezy_A 4 RIGVIGLGRIGTIHAENLKM---------IDDAILYAISDVREDRLREMKEKLGVEKAYKDP--HELIED---PNVDAVL 69 (344)
T ss_dssp EEEEECCSHHHHHHHHHGGG---------STTEEEEEEECSCHHHHHHHHHHHTCSEEESSH--HHHHHC---TTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHhCCCceeCCH--HHHhcC---CCCCEEE
Confidence 68999999999999999972 3567776 67999999877654 5655455432 344442 5789999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 70 i~tp~~~-h~~~~~~al~~g--k~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~ 122 (344)
T 3ezy_A 70 VCSSTNT-HSELVIACAKAK--KHVFCEKPLSLNLADVDRMIEETKKADVILFTGF 122 (344)
T ss_dssp ECSCGGG-HHHHHHHHHHTT--CEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred EcCCCcc-hHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence 9998754 344455555554 467765 4555554444 45576555443
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.023 Score=62.13 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|.|+.|+.+++.++ +.|++++++|.+++.. ........+.+|.+|.+.+.++- +++|.+.
T Consensus 12 ~~~IlIlG~G~lg~~la~aa~----------~lG~~viv~d~~~~~p--~~~~ad~~~~~~~~d~~~l~~~~-~~~dvi~ 78 (377)
T 3orq_A 12 GATIGIIGGGQLGKMMAQSAQ----------KMGYKVVVLDPSEDCP--CRYVAHEFIQAKYDDEKALNQLG-QKCDVIT 78 (377)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCTTCT--TGGGSSEEEECCTTCHHHHHHHH-HHCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCCh--hhhhCCEEEECCCCCHHHHHHHH-HhCCcce
Confidence 457999999999999999998 8999999999987632 22233457789999999888763 5578653
Q ss_pred EEeCCHHHHHHHHHHHHH---hCCCCcEEEEecChhhHH-HHHHCCCCe
Q 003861 611 IMYTDKKRTIEAVQRLRL---AFPAIPIYARAQDMMHLL-DLKKAGATD 655 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~---l~p~~~iiara~~~~~~~-~L~~~Gad~ 655 (791)
...++ .+......+.+ ..|+...+..+.|....+ .++++|+..
T Consensus 79 ~~~E~--~~~~~l~~l~~~~~v~p~~~~~~~~~dK~~~k~~l~~~Gip~ 125 (377)
T 3orq_A 79 YEFEN--ISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKV 125 (377)
T ss_dssp ESSTT--SCHHHHHHHHHHSCCTTTTHHHHHHHSHHHHHHHHHHTTCCB
T ss_pred ecccc--cCHHHHHHHhhhcCCCCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 33322 22222222332 234445666666666555 567888653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.21 Score=53.54 Aligned_cols=133 Identities=19% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHH----HHhc------CCCEEEccCCCHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL------GFPILYGDASRPAVL 598 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~----~~~~------~~~~v~GD~t~~~~L 598 (791)
..++.|+|.|.+|..++..|. ..|. +++++|.|+++++. +.+. +..+..+| .
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~----------~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~--- 68 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALI----------NQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y--- 68 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H---
Confidence 457999999999999999997 5565 89999999987654 4331 22232222 2
Q ss_pred HhcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-CCC--CeEEc
Q 003861 599 LSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAIL 658 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~-~Ga--d~Vi~ 658 (791)
..+++||.+|++.+. | ..|.. ++..+++..|+.. +..+.||.+.- .+.+ .|. ++|+-
T Consensus 69 --~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~-vlvvtNPvd~~t~~~~k~~g~p~~rviG 145 (326)
T 3pqe_A 69 --EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI-FLVATNPVDILTYATWKFSGLPKERVIG 145 (326)
T ss_dssp --GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSE-EEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred --HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeE-EEEcCChHHHHHHHHHHhcCCCHHHEEe
Confidence 246789999888642 1 34543 4456666788765 44455655432 2333 343 45665
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
- ..+-..|+-..+-+.+|+++..+
T Consensus 146 ~gt~LD~~R~~~~la~~lgv~~~~V 170 (326)
T 3pqe_A 146 SGTTLDSARFRFMLSEYFGAAPQNV 170 (326)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGE
T ss_pred eccccHHHHHHHHHHHHhCCCHHHc
Confidence 3 33334555556666677777544
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.047 Score=58.24 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE---ccC--------CCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY---GDA--------SRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~---GD~--------t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. +.|++|++++.++. +.+++.|..+-. |+. +++ ++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~----------~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~---~~ 67 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLA----------KTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSA---AE 67 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHH----------HTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCG---GG
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCH---HH
Confidence 46899999999999999998 78999999999872 666666644332 111 122 22
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-CCCCeEE
Q 003861 601 AGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDAI 657 (791)
Q Consensus 601 agi~~a~~viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~-~Gad~Vi 657 (791)
+ .+++|.|++++.....- .+...++. +.++..|+.-.+--++.+.+++ .+.+.|+
T Consensus 68 ~-~~~~DlVilavK~~~~~-~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 68 L-ETKPDCTLLCIKVVEGA-DRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp C-SSCCSEEEECCCCCTTC-CHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEE
T ss_pred c-CCCCCEEEEecCCCChH-HHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEE
Confidence 2 24899999998874321 22333333 3445456666665555455544 4555544
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.078 Score=59.98 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=53.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh---------
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS--------- 600 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~--------- 600 (791)
.+-++.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+.+.+... +.-++.+++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la----------~~G~~V~~~d~~~~~v~~l~~~~~~i~e--~gl~~~l~~~~~~~~l~~ 74 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLA----------DIGHDVFCLDVDQAKIDILNNGGVPIHE--PGLKEVIARNRSAGRLRF 74 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSSCC--TTHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECcCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHCCCCCcCC--CCHHHHHHHhcccCCEEE
Confidence 3557999999999999999998 7899999999999999999875433221 110111110
Q ss_pred -----cCCCCCcEEEEEeCC
Q 003861 601 -----AGITSPKAVMIMYTD 615 (791)
Q Consensus 601 -----agi~~a~~viv~~~~ 615 (791)
..+++||.+++++++
T Consensus 75 ttd~~~a~~~aDvviiaVpt 94 (478)
T 2y0c_A 75 STDIEAAVAHGDVQFIAVGT 94 (478)
T ss_dssp ECCHHHHHHHCSEEEECCCC
T ss_pred ECCHHHHhhcCCEEEEEeCC
Confidence 113578999999876
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.18 Score=56.81 Aligned_cols=69 Identities=20% Similarity=0.344 Sum_probs=51.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cC---------CCEEEcc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LG---------FPILYGD 591 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~---------~~~v~GD 591 (791)
++|.|+|.|.+|..+|..|. +.|++|+++|.+++..+.+.+ .| .....
T Consensus 38 ~kV~VIGaG~MG~~iA~~la----------~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-- 105 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFA----------RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-- 105 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE--
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh--
Confidence 46999999999999999998 889999999999998776543 11 00111
Q ss_pred CCCHHHHHhcCCCCCcEEEEEeCCHH
Q 003861 592 ASRPAVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 592 ~t~~~~L~~agi~~a~~viv~~~~d~ 617 (791)
.+|.+ .+++||.||.++.++.
T Consensus 106 ~~~~~-----~~~~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 106 SSSTK-----ELSTVDLVVEAVFEDM 126 (463)
T ss_dssp ESCGG-----GGTTCSEEEECCCSCH
T ss_pred cCCHH-----HHCCCCEEEEcCCCCH
Confidence 22322 2578999999998864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.045 Score=58.50 Aligned_cols=67 Identities=30% Similarity=0.408 Sum_probs=55.4
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..++++|.|. |-+|+.+++.|. +.|++|++++.+++. .+..++.+|.+|++.++++ ++++|+
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~-~~~~d~ 80 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALR----------TQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDA-IMGVSA 80 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHH----------HTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHH-HTTCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHH----------hCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHH-HhCCCE
Confidence 3457999998 999999999998 789999999998865 5789999999999998875 347888
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
|+-+.
T Consensus 81 vih~A 85 (347)
T 4id9_A 81 VLHLG 85 (347)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87554
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.18 Score=53.79 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=87.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhh--HHHHHhcCCCE-EEcc-C-CCHHHHHhcCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGFPI-LYGD-A-SRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~--v~~~~~~~~~~-v~GD-~-t~~~~L~~agi~ 604 (791)
++.|+|. |.+|+.++..|. ..| .+++++|.|+.. +.++.+...+. +.+- + +|.+ + .++
T Consensus 2 KI~IiGa~G~VG~~la~~L~----------~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~---~-a~~ 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLK----------NSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLP---D-CLK 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHH----------TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHH---H-HHT
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHH---H-HhC
Confidence 5889998 999999999997 556 689999999822 22333322221 2221 1 2222 1 246
Q ss_pred CCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH------HHHHCC---CCeEEcCc
Q 003861 605 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL------DLKKAG---ATDAILEN 660 (791)
Q Consensus 605 ~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~------~L~~~G---ad~Vi~p~ 660 (791)
+||.|+++.+. | ..|.. ++..+++..|+..++. +.||.+.- .+++.+ .++|+--.
T Consensus 68 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t 146 (314)
T 1mld_A 68 GCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI-ISNPVNSTIPITAEVFKKHGVYNPNKIFGVT 146 (314)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE-CSSCHHHHHHHHHHHHHHTTCCCTTSEEECC
T ss_pred CCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ECCCcchhHHHHHHHHHHcCCCCcceEEEee
Confidence 88988887642 1 23444 3455667788876666 67777754 366765 77888876
Q ss_pred HHHHHHHHHHHHhhcCCChHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
.+-..++-..+-+.+|+++..++
T Consensus 147 ~Ld~~r~~~~la~~l~v~~~~v~ 169 (314)
T 1mld_A 147 TLDIVRANAFVAELKGLDPARVS 169 (314)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCB
T ss_pred cccHHHHHHHHHHHhCcChHhEE
Confidence 65466677777777888875543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.14 Score=53.96 Aligned_cols=39 Identities=26% Similarity=0.441 Sum_probs=35.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
++|.|+|.|.+|..++..|. +.|++|+++|.|+++++++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~ 54 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAA----------ATGHTVVLVDQTEDILAKS 54 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHH
Confidence 46999999999999999998 7899999999999988765
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.054 Score=58.13 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEc-------cC-CCHHHHHhc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG-------DA-SRPAVLLSA 601 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~G-------D~-t~~~~L~~a 601 (791)
+.-++.|+|.|.+|..++..|. +.|++|+++|.++++++.+++.+.+. +. .. ++ .++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~----------~~G~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~---~~~- 77 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLH----------ENGEEVILWARRKEIVDLINVSHTSP-YVEESKITVRATND---LEE- 77 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHSCBT-TBTTCCCCSEEESC---GGG-
T ss_pred cCCcEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHhCCcc-cCCCCeeeEEEeCC---HHH-
Confidence 4557999999999999999998 78999999999999999888776422 10 00 12 222
Q ss_pred CCCCCcEEEEEeCC
Q 003861 602 GITSPKAVMIMYTD 615 (791)
Q Consensus 602 gi~~a~~viv~~~~ 615 (791)
++++|.|++++.+
T Consensus 78 -~~~aDvVil~vk~ 90 (335)
T 1z82_A 78 -IKKEDILVIAIPV 90 (335)
T ss_dssp -CCTTEEEEECSCG
T ss_pred -hcCCCEEEEECCH
Confidence 6789999999885
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.19 Score=53.62 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=58.8
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHHh-------cCCCEEEccCCCHHHH
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRK-------LGFPILYGDASRPAVL 598 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~~-------~~~~~v~GD~t~~~~L 598 (791)
.++++|.|. |-+|+.+++.|. +.|++|++++.++. ..+.+.+ .++.++.||.+|++.+
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLL----------KLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 457999995 999999999998 78999999998543 3444443 5788999999999999
Q ss_pred HhcCCCCCcEEEEEeC
Q 003861 599 LSAGITSPKAVMIMYT 614 (791)
Q Consensus 599 ~~agi~~a~~viv~~~ 614 (791)
+++ ++++|+||-+..
T Consensus 95 ~~~-~~~~d~Vih~A~ 109 (351)
T 3ruf_A 95 EQV-MKGVDHVLHQAA 109 (351)
T ss_dssp HHH-TTTCSEEEECCC
T ss_pred HHH-hcCCCEEEECCc
Confidence 876 348998887764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.079 Score=55.71 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++++|.| .|.+|+.+++.|. +.|++|++++.+++..+ +. +..++.+|.+ ++.++++ ++++|+||
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~-~~~~~~~-~~~~d~Vi 67 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIK----------NDGNTPIILTRSIGNKA-IN--DYEYRVSDYT-LEDLINQ-LNDVDAVV 67 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCCC--------CCEEEECCCC-HHHHHHH-TTTCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHH----------hCCCEEEEEeCCCCccc-CC--ceEEEEcccc-HHHHHHh-hcCCCEEE
Confidence 4689998 5999999999998 78999999999865544 33 7899999999 9988876 45899888
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-+..
T Consensus 68 h~a~ 71 (311)
T 3m2p_A 68 HLAA 71 (311)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 7654
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.047 Score=60.80 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=55.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh----------cC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS----------AG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~----------ag 602 (791)
+.-|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+...+. .++.-++.+++ ..
T Consensus 13 ~~~ViGlGyvGlp~A~~La----------~~G~~V~~~D~~~~kv~~L~~g~~pi--~epgl~~ll~~~~~~g~l~~ttd 80 (431)
T 3ojo_A 13 KLTVVGLGYIGLPTSIMFA----------KHGVDVLGVDINQQTIDKLQNGQISI--EEPGLQEVYEEVLSSGKLKVSTT 80 (431)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSS--CCTTHHHHHHHHHHTTCEEEESS
T ss_pred ccEEEeeCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHCCCCCc--CCCCHHHHHHhhcccCceEEeCc
Confidence 4778999999999999998 88999999999999999998654333 23333333332 12
Q ss_pred CCCCcEEEEEeCCHH
Q 003861 603 ITSPKAVMIMYTDKK 617 (791)
Q Consensus 603 i~~a~~viv~~~~d~ 617 (791)
+++||.++++.+++.
T Consensus 81 ~~~aDvvii~VpTp~ 95 (431)
T 3ojo_A 81 PEASDVFIIAVPTPN 95 (431)
T ss_dssp CCCCSEEEECCCCCB
T ss_pred hhhCCEEEEEeCCCc
Confidence 568999999987753
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.054 Score=58.16 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=52.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc---------CCCHHHHHhcC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD---------ASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD---------~t~~~~L~~ag 602 (791)
.++.|+|.|.+|..++..|. +.|++|+++|.+ ++.+.+++.|......+ .++++ +
T Consensus 4 mkI~IiGaG~~G~~~a~~L~----------~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~-- 67 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLA----------LAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAA---A-- 67 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHH----------HTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHH---H--
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHH---H--
Confidence 37999999999999999998 789999999986 67777877776553211 12333 2
Q ss_pred CCCCcEEEEEeCCH
Q 003861 603 ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 i~~a~~viv~~~~d 616 (791)
++++|.|++++...
T Consensus 68 ~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 68 LGEQDVVIVAVKAP 81 (335)
T ss_dssp HCCCSEEEECCCHH
T ss_pred cCCCCEEEEeCCch
Confidence 36899999998874
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=64.47 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.++ ..|.+|++.|.+++...++.+.|+.+ .+ ++++ ++++|.|+
T Consensus 257 GktVgIIG~G~IG~~vA~~l~----------~~G~~Viv~d~~~~~~~~a~~~g~~~-----~~---l~el-l~~aDiVi 317 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMK----------GLGARVYITEIDPICAIQAVMEGFNV-----VT---LDEI-VDKGDFFI 317 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTTCEE-----CC---HHHH-TTTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCcCEEEEEeCChhhHHHHHHcCCEe-----cC---HHHH-HhcCCEEE
Confidence 457999999999999999998 78999999999998875666666643 12 3332 57899888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC-h-hhHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-M-MHLLDLKK 650 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~-~-~~~~~L~~ 650 (791)
.+++.. ++.-....+.+.|+..++=-.+- . -+.+.|.+
T Consensus 318 ~~~~t~--~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 318 TCTGNV--DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp ECCSSS--SSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred ECCChh--hhcCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 886432 22222344556665443322222 2 25555555
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.17 Score=54.91 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHH-HHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPA-VLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~-~L~~agi~~a~~v 609 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+++.|..+ .+|.+ .+++ .+.|+|
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~---~~~D~V 69 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASA---------ADNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLAD---EKVDAV 69 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------STTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHC---TTCCEE
T ss_pred CcEEEECcCHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcC---CCCCEE
Confidence 369999999999999999972 3477776 5599999988777677643 24444 4432 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 70 ~i~tp~~~h-~~~~~~al~aG--khVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 122 (359)
T 3e18_A 70 LIATPNDSH-KELAISALEAG--KHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVH 122 (359)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEcCCcHHH-HHHHHHHHHCC--CCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 999987543 44445555544 467774 4565555554 5557665443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.07 Score=59.74 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC---cEEEEcCChhhHHHHHhcCCCEEEccCCCH---HHHHhcC
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKLGFPILYGDASRP---AVLLSAG 602 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~---~vvvID~d~~~v~~~~~~~~~~v~GD~t~~---~~L~~ag 602 (791)
..+++++|+|+|.+|+.+++.|.+ ..+. +++++|.+.+..+.....|......+.++. +++.++
T Consensus 11 ~~~~rVlIIGaGgVG~~va~lla~---------~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aL- 80 (480)
T 2ph5_A 11 LFKNRFVILGFGCVGQALMPLIFE---------KFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST- 80 (480)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHH---------HBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGG-
T ss_pred cCCCCEEEECcCHHHHHHHHHHHh---------CCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHH-
Confidence 457789999999999999999973 4455 799999887754334445666666665555 445544
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
+++.|.|| ....+..|+.+...+.+.+ +..+-.++
T Consensus 81 l~~~DvVI-N~s~~~~~l~Im~acleaG--v~YlDTa~ 115 (480)
T 2ph5_A 81 LEENDFLI-DVSIGISSLALIILCNQKG--ALYINAAT 115 (480)
T ss_dssp CCTTCEEE-ECCSSSCHHHHHHHHHHHT--CEEEESSC
T ss_pred hcCCCEEE-ECCccccCHHHHHHHHHcC--CCEEECCC
Confidence 45567665 4555678888999999986 45555554
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.03 Score=61.00 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=58.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.+++........+..++.+|.+|++.++++ ++++|+||
T Consensus 30 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~d~Vi 98 (379)
T 2c5a_A 30 LKISITGAGGFIASHIARRLK----------HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHVF 98 (379)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEEE
T ss_pred CeEEEECCccHHHHHHHHHHH----------HCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHH-hCCCCEEE
Confidence 46899988 999999999998 7899999999987654433445788999999999988875 35789887
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-+..
T Consensus 99 h~A~ 102 (379)
T 2c5a_A 99 NLAA 102 (379)
T ss_dssp ECCC
T ss_pred ECce
Confidence 7653
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.073 Score=57.26 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CC-cEEEEcCChhhHHHHHh----cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~-~vvvID~d~~~v~~~~~----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
+.++|.|. |.+|+.+++.|. +. |+ +|++++.+++..+.+.+ .+..++.||.+|++.++++ ++
T Consensus 22 k~vlVTGatG~iG~~l~~~L~----------~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~ 90 (344)
T 2gn4_A 22 QTILITGGTGSFGKCFVRKVL----------DTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYA-LE 90 (344)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHH-TT
T ss_pred CEEEEECCCcHHHHHHHHHHH----------hhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHH-Hh
Confidence 46888885 999999999998 67 87 99999999987665543 4678899999999998876 35
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
++|+||-+..
T Consensus 91 ~~D~Vih~Aa 100 (344)
T 2gn4_A 91 GVDICIHAAA 100 (344)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEECCC
Confidence 7898887764
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.078 Score=56.78 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=65.6
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.+++.++|.|..|.. +|+.|. ++|++|.+.|.++ +..+++++.|.++..|. +++.+.+ .++|
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~----------~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~--~~~~l~~---~~~d 68 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAK----------EAGFEVSGCDAKMYPPMSTQLEALGIDVYEGF--DAAQLDE---FKAD 68 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHH----------HTTCEEEEEESSCCTTHHHHHHHTTCEEEESC--CGGGGGS---CCCS
T ss_pred CcEEEEEEECHHHHHHHHHHHH----------hCCCEEEEEcCCCCcHHHHHHHhCCCEEECCC--CHHHcCC---CCCC
Confidence 357999999999996 999998 8999999999875 35677888899998873 4443321 3688
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.||+..+=+.+|-. ...+|+.+ ++|+-+.
T Consensus 69 ~vV~Spgi~~~~p~-~~~a~~~g--i~v~~~~ 97 (326)
T 3eag_A 69 VYVIGNVAKRGMDV-VEAILNLG--LPYISGP 97 (326)
T ss_dssp EEEECTTCCTTCHH-HHHHHHTT--CCEEEHH
T ss_pred EEEECCCcCCCCHH-HHHHHHcC--CcEEeHH
Confidence 88776544444444 45677765 6777653
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.069 Score=58.50 Aligned_cols=110 Identities=14% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|.|+.|+.+++.++ +.|++|+++|.+++.. ........+.+|..|.+.+.+.. +++|++.
T Consensus 14 ~k~IlIlG~G~~g~~la~aa~----------~~G~~vi~~d~~~~~~--~~~~ad~~~~~~~~d~~~l~~~~-~~~dvI~ 80 (389)
T 3q2o_A 14 GKTIGIIGGGQLGRMMALAAK----------EMGYKIAVLDPTKNSP--CAQVADIEIVASYDDLKAIQHLA-EISDVVT 80 (389)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSTTCT--TTTTCSEEEECCTTCHHHHHHHH-HTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCc--hHHhCCceEecCcCCHHHHHHHH-HhCCEee
Confidence 357999999999999999998 8999999999887532 11222346678999988877654 4578663
Q ss_pred EEeCCHHHHHHHHHHHHHh---CCCCcEEEEecChhhHH-HHHHCCCCe
Q 003861 611 IMYTDKKRTIEAVQRLRLA---FPAIPIYARAQDMMHLL-DLKKAGATD 655 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l---~p~~~iiara~~~~~~~-~L~~~Gad~ 655 (791)
...+ ..+...+..+.+. .|+...+..+.|....+ .++++|+..
T Consensus 81 ~~~e--~~~~~~~~~l~~~g~~~~~~~~~~~~~dK~~~k~~l~~~Gip~ 127 (389)
T 3q2o_A 81 YEFE--NIDYRCLQWLEKHAYLPQGSQLLSKTQNRFTEKNAIEKAGLPV 127 (389)
T ss_dssp ESCC--CCCHHHHHHHHHHSCCTTCSHHHHHTTSHHHHHHHHHHTTCCC
T ss_pred eccc--cccHHHHHHHHhhCccCCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 3333 2333344444443 45555666677766655 578888653
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.18 Score=53.13 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+. .++.|.+ ..+.+++ +.|.|+++.+.+.+ .|... .+|.+-+-+ ++|+
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~----~~D~ 69 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTK---------SERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAK----KCDC 69 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTS---------CSSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHT----TCSE
T ss_pred CcEEEEecCHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHh----cCCE
Confidence 47999999999996 8888861 3577877 78999999887754 56654 345554443 8999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+
T Consensus 70 V~i~tp~~~h-~~~~~~al~~g--k~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v 122 (308)
T 3uuw_A 70 IFLHSSTETH-YEIIKILLNLG--VHVYVDKPLASTVSQGEELIELSTKKNLNLMV 122 (308)
T ss_dssp EEECCCGGGH-HHHHHHHHHTT--CEEEECSSSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEeCCcHhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999987643 34444444443 456663 3344443333 444655444
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.078 Score=56.39 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=81.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cC-----CC-EEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LG-----FP-ILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~-----~~-~v~GD~t~~~~L~~agi 603 (791)
++.|+|.|.+|..++..|.+ ...|++|+++|.|+++++.... .. .. -+.. .+|. + . +
T Consensus 2 kI~VIGaG~vG~~la~~la~--------~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~---~-~-l 67 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAE--------KQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG-SNDY---A-D-T 67 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE-ESCG---G-G-G
T ss_pred EEEEECCCHHHHHHHHHHHh--------CCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE-CCCH---H-H-H
Confidence 57899999999999999972 0148999999999988765421 11 11 1221 1232 2 2 6
Q ss_pred CCCcEEEEEeCCH----H-------HHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH---CCCCeEEcC-cHH
Q 003861 604 TSPKAVMIMYTDK----K-------RTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK---AGATDAILE-NAE 662 (791)
Q Consensus 604 ~~a~~viv~~~~d----~-------~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~---~Gad~Vi~p-~~~ 662 (791)
++||.+|++.+.. . .|.. ++..+++..|+..++.. .|+-+. ..+++ ...++|+-- ...
T Consensus 68 ~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~-tNP~~~~~~~~~~~~~~~~~rviG~gt~l 146 (310)
T 1guz_A 68 ANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV-SNPLDIMTHVAWVRSGLPKERVIGMAGVL 146 (310)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC-CSSHHHHHHHHHHHHCSCGGGEEEECHHH
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCchHHHHHHHHHhcCCChHHEEECCCch
Confidence 8999999998531 1 4443 34455556787665554 555543 23444 333467655 333
Q ss_pred HHHHHHHHHHhhcCCChHHH
Q 003861 663 TSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 663 ~~~~la~~~l~~l~~~~~~~ 682 (791)
-..++...+-+.+|+++..+
T Consensus 147 d~~r~~~~la~~l~v~~~~v 166 (310)
T 1guz_A 147 DAARFRSFIAMELGVSMQDI 166 (310)
T ss_dssp HHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHHHhCCCHHHe
Confidence 34566666666677776444
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.08 Score=53.20 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcC-----
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~ag----- 602 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+. ....+.+|.+|++.++++=
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLH----------AKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEE 74 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHH
Confidence 446788875 789999999998 8899999999999887766543 5788999999998776531
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 75 ~~~~id~li~~Ag 87 (234)
T 2ehd_A 75 AFGELSALVNNAG 87 (234)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136787776643
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.19 Score=53.28 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+. .++.|.+ ..+.+++ +.|.|+++.+.+.+ .|.+ -.++.+.| ..++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~~~~~g~~----~~~~~~~l----~~~~D~ 68 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAA---------ASDWTLQGAWSPTRAKALPICESWRIP----YADSLSSL----AASCDA 68 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHS---------CSSEEEEEEECSSCTTHHHHHHHHTCC----BCSSHHHH----HTTCSE
T ss_pred ceEEEECCCHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCC----ccCcHHHh----hcCCCE
Confidence 36999999999996 8888861 3567776 88999998877654 4655 23455555 257999
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+
T Consensus 69 V~i~tp~~~h-~~~~~~al~~G--~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~ 121 (319)
T 1tlt_A 69 VFVHSSTASH-FDVVSTLLNAG--VHVCVDKPLAENLRDAERLVELAARKKLTLMV 121 (319)
T ss_dssp EEECSCTTHH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCchhH-HHHHHHHHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 9999987543 34444444443 466664 2344443333 556776554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.27 Score=52.30 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHH----hc------CCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR----KL------GFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~----~~------~~~~v~GD~t~~~~L~ 599 (791)
+.++.|+|.|.+|..++..|. ..|+ +|+++|.|+++.+... +. ...+... +|.+
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la----------~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~~--- 68 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVG----------KDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT--DDYA--- 68 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC--CCHH---
Confidence 347999999999999999998 6787 9999999998766531 11 1222211 2222
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHHC-C--CCeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKKA-G--ATDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~~--~~L~~~-G--ad~Vi~p 659 (791)
.+++||.||.+.+- | .+|. .++..+++..|+..++ .+.|+.+. ..+.+. | .++|+-.
T Consensus 69 --a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii-~~sNp~~~~~~~~~~~~~~~~~rviG~ 145 (317)
T 2ewd_A 69 --DISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI-CITNPLDVMVSHFQKVSGLPHNKVCGM 145 (317)
T ss_dssp --GGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE-ECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred --HhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHHHhhCCCHHHEEec
Confidence 35789999998821 0 2333 3455666667765444 44455443 234333 3 3567765
Q ss_pred c-HHHHHHHHHHHHhhcCCCh
Q 003861 660 N-AETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 660 ~-~~~~~~la~~~l~~l~~~~ 679 (791)
. .+-..+....+.+.+|.++
T Consensus 146 ~t~ld~~r~~~~la~~lg~~~ 166 (317)
T 2ewd_A 146 AGVLDSSRFRTFIAQHFGVNA 166 (317)
T ss_dssp CHHHHHHHHHHHHHHHHTSCG
T ss_pred cCcHHHHHHHHHHHHHhCcCh
Confidence 2 3333455555656666654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.063 Score=55.26 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=56.1
Q ss_pred CCEEEeCC-Ch-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |+ +|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++.++++
T Consensus 23 k~vlITGasg~GIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRAL----------LEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHH
Confidence 46888998 75 9999999998 889999999999987655432 2467889999999877653
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 93 ~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCcEEEECCC
Confidence 1135677776654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.12 Score=52.55 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc--CC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--GI 603 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a--gi 603 (791)
..++++|.|. |-+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++ ..
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLH----------KLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc
Confidence 3456788876 678999999998 889999999999998777653 3567888999999887754 34
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-..+
T Consensus 83 ~~id~li~~Ag 93 (249)
T 3f9i_A 83 SNLDILVCNAG 93 (249)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 57787776543
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.033 Score=59.24 Aligned_cols=66 Identities=18% Similarity=0.385 Sum_probs=50.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+++.|+ ..|.+|++.|.+++. +.+.+.|.... +-++.+ +++|.|++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~~----~l~ell-----~~aDvV~l 202 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIAN----------ALGMNILLYDPYPNE-ERAKEVNGKFV----DLETLL-----KESDVVTI 202 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCH-HHHHHTTCEEC----CHHHHH-----HHCSEEEE
T ss_pred ceEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCCh-hhHhhcCcccc----CHHHHH-----hhCCEEEE
Confidence 46999999999999999998 889999999999877 45556665321 223344 36898988
Q ss_pred EeCCHH
Q 003861 612 MYTDKK 617 (791)
Q Consensus 612 ~~~~d~ 617 (791)
+.+..+
T Consensus 203 ~~p~~~ 208 (307)
T 1wwk_A 203 HVPLVE 208 (307)
T ss_dssp CCCCST
T ss_pred ecCCCh
Confidence 887643
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.1 Score=55.34 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++.|+|+|++|+..++.|.+ ..+.+++ ++|.|+++.+. .|.. + ++.+-+.+. +++|+|+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~---------~~~~elvav~d~~~~~~~~---~g~~--~---~~~~~l~~~--~~~DvVi 70 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALRE---------APDFEIAGIVRRNPAEVPF---ELQP--F---RVVSDIEQL--ESVDVAL 70 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECC----------CCTT--S---CEESSGGGS--SSCCEEE
T ss_pred CEEEEECChHHHHHHHHHHhc---------CCCCEEEEEEcCCHHHHHH---cCCC--c---CCHHHHHhC--CCCCEEE
Confidence 479999999999999999972 4577877 68999987654 4443 1 122223333 7899999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
++++++. ....+..+.+.+ .+++..
T Consensus 71 iatp~~~-h~~~~~~al~aG--~~Vi~e 95 (304)
T 3bio_A 71 VCSPSRE-VERTALEILKKG--ICTADS 95 (304)
T ss_dssp ECSCHHH-HHHHHHHHHTTT--CEEEEC
T ss_pred ECCCchh-hHHHHHHHHHcC--CeEEEC
Confidence 9998653 344455555543 467754
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.071 Score=55.92 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=55.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |-+|+.+++.|. +.|++|+++|.+++........+..++.+|.+|++ ++++ ++. |+||-
T Consensus 2 ~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~-~~~-d~vih 68 (312)
T 3ko8_A 2 RIVVTGGAGFIGSHLVDKLV----------ELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYS-WGAG-IKG-DVVFH 68 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTT-TTTT-CCC-SEEEE
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCEEEEEeCCCCCchhhcCCCceEEECccccHH-HHhh-cCC-CEEEE
Confidence 4788888 999999999998 78999999999877655444567889999999999 6554 333 88876
Q ss_pred EeC
Q 003861 612 MYT 614 (791)
Q Consensus 612 ~~~ 614 (791)
+..
T Consensus 69 ~A~ 71 (312)
T 3ko8_A 69 FAA 71 (312)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.045 Score=58.84 Aligned_cols=66 Identities=18% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|++|+.+++.|. ..|.+|++.|.+++..+.+.+.+.... +-++.+ +++|.|++
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~~----~l~e~l-----~~aDvVi~ 216 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLK----------PFGVQRFLYTGRQPRPEEAAEFQAEFV----STPELA-----AQSDFIVV 216 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHG----------GGTCCEEEEESSSCCHHHHHTTTCEEC----CHHHHH-----HHCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcchhHHHhcCceeC----CHHHHH-----hhCCEEEE
Confidence 46999999999999999998 889999999998876666655554321 223344 46798988
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+++.+
T Consensus 217 ~vp~~ 221 (330)
T 2gcg_A 217 ACSLT 221 (330)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 88764
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.073 Score=57.76 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=51.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-----------EEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-----------v~GD~t~~~~L~~a 601 (791)
+|.|+|.|.+|..++..|. +.|++|+++|.++++++.+.+.+.+. +.. .++++ ++
T Consensus 17 kI~iIG~G~mG~~la~~L~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~ 82 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLS----------KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVE---KA 82 (366)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHH---HH
T ss_pred eEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccccccccccceee-eCCHH---HH
Confidence 6999999999999999998 78999999999999998887654210 110 12222 11
Q ss_pred CCCCCcEEEEEeCCH
Q 003861 602 GITSPKAVMIMYTDK 616 (791)
Q Consensus 602 gi~~a~~viv~~~~d 616 (791)
++++|.|++++.++
T Consensus 83 -~~~aDvVilav~~~ 96 (366)
T 1evy_A 83 -YNGAEIILFVIPTQ 96 (366)
T ss_dssp -HTTCSSEEECCCHH
T ss_pred -HcCCCEEEECCChH
Confidence 35789999999863
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.06 Score=58.00 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCC--CCCcEEEEcCChh-------------hHHHHHhcCCCEEEccCCCH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNT--VGWPFVAFDLNPS-------------VVKESRKLGFPILYGDASRP 595 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~--~g~~vvvID~d~~-------------~v~~~~~~~~~~v~GD~t~~ 595 (791)
++++|.|. |-+|+.+++.|. + .|++|+++|.+++ ........+..++.+|.+|+
T Consensus 11 ~~vlVTGatG~IG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 80 (362)
T 3sxp_A 11 QTILITGGAGFVGSNLAFHFQ----------ENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNP 80 (362)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCH
Confidence 46888865 999999999998 7 8999999998654 12222334568999999999
Q ss_pred HHHHhcCCCCCcEEEEEeC
Q 003861 596 AVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~ 614 (791)
+.++++...++|+||-+..
T Consensus 81 ~~~~~~~~~~~D~vih~A~ 99 (362)
T 3sxp_A 81 LDLRRLEKLHFDYLFHQAA 99 (362)
T ss_dssp HHHHHHTTSCCSEEEECCC
T ss_pred HHHHHhhccCCCEEEECCc
Confidence 9999997778998886553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.35 Score=47.77 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--------CCCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--------GFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--------~~~~v~GD~t~~~~L~~ag 602 (791)
.++++-+|+|. |.......+ . +.+|+.+|.+++.++.+++. .+.++.||+.+. +. .
T Consensus 56 ~~~vLDlGcG~-G~~~~~la~----------~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~--~ 119 (204)
T 3njr_A 56 GELLWDIGGGS-GSVSVEWCL----------A-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA--LA--D 119 (204)
T ss_dssp TCEEEEETCTT-CHHHHHHHH----------T-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG--GT--T
T ss_pred CCEEEEecCCC-CHHHHHHHH----------c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh--cc--c
Confidence 45788888886 654444443 3 88999999999998877642 466889998762 22 2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChh
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM 643 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~ 643 (791)
.+.+|.+++....+.. .+....+.+.|+-.++....+.+
T Consensus 120 ~~~~D~v~~~~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 120 LPLPEAVFIGGGGSQA--LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp SCCCSEEEECSCCCHH--HHHHHHHHSCTTCEEEEEECSHH
T ss_pred CCCCCEEEECCcccHH--HHHHHHHhcCCCcEEEEEecCcc
Confidence 3578988766544333 44555566777767766555443
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.086 Score=54.24 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=56.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC--CCEEEccCCCHHHHHhc------
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~--~~~v~GD~t~~~~L~~a------ 601 (791)
.+.++|-|. +.+|+.+++.|. ++|.+|++.|.|++..+++.+++ ...+.+|.+|++..+++
T Consensus 2 nK~vlVTGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFL----------EAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 356777775 569999999998 89999999999999988877654 45678999999877653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 72 ~~g~iDiLVNNA 83 (247)
T 3ged_A 72 KLQRIDVLVNNA 83 (247)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 234677666443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.098 Score=56.04 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh----hHHHHH-------hcCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESR-------KLGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~----~v~~~~-------~~~~~~v~GD~t~~~~L~ 599 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.++. ..+.+. ..+..++.+|.+|++.++
T Consensus 28 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 97 (352)
T 1sb8_A 28 KVWLITGVAGFIGSNLLETLL----------KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCN 97 (352)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHH
Confidence 46899998 999999999998 78999999998653 333332 256788999999999887
Q ss_pred hcCCCCCcEEEEEeC
Q 003861 600 SAGITSPKAVMIMYT 614 (791)
Q Consensus 600 ~agi~~a~~viv~~~ 614 (791)
++ ++++|+||-+.+
T Consensus 98 ~~-~~~~d~vih~A~ 111 (352)
T 1sb8_A 98 NA-CAGVDYVLHQAA 111 (352)
T ss_dssp HH-HTTCSEEEECCS
T ss_pred HH-hcCCCEEEECCc
Confidence 75 348898887765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.1 Score=58.47 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh----hhHHHHHhcCCCEEEccCCCHHHHHhcCCCC-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----SVVKESRKLGFPILYGDASRPAVLLSAGITS- 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~----~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~- 605 (791)
.+++.|+|.|..|..+|+.|. +.|++|.+.|.++ ...+.+++.|.++..|...+ +.+ ++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~----------~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~-~~~-----~~~ 72 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLA----------KLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL-ELL-----DED 72 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHH----------HTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCG-GGG-----GSC
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChH-Hhh-----cCC
Confidence 458999999999999999998 8999999999864 34677888899998886532 222 34
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+|.||+..+=+.+|-. ...+|+.+ ++|+.+
T Consensus 73 ~d~vv~spgi~~~~p~-~~~a~~~g--i~v~~~ 102 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPM-VKKALEKQ--IPVLTE 102 (451)
T ss_dssp EEEEEECTTSCTTSHH-HHHHHHTT--CCEECH
T ss_pred CCEEEECCcCCCCChh-HHHHHHCC--CcEEeH
Confidence 8988877655555544 45566664 455543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.23 Score=53.13 Aligned_cols=138 Identities=10% Similarity=0.094 Sum_probs=85.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC-------cEEEEcCC----hhhHH----HHHhcCCCEEEccCCCH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-------PFVAFDLN----PSVVK----ESRKLGFPILYGDASRP 595 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~-------~vvvID~d----~~~v~----~~~~~~~~~v~GD~t~~ 595 (791)
.++.|+|. |.+|+.++..|. ..|. +++++|.+ +++.+ ++.+...+. .+|.+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~----------~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~ 74 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIA----------NGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAH 74 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHH----------TTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEe
Confidence 47999998 999999999997 4453 89999999 55443 233322233 2444333
Q ss_pred HHHHhcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhC-CCCcEEEEecChhh--HHHHHHCC----C
Q 003861 596 AVLLSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAF-PAIPIYARAQDMMH--LLDLKKAG----A 653 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~-p~~~iiara~~~~~--~~~L~~~G----a 653 (791)
+-+++ .+++||.|+.+.+- | ..|.. ++..+++.. |+..++... |+.+ ...+.+.- .
T Consensus 75 ~~~~~-al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S-NPv~~~t~~~~~~~~~~p~ 152 (329)
T 1b8p_A 75 ADPMT-AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG-NPANTNAYIAMKSAPSLPA 152 (329)
T ss_dssp SSHHH-HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHHHHHHTCTTSCG
T ss_pred cCcHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc-CchHHHHHHHHHHcCCCCH
Confidence 33333 25789988877642 1 24544 455677775 886655554 5543 33334432 4
Q ss_pred CeEEcCcHHHHHHHHHHHHhhcCCChHHH
Q 003861 654 TDAILENAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 654 d~Vi~p~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
++++.....-..++-..+-+.+|+++..+
T Consensus 153 ~~v~g~t~Ld~~r~~~~la~~lgv~~~~v 181 (329)
T 1b8p_A 153 KNFTAMLRLDHNRALSQIAAKTGKPVSSI 181 (329)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGE
T ss_pred HHEEEeecHHHHHHHHHHHHHhCcCHHHc
Confidence 56777776556666667777778777554
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.032 Score=61.47 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc----------------CCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD----------------ASR 594 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD----------------~t~ 594 (791)
..+|+|+|.|++|...++.+. ..|.+|++.|.++++.+.+++.|.+++.-+ .++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~----------~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATAR----------RLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------C
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcch
Confidence 468999999999999999998 899999999999999988888776543321 112
Q ss_pred H------HHHHhcCCCCCcEEEEEe--CC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 595 P------AVLLSAGITSPKAVMIMY--TD-KKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 595 ~------~~L~~agi~~a~~viv~~--~~-d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+ +.+++ -+.++|.+|.+. +. ....+..-..++.+.|+.-|+--+
T Consensus 260 ~~~~~~~~~l~e-~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 260 EYQVKQAALVAE-HIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHH-HHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhHhHHHH-HhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 1 34443 357899887663 22 122233345666777764444443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.27 Score=52.66 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCEEEeCCChhHHHHHHHhh-hhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLS-APLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~-~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
+-++.|+|+|.+|+..++.|. + ..+.+++ +.|.|+++.+.+.+ .|....+.|. ++.+++ .++|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~---------~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~--~~~l~~---~~~D 73 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNK---------IQGVKLVAACALDSNQLEWAKNELGVETTYTNY--KDMIDT---ENID 73 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHT---------CSSEEEEEEECSCHHHHHHHHHTTCCSEEESCH--HHHHTT---SCCS
T ss_pred cceEEEEcCCHHHHHHHHHHHhc---------CCCcEEEEEecCCHHHHHHHHHHhCCCcccCCH--HHHhcC---CCCC
Confidence 347999999999999999885 2 3567754 67999999877654 4664444332 334432 4789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHC-CCCeEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKA-GATDAI 657 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~-Gad~Vi 657 (791)
+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++. |....+
T Consensus 74 ~V~i~tp~~~h-~~~~~~al~~G--~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~ 128 (346)
T 3cea_A 74 AIFIVAPTPFH-PEMTIYAMNAG--LNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQS 128 (346)
T ss_dssp EEEECSCGGGH-HHHHHHHHHTT--CEEEECSCCCSCHHHHHHHHHHHHTCTTSCEEC
T ss_pred EEEEeCChHhH-HHHHHHHHHCC--CEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 99999987543 33444444433 466663 2344444333 455 666554
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.098 Score=58.22 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-----------c--c-CCCHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-----------G--D-ASRPAV 597 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-----------G--D-~t~~~~ 597 (791)
.++.|+|.|.+|..+|..|. + |++|+++|.|+++++.+.+...+... + . .+|.+
T Consensus 37 mkIaVIGlG~mG~~lA~~La----------~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~- 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA----------Q-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKH- 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH-
T ss_pred CEEEEECcCHHHHHHHHHHH----------c-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHH-
Confidence 37999999999999999997 6 99999999999999988763222110 0 0 12221
Q ss_pred HHhcCCCCCcEEEEEeCCH
Q 003861 598 LLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~d 616 (791)
.-+++||.++++++++
T Consensus 105 ---ea~~~aDvViiaVPt~ 120 (432)
T 3pid_A 105 ---DAYRNADYVIIATPTD 120 (432)
T ss_dssp ---HHHTTCSEEEECCCCE
T ss_pred ---HHHhCCCEEEEeCCCc
Confidence 1246799999998875
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.064 Score=55.48 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=67.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.|+|.|.+|+.+++.|. +.|.++++.|.++++.+++.+ .+.. . + .++++ +++|.|+.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~----------~~g~~v~v~~r~~~~~~~l~~~~~~~--~---~---~~~~~--~~~Divi~ 177 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALR----------EAGLEVWVWNRTPQRALALAEEFGLR--A---V---PLEKA--REARLLVN 177 (263)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHHTCE--E---C---CGGGG--GGCSEEEE
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccc--h---h---hHhhc--cCCCEEEE
Confidence 8999999999999999998 678899999999998777654 3442 1 1 23445 78999999
Q ss_pred EeCCHHH-HHHHHHHHHHhCCCCcEEEEecChh---hHHHHHHCCCCeEEc
Q 003861 612 MYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMM---HLLDLKKAGATDAIL 658 (791)
Q Consensus 612 ~~~~d~~-n~~~~~~ar~l~p~~~iiara~~~~---~~~~L~~~Gad~Vi~ 658 (791)
+++.... +..-......+.++..++--..++. -.+..++.|+. ++.
T Consensus 178 ~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~-~v~ 227 (263)
T 2d5c_A 178 ATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLK-VQT 227 (263)
T ss_dssp CSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCE-EEC
T ss_pred ccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCE-EEC
Confidence 9987631 1000001222344433443333332 34556778884 443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.051 Score=58.87 Aligned_cols=85 Identities=12% Similarity=0.171 Sum_probs=57.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|+ ..|.+|++.|.++...+.+.+.|...+ .+.+.+ ++++|.|+
T Consensus 164 gktvGIIG~G~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~l~el----l~~aDvV~ 225 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLK----------PFGCNLLYHDRLQMAPELEKETGAKFV----EDLNEM----LPKCDVIV 225 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGCCEEEEECSSCCCHHHHHHHCCEEC----SCHHHH----GGGCSEEE
T ss_pred CCEEeEEEeCHHHHHHHHHHH----------HCCCEEEEeCCCccCHHHHHhCCCeEc----CCHHHH----HhcCCEEE
Confidence 347999999999999999998 899999999998766666666665332 222222 35688888
Q ss_pred EEeCCHHH--HHHHHHHHHHhCCCC
Q 003861 611 IMYTDKKR--TIEAVQRLRLAFPAI 633 (791)
Q Consensus 611 v~~~~d~~--n~~~~~~ar~l~p~~ 633 (791)
++++..+. ++.-...++.+.|+.
T Consensus 226 l~~Plt~~t~~li~~~~l~~mk~ga 250 (351)
T 3jtm_A 226 INMPLTEKTRGMFNKELIGKLKKGV 250 (351)
T ss_dssp ECSCCCTTTTTCBSHHHHHHSCTTE
T ss_pred ECCCCCHHHHHhhcHHHHhcCCCCC
Confidence 88775322 222234455555553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.48 Score=50.57 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=82.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH----HHHhc------CCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK----ESRKL------GFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~----~~~~~------~~~~v~GD~t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. ..+. +++++|.|+++.+ ++++. ...+ .+. +|.+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~----------~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v-~~t-~d~~---- 69 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLAL----------IKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV-RGT-NDYK---- 69 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE-EEE-SCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE-EEc-CCHH----
Confidence 47999999999999999997 4555 9999999998754 23321 2233 321 2222
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcCc
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p~ 660 (791)
.+++||.||++.+- | ..|.. ++..+++.+|+..++.. .|+.+. ..+.+ .|. ++|+---
T Consensus 70 -a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivv-tNPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 70 -DLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI-TNPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp -GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred -HHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEe-cCchHHHHHHHHHhcCCCHHHEEeec
Confidence 45789999888642 1 34544 34566777888766655 454433 22333 344 4565544
Q ss_pred -HHHHHHHHHHHHhhcCCChHHHH
Q 003861 661 -AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 661 -~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
.+-..|+-..+-+.+|+++..++
T Consensus 148 ~~LD~~R~~~~la~~l~v~~~~v~ 171 (321)
T 3p7m_A 148 GVLDSARFRTFLADELNVSVQQVQ 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cchHHHHHHHHHHHHhCcCHHHce
Confidence 33345555666667777775543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.18 Score=53.22 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-------CCCEEEccCCCHHHHHhcC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-------GFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-------~~~~v~GD~t~~~~L~~ag 602 (791)
..+++.|+|.|.+|..+|..|. .|++|++.|.+++..+++.+. +..+ . ++. + +
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-----------aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~-~---~~~---~-~- 70 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-----------SKHEVVLQDVSEKALEAAREQIPEELLSKIEF-T---TTL---E-K- 70 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-----------TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEE-E---SSC---T-T-
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-----------cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEE-e---CCH---H-H-
Confidence 4668999999999999999993 699999999999999988765 1111 1 121 2 2
Q ss_pred CCCCcEEEEEeCCHHH
Q 003861 603 ITSPKAVMIMYTDKKR 618 (791)
Q Consensus 603 i~~a~~viv~~~~d~~ 618 (791)
+++||.||.+.+++.+
T Consensus 71 ~~~aDlVieavpe~~~ 86 (293)
T 1zej_A 71 VKDCDIVMEAVFEDLN 86 (293)
T ss_dssp GGGCSEEEECCCSCHH
T ss_pred HcCCCEEEEcCcCCHH
Confidence 6789999999998753
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.39 Score=51.22 Aligned_cols=138 Identities=13% Similarity=0.103 Sum_probs=83.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC-------cEEEEcCCh--hhH----HHHHhcCCCEEEccCCCHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-------PFVAFDLNP--SVV----KESRKLGFPILYGDASRPAV 597 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~-------~vvvID~d~--~~v----~~~~~~~~~~v~GD~t~~~~ 597 (791)
.+++|.|. |.+|+.++..|. +.|+ +++++|.++ ++. .++.+..+.++ +|.++.+.
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~----------~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~ 73 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIA----------AGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDD 73 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHH----------TTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESC
T ss_pred CEEEEECCCCHHHHHHHHHHH----------hCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccC
Confidence 36999997 999999999998 5665 899999875 222 22333334444 67765444
Q ss_pred HHhcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhC-CCCcEEEEecChhh--HHHHHHC----CCCe
Q 003861 598 LLSAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAF-PAIPIYARAQDMMH--LLDLKKA----GATD 655 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~-p~~~iiara~~~~~--~~~L~~~----Gad~ 655 (791)
+.++ ++++|.|+.+.+. | +.|+.. +..+++.. |+.+++.- .++.+ .....+. ..+.
T Consensus 74 ~~~a-~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~-snp~~~~~~~~~~~~~~~~p~~ 151 (327)
T 1y7t_A 74 PKVA-FKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVV-GNPANTNALIAYKNAPGLNPRN 151 (327)
T ss_dssp HHHH-TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHHHHHHTCTTSCGGG
T ss_pred hHHH-hCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe-CCchhhhHHHHHHHcCCCChhh
Confidence 4433 4679988876531 1 346554 45666765 77665553 34442 2223332 1344
Q ss_pred EEcCcHHHHHHHHHHHHhhcCCChHHH
Q 003861 656 AILENAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 656 Vi~p~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
++--....+.++...+-+.+|+++..+
T Consensus 152 ~yg~tkl~~er~~~~~a~~~g~~~~~v 178 (327)
T 1y7t_A 152 FTAMTRLDHNRAKAQLAKKTGTGVDRI 178 (327)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCCGGGE
T ss_pred eeccchHHHHHHHHHHHHHhCcChhhe
Confidence 566666666776666666666666443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.16 Score=54.71 Aligned_cols=109 Identities=17% Similarity=0.020 Sum_probs=71.9
Q ss_pred CCEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+ ..++.|.+ ..+.+++ +.|.|+++.+.+.+ .|.+.+ .| -++.+++ .+.|+
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~g~~~~-~~--~~~ll~~---~~~D~ 92 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEA---------EPLTEVTAIASRRWDRAKRFTERFGGEPV-EG--YPALLER---DDVDA 92 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHH---------CTTEEEEEEEESSHHHHHHHHHHHCSEEE-ES--HHHHHTC---TTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHHh---------CCCeEEEEEEcCCHHHHHHHHHHcCCCCc-CC--HHHHhcC---CCCCE
Confidence 4799999999998 68888872 4477776 66999999887654 577654 22 2334432 57899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
|+++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 93 V~i~tp~~~-h~~~~~~al~aG--k~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 146 (350)
T 3rc1_A 93 VYVPLPAVL-HAEWIDRALRAG--KHVLAEKPLTTDRPQAERLFAVARERGLLLMEN 146 (350)
T ss_dssp EEECCCGGG-HHHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCcHH-HHHHHHHHHHCC--CcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 999998764 344555555554 467773 4455554444 5567665443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.5 Score=50.50 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=82.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHH----HHHhc------CCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK----ESRKL------GFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~----~~~~~------~~~~v~GD~t~~~~L~ 599 (791)
..++.|+|.|.+|..++..|. ..|. +++++|.|+++++ ++.+. ...+. +. +|.+
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~----------~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~t-~d~~--- 71 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAG----------LKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT-GA-NDYA--- 71 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE-EE-SSGG---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE-Ee-CCHH---
Confidence 347999999999999999997 5666 9999999998754 23221 23333 21 1222
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-CCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~-~Ga--d~Vi~p 659 (791)
.+++||.||++.+- | ..|.. ++..+++.+|+..++.- .|+.+.- .+.+ .|. ++|+--
T Consensus 72 --a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivv-tNPvd~~t~~~~k~sg~p~~rviG~ 148 (324)
T 3gvi_A 72 --AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI-TNPLDAMVWALQKFSGLPAHKVVGM 148 (324)
T ss_dssp --GGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEEC-CSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred --HHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEec-CCCcHHHHHHHHHhcCCCHHHEEee
Confidence 45789999888642 2 34544 34566677888655544 4554432 2333 354 456644
Q ss_pred c-HHHHHHHHHHHHhhcCCChHHHH
Q 003861 660 N-AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 660 ~-~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
- .+-..|+-..+-+.+|+++..++
T Consensus 149 ~~~LD~~R~~~~la~~lgv~~~~v~ 173 (324)
T 3gvi_A 149 AGVLDSARFRYFLSEEFNVSVEDVT 173 (324)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cCccHHHHHHHHHHHHhCcCHHHCe
Confidence 4 23345555566666777775543
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.6 Score=42.11 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 563 VGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 563 ~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
....++++|.|+...+.+ ++.|+.+... .+-.+.++.+.-...|.+++-.-.+......+..+|+.+|++++++-
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWA-KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEE-SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEE
Confidence 345788999988765443 3467776643 33456777777778998888772234567788899999998998776
Q ss_pred ecC--hhhHHHHHHCCCCeEEcCc
Q 003861 639 AQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
..+ .+......+.|++.++.-.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP 105 (142)
T 2qxy_A 82 SAYVDKDLIINSVKAGAVDYILKP 105 (142)
T ss_dssp ESCCCHHHHHHHHHHTCSCEEESS
T ss_pred ECCCCHHHHHHHHHCCcceeEeCC
Confidence 654 4446667889999876543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.16 Score=54.20 Aligned_cols=110 Identities=11% Similarity=0.028 Sum_probs=71.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCH-HHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~-~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+....+ +|. +.+++ .++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~~~~---~~~~~ll~~---~~~D~ 70 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRE---------SAQAEVRGIASRRLENAQKMAKELAIPVAY---GSYEELCKD---ETIDI 70 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHH---------SSSEEEEEEBCSSSHHHHHHHHHTTCCCCB---SSHHHHHHC---TTCSE
T ss_pred EEEEEECchHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHHHcCCCcee---CCHHHHhcC---CCCCE
Confidence 379999999999999999972 3577777 66999999887654 4543233 333 34432 57899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
|+++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 71 V~i~tp~~~-h~~~~~~al~~g--k~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~ 125 (330)
T 3e9m_A 71 IYIPTYNQG-HYSAAKLALSQG--KPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQ 125 (330)
T ss_dssp EEECCCGGG-HHHHHHHHHHTT--CCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred EEEcCCCHH-HHHHHHHHHHCC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 999998764 344455555554 467762 3454544443 55676555433
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.052 Score=57.74 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH-Hh-cCCCEEEccCCCHHHHHhcCCC--CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RK-LGFPILYGDASRPAVLLSAGIT--SP 606 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~-~~-~~~~~v~GD~t~~~~L~~agi~--~a 606 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.+++...+. .+ .+..++.+|.+|++.++++ ++ ++
T Consensus 21 ~~vlVTGasG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~-~~~~~~ 89 (330)
T 2pzm_A 21 MRILITGGAGCLGSNLIEHWL----------PQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERA-FDSFKP 89 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHG----------GGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHH-HHHHCC
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHH-HhhcCC
Confidence 46888887 999999999998 7899999999865432111 11 3567899999999987764 23 68
Q ss_pred cEEEEEeC
Q 003861 607 KAVMIMYT 614 (791)
Q Consensus 607 ~~viv~~~ 614 (791)
|+||-+.+
T Consensus 90 D~vih~A~ 97 (330)
T 2pzm_A 90 THVVHSAA 97 (330)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88877654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.15 Score=53.78 Aligned_cols=35 Identities=31% Similarity=0.674 Sum_probs=31.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+++.|+| .|.+|..+++.|. +.|++|+++|.+++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~----------~~G~~V~~~~~~~~~ 57 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLR----------ASGYPISILDREDWA 57 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHH----------TTTCCEEEECTTCGG
T ss_pred CEEEEEcCCCHHHHHHHHHHH----------hCCCeEEEEECCccc
Confidence 4799999 9999999999998 889999999998763
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.17 Score=53.82 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=67.8
Q ss_pred CEEEeCCChhHHHH-HHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCH-HHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVL-ANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRP-AVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~l-a~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~-~~L~~agi~~a~~ 608 (791)
++.|+|+|.+|+.. ++.|. +.+.+++ +.|.|+++.+.+.+ .+....+ +|. +.+++ .++|+
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~----------~~~~~~vav~d~~~~~~~~~~~~~g~~~~~---~~~~~~l~~---~~~D~ 65 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIR----------ATGGEVVSMMSTSAERGAAYATENGIGKSV---TSVEELVGD---PDVDA 65 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHH----------HTTCEEEEEECSCHHHHHHHHHHTTCSCCB---SCHHHHHTC---TTCCE
T ss_pred eEEEEcccHHHHHhhhHHhh----------cCCCeEEEEECCCHHHHHHHHHHcCCCccc---CCHHHHhcC---CCCCE
Confidence 47899999999998 88887 4667766 67999999877654 4543222 333 33432 47899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|+...+..
T Consensus 66 V~i~tp~~~h-~~~~~~al~~G--k~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 66 VYVSTTNELH-REQTLAAIRAG--KHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEEeCChhHh-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 9999987543 33444444433 466663 2344443333 45677765543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.057 Score=58.17 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=48.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~vi 610 (791)
+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.+++. +.+.+.|... .+. +.+ +++|.|+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~-----~~l~ell-----~~aDvV~ 224 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQ----------SFGMKTIGYDPIISP-EVSASFGVQQ-----LPLEEIW-----PLCDFIT 224 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSSCH-HHHHHTTCEE-----CCHHHHG-----GGCSEEE
T ss_pred CEEEEEeECHHHHHHHHHHH----------HCCCEEEEECCCcch-hhhhhcCcee-----CCHHHHH-----hcCCEEE
Confidence 46999999999999999998 899999999998766 3445555532 133 333 4688888
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++.+..+
T Consensus 225 l~~P~t~ 231 (335)
T 2g76_A 225 VHTPLLP 231 (335)
T ss_dssp ECCCCCT
T ss_pred EecCCCH
Confidence 8887654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.069 Score=58.50 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|.|++|+.+++.+. ..|.+|+++|.++++.+.+++ .|..+.. +.++.+.++++ +.++|.+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~----------~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~-~~~~~~~l~~~-l~~aDvV 235 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIAN----------GMGATVTVLDINIDKLRQLDAEFCGRIHT-RYSSAYELEGA-VKRADLV 235 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTTTSSEE-EECCHHHHHHH-HHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHhcCCeeEe-ccCCHHHHHHH-HcCCCEE
Confidence 457999999999999999998 889999999999999888776 4544322 22333334332 3479988
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+.++..+
T Consensus 236 i~~~~~p 242 (377)
T 2vhw_A 236 IGAVLVP 242 (377)
T ss_dssp EECCCCT
T ss_pred EECCCcC
Confidence 8877543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.15 Score=51.79 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=56.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcC------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG------I 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~ag------i 603 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ .+..++.+|.+|++.++++= .
T Consensus 6 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFA----------KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45777776 789999999998 889999999999988776654 36788899999998776531 1
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-..+
T Consensus 76 g~id~lvn~Ag 86 (245)
T 1uls_A 76 GRLDGVVHYAG 86 (245)
T ss_dssp SSCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 35787776543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.12 Score=52.46 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhc--CCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSA--GITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~a--gi~~a~ 607 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+. ....+.+|.+|++.++++ ...+.|
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id 76 (246)
T 2ag5_A 7 KVIILTAAAQGIGQAAALAFA----------REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLD 76 (246)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 45777776 789999999998 8899999999999877655432 467789999999988754 245788
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.+|-..
T Consensus 77 ~lv~~A 82 (246)
T 2ag5_A 77 VLFNVA 82 (246)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887554
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.37 Score=51.33 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHH-HHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPA-VLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~-~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.+ + +|.+ .+++ .++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~~~~~~~~--~---~~~~~~l~~---~~~D~ 66 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPAAAEAIAGAYGCE--V---RTIDAIEAA---ADIDA 66 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCE--E---CCHHHHHHC---TTCCE
T ss_pred eEEEEECCCHHHHHHHHHHhh---------CCCcEEEEEECCCHHHHHHHHHHhCCC--c---CCHHHHhcC---CCCCE
Confidence 368999999999999999972 3577777 68999999887754 4554 3 4444 4432 47899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 67 V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 120 (331)
T 4hkt_A 67 VVICTPTDTH-ADLIERFARAG--KAIFCEKPIDLDAERVRACLKVVSDTKAKLMVG 120 (331)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred EEEeCCchhH-HHHHHHHHHcC--CcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 9999987543 44455555544 467763 4455554443 5667766554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.57 Score=50.08 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhc-----CCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKL-----GFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~-----~~~~v~GD~t~~~~L 598 (791)
...++.|+|.|.+|..++..|. ..|. +++++|.++++++ ++.+. ...+..+ +.
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~----------~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~---~~--- 71 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMV----------LQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSA---EY--- 71 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC---CG---
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEEC---cH---
Confidence 3558999999999999999997 4555 8999999998765 33321 1222222 22
Q ss_pred HhcCCCCCcEEEEEeCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHH--HHHH-CCC--CeEEc
Q 003861 599 LSAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAIL 658 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~---------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~~~--~L~~-~Ga--d~Vi~ 658 (791)
..+++||.+|++.+. | +.|. .++..+++..|+..++. +.||.+.- .+.+ .|. ++|+-
T Consensus 72 --~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilv-vtNPvdi~t~~~~k~~g~p~~rviG 148 (326)
T 3vku_A 72 --SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV-AANPVDILTYATWKLSGFPKNRVVG 148 (326)
T ss_dssp --GGGTTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred --HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEE-ccCchHHHHHHHHHhcCCCHHHeee
Confidence 246889988887642 2 2354 34566677788865444 45655432 2333 343 45655
Q ss_pred C-cHHHHHHHHHHHHhhcCCChHHH
Q 003861 659 E-NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 659 p-~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
- ..+-..|+-..+-+.+|+++..+
T Consensus 149 ~gt~LD~~R~~~~la~~lgv~~~~V 173 (326)
T 3vku_A 149 SGTSLDTARFRQSIAKMVNVDARSV 173 (326)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGE
T ss_pred ecccCcHHHHHHHHHHHhCCCHHHC
Confidence 3 33334455556666667777543
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.18 Score=51.64 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=55.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC----CcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g----~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a 606 (791)
.++.|+|+|.+|..+++.|. +.| ++|.+.|.++++ .|..+ .++. +.+ +++
T Consensus 5 m~i~iiG~G~mG~~~a~~l~----------~~g~~~~~~v~~~~~~~~~------~g~~~----~~~~~~~~-----~~~ 59 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIA----------NANIIKKENLFYYGPSKKN------TTLNY----MSSNEELA-----RHC 59 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHH----------HHTSSCGGGEEEECSSCCS------SSSEE----CSCHHHHH-----HHC
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCCCCCeEEEEeCCccc------CceEE----eCCHHHHH-----hcC
Confidence 36999999999999999998 677 799999999876 24322 2233 333 368
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~ 644 (791)
|.|++++..+. ...+...++...++..++.-.+.-..
T Consensus 60 D~vi~~v~~~~-~~~v~~~l~~~l~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 60 DIIVCAVKPDI-AGSVLNNIKPYLSSKLLISICGGLNI 96 (262)
T ss_dssp SEEEECSCTTT-HHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred CEEEEEeCHHH-HHHHHHHHHHhcCCCEEEEECCCCCH
Confidence 98999888642 22233333333344345554454433
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.096 Score=54.19 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcC------C
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG------I 603 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~ag------i 603 (791)
.+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+.....+.+|.+|++.++++- .
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFS----------EEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 345777776 789999999998 89999999999999888776667788999999998776531 1
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-..+
T Consensus 86 g~iD~lvnnAg 96 (266)
T 3p19_A 86 GPADAIVNNAG 96 (266)
T ss_dssp CSEEEEEECCC
T ss_pred CCCCEEEECCC
Confidence 36787766543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.42 Score=51.14 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=68.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHH-HHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPA-VLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~-~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.. .+ +|.+ .++ -.++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~g~~-~~---~~~~~~l~---~~~~D~ 68 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAA---------NPDLELVVIADPFIEGAQRLAEANGAE-AV---ASPDEVFA---RDDIDG 68 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHTTTCE-EE---SSHHHHTT---CSCCCE
T ss_pred eEEEEECCcHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHcCCc-ee---CCHHHHhc---CCCCCE
Confidence 369999999999999999972 4477776 78999999887654 4532 23 2333 332 257899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+
T Consensus 69 V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 121 (344)
T 3euw_A 69 IVIGSPTSTH-VDLITRAVERG--IPALCEKPIDLDIEMVRACKEKIGDGASKVML 121 (344)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CCEEECSCSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred EEEeCCchhh-HHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 9999987543 44455555554 467663 4444544443 444554443
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.052 Score=60.32 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=74.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|.|+.|+.+++.++ +.|++|+++|.+++... .......+.+|.+|++.+.++- +++|+|+
T Consensus 35 ~~~IlIlG~G~lg~~~~~aa~----------~lG~~v~v~d~~~~~p~--~~~ad~~~~~~~~d~~~l~~~a-~~~D~V~ 101 (419)
T 4e4t_A 35 GAWLGMVGGGQLGRMFCFAAQ----------SMGYRVAVLDPDPASPA--GAVADRHLRAAYDDEAALAELA-GLCEAVS 101 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCTTCHH--HHHSSEEECCCTTCHHHHHHHH-HHCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCCcCch--hhhCCEEEECCcCCHHHHHHHH-hcCCEEE
Confidence 457999999999999999998 89999999998876432 1222346678999999888765 7899876
Q ss_pred EEeCCHHHHHHHHHHHHHh---CCCCcEEEEecChhhHH-HHHHCCCCe
Q 003861 611 IMYTDKKRTIEAVQRLRLA---FPAIPIYARAQDMMHLL-DLKKAGATD 655 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l---~p~~~iiara~~~~~~~-~L~~~Gad~ 655 (791)
...++ .+...+..+.+. .|+...+..+.|....+ .++++|+..
T Consensus 102 ~~~e~--~~~~~~~~l~~~~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~ 148 (419)
T 4e4t_A 102 TEFEN--VPAASLDFLARTTFVAPAGRCVAVAQDRIAEKRFIEASGVPV 148 (419)
T ss_dssp ECCTT--CCHHHHHHHHTTSEESSCHHHHHHHTCHHHHHHHHHHTTCCB
T ss_pred EccCc--CCHHHHHHHHccCCcCCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 44333 333333333332 34444555556655544 467788763
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.43 Score=51.38 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .|.+. .+|.+-+-+ -.++|+|
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~--~~~~D~V 70 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTK---------SEKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLA--REDVEMV 70 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTT---------CSSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHH--CSSCCEE
T ss_pred ceEEEEccCHHHHHHHHHHHh---------CCCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhc--CCCCCEE
Confidence 479999999999999999971 3477866 66999999887654 46654 344443332 2478999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 71 ~i~tp~~~h-~~~~~~al~~g--k~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 124 (354)
T 3db2_A 71 IITVPNDKH-AEVIEQCARSG--KHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGH 124 (354)
T ss_dssp EECSCTTSH-HHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEeCChHHH-HHHHHHHHHcC--CEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEee
Confidence 999998643 34444454544 467763 3444444443 55566555443
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.17 Score=51.85 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=56.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+...+. ....+.+|.+|++.++++=
T Consensus 13 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALD----------KAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 45777776 678999999998 8899999999999887765442 5678899999998876541
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 83 ~~g~iD~lv~~Ag 95 (263)
T 3ak4_A 83 ALGGFDLLCANAG 95 (263)
T ss_dssp HHTCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 126787776543
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.27 Score=45.70 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=55.5
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCC--CCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGIT--SPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~--~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+++++|.|+...+.+ ++.|+.++..-.+-.+.++.+.-. +.|.+++-..- +..-..++..+|+.+|+++||+
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 3455555555443322 234444431112223333333223 46766665442 2445678888999999999887
Q ss_pred EecC--hhhHHHHHHCCCCeEEcCc
Q 003861 638 RAQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 638 ra~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
-..+ .+......++|++.++.-.
T Consensus 117 ls~~~~~~~~~~~~~~g~~~~l~KP 141 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKP 141 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESS
T ss_pred EeccCcHHHHHHHHHcCCCEEEeCC
Confidence 7654 6666778899999876543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.16 Score=51.55 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+... +. ...++.+|.+|++.++++-
T Consensus 12 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 81 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHH
Confidence 45777776 789999999998 88999999999988765433 22 3567789999998877641
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 82 ~~~~~~~~d~vi~~Ag 97 (255)
T 1fmc_A 82 AISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 136787776543
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.7 Score=41.54 Aligned_cols=96 Identities=15% Similarity=0.001 Sum_probs=66.1
Q ss_pred CCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-H--HHHHHHHHHHHHhCCCCcEE
Q 003861 564 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-K--KRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d--~~n~~~~~~ar~l~p~~~ii 636 (791)
...+.++|.|+...+.++ +.|+.+...+ +-.+.++.+.-...|.+++-..- + ..-...+..+|+.+|+++++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii 84 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA-SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTI 84 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES-SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC-CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEE
Confidence 457888998887655443 4577666433 34556666666778888776553 2 35577888999999999977
Q ss_pred EEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 637 ARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 637 ara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
+-.... +......++|++..+.-.
T Consensus 85 ~~s~~~~~~~~~~~~~~ga~~~l~KP 110 (136)
T 3kto_A 85 VMASSSDIPTAVRAMRASAADFIEKP 110 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEEcCCCHHHHHHHHHcChHHheeCC
Confidence 766544 446667889999877643
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.17 Score=56.31 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=54.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc----------
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---------- 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a---------- 601 (791)
.++.|+|.|-+|..+|-.|. +.|++|+.+|.|+++++.+.+-..++. ++.-++.++++
T Consensus 22 ~~IaViGlGYVGLp~A~~~A----------~~G~~V~g~Did~~kV~~ln~G~~pi~--Epgl~ell~~~~~~g~l~~tt 89 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFA----------LLGHRVVGYDVNPSIVERLRAGRPHIY--EPGLEEALGRALSSGRLSFAE 89 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTCCSSC--CTTHHHHHHHHHHTTCEEECS
T ss_pred CEEEEEccCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHcCCeeEEc
Confidence 36899999999999999998 799999999999999999976444432 44444444432
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
.+.++|+++++.+
T Consensus 90 ~~~~ai~~ad~~~I~Vp 106 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVG 106 (444)
T ss_dssp SHHHHHHTSSEEEECCC
T ss_pred CHHHHHhcCCceEEEec
Confidence 1456788888864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.34 Score=51.66 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhcC---CCE-EEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKLG---FPI-LYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~~---~~~-v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++-.|. ..+. +++++|.|+++++ ++.+.. .++ +.. ++.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~----------~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~~----- 69 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMA----------LRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GDY----- 69 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHH----------HTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CCH-----
Confidence 357999999999999999997 4555 8999999987643 222211 011 121 222
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHH----HHHHHHHHhCCCCcEEEEecChhhHH--HH-HHCCC--CeEEcC-
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTI----EAVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAILE- 659 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~----~~~~~ar~l~p~~~iiara~~~~~~~--~L-~~~Ga--d~Vi~p- 659 (791)
..+++||.+|++.+-. ..|. .++..+++..|+..++. ..|+-+.- .+ +..|. .+|+--
T Consensus 70 ~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~~~~~~k~s~~p~~rviG~g 148 (318)
T 1y6j_A 70 SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV-VSNPVDIITYMIQKWSGLPVGKVIGSG 148 (318)
T ss_dssp GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEE-CSSSHHHHHHHHHHHHTCCTTTEEECT
T ss_pred HHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCcHHHHHHHHHHHcCCCHHHEeccC
Confidence 2378999999887642 2333 45566677788877766 56665432 22 33343 367655
Q ss_pred cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 ~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..++-..+-+.+|+++..+
T Consensus 149 t~Ld~~r~~~~la~~lgv~~~~v 171 (318)
T 1y6j_A 149 TVLDSIRFRYLLSEKLGVDVKNV 171 (318)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTE
T ss_pred CchHHHHHHHHHHHHhCCCHHHe
Confidence 44444666667777778777443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.089 Score=56.60 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=49.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|++|+.+++.|. ..|.+|++.|.+++. +.+.+.|... + +-++.+ +++|.|++
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~---~-~l~~~l-----~~aDvVil 210 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAK----------GFNMRILYYSRTRKE-EVERELNAEF---K-PLEDLL-----RESDFVVL 210 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCH-HHHHHHCCEE---C-CHHHHH-----HHCSEEEE
T ss_pred CEEEEEccCHHHHHHHHHHH----------hCCCEEEEECCCcch-hhHhhcCccc---C-CHHHHH-----hhCCEEEE
Confidence 46999999999999999998 789999999999887 5555555432 1 222334 46788888
Q ss_pred EeCCHH
Q 003861 612 MYTDKK 617 (791)
Q Consensus 612 ~~~~d~ 617 (791)
+++...
T Consensus 211 ~vp~~~ 216 (334)
T 2dbq_A 211 AVPLTR 216 (334)
T ss_dssp CCCCCT
T ss_pred CCCCCh
Confidence 887654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.53 Score=50.06 Aligned_cols=134 Identities=15% Similarity=0.229 Sum_probs=81.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhc----CCC-EEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKL----GFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~----~~~-~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|..++..|. ..+. +++++|.++++++ ++.+. +.+ -+.+. .+. .
T Consensus 2 kv~ViGaG~vG~~~a~~l~----------~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~-----~ 65 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVA----------RQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT-NDY-----G 65 (314)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE-SSS-----G
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC-CCH-----H
Confidence 4789999999999999887 4554 8999999998754 23321 111 23332 222 2
Q ss_pred CCCCCcEEEEEeCCH-----------HHHHHH----HHHHHHhCCCCcEEEEecChhhHHH---HHHCC--CCeEEcCc-
Q 003861 602 GITSPKAVMIMYTDK-----------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLLD---LKKAG--ATDAILEN- 660 (791)
Q Consensus 602 gi~~a~~viv~~~~d-----------~~n~~~----~~~ar~l~p~~~iiara~~~~~~~~---L~~~G--ad~Vi~p~- 660 (791)
.+++||.+|++.+.. ..|..+ +..+++.+|+..+ ..+.||.+.-- .+..| .++|+---
T Consensus 66 a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~v-ivvtNPvd~~t~~~~k~~g~p~~rviG~~t 144 (314)
T 3nep_X 66 PTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTI-IVVANPLDVMTYVAYEASGFPTNRVMGMAG 144 (314)
T ss_dssp GGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEE-EECCSSHHHHHHHHHHHHTCCGGGEEECCH
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEE-EecCCchhHHHHHHHHhcCCChHHEEeecC
Confidence 467899998887542 345543 4555666787654 44556554432 23345 34566554
Q ss_pred HHHHHHHHHHHHhhcCCChHHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
.+-..|+-..+-+.+|+++..++
T Consensus 145 ~LD~~R~~~~la~~lgv~~~~v~ 167 (314)
T 3nep_X 145 VLDTGRFRSFIAEELDVSVRDVQ 167 (314)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEE
T ss_pred chHHHHHHHHHHHHhCcCHHHeE
Confidence 33345666666667788775543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.073 Score=56.62 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH---HHHHh-----cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK-----LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v---~~~~~-----~~~~~v~GD~t~~~~L~~ag 602 (791)
++++|.| .|-+|+.+++.|. ++|++|++++.+++.. +.+.+ .+..++.||.+|++.++++
T Consensus 6 ~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 74 (337)
T 2c29_D 6 ETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEA- 74 (337)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHH-
T ss_pred CEEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHH-
Confidence 4688888 7999999999998 7899999888877633 22211 2366889999999887765
Q ss_pred CCCCcEEEEE
Q 003861 603 ITSPKAVMIM 612 (791)
Q Consensus 603 i~~a~~viv~ 612 (791)
++++|+|+-+
T Consensus 75 ~~~~d~Vih~ 84 (337)
T 2c29_D 75 IKGCTGVFHV 84 (337)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEe
Confidence 3567877754
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.32 Score=52.60 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=63.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhH----HHHHh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVV----KESRK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v----~~~~~--~~ 584 (791)
+.+|+|+|.|..|..+++.|. ..|. .++++|.|. .++ +++++ .+
T Consensus 118 ~~~VlvvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 187 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILA----------TSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE 187 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred CCeEEEECCCHHHHHHHHHHH----------hCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC
Confidence 568999999999999999998 6777 689999874 122 22332 22
Q ss_pred --CCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhC
Q 003861 585 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAF 630 (791)
Q Consensus 585 --~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~ 630 (791)
+..+..+.++++.+.+ ++++|.||.++++.+ .-..+-..+++.+
T Consensus 188 v~v~~~~~~i~~~~~~~~--~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~ 234 (353)
T 3h5n_A 188 ISVSEIALNINDYTDLHK--VPEADIWVVSADHPFNLINWVNKYCVRAN 234 (353)
T ss_dssp SEEEEEECCCCSGGGGGG--SCCCSEEEECCCCSTTHHHHHHHHHHHTT
T ss_pred CeEEEeecccCchhhhhH--hccCCEEEEecCChHHHHHHHHHHHHHhC
Confidence 3355566666654555 899999988888766 5556666777765
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.17 Score=53.90 Aligned_cols=73 Identities=19% Similarity=0.080 Sum_probs=54.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh----------hhHHHHHh---cCCCEEEccCCCHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----------SVVKESRK---LGFPILYGDASRPAV 597 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~----------~~v~~~~~---~~~~~v~GD~t~~~~ 597 (791)
++++|.|. |-+|+.+++.|. +.|++|+++|.++ +..+++.+ .+..++.+|.+|++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~ 72 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELL----------EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGA 72 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHH
Confidence 46888875 999999999998 7899999998643 33444432 467889999999988
Q ss_pred HHhcCC-CCCcEEEEEeC
Q 003861 598 LLSAGI-TSPKAVMIMYT 614 (791)
Q Consensus 598 L~~agi-~~a~~viv~~~ 614 (791)
++++=- .++|+||-+.+
T Consensus 73 ~~~~~~~~~~d~vih~A~ 90 (348)
T 1ek6_A 73 LQRLFKKYSFMAVIHFAG 90 (348)
T ss_dssp HHHHHHHCCEEEEEECCS
T ss_pred HHHHHHhcCCCEEEECCC
Confidence 876411 16888877654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.27 Score=52.21 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=67.6
Q ss_pred CEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|+ ..++.|.+ ..+.++++.|.|+++.+++.+ .+.+..+.| +.+.| -+++|+|+
T Consensus 4 ~igiIG~G~ig~~~~~~~l~~---------~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~--~~~~l----~~~~D~V~ 68 (323)
T 1xea_A 4 KIAMIGLGDIAQKAYLPVLAQ---------WPDIELVLCTRNPKVLGTLATRYRVSATCTD--YRDVL----QYGVDAVM 68 (323)
T ss_dssp EEEEECCCHHHHHTHHHHHTT---------STTEEEEEECSCHHHHHHHHHHTTCCCCCSS--TTGGG----GGCCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHHh---------CCCceEEEEeCCHHHHHHHHHHcCCCccccC--HHHHh----hcCCCEEE
Confidence 589999999998 48898861 346788899999999887654 455432222 23344 25799999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHCCCCeEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAI 657 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~----L~~~Gad~Vi 657 (791)
++++++.. ...+..+-+.+ .+|++. +.+.+..+. .++.|....+
T Consensus 69 i~tp~~~h-~~~~~~al~~G--k~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 69 IHAATDVH-STLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp ECSCGGGH-HHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EECCchhH-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 99987543 33343343433 456653 234443333 3556776555
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.19 Score=51.29 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------------cCCCEEEccCCCHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------------LGFPILYGDASRPAV 597 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------------~~~~~v~GD~t~~~~ 597 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.
T Consensus 8 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 77 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLA----------GEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARA 77 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHH
Confidence 45777765 789999999998 789999999999988765532 346788999999987
Q ss_pred HHhc--CC----CCC-cEEEEEe
Q 003861 598 LLSA--GI----TSP-KAVMIMY 613 (791)
Q Consensus 598 L~~a--gi----~~a-~~viv~~ 613 (791)
++++ .+ .+. |.+|-..
T Consensus 78 ~~~~~~~~~~~~g~i~d~vi~~A 100 (264)
T 2pd6_A 78 ARCLLEQVQACFSRPPSVVVSCA 100 (264)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECC
T ss_pred HHHHHHHHHHHhCCCCeEEEECC
Confidence 7654 11 233 7776654
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.5 Score=50.33 Aligned_cols=134 Identities=22% Similarity=0.211 Sum_probs=82.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHH-HH---hc---CCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE-SR---KL---GFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~-~~---~~---~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++-.|. ..+. +++++|.|+++++. +. +. ..+ -+.+| +.+
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~----------~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~--~~~---- 68 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMA----------QQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG--EYS---- 68 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEEC--CGG----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------cCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEEC--CHH----
Confidence 457999999999999999886 3343 89999999987653 22 21 011 13332 222
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HHHH-CCCC--eEEcC-
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGAT--DAILE- 659 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~~----~~~ar~l~p~~~iiara~~~~~~~--~L~~-~Gad--~Vi~p- 659 (791)
.+++||.||++.+-. ..|..+ +..+++.+|+..++. ..||.+.- .+++ .|.+ +|+--
T Consensus 69 -a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~g 146 (318)
T 1ez4_A 69 -DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV-AANPVDILTYATWKFSGFPKERVIGSG 146 (318)
T ss_dssp -GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred -HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-eCCcHHHHHHHHHHHcCCCHHHEEecc
Confidence 268999998887532 244443 455566689877776 56665542 3333 3443 67654
Q ss_pred cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 ~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..++-..+-+.+|+++..+
T Consensus 147 t~LD~~R~~~~la~~lgv~~~~v 169 (318)
T 1ez4_A 147 TSLDSSRLRVALGKQFNVDPRSV 169 (318)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGE
T ss_pred ccchHHHHHHHHHHHhCcChhHE
Confidence 43434566666666677776544
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=92.45 E-value=0.54 Score=50.10 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=70.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC---Cc-EEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WP-FVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g---~~-vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|.+|+..++.|. +.+ .+ +.+.|.|+++.+++. +.+.+..+.|. ++.|++ .+.|
T Consensus 4 rigiiG~G~ig~~~~~~l~----------~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~--~~ll~~---~~vD 68 (334)
T 3ohs_X 4 RWGIVSVGLISSDFTAVLQ----------TLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSY--EELAKD---PNVE 68 (334)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSH--HHHHHC---TTCC
T ss_pred EEEEECchHHHHHHHHHHH----------hCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCH--HHHhcC---CCCC
Confidence 6899999999999999986 332 34 445699999987765 45665455433 344443 5789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|.-..+
T Consensus 69 ~V~i~tp~~~H-~~~~~~al~~G--khVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 69 VAYVGTQHPQH-KAAVMLCLAAG--KAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp EEEECCCGGGH-HHHHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcHHH-HHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 99999987643 44455555554 467774 4455555544 455665443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.15 Score=54.68 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHH-H---h----cCCC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKES-R---K----LGFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~-~---~----~~~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..|. ..|+ +|+++|.|+++++.. . + .+.. -+.+- +|. ++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la----------~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~e 74 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCA----------LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-YSY---EA 74 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-CSH---HH
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe-CCH---HH
Confidence 357999999999999999998 6777 899999999877652 1 1 1111 11110 232 22
Q ss_pred cCCCCCcEEEEEe--CC------------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHHC-C--CCe
Q 003861 601 AGITSPKAVMIMY--TD------------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKKA-G--ATD 655 (791)
Q Consensus 601 agi~~a~~viv~~--~~------------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~~--~~L~~~-G--ad~ 655 (791)
.+++||.||++. +. | ..|. .++..+++..|+..++ .+.|+.+. ..+.+. | .++
T Consensus 75 -a~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi-~~tNP~~~~t~~~~~~~~~~~~r 152 (331)
T 1pzg_A 75 -ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII-VVTNPLDCMVKVMCEASGVPTNM 152 (331)
T ss_dssp -HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEE-ECCSSHHHHHHHHHHHHCCCGGG
T ss_pred -HhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE-EEcCchHHHHHHHHHhcCCChhc
Confidence 257899999887 21 1 1232 3456666778876554 34555442 233232 3 235
Q ss_pred EEcC-cHHHHHHHHHHHHhhcCCChHHH
Q 003861 656 AILE-NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 656 Vi~p-~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
|+-- ..+-..++-+.+-+.+|+++..+
T Consensus 153 viG~gt~LD~~R~~~~la~~lgv~~~~v 180 (331)
T 1pzg_A 153 ICGMACMLDSGRFRRYVADALSVSPRDV 180 (331)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred EEeccchHHHHHHHHHHHHHhCCCHHHc
Confidence 5554 33323455556666667766443
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.22 Score=50.72 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=55.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------g 602 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+. ....+.+|.+|++.++++ .
T Consensus 2 ~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred EEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4677775 789999999998 8899999999999887766542 466788999999887764 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 72 ~g~iD~lvnnA 82 (248)
T 3asu_A 72 WCNIDILVNNA 82 (248)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCCEEEECC
Confidence 23678777644
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.47 Score=50.19 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=83.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhh---HHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSV---VKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~---v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
..++.|+|.|.+|..++..+. ..|. +++++|.|++. ..++.+...+-+.+. +| + ..+++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~----------~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d---~--~~l~~ 77 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAIS----------AKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KD---L--SASAH 77 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECCC-----CHHHHHHHTCTTEEEE-SC---G--GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CC---H--HHHCC
Confidence 357999999999999999887 5667 99999999863 223333222222221 22 2 23689
Q ss_pred CcEEEEEeCC--------H--HHHH----HHHHHHHHhCCCCcEEEEecChhh--HHHHHHC-C--CCeEEcC-cHHHHH
Q 003861 606 PKAVMIMYTD--------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMH--LLDLKKA-G--ATDAILE-NAETSL 665 (791)
Q Consensus 606 a~~viv~~~~--------d--~~n~----~~~~~ar~l~p~~~iiara~~~~~--~~~L~~~-G--ad~Vi~p-~~~~~~ 665 (791)
||.||.+.+- | .+|. .++..+++..|+..++. +.|+.+ ...+++. | .++|+-- ..+-..
T Consensus 78 aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~~ 156 (303)
T 2i6t_A 78 SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLV-ASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQ 156 (303)
T ss_dssp CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-cCChHHHHHHHHHHhcCCCHHHeeCCCCCchHH
Confidence 9999888621 1 2343 34556666678866555 555443 3334442 3 3467766 454456
Q ss_pred HHHHHHHhhcCCChHHHH
Q 003861 666 QLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 666 ~la~~~l~~l~~~~~~~~ 683 (791)
++-..+-+.+|+++..++
T Consensus 157 R~~~~la~~lgv~~~~v~ 174 (303)
T 2i6t_A 157 RLQYIITNVLKAQTSGKE 174 (303)
T ss_dssp HHHHHHHHTSCCTTGGGG
T ss_pred HHHHHHHHHcCCChHHeE
Confidence 777777788888876654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.079 Score=49.38 Aligned_cols=105 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred CCCCEEEeCC----ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 530 GSEPVVIVGF----GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~----G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
...++.|+|. |++|..+++.|. +.|+++..++.+.+.+ .|.++ +.+ ++++ .+.
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~----------~~G~~V~~vnp~~~~i-----~G~~~-~~s------~~el-~~~ 69 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLL----------SKGFEVLPVNPNYDEI-----EGLKC-YRS------VREL-PKD 69 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHH----------HTTCEEEEECTTCSEE-----TTEEC-BSS------GGGS-CTT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHH----------HCCCEEEEeCCCCCeE-----CCeee-cCC------HHHh-CCC
Confidence 3567999999 999999999998 7899866666553322 23221 111 2222 136
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHCCCCeEEcCc
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+|.++++++ ++.-..++..+.+.+++ .++... .+++-.+..++.|+. ++-|+
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~-~i~~~~~~~~~~l~~~a~~~Gi~-~igpn 123 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFK-KLWFQPGAESEEIRRFLEKAGVE-YSFGR 123 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCC-EEEECTTSCCHHHHHHHHHHTCE-EECSC
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCC-EEEEcCccHHHHHHHHHHHCCCE-EEcCC
Confidence 899999988 46666666666666543 244322 244555566777775 55666
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.75 Score=49.21 Aligned_cols=137 Identities=14% Similarity=0.035 Sum_probs=84.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHH----HHhc----CCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~----~~~~----~~~~v~GD~t~~~~L~ 599 (791)
..+++.|+|.|.+|..++..|. ..|. +++++|.++++.+. +.+. ...-+.+. +|. +
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la----------~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t-~d~---~ 85 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVL----------MKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG-KDY---S 85 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHH----------HHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEE-SSS---C
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEc-CCH---H
Confidence 3568999999999999999987 5665 89999999987543 2221 11222221 221 2
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHHH--H-HHCCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLLD--L-KKAGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~~~--L-~~~Ga--d~Vi~p 659 (791)
.+++||.+|++.+. | ..|..+ +..+++..|+..++. +.|+.+.-- + +..|- ++|+--
T Consensus 86 --~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilv-vtNPvdi~t~~~~k~sg~p~~rViG~ 162 (330)
T 3ldh_A 86 --VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKEL-HPELGTDKNKQDWKLSGLPMHRIIGS 162 (330)
T ss_dssp --SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHCCCGGGEECC
T ss_pred --HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEe-CCCccHHHHHHHHHHhCCCHHHeecc
Confidence 37899998887532 3 466554 456667788865554 445544322 2 33353 455554
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
..+-..|+-..+-+.+|+++..++
T Consensus 163 gt~LDs~R~~~~lA~~lgv~~~~V~ 187 (330)
T 3ldh_A 163 GCNLDSARFRYLMGERLGVHSCLVI 187 (330)
T ss_dssp TTHHHHHHHHHHHHHHHTSCTTTCC
T ss_pred cCchhHHHHHHHHHHHhCCCHHHeE
Confidence 333345666666667777775543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.3 Score=52.58 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCC-CCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNT-VGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~-~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+..++.|.+ . .+.+++ +.|.|+++.+.+.+ .+. ..+. +-++.+++ .++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~---------~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~~--~~~~ll~~---~~~D~ 78 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEK---------HADRAELIDVCDIDPAALKAAVERTGA-RGHA--SLTDMLAQ---TDADI 78 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHH---------TTTTEEEEEEECSSHHHHHHHHHHHCC-EEES--CHHHHHHH---CCCSE
T ss_pred ceEEEEcCcHHHHHHHHHHHh---------CCCCeEEEEEEcCCHHHHHHHHHHcCC-ceeC--CHHHHhcC---CCCCE
Confidence 479999999999999999972 3 477766 77999999887654 465 2332 22445554 57899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 79 V~i~tp~~~h-~~~~~~al~~g--k~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~ 133 (354)
T 3q2i_A 79 VILTTPSGLH-PTQSIECSEAG--FHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVK 133 (354)
T ss_dssp EEECSCGGGH-HHHHHHHHHTT--CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEECCCcHHH-HHHHHHHHHCC--CCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999987643 44444454443 467763 3454444443 55577665443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.45 Score=50.96 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++-|+|+|.+|+. .+..+.+ ..+.+++ +.|.|+++.+++. +.+.+-.+.|. ++.|++ ++.|+|
T Consensus 25 rigiIG~G~ig~~~~~~~~~~---------~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~--~ell~~---~~iDaV 90 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQD---------AENCVVTAIASRDLTRAREMADRFSVPHAFGSY--EEMLAS---DVIDAV 90 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHH---------CSSEEEEEEECSSHHHHHHHHHHHTCSEEESSH--HHHHHC---SSCSEE
T ss_pred EEEEEcChHHHHHHHHHHHHh---------CCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCH--HHHhcC---CCCCEE
Confidence 6999999999985 5677762 4577776 5699999988765 46776666543 344543 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|.-..+.
T Consensus 91 ~I~tP~~~H-~~~~~~al~aG--khVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~ 143 (350)
T 4had_A 91 YIPLPTSQH-IEWSIKAADAG--KHVVCEKPLALKAGDIDAVIAARDRNKVVVTEA 143 (350)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCCCSSGGGGHHHHHHHHHHTCCEEEC
T ss_pred EEeCCCchh-HHHHHHHHhcC--CEEEEeCCcccchhhHHHHHHHHHHcCCceeEe
Confidence 999998643 44455555554 467773 3444444443 4556655443
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.17 Score=52.01 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=54.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+. ...++.+|.+|++.++++=
T Consensus 17 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 86 (278)
T 2bgk_A 17 KVAIITGGAGGIGETTAKLFV----------RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 86 (278)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 45777775 789999999998 8899999999998876554321 4678899999999877641
Q ss_pred ---CCCCcEEEEEe
Q 003861 603 ---ITSPKAVMIMY 613 (791)
Q Consensus 603 ---i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 87 ~~~~~~id~li~~A 100 (278)
T 2bgk_A 87 IAKHGKLDIMFGNV 100 (278)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 13678777544
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=92.27 E-value=0.17 Score=51.27 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=55.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhcC---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG--- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~ag--- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++=
T Consensus 7 k~vlVtGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (251)
T 1zk4_A 7 KVAIITGGTLGIGLAIATKFV----------EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHH
Confidence 45777776 789999999998 789999999999987665433 34678899999998776531
Q ss_pred ---CCCCcEEEEEeC
Q 003861 603 ---ITSPKAVMIMYT 614 (791)
Q Consensus 603 ---i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 77 ~~~~~~id~li~~Ag 91 (251)
T 1zk4_A 77 EKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 135787776543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.26 Score=49.36 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=56.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc--CCC-C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--GIT-S 605 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a--gi~-~ 605 (791)
.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++ .+. .
T Consensus 3 ~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 72 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYD----------AEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSI 72 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred EEEEecCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhc
Confidence 5777776 679999999998 889999999999999887765 3578899999999987764 332 2
Q ss_pred CcEEEEEeC
Q 003861 606 PKAVMIMYT 614 (791)
Q Consensus 606 a~~viv~~~ 614 (791)
.|.+|-..+
T Consensus 73 ~d~lv~~Ag 81 (230)
T 3guy_A 73 PSTVVHSAG 81 (230)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEeCC
Confidence 377765543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.084 Score=56.28 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=49.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|+ ..|.+|++.|.+++.. .+.+.|... . +-++.++ ++|.|+
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~~-~~~~~g~~~--~--~l~ell~-----~aDvVv 201 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIAN----------AMGMKVLAYDILDIRE-KAEKINAKA--V--SLEELLK-----NSDVIS 201 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHH----------HTTCEEEEECSSCCHH-HHHHTTCEE--C--CHHHHHH-----HCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCCcchh-HHHhcCcee--c--CHHHHHh-----hCCEEE
Confidence 346999999999999999998 8899999999998764 345556542 1 2234443 678888
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++.+...
T Consensus 202 l~~P~~~ 208 (313)
T 2ekl_A 202 LHVTVSK 208 (313)
T ss_dssp ECCCCCT
T ss_pred EeccCCh
Confidence 8877543
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.12 Score=55.25 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=55.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-----CcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-----WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GIT 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-----~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi~ 604 (791)
+++|.|. |-+|+.+++.|. +.| ++|++++.+++... ....+..++.+|.+|++.++++ +.+
T Consensus 3 ~vlVtGatG~iG~~l~~~L~----------~~g~~~~~~~V~~~~r~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 71 (364)
T 2v6g_A 3 VALIVGVTGIIGNSLAEILP----------LADTPGGPWKVYGVARRTRPAW-HEDNPINYVQCDISDPDDSQAKLSPLT 71 (364)
T ss_dssp EEEEETTTSHHHHHHHHHTT----------STTCTTCSEEEEEEESSCCCSC-CCSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred EEEEECCCcHHHHHHHHHHH----------hCCCCCCceEEEEEeCCCCccc-cccCceEEEEeecCCHHHHHHHHhcCC
Confidence 5788885 999999999998 788 89999998876533 2234678999999999988765 443
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
++|+||-+..
T Consensus 72 ~~d~vih~a~ 81 (364)
T 2v6g_A 72 DVTHVFYVTW 81 (364)
T ss_dssp TCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 4898877643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.34 Score=51.10 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-------CCCEEEccCCCHHHHHhcC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-------GFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-------~~~~v~GD~t~~~~L~~ag 602 (791)
..++|+.+|+|..+..... +.+ ..|..|+.||.|++.++.+++. .+.++.||+.+. .
T Consensus 122 ~g~rVLDIGcG~G~~ta~~-lA~---------~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l---~--- 185 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGIL-LSH---------VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI---D--- 185 (298)
T ss_dssp TTCEEEEECCCSSCHHHHH-HHH---------TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG---G---
T ss_pred CcCEEEEECCCccHHHHHH-HHH---------ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC---C---
Confidence 4568999999975433211 220 3578999999999998887742 357889999763 2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 603 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 603 i~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
-+.+|+|++...-++..-......|.+.|+-.++++.
T Consensus 186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 2678988775443222233455666778887777764
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.51 Score=53.33 Aligned_cols=93 Identities=14% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCC----------EEEc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFP----------ILYG 590 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~----------~v~G 590 (791)
++|.|+|.|.+|..+|..|. +.|++|++.|.|++.++++.+ .|.. -+..
T Consensus 6 ~kVgVIGaG~MG~~IA~~la----------~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 75 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAA----------SHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP 75 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE
Confidence 47999999999999999998 789999999999999887653 2210 0111
Q ss_pred cCCCHHHHHhcCCCCCcEEEEEeCCHHHHH-HHHHHHHHhCCCCcEEEEec
Q 003861 591 DASRPAVLLSAGITSPKAVMIMYTDKKRTI-EAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 591 D~t~~~~L~~agi~~a~~viv~~~~d~~n~-~~~~~ar~l~p~~~iiara~ 640 (791)
.+|. + .+++||.||.+..++.+-. .+...+.+..+.-.|++...
T Consensus 76 -~~~~---~--~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilasnt 120 (483)
T 3mog_A 76 -VTDI---H--ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNT 120 (483)
T ss_dssp -ECCG---G--GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -eCCH---H--HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecC
Confidence 1222 2 3678999999998864322 22233444333335665433
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.17 Score=52.11 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=56.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHhcCCCEEEccCCCHHHHHhc------CC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA------GI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~~~~~~v~GD~t~~~~L~~a------gi 603 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++. .+.+++.+...+.+|.+|++.++++ ..
T Consensus 28 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLL----------EHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQT 97 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHH----------HTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 46777776 679999999998 889999999999876 4445667789999999999877653 12
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
.+.|.+|-..+
T Consensus 98 g~iD~lv~nAg 108 (260)
T 3gem_A 98 SSLRAVVHNAS 108 (260)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCC
Confidence 46787776543
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.54 Score=43.11 Aligned_cols=97 Identities=8% Similarity=-0.052 Sum_probs=62.8
Q ss_pred CCcEEEEcCChhhHHHHH----hcCC-CEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Q 003861 564 GWPFVAFDLNPSVVKESR----KLGF-PILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~~----~~~~-~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iia 637 (791)
..+|+++|.|+...+.++ +.+. ..+..-.+-.+.++.+.-.+.|.+++-..- +..-...+..+|+.+|+++|++
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 345777777776654443 2221 222222233456666666778888776653 3456778889999999999877
Q ss_pred EecCh--hhHHHHHHCCCCeEEcCc
Q 003861 638 RAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 638 ra~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
-..+. +......+.|++.++.-.
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp 124 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKE 124 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecC
Confidence 76654 466778899999877654
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.38 Score=42.96 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=63.9
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++.++|.|+...+.+ ++.|+.++.--.+-.+.++.+.-.+.|.+++-..- +......+..+|+.+|++++++-.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 3578899988765444 34666665222223344554444678988877653 345677889999999998877766
Q ss_pred cCh--hhHHHHHHCCCCeEEcCc
Q 003861 640 QDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 ~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
.+. +......+.|++..+.-.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp 104 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKK 104 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGG
T ss_pred CCCChHHHHHHHHhCCCEEEeCC
Confidence 544 467778899999876643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.78 Score=49.03 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=81.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHH----Hhc------CCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKES----RKL------GFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~----~~~------~~~~v~GD~t~~~~L~ 599 (791)
+.++.|+|.|.+|..++..|. ..|+ +|+++|.|+++++.. .+. ...+ .+. +|.+
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la----------~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i-~~t-~d~~--- 78 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLG----------QKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKI-FGE-NNYE--- 78 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCE-EEE-SCGG---
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEE-EEC-CCHH---
Confidence 457999999999999999998 6787 899999999887642 111 1122 211 2222
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHHHC---CCCeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLKKA---GATDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~~~---Gad~Vi~p 659 (791)
.+++||.||.+.+- | .+|..+ +..+.+..|+..++. +.|+.+. ..+.+. -.++|+--
T Consensus 79 --al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~~~~t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 79 --YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC-ITNPLDAMVYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp --GGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred --HHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEE-ecCchHHHHHHHHHhcCCChhhEEEe
Confidence 36789999988722 1 235443 455566678866554 4555442 333332 24556655
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..|+-..+-+.+|+++..+
T Consensus 156 ~t~Ld~~R~~~~la~~lgv~~~~v 179 (328)
T 2hjr_A 156 SGVLDSARFRCNLSRALGVKPSDV 179 (328)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CcHHHHHHHHHHHHHHhCCCHHHe
Confidence 34444455555556667766443
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.1 Score=54.51 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=55.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC-CCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi-~~a~ 607 (791)
++++|.|. |.+|+.+++.|. +. |++|++++.+++..+ . ..+..++.+|.+|++.++++=- .++|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~-~-~~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLR----------KLYGTENVIASDIRKLNTD-V-VNSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHH----------HHHCGGGEEEEESCCCSCH-H-HHSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred ceEEEECCccHHHHHHHHHHH----------HhCCCCEEEEEcCCCcccc-c-cCCCceEEecCCCHHHHHHHHhhcCCC
Confidence 46899988 999999999998 66 899999998776532 2 2367899999999988876511 1688
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
+||-+..
T Consensus 71 ~vih~a~ 77 (312)
T 2yy7_A 71 DIYLMAA 77 (312)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 8877654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.16 Score=57.08 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=50.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|+|.+|+.+++.|. ..|.+|++.|.|+++.+.+...+..+ ++.+ .-...+|.++
T Consensus 265 GKtVvVtGaGgIG~aiA~~La----------a~GA~Viv~D~~~~~a~~Aa~~g~dv-----~~le----e~~~~aDvVi 325 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALK----------QAGARVIVTEIDPICALQATMEGLQV-----LTLE----DVVSEADIFV 325 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEE-----CCGG----GTTTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHhCCcc-----CCHH----HHHHhcCEEE
Confidence 357899999999999999998 89999999999999888877776532 2222 1234688777
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.++++
T Consensus 326 ~atG~ 330 (488)
T 3ond_A 326 TTTGN 330 (488)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 66654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.18 Score=51.63 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c----CCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~----~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ...++.+|.+|++.++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELA----------RNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLF 77 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHH
Confidence 45777776 789999999998 789999999999987655432 1 4667889999998776541
Q ss_pred ------CCCCcEEEEEeC
Q 003861 603 ------ITSPKAVMIMYT 614 (791)
Q Consensus 603 ------i~~a~~viv~~~ 614 (791)
.. .|.+|-..+
T Consensus 78 ~~~~~~~g-id~lv~~Ag 94 (260)
T 2z1n_A 78 EKARDLGG-ADILVYSTG 94 (260)
T ss_dssp HHHHHTTC-CSEEEECCC
T ss_pred HHHHHhcC-CCEEEECCC
Confidence 12 787776554
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=92.11 E-value=1.3 Score=40.02 Aligned_cols=109 Identities=10% Similarity=0.051 Sum_probs=71.9
Q ss_pred CCCcEEEEcCChhhHHHH----HhcCCCEEEcc-CCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHH--hCCCCc
Q 003861 563 VGWPFVAFDLNPSVVKES----RKLGFPILYGD-ASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRL--AFPAIP 634 (791)
Q Consensus 563 ~g~~vvvID~d~~~v~~~----~~~~~~~v~GD-~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~--l~p~~~ 634 (791)
....+.++|.|+...+.+ ++.|+.....- .+-.+.++.+.-.+.|.+++-..-. ......+..+|+ .+|+++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 356789999998865443 45666632222 3345677777778899888776543 456777888888 678888
Q ss_pred EEEEec--ChhhHHHHHHCCCCeEEcCcHHHHHHHHHHH
Q 003861 635 IYARAQ--DMMHLLDLKKAGATDAILENAETSLQLGSKL 671 (791)
Q Consensus 635 iiara~--~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~ 671 (791)
+++-.. +.+......++||+.++.-......++...+
T Consensus 84 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i 122 (144)
T 3kht_A 84 IVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRI 122 (144)
T ss_dssp EEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHH
Confidence 887765 4566667889999998765541234444333
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.068 Score=52.65 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=54.7
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
..+++|.| .|.+|+.+++.|. +.|+ +|++++.+++. ...+..++.+|.+|++.++++- +|
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~----------~~g~~~~V~~~~r~~~~----~~~~~~~~~~D~~~~~~~~~~~---~d 67 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRIL----------SEPTLAKVIAPARKALA----EHPRLDNPVGPLAELLPQLDGS---ID 67 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HCTTCCEEECCBSSCCC----CCTTEECCBSCHHHHGGGCCSC---CS
T ss_pred CceEEEECCCcHHHHHHHHHHH----------hCCCCCeEEEEeCCCcc----cCCCceEEeccccCHHHHHHhh---hc
Confidence 34789998 6999999999998 7787 99999998875 2345677889999999888765 89
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
.+|-+.+
T Consensus 68 ~vi~~a~ 74 (215)
T 2a35_A 68 TAFCCLG 74 (215)
T ss_dssp EEEECCC
T ss_pred EEEECee
Confidence 8887765
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.2 Score=51.81 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+ . ...++.+|.+|++.++++
T Consensus 32 k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 101 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFA----------KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKK 101 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHH
Confidence 45777765 789999999998 789999999999987665432 2 466788999999877653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 102 ~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 102 VKAEIGDVSILVNNAG 117 (272)
T ss_dssp HHHHTCCCSEEEECCC
T ss_pred HHHHCCCCcEEEECCC
Confidence 1246788776653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.24 Score=50.65 Aligned_cols=74 Identities=9% Similarity=0.040 Sum_probs=54.4
Q ss_pred CCCCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---HHHHHh--cCCCEEEccCCCHHHHHhc
Q 003861 530 GSEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKESRK--LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---v~~~~~--~~~~~v~GD~t~~~~L~~a 601 (791)
..++++|.|. |.+|+.+++.|. ++|++|++++.+++. .+++.+ ....++.+|.+|++.++++
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACK----------REGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHH----------HcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 4567888886 489999999998 889999999887544 333322 2478899999999877653
Q ss_pred ------CCCCCcEEEEEe
Q 003861 602 ------GITSPKAVMIMY 613 (791)
Q Consensus 602 ------gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 83 ~~~~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHHHHCSCEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 123678777554
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.1 Score=55.53 Aligned_cols=72 Identities=10% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChh-----hHHHHHhcCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~-----~v~~~~~~~~~~v~GD~t~~~~L~~agi 603 (791)
++++|.| .|-+|+.+++.|. +. |++|+++|.+++ ..+.+...+..++.+|.+|++.++++ +
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~----------~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~ 73 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVY----------NNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKL-A 73 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHH-H
T ss_pred cEEEEeCCccHHHHHHHHHHH----------HhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHH-h
Confidence 3688888 5999999999998 56 899999998642 22222234678899999999988876 4
Q ss_pred CCCcEEEEEeC
Q 003861 604 TSPKAVMIMYT 614 (791)
Q Consensus 604 ~~a~~viv~~~ 614 (791)
+++|+||-+.+
T Consensus 74 ~~~d~vih~A~ 84 (348)
T 1oc2_A 74 AKADAIVHYAA 84 (348)
T ss_dssp TTCSEEEECCS
T ss_pred hcCCEEEECCc
Confidence 56688877754
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.14 Score=55.77 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++.|+|+|++|+.+++.|. ..|.+ |++.|.+++..+...+.|... .+ +-++.+ +++|.|+
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~----------~~G~~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~aDvV~ 226 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLV----------PFNPKELLYYDYQALPKDAEEKVGARR--VE-NIEELV-----AQADIVT 226 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHG----------GGCCSEEEEECSSCCCHHHHHHTTEEE--CS-SHHHHH-----HTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCcEEEEECCCccchhHHHhcCcEe--cC-CHHHHH-----hcCCEEE
Confidence 46999999999999999998 88997 999998876655555555321 11 222333 3677777
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++.+..
T Consensus 227 l~~P~t 232 (364)
T 2j6i_A 227 VNAPLH 232 (364)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 777654
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.12 Score=55.64 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+++.|+ ..|.+|++.|.+++..+...+.|... . +-++.+ +++|.|++
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~~~~~~g~~~--~--~l~ell-----~~aDvV~l 206 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQ----------GWGATLQYHEAKALDTQTEQRLGLRQ--V--ACSELF-----ASSDFILL 206 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTT----------TSCCEEEEECSSCCCHHHHHHHTEEE--C--CHHHHH-----HHCSEEEE
T ss_pred CEEEEEeeCHHHHHHHHHHH----------HCCCEEEEECCCCCcHhHHHhcCcee--C--CHHHHH-----hhCCEEEE
Confidence 46999999999999999998 89999999999885555555555421 1 223344 35787888
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+.+..
T Consensus 207 ~~P~t 211 (330)
T 4e5n_A 207 ALPLN 211 (330)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 77753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.17 Score=51.13 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=55.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .+...+.+|.+|++.++++
T Consensus 4 k~vlVTGas~GIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLV----------ERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVE 73 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 45778886 679999999998 899999999999998776543 2577889999999876643
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 74 ~~g~id~lvnnAg 86 (235)
T 3l6e_A 74 WGGLPELVLHCAG 86 (235)
T ss_dssp HHCSCSEEEEECC
T ss_pred hcCCCcEEEECCC
Confidence 1135677766543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.19 Score=53.29 Aligned_cols=108 Identities=14% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++.|+|+|++|+..++.|.+ ..+.+++ +.|.|+++.+.+.+. .. .+. +-++.+++ .++|+|+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~---------~~~~~~v~v~d~~~~~~~~~~~~-~~-~~~--~~~~~l~~---~~~D~V~ 74 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAG---------LPGAALVRLASSNPDNLALVPPG-CV-IES--DWRSVVSA---PEVEAVI 74 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHH---------CTTEEEEEEEESCHHHHTTCCTT-CE-EES--STHHHHTC---TTCCEEE
T ss_pred ceEEEECCcHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHhh-Cc-ccC--CHHHHhhC---CCCCEEE
Confidence 479999999999999999972 3466654 889999988766554 22 232 23445532 4789999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHH----HHHCCCCeEEc
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLD----LKKAGATDAIL 658 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~----L~~~Gad~Vi~ 658 (791)
++++++. ....+..+-+.+ .+|++. +.+.+..+. .++.|....+.
T Consensus 75 i~tp~~~-h~~~~~~al~~G--k~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 126 (315)
T 3c1a_A 75 IATPPAT-HAEITLAAIASG--KAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVE 126 (315)
T ss_dssp EESCGGG-HHHHHHHHHHTT--CEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEE
T ss_pred EeCChHH-HHHHHHHHHHCC--CcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 9998754 344444444443 466664 334444333 35567776553
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=91.94 E-value=0.16 Score=52.91 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c---CCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~---~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+ . ...++.+|.+|++.++++=
T Consensus 29 k~vlITGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLA----------KMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 46888887 789999999998 789999999999987665432 2 3567889999988766531
Q ss_pred -----CCCCcEEEEE
Q 003861 603 -----ITSPKAVMIM 612 (791)
Q Consensus 603 -----i~~a~~viv~ 612 (791)
..+.|.+|-.
T Consensus 99 ~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 99 QAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHTSCSEEEEC
T ss_pred HHHHHcCCCCEEEEC
Confidence 1367877644
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.19 Score=50.56 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcCC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGI-- 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~agi-- 603 (791)
+.++|.|. |.+|+.+++.|. +.| ++|++++.+++..+.+.+. ...++.+|.+|++.++++--
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (250)
T 1yo6_A 4 GSVVVTGANRGIGLGLVQQLV----------KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHH----------TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHH----------hcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHH
Confidence 35777775 788999999998 789 9999999999887766543 46788999999987765411
Q ss_pred ------CCCcEEEEEe
Q 003861 604 ------TSPKAVMIMY 613 (791)
Q Consensus 604 ------~~a~~viv~~ 613 (791)
.+.|.+|-+.
T Consensus 74 ~~~~g~~~id~li~~A 89 (250)
T 1yo6_A 74 GEIVGSDGLSLLINNA 89 (250)
T ss_dssp HHHHGGGCCCEEEECC
T ss_pred HHhcCCCCCcEEEECC
Confidence 1678777654
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.31 Score=50.83 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc--CCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA--GITS 605 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a--gi~~ 605 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+.+.+. ...++.+|.+|++.++++ .+.+
T Consensus 17 k~vlVTGas~gIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 17 RTVVITGANSGLGAVTARELA----------RRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CEEEEECCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 35677776 779999999998 8899999999999988777543 467889999999988764 4457
Q ss_pred CcEEEEEeC
Q 003861 606 PKAVMIMYT 614 (791)
Q Consensus 606 a~~viv~~~ 614 (791)
.|.+|-..+
T Consensus 87 iD~lv~nAg 95 (291)
T 3rd5_A 87 ADVLINNAG 95 (291)
T ss_dssp EEEEEECCC
T ss_pred CCEEEECCc
Confidence 787776543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.54 Score=50.33 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=68.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCC-CEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGF-PILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~-~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+|.+|+..++.|.+ ...+.+++ +.|.|+++.+.+.+ .+. ...+.| -++.+++ .++|+|
T Consensus 4 rigiIG~G~~g~~~~~~l~~--------~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~--~~~ll~~---~~~D~V 70 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITN--------KLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPN--DDSLLAD---ENVDAV 70 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------TCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESS--HHHHHHC---TTCCEE
T ss_pred EEEEECccHHHHHHHHHHHh--------hCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCC--HHHHhcC---CCCCEE
Confidence 68999999999999998861 03567766 67999999887754 453 233332 2344443 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCe
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATD 655 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~ 655 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|...
T Consensus 71 ~i~tp~~~h-~~~~~~al~~G--k~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 71 LVTSWGPAH-ESSVLKAIKAQ--KYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred EECCCchhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 999987543 44455555554 467763 3455554444 4456654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.88 E-value=0.22 Score=52.82 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=55.9
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHH---hcCCCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESR---KLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~---~~~~~~v~GD~t~~~~L~~ag 602 (791)
.++++|.|. |-+|+.+++.|. +.|++|++++.+++..+ .+. ..+..++.+|.+|++.++++=
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELL----------AHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CcEEEEecCCcHHHHHHHHHHH----------HCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 447889985 999999999998 78999999998765432 222 246888999999999887752
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
-.++|.+|-+..
T Consensus 75 ~~~~~d~vih~A~ 87 (341)
T 3enk_A 75 DAHPITAAIHFAA 87 (341)
T ss_dssp HHSCCCEEEECCC
T ss_pred hccCCcEEEECcc
Confidence 136787776553
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.085 Score=56.05 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH------HHHH-hcCCCEEEccCCCHHHHHhcC
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV------KESR-KLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v------~~~~-~~~~~~v~GD~t~~~~L~~ag 602 (791)
.++++|.| .|-+|+.+++.|. ++|++|++++.+++.. +.+. ..+..++.||.+|++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLL----------QKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAP- 77 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHH-
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHH-
Confidence 45789999 6999999999998 7899999877766532 1222 23567889999998877664
Q ss_pred CCCCcEEEEE
Q 003861 603 ITSPKAVMIM 612 (791)
Q Consensus 603 i~~a~~viv~ 612 (791)
++++|+||-+
T Consensus 78 ~~~~D~Vih~ 87 (338)
T 2rh8_A 78 IAGCDFVFHV 87 (338)
T ss_dssp HTTCSEEEEE
T ss_pred HcCCCEEEEe
Confidence 3467877754
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.07 Score=58.55 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL 588 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v 588 (791)
..+++|+|.|++|+.+++.++ ..|.+|++.|.++++.+.+++.|..++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~----------~~Ga~V~~~d~~~~~~~~~~~~Ga~~~ 219 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAK----------RLGAVVMATDVRAATKEQVESLGGKFI 219 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 558999999999999999998 789999999999998888877776544
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.18 Score=56.53 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=61.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH--------HHHhcCCC----------EEEccCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK--------ESRKLGFP----------ILYGDAS 593 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~--------~~~~~~~~----------~v~GD~t 593 (791)
++|.|+|.|.+|..+|..|. +.|++|++.|.|+++.. ++.+.|.- -+.. .+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la----------~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~ 123 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFG----------LAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TS 123 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ES
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eC
Confidence 57999999999999999998 78999999999998432 23233320 0111 11
Q ss_pred CHHHHHhcCCCCCcEEEEEeCCHHHHH-HHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 594 RPAVLLSAGITSPKAVMIMYTDKKRTI-EAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 594 ~~~~L~~agi~~a~~viv~~~~d~~n~-~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
| ++ .+++||.||.++.++..-. .+...+.+.-+.-.|++...+.-....+
T Consensus 124 d---l~--al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~i 174 (460)
T 3k6j_A 124 D---FH--KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEI 174 (460)
T ss_dssp C---GG--GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHH
T ss_pred C---HH--HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHH
Confidence 2 22 3789999999998764322 2222333332222466644443333444
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.78 Score=48.56 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=81.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHH----Hhc------CCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKES----RKL------GFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~----~~~------~~~~v~GD~t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. ..|. +++++|.|+++++.. .+. ...+... +|.+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la----------~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~---- 66 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLA----------AKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYA---- 66 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CCHH----
Confidence 47999999999999999997 5665 899999999776432 110 1222220 2222
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CC--CCeEEcC-
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AG--ATDAILE- 659 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~G--ad~Vi~p- 659 (791)
.+++||.||++.+. | ..|.. ++..+++..|+..++. +.|+.+. ..+++ .| .++|+--
T Consensus 67 -a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~-~tNPv~~~t~~~~~~~~~~~~rviG~g 144 (309)
T 1ur5_A 67 -DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM-VNNPLDAMTYLAAEVSGFPKERVIGQA 144 (309)
T ss_dssp -GGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred -HHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-cCCchHHHHHHHHHHcCCCHHHEEECC
Confidence 26789999988632 2 34543 3445555677765555 4555443 23333 23 3367666
Q ss_pred cHHHHHHHHHHHHhhcCCChHHHH
Q 003861 660 NAETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 660 ~~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
..+-..++-..+-+.+|+++..++
T Consensus 145 t~LD~~r~~~~la~~lgv~~~~v~ 168 (309)
T 1ur5_A 145 GVLDAARYRTFIAMEAGVSVEDVQ 168 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred cchHHHHHHHHHHHHhCCChhhee
Confidence 443355666666667777775443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.82 E-value=0.54 Score=45.76 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH---h-cCCCC
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL---S-AGITS 605 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~---~-agi~~ 605 (791)
.++++|.| .|.+|+.+++.+. ..|.+|+++|.++++.+.+++.|...+ .|.++++..+ + .+-..
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~----------~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAK----------MIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred CCEEEEeeCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCC
Confidence 45799999 6999999999998 789999999999999888887776544 3666544322 2 23246
Q ss_pred CcEEEEEeCC
Q 003861 606 PKAVMIMYTD 615 (791)
Q Consensus 606 a~~viv~~~~ 615 (791)
.|.++-+.+.
T Consensus 108 ~D~vi~~~g~ 117 (198)
T 1pqw_A 108 VDVVLNSLAG 117 (198)
T ss_dssp EEEEEECCCT
T ss_pred CeEEEECCch
Confidence 8988877764
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.17 Score=57.18 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhcC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLG 584 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~~ 584 (791)
.++.|+|.|.+|..++..|. +. |++|+++|.|+++++.+.+.+
T Consensus 10 mkI~VIG~G~vG~~~A~~La----------~~g~g~~V~~~D~~~~~v~~l~~g~ 54 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIA----------HKCPHITVTVVDMNTAKIAEWNSDK 54 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HHCTTSEEEEECSCHHHHHHHTSSS
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEECCHHHHHHHHCCC
Confidence 37999999999999999998 55 799999999999999987643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=1.1 Score=47.84 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH-HHh--cC----CC-EEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE-SRK--LG----FP-ILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~-~~~--~~----~~-~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++-.|. ..+ .+++++|.|+++++. +.+ +. .+ -+.+| +.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~----------~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~--~~~---- 72 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMV----------LQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA--EYS---- 72 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEEC--CGG----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------cCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEEC--CHH----
Confidence 457999999999999999886 333 389999999987654 222 11 11 13332 222
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-CCC--CeEEcC-
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILE- 659 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L~~-~Ga--d~Vi~p- 659 (791)
.+++||.||++.+-. ..|.. ++..+++.+|+..++. ..||.+.- .+++ .|. .+|+--
T Consensus 73 -a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~g 150 (326)
T 2zqz_A 73 -DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV-AANPVDILTYATWKLSGFPKNRVVGSG 150 (326)
T ss_dssp -GGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred -HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCcHHHHHHHHHHHcCCCHHHEEEcc
Confidence 267899998887532 13443 3455666789987776 56665542 3333 344 367644
Q ss_pred cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 ~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..++-..+-+.+|+++..+
T Consensus 151 t~LD~~R~~~~la~~lgv~~~~v 173 (326)
T 2zqz_A 151 TSLDTARFRQSIAEMVNVDARSV 173 (326)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGE
T ss_pred ccchHHHHHHHHHHHhCCChhhe
Confidence 43434566666666677776443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.21 Score=50.82 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----Hhc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+.. ++. ...++.+|.+|++.++++=
T Consensus 14 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 83 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALA----------EAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRS 83 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 45777765 789999999998 7899999999998765443 222 3667899999998876541
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 84 ~~~~~~~id~vi~~A 98 (260)
T 3awd_A 84 VHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 23678777654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.18 Score=50.97 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++=
T Consensus 3 k~vlItGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFL----------ARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIA 72 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35777776 788999999998 789999999999887665432 23567899999998877641
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 73 ~~~~~~~~id~li~~A 88 (250)
T 2cfc_A 73 ATMEQFGAIDVLVNNA 88 (250)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 13678777654
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.086 Score=57.05 Aligned_cols=76 Identities=22% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCC-CHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS-RPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t-~~~~L~~agi~~a~~vi 610 (791)
+.++|+|.|..|..++...+ +.|++++++|.|++... .+.-..++..|.+ |.+.+.+ -.+++|+++
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak----------~~G~~vv~vd~~~~~~~--~~~aD~~~~~~~~~d~~~~~~-~~~~~D~v~ 68 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSK----------KAGMKVVLVDKNPQALI--RNYADEFYCFDVIKEPEKLLE-LSKRVDAVL 68 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCTTCTT--TTTSSEEEECCTTTCHHHHHH-HHTSSSEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCChh--HhhCCEEEECCCCcCHHHHHH-HhcCCCEEE
Confidence 36899999999999999998 89999999999987532 1122235555654 4444433 235789887
Q ss_pred EEeCCHHHHH
Q 003861 611 IMYTDKKRTI 620 (791)
Q Consensus 611 v~~~~d~~n~ 620 (791)
...++...+.
T Consensus 69 ~~~~~~~~~~ 78 (363)
T 4ffl_A 69 PVNENLACIE 78 (363)
T ss_dssp ECCCCHHHHH
T ss_pred ECCCChhHHH
Confidence 7776654433
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.58 Score=47.92 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=64.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++|+|+ |++|+.+++.+.+ ..+.+++ ++|.+ .|.+.+.. .++|++|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~---------~~~~elva~~d~~-------------------~dl~~~~~---~~~DvvI 50 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAA---------ADDLTLSAELDAG-------------------DPLSLLTD---GNTEVVI 50 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------CTTCEEEEEECTT-------------------CCTHHHHH---TTCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEccC-------------------CCHHHHhc---cCCcEEE
Confidence 4899996 9999999999862 4578876 55643 12222222 3678665
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHC-----CCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKA-----GATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara--~~~~~~~~L~~~-----Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
=.++. +.....+..+.+.+ ++++.-. -+++..+.++++ ++-.++.|+.-.|..+..++.+
T Consensus 51 DfT~p-~a~~~~~~~a~~~g--~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 51 DFTHP-DVVMGNLEFLIDNG--IHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp ECSCT-TTHHHHHHHHHHTT--CEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHH
T ss_pred EccCh-HHHHHHHHHHHHcC--CCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHH
Confidence 45533 33344444555554 4544422 345555566554 6777899997666666555543
|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
Probab=91.76 E-value=0.13 Score=60.55 Aligned_cols=119 Identities=19% Similarity=0.073 Sum_probs=80.8
Q ss_pred ccCCCCEEEeCCChh------HHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHh----cCCCEEEccCCCHH
Q 003861 528 YEGSEPVVIVGFGQM------GQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRK----LGFPILYGDASRPA 596 (791)
Q Consensus 528 ~~~~~~viI~G~G~~------G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~----~~~~~v~GD~t~~~ 596 (791)
...++|+|||++|.- =+....-|+ -...+-++=.++|++-. +.-+ ++++. ..+.++.|.+...+
T Consensus 374 ~~~~~HivvC~~~~~~s~~~gl~~fvmpLR----asn~~~~elk~IV~lg~~~~~~-~ew~~l~nfp~iy~~~Gspl~~~ 448 (726)
T 3mt5_A 374 TVLSGHVVVCIFGDVSSALIGLRNLVMPLR----ASNFHYHELKHIVFVGSIEYLK-REWETLHNFPKVSILPGTPLSRA 448 (726)
T ss_dssp SCCCSCEEEEEECCTTSCCCCTHHHHTGGG----BTTSCGGGCCCEEEEECHHHHH-HHHHHHTTSSSEEEEESCTTCHH
T ss_pred hcccCcEEEEEecCCCCcchhhhhheeecc----cccCCHhHcCCEEEECCCccCH-HHHHHHhcCCceEEecCCcCChH
Confidence 468899999999875 233444444 22221122335555543 4433 44553 34668899999999
Q ss_pred HHHhcCCCCCcEEEEEeCC----------HHHHHHHHHHHHHh-------------------------------------
Q 003861 597 VLLSAGITSPKAVMIMYTD----------KKRTIEAVQRLRLA------------------------------------- 629 (791)
Q Consensus 597 ~L~~agi~~a~~viv~~~~----------d~~n~~~~~~ar~l------------------------------------- 629 (791)
-|++|||..|+..|+.... |.++++++++.|.+
T Consensus 449 dL~~~~i~~c~~cvils~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (726)
T 3mt5_A 449 DLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQ 528 (726)
T ss_dssp HHHHTTGGGCSEEEEEECC----------CHHHHHHHHHHHTCEEC----------------------------------
T ss_pred hHHHhCHhhCCEEEEecCCCCCcCCcccchhhhhhhhhcccccccccccccccccccccccccccccccccCccchhhhc
Confidence 9999999999988777542 45667777666664
Q ss_pred -----CCCCcEEEEecChhhHHHHHHC
Q 003861 630 -----FPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 630 -----~p~~~iiara~~~~~~~~L~~~ 651 (791)
+++++++....++.+.+.|.+.
T Consensus 529 ~~~~~~~~i~iitEL~~~sni~fl~~~ 555 (726)
T 3mt5_A 529 PSITTGVNIPIITELVNDTNVQFLDQD 555 (726)
T ss_dssp -CCEEGGGSCEEEEESCGGGGTTSCSS
T ss_pred ccccccCCCceEEEecCCccceeeeec
Confidence 3456888988999998888764
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=91.75 E-value=0.18 Score=53.93 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=49.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++.|+|+|++|+.+++.|. ..|.+|++.|. +++. +.+.+.|... .+ +-++.+ +++|.|+
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~~-~~~~~~g~~~--~~-~l~ell-----~~aDvVi 207 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQ----------GFDMDIDYFDTHRASS-SDEASYQATF--HD-SLDSLL-----SVSQFFS 207 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSCCCH-HHHHHHTCEE--CS-SHHHHH-----HHCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcCh-hhhhhcCcEE--cC-CHHHHH-----hhCCEEE
Confidence 46999999999999999998 88999999999 8876 3444556532 11 223344 3678888
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++.+..+
T Consensus 208 l~~p~~~ 214 (320)
T 1gdh_A 208 LNAPSTP 214 (320)
T ss_dssp ECCCCCT
T ss_pred EeccCch
Confidence 8887643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.17 Score=52.44 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc--
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a-- 601 (791)
+++.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+. ....+.+|.+|++.++++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~La----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 89 (272)
T 2nwq_A 20 MSSTLFITGATSGFGEACARRFA----------EAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVD 89 (272)
T ss_dssp -CCEEEESSTTTSSHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred cCcEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 3456888876 689999999998 8899999999999887665432 466789999999887764
Q ss_pred CC----CCCcEEEEEe
Q 003861 602 GI----TSPKAVMIMY 613 (791)
Q Consensus 602 gi----~~a~~viv~~ 613 (791)
.+ .+.|.+|-..
T Consensus 90 ~~~~~~g~iD~lvnnA 105 (272)
T 2nwq_A 90 NLPEEFATLRGLINNA 105 (272)
T ss_dssp TCCGGGSSCCEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 22 3468776654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=1.1 Score=47.14 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=78.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHhc----CCC-EEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRKL----GFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~~----~~~-~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|..++..|. ..|. +++++|.++++++ ++.+. ..+ -+.+. +|.+
T Consensus 2 kI~ViGaG~vG~~la~~l~----------~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d~~----- 65 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCL----------LNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG-ADYS----- 65 (294)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE-SCGG-----
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe-CCHH-----
Confidence 4789999999999999997 5666 8999999999865 12221 111 23321 2233
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHCC--CCeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAG--ATDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~~--~L-~~~G--ad~Vi~p-~ 660 (791)
.+++||.+|++.+. | ..|..+ +..+++.+|+..++... ||-+.- .+ +..| .++|+-- .
T Consensus 66 a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs-NPvd~~t~~~~k~~g~p~~rviG~gt 144 (294)
T 1oju_A 66 LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT-NPMDVMTYIMWKESGKPRNEVFGMGN 144 (294)
T ss_dssp GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS-SSHHHHHHHHHHHSCCCTTSEEECSH
T ss_pred HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC-CcchHHHHHHHHhcCCCHHHEeeccc
Confidence 35789998888643 1 345443 44566678886655544 554432 23 3334 4566665 2
Q ss_pred HHHHHHHHHHHHhhcCCChH
Q 003861 661 AETSLQLGSKLLKGFGVMSD 680 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~ 680 (791)
.+-..|+-..+- .+++++.
T Consensus 145 ~LD~~R~~~~la-~l~v~~~ 163 (294)
T 1oju_A 145 QLDSQRLKERLY-NAGARNI 163 (294)
T ss_dssp HHHHHHHHHHHH-HTTCBSC
T ss_pred ccHHHHHHHHHH-HhCCCcc
Confidence 333344444444 6666663
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.13 Score=55.24 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-------CcEEEEcCChh-----hHHHHHhcCCCE-----------E
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-------WPFVAFDLNPS-----VVKESRKLGFPI-----------L 588 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-------~~vvvID~d~~-----~v~~~~~~~~~~-----------v 588 (791)
.++.|+|.|.+|..++..|. +.| ++|+++|.+++ ..+.+++.+... +
T Consensus 9 mkI~iIG~G~mG~~~a~~l~----------~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVG----------GNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNV 78 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHH----------HHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTE
T ss_pred CeEEEECCCHHHHHHHHHHH----------hcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCe
Confidence 36999999999999999998 677 89999999998 777776532110 1
Q ss_pred EccCCCHHHHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRPAVLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~~~L~~agi~~a~~viv~~~~d 616 (791)
... +|.+ + -++++|.|++++.+.
T Consensus 79 ~~~-~~~~---~-~~~~aD~Vilav~~~ 101 (354)
T 1x0v_A 79 VAV-PDVV---Q-AAEDADILIFVVPHQ 101 (354)
T ss_dssp EEE-SSHH---H-HHTTCSEEEECCCGG
T ss_pred EEE-cCHH---H-HHcCCCEEEEeCCHH
Confidence 110 2221 1 135799999999864
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.36 Score=51.59 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.+++..+. ....+.-.+-++.+ +++|.|+
T Consensus 137 gktvGIiGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~~-----~~~~~~~~~l~ell-----~~aDvV~ 196 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKAS----------ALGMHVIGVNTTGHPADH-----FHETVAFTATADAL-----ATANFIV 196 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSCCCCTT-----CSEEEEGGGCHHHH-----HHCSEEE
T ss_pred CCeEEEECcCHHHHHHHHHHH----------hCCCEEEEECCCcchhHh-----HhhccccCCHHHHH-----hhCCEEE
Confidence 346999999999999999998 889999999998765331 22222212223344 4578888
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++.+..
T Consensus 197 l~lPlt 202 (324)
T 3evt_A 197 NALPLT 202 (324)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 877653
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.2 Score=50.79 Aligned_cols=72 Identities=8% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CC-CEEEccCCCHHHHHhcC----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GF-PILYGDASRPAVLLSAG---- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~-~~v~GD~t~~~~L~~ag---- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+. .. ..+.+|.+|++.++++-
T Consensus 12 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFA----------ASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHH
Confidence 35777765 789999999998 7899999999999877655432 23 67899999999887641
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 82 ~~~~id~li~~A 93 (254)
T 2wsb_A 82 AVAPVSILVNSA 93 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred hhCCCcEEEECC
Confidence 24678777654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.13 Score=55.58 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.++...+... +... . .+.+.+ ++++|.|++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~~~~--g~~~--~--~~l~el----l~~sDvV~l 233 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRAR----------GFGLAIHYHNRTRLSHALEE--GAIY--H--DTLDSL----LGASDIFLI 233 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHH----------TTTCEEEEECSSCCCHHHHT--TCEE--C--SSHHHH----HHTCSEEEE
T ss_pred CEEEEEEeChhHHHHHHHHH----------HCCCEEEEECCCCcchhhhc--CCeE--e--CCHHHH----HhhCCEEEE
Confidence 46999999999999999998 89999999999875443322 3322 1 222222 256888888
Q ss_pred EeCCHHHH--HHHHHHHHHhCCC
Q 003861 612 MYTDKKRT--IEAVQRLRLAFPA 632 (791)
Q Consensus 612 ~~~~d~~n--~~~~~~ar~l~p~ 632 (791)
+++..+++ +.-....+.+.|+
T Consensus 234 ~~Plt~~T~~li~~~~l~~mk~g 256 (345)
T 4g2n_A 234 AAPGRPELKGFLDHDRIAKIPEG 256 (345)
T ss_dssp CSCCCGGGTTCBCHHHHHHSCTT
T ss_pred ecCCCHHHHHHhCHHHHhhCCCC
Confidence 88764332 2223344455554
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.28 Score=53.02 Aligned_cols=106 Identities=21% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|.|+|++|+.+++.|. +.|.+|++.|.|+++.+..++.+...+ +..+.|. .++|.++
T Consensus 175 GktV~I~G~GnVG~~~A~~l~----------~~GakVvvsD~~~~~~~~a~~~ga~~v----~~~ell~----~~~DIli 236 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAA----------EAGAQLLVADTDTERVAHAVALGHTAV----ALEDVLS----TPCDVFA 236 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CGGGGGG----CCCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHH----------HCCCEEEEEeCCccHHHHHHhcCCEEe----ChHHhhc----Cccceec
Confidence 457999999999999999998 889999999999886333334443332 1234443 3788765
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHCCCCeEEcCcH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~-----~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
-+......|. ..++.+. .++++..- +++..+.|++-|+ ++.|..
T Consensus 237 P~A~~~~I~~---~~~~~lk--~~iVie~AN~p~t~~eA~~~L~~~gI--lv~Pd~ 285 (355)
T 1c1d_A 237 PCAMGGVITT---EVARTLD--CSVVAGAANNVIADEAASDILHARGI--LYAPDF 285 (355)
T ss_dssp ECSCSCCBCH---HHHHHCC--CSEECCSCTTCBCSHHHHHHHHHTTC--EECCHH
T ss_pred HhHHHhhcCH---HHHhhCC--CCEEEECCCCCCCCHHHHHHHHhCCE--EEECCe
Confidence 4433222222 2334443 46666433 2355777888775 566764
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.17 Score=52.71 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=65.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CC--CEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF--PILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~--~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|+|.|.+|+.++..|. +.|.+|++.+.++++.+++.+. +. .+...| .+.+. . .++|
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~----------~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~---~~~~~--~-~~~D 182 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLL----------QAQQNIVLANRTFSKTKELAERFQPYGNIQAVS---MDSIP--L-QTYD 182 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEE---GGGCC--C-SCCS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHccccCCeEEee---HHHhc--c-CCCC
Confidence 357999999999999999998 7889999999999988776532 11 221222 11111 1 4899
Q ss_pred EEEEEeCCHHH-HHH-HHHHHHHhCCCCcEEEEecChhh----HHHHHHCCCCeEEcC
Q 003861 608 AVMIMYTDKKR-TIE-AVQRLRLAFPAIPIYARAQDMMH----LLDLKKAGATDAILE 659 (791)
Q Consensus 608 ~viv~~~~d~~-n~~-~~~~ar~l~p~~~iiara~~~~~----~~~L~~~Gad~Vi~p 659 (791)
.+|.+++.... +.. +-. ....++..++=-..++.. .+..++.|+..++.-
T Consensus 183 ivIn~t~~~~~~~~~~i~~--~~l~~~~~v~D~~y~p~~~t~ll~~a~~~G~~~~v~G 238 (272)
T 1p77_A 183 LVINATSAGLSGGTASVDA--EILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDG 238 (272)
T ss_dssp EEEECCCC-------CCCH--HHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECS
T ss_pred EEEECCCCCCCCCCCCCCH--HHcCCCCEEEEeeCCCCcCCHHHHHHHHcCCCEeeCC
Confidence 99888886532 110 000 011122233333333333 455677898745554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=91.63 E-value=0.11 Score=56.11 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++.|+|+|++|+.+++.+.+ ..|.+|++.|.+++..+...+.|.... + +-++.+ +++|.|++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~---------~~G~~V~~~d~~~~~~~~~~~~g~~~~--~-~l~ell-----~~aDvVil 226 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVH---------GLGMKLVYYDVAPADAETEKALGAERV--D-SLEELA-----RRSDCVSV 226 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHH---------TTCCEEEEECSSCCCHHHHHHHTCEEC--S-SHHHHH-----HHCSEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHH---------hcCCEEEEECCCCcchhhHhhcCcEEe--C-CHHHHh-----ccCCEEEE
Confidence 469999999999999999951 478999999999877666555554432 1 222334 36788888
Q ss_pred EeCCHH
Q 003861 612 MYTDKK 617 (791)
Q Consensus 612 ~~~~d~ 617 (791)
+++.+.
T Consensus 227 ~vp~~~ 232 (348)
T 2w2k_A 227 SVPYMK 232 (348)
T ss_dssp CCCCSG
T ss_pred eCCCCh
Confidence 887643
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.11 Score=55.92 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|++|+.+++.|. ..|.+|++.|.+++. +...+.|... . +-++.+ +++|.|++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~---~-~l~e~l-----~~aDiVil 206 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLI----------PFGVKLYYWSRHRKV-NVEKELKARY---M-DIDELL-----EKSDIVIL 206 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCH-HHHHHHTEEE---C-CHHHHH-----HHCSEEEE
T ss_pred CEEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCcch-hhhhhcCcee---c-CHHHHH-----hhCCEEEE
Confidence 46999999999999999998 889999999999886 4444445321 1 222333 46888888
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+++.+
T Consensus 207 ~vp~~ 211 (333)
T 2d0i_A 207 ALPLT 211 (333)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88775
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.32 Score=50.22 Aligned_cols=72 Identities=18% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---hHHHHHh--cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---~v~~~~~--~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++ ..+++.+ ....++.+|.+|++.++++
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 76 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCF----------NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYN 76 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHH
Confidence 46888897 599999999998 88999999999876 4454443 2367899999999877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~~g~id~lv~nA 92 (275)
T 2pd4_A 77 SVKKDLGSLDFIVHSV 92 (275)
T ss_dssp HHHHHTSCEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123667776654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.25 Score=50.98 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCCCE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHh
Q 003861 530 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ 600 (791)
+++++ +|-|. +-+|+.+|+.|. ++|.+|++.|.|++..++.. +.| ...+.+|.+|++..++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la----------~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFA----------LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEE 73 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 45554 44455 569999999998 89999999999998865543 334 3456788888887664
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.29 Score=49.56 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcE-EEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~v-vvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.|+|+|++|+.+++.|. +.|.++ .+.|.+++ .+ + . .+|.+.+-+ .++|+|++
T Consensus 2 ~vgiIG~G~mG~~~~~~l~----------~~g~~lv~v~d~~~~-~~---~-----~---~~~~~~l~~---~~~DvVv~ 56 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLE----------RNGFEIAAILDVRGE-HE---K-----M---VRGIDEFLQ---REMDVAVE 56 (236)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEEECSSCC-CT---T-----E---ESSHHHHTT---SCCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHh----------cCCCEEEEEEecCcc-hh---h-----h---cCCHHHHhc---CCCCEEEE
Confidence 4789999999999999997 678887 57888752 21 1 2 234443322 68999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEec----C----hhhHHHHHHCCCCeEEcCcHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQ----D----MMHLLDLKKAGATDAILENAETS 664 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~----~----~~~~~~L~~~Gad~Vi~p~~~~~ 664 (791)
+++++ .....+..+.+. +.+++.... + .+-.+..++.|....+.+....+
T Consensus 57 ~~~~~-~~~~~~~~~l~~--G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~ 114 (236)
T 2dc1_A 57 AASQQ-AVKDYAEKILKA--GIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGG 114 (236)
T ss_dssp CSCHH-HHHHHHHHHHHT--TCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSC
T ss_pred CCCHH-HHHHHHHHHHHC--CCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccC
Confidence 99875 334444444443 345665422 1 12223345567775566654433
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.26 Score=50.56 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=54.0
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh---hhHHHHHhc--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~---~~v~~~~~~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.++ +..+++.+. ...++.+|.+|++.++++
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFA 79 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHH
Confidence 46888887 589999999998 8899999999987 445555432 357889999999877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 80 ~~~~~~g~iD~lv~~A 95 (265)
T 1qsg_A 80 ELGKVWPKFDGFVHSI 95 (265)
T ss_dssp HHHTTCSSEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 223678776654
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A | Back alignment and structure |
|---|
Probab=91.54 E-value=0.55 Score=42.69 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcC-CCEEEccCCCHHHHHhcCC--CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCC
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLG-FPILYGDASRPAVLLSAGI--TSPKAVMIMYTD-KKRTIEAVQRLRLAFPAI 633 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~-~~~v~GD~t~~~~L~~agi--~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~ 633 (791)
..+..|+++|.|+...+.+ ++.| +.+... .+..+.+....- ...|.+++-..- +.....++..+|+.+|++
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~-~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRT-VGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEE-CCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEe-CCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 4456677777777654433 3455 555543 233334444322 678888777653 355677888999999999
Q ss_pred cEEEEecC--hhhHHHHHHCCCCeEEcCc
Q 003861 634 PIYARAQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 634 ~iiara~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
++|+-... .+......++||+..+.-.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp 125 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWP 125 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESS
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCC
Confidence 97776654 4555667789999876544
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.23 Score=50.73 Aligned_cols=72 Identities=14% Similarity=-0.007 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+. ....+.+|.+|++.++++=
T Consensus 6 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAV----------AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 35777776 789999999998 8899999999999887765432 3567889999998776541
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 76 ~~g~iD~lv~nA 87 (254)
T 1hdc_A 76 EFGSVDGLVNNA 87 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 23678777654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.22 Score=50.27 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+ ....++.+|.+|++.++++=
T Consensus 8 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLA----------SAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFE 77 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHH
Confidence 35777765 789999999998 789999999999887655432 23567889999998877641
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 78 ~~~~~~~~~d~vi~~Ag 94 (248)
T 2pnf_A 78 EIYNLVDGIDILVNNAG 94 (248)
T ss_dssp HHHHHSSCCSEEEECCC
T ss_pred HHHHhcCCCCEEEECCC
Confidence 236787776553
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.12 Score=52.93 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=55.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc--CCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a--gi~~a~~v 609 (791)
.++|-|. +-+|+.+++.|. ++|.+|++.|.|++..+...+.....+.+|.+|++..+++ .+.+-|.+
T Consensus 13 ~alVTGas~GIG~aia~~la----------~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL 82 (242)
T 4b79_A 13 QVLVTGGSSGIGAAIAMQFA----------ELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVL 82 (242)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 4555565 579999999998 8999999999999987766666777889999999877664 45567766
Q ss_pred EEE
Q 003861 610 MIM 612 (791)
Q Consensus 610 iv~ 612 (791)
|-.
T Consensus 83 VNN 85 (242)
T 4b79_A 83 VNN 85 (242)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.18 Score=51.40 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc--C---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA--G--- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a--g--- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+. ....+.+|.+|++.++++ .
T Consensus 7 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLL----------GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35777776 789999999998 7899999999999887665432 456788999999876643 1
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 77 ~~g~id~lv~~A 88 (253)
T 1hxh_A 77 RLGTLNVLVNNA 88 (253)
T ss_dssp HHCSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 23567776554
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.13 Score=56.48 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=49.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++.|+|+|++|+.+++.|+ ..|.+|++.|.+++..+...+.|.... .+.+.+ ++++|.|++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~----------a~G~~V~~~d~~~~~~~~~~~~G~~~~----~~l~el----l~~aDvV~l 253 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLA----------PFDVHLHYTDRHRLPESVEKELNLTWH----ATREDM----YPVCDVVTL 253 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCCHHHHHHHTCEEC----SSHHHH----GGGCSEEEE
T ss_pred CEEEEEeECHHHHHHHHHHH----------hCCCEEEEEcCCccchhhHhhcCceec----CCHHHH----HhcCCEEEE
Confidence 46999999999999999998 889999999998766555555554421 222222 247888888
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+.+..
T Consensus 254 ~~Plt 258 (393)
T 2nac_A 254 NCPLH 258 (393)
T ss_dssp CSCCC
T ss_pred ecCCc
Confidence 88754
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.24 Score=50.77 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++.++++
T Consensus 9 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 78 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYV----------REGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVE 78 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 45777776 789999999998 899999999999998776543 2456788999999876653
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 79 ~~g~id~lv~~Ag 91 (259)
T 4e6p_A 79 HAGGLDILVNNAA 91 (259)
T ss_dssp HSSSCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 1236787776543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.13 Score=55.70 Aligned_cols=72 Identities=21% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhH-HHHH-hcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVV-KESR-KLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v-~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.+++|.|. |-+|+.+++.|. +.| ++|++++.+++.. +.+. ..+..++.+|.+|++.++++ ++++|
T Consensus 33 ~~ilVtGatG~iG~~l~~~L~----------~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~-~~~~d 101 (377)
T 2q1s_A 33 TNVMVVGGAGFVGSNLVKRLL----------ELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASL-QDEYD 101 (377)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHC-CSCCS
T ss_pred CEEEEECCccHHHHHHHHHHH----------HcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHH-hhCCC
Confidence 35888886 999999999998 789 9999999876542 1121 34577889999999999876 45899
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
+||-+..
T Consensus 102 ~Vih~A~ 108 (377)
T 2q1s_A 102 YVFHLAT 108 (377)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8887654
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.72 Score=41.40 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=64.1
Q ss_pred CCCCcEEEEcCChhhHHHH----Hh-cCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHH--hCCCC
Q 003861 562 TVGWPFVAFDLNPSVVKES----RK-LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRL--AFPAI 633 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~--l~p~~ 633 (791)
.....+.++|.|+...+.+ ++ .|+..+..-.+-.+.++.+.-...|.+++-..- +......+..+|+ .++++
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 85 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANI 85 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTS
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCC
Confidence 4566788999888765443 34 677733322333555665555678988887653 3355677888888 67888
Q ss_pred cEEEEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 634 PIYARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 634 ~iiara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
++++-.... +......+.|++.++.-.
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP 114 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKP 114 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCC
Confidence 888766544 444667889999877543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.44 E-value=0.23 Score=51.30 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhcC------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAG------ 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~ag------ 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+.+.+. +..++.+|.+|++.++++=
T Consensus 10 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFV----------NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 45777775 789999999998 8899999999999887766542 4678899999998776541
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 80 ~g~iD~lv~nA 90 (270)
T 1yde_A 80 FGRLDCVVNNA 90 (270)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 23567776544
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.097 Score=55.32 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC-CCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi-~~a~~vi 610 (791)
+++|.|. |-+|+.+++.|. +.|++|++++.+++........+..++.+|.+|++.++++=- .++|+||
T Consensus 3 ~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vi 72 (330)
T 2c20_A 3 SILICGGAGYIGSHAVKKLV----------DEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVM 72 (330)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------hCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence 5788875 999999999998 789999999976543211111267889999999998876411 2788887
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
-+..
T Consensus 73 h~a~ 76 (330)
T 2c20_A 73 HFAA 76 (330)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 6654
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.32 Score=52.32 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+|+.|. ..|.+|++.|.+++.. .+.. . ..+.+.+ ++++|.|++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~----------~~G~~V~~~dr~~~~~-----~~~~--~--~~sl~el----l~~aDvVil 228 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAE----------AFGMSVRYWNRSTLSG-----VDWI--A--HQSPVDL----ARDSDVLAV 228 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSCCTT-----SCCE--E--CSSHHHH----HHTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCcccc-----cCce--e--cCCHHHH----HhcCCEEEE
Confidence 46899999999999999998 8999999999987651 1221 1 1222222 357898988
Q ss_pred EeCCHHHHHHH--HHHHHHhCCCCcE
Q 003861 612 MYTDKKRTIEA--VQRLRLAFPAIPI 635 (791)
Q Consensus 612 ~~~~d~~n~~~--~~~ar~l~p~~~i 635 (791)
+.+..+.+..+ ....+.+.|+..+
T Consensus 229 ~vP~t~~t~~li~~~~l~~mk~gail 254 (340)
T 4dgs_A 229 CVAASAATQNIVDASLLQALGPEGIV 254 (340)
T ss_dssp CC----------CHHHHHHTTTTCEE
T ss_pred eCCCCHHHHHHhhHHHHhcCCCCCEE
Confidence 88754333322 3445555555433
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=91.41 E-value=1.7 Score=38.91 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=67.6
Q ss_pred CCcEEEEcCChhhHHHH----Hh-cCCCEEEccCCCHHHHHhcCC-CCCcEEEEEeCC--HHHHHHHHHHHHH--hCCCC
Q 003861 564 GWPFVAFDLNPSVVKES----RK-LGFPILYGDASRPAVLLSAGI-TSPKAVMIMYTD--KKRTIEAVQRLRL--AFPAI 633 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~----~~-~~~~~v~GD~t~~~~L~~agi-~~a~~viv~~~~--d~~n~~~~~~ar~--l~p~~ 633 (791)
...++++|.|+...+.+ ++ .|+.+...+ +-.+.++.+.- .+.|.+++-..- +..-..++..+|+ .+|++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~-~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVE-NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEEC-SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEEC-CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 46789999998865443 34 577776432 33556666666 789988776653 4566788889999 88889
Q ss_pred cEEEEecC--hhhHHHHHHCCCCeEEcC
Q 003861 634 PIYARAQD--MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 634 ~iiara~~--~~~~~~L~~~Gad~Vi~p 659 (791)
++++-..+ .+......++|++..+.-
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~K 110 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILK 110 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEES
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 98776654 456667789999987654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.26 Score=50.70 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. +.+|+.+++.|. ++|++|+++|.+++..+++.+ . ....+.+|.+|++.++++
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCA----------EQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35777776 569999999998 899999999999987665432 2 456788999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 82 ~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 82 TMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHTSCCSEEEECC
T ss_pred HHHHcCCCcEEEECC
Confidence 124678777654
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} | Back alignment and structure |
|---|
Probab=91.40 E-value=1.3 Score=40.53 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEE
Q 003861 562 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~ii 636 (791)
..+.+|.+||.|+...+.++ +.|+.+... .+-.+.++.+.-...|.+++-..- +......+..+|+.+|+++++
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF-TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE-SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe-CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 45678999999987755443 467766643 234567777766778988887653 245567888999999999988
Q ss_pred EEecChh--hHHHHHHCC-CCeEEcC
Q 003861 637 ARAQDMM--HLLDLKKAG-ATDAILE 659 (791)
Q Consensus 637 ara~~~~--~~~~L~~~G-ad~Vi~p 659 (791)
+-....+ ......+.| ++..+.-
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~k 109 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLK 109 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEES
T ss_pred EEecCCCHHHHHHHHhccchheeeeC
Confidence 7766544 444555676 8776554
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.31 Score=50.61 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+ .....+.+|.+|++..+++
T Consensus 30 k~vlVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLA----------DEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 34667775 679999999998 889999999999988776643 3577889999999876653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 100 ~~g~iD~lvnnA 111 (277)
T 3gvc_A 100 AFGGVDKLVANA 111 (277)
T ss_dssp HHSSCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 123567776554
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.59 Score=50.46 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCC-CEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGF-PILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~-~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+..++.|.+ ...+.+++ +.|.|+++.+.+.+ .+. ...+.| -++.+++ .+.|+
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~--------~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~--~~~ll~~---~~~D~ 90 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLAN--------TVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYND--YHDLIND---KDVEV 90 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------TCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESS--HHHHHHC---TTCCE
T ss_pred eeEEEECCcHHHHHHHHHHHh--------hCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCC--HHHHhcC---CCCCE
Confidence 479999999999999998861 03567766 68999999887654 453 233332 2334442 46899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCe
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATD 655 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~ 655 (791)
|+++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|...
T Consensus 91 V~i~tp~~~-h~~~~~~al~aG--k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 91 VIITASNEA-HADVAVAALNAN--KYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp EEECSCGGG-HHHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred EEEcCCcHH-HHHHHHHHHHCC--CCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 999998754 344555555554 467774 4455554444 4556644
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.3 Score=50.00 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+. ...++.+|.+|++.++++=
T Consensus 7 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFA----------KEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35777776 679999999998 8999999999999987665432 3567889999998776531
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 77 ~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 77 IDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 136787776554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.11 Score=56.53 Aligned_cols=74 Identities=19% Similarity=0.103 Sum_probs=52.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++++|+|.|..|+.+++.+. ..|.+|+++|.++++.+.+++.+...+..+..+.+.+.+ -+.++|.+|-
T Consensus 168 ~~VlViGaGgvG~~aa~~a~----------~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvVI~ 236 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAV----------GLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIG 236 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHH-HHcCCCEEEE
Confidence 68999999999999999998 789999999999999888876432211111123333322 1247998888
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+++.+
T Consensus 237 ~~~~~ 241 (361)
T 1pjc_A 237 AVLVP 241 (361)
T ss_dssp CCCCT
T ss_pred CCCcC
Confidence 87653
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=91.38 E-value=1 Score=39.10 Aligned_cols=95 Identities=17% Similarity=0.120 Sum_probs=62.7
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++.++|.|+...+.+ ++.|+.++.--.+-.+.++...-.+.|.+++-..-+ ..-...+..+|+.+|++++++-.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCS 82 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEe
Confidence 4688889888764443 346776543223335566555445688887776543 34567788889888988877766
Q ss_pred cC--hhhHHHHHHCCCCeEEcC
Q 003861 640 QD--MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 640 ~~--~~~~~~L~~~Gad~Vi~p 659 (791)
.. .+......+.|++..+.-
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~K 104 (120)
T 1tmy_A 83 AMGQQAMVIEAIKAGAKDFIVK 104 (120)
T ss_dssp CTTCHHHHHHHHHTTCCEEEES
T ss_pred CCCCHHHHHHHHHhCcceeEeC
Confidence 54 444566778999987654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.26 Score=50.10 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ . ....+.+|.+|++.++++=
T Consensus 8 k~~lVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 8 KVALITGASSGIGEATARALA----------AEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 45777775 789999999998 889999999999887665432 2 3567889999998776531
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 78 ~~~~~g~id~lv~nA 92 (247)
T 2jah_A 78 TVEALGGLDILVNNA 92 (247)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 23678776644
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.11 Score=56.16 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=57.9
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHHh-cCCCEEEccCC-CHHHHHhcCCCCCc
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-LGFPILYGDAS-RPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t-~~~~L~~agi~~a~ 607 (791)
.+++|.| .|-+|+.+++.|. +. |++|++++.+++..+.+.+ .++.++.||.+ |++.++++ ++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~----------~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~-~~~~d 93 (372)
T 3slg_A 25 KKVLILGVNGFIGHHLSKRIL----------ETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH-VKKCD 93 (372)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH-HHHCS
T ss_pred CEEEEECCCChHHHHHHHHHH----------hCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH-hccCC
Confidence 4799999 5999999999998 66 9999999999887665543 67899999999 99888764 23788
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
+||-+.
T Consensus 94 ~Vih~A 99 (372)
T 3slg_A 94 VILPLV 99 (372)
T ss_dssp EEEECB
T ss_pred EEEEcC
Confidence 887543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.25 Score=50.81 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++.++++
T Consensus 14 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 83 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLA----------AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYV 83 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHH
Confidence 45677765 788999999998 789999999999987655432 2356778999999877654
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 84 ~~~~~~~g~id~lv~nA 100 (267)
T 1iy8_A 84 TATTERFGRIDGFFNNA 100 (267)
T ss_dssp HHHHHHHSCCSEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 123567776554
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.3 Score=50.65 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+ . ....+.+|.+|++.++++=
T Consensus 33 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 102 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYA----------EAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQ 102 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35677776 679999999998 889999999999887655432 2 4678899999998776541
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 103 ~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 103 MTGELGGIDIAVCNA 117 (276)
T ss_dssp HHHHHSCCSEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 13678776654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.062 Score=57.83 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=45.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++.|+|+|++|+.+++.|. ..|.+|++.|.+++..+ +... .++.+.+ ++++|.|++
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~----------~~G~~V~~~dr~~~~~~-----g~~~----~~~l~el----l~~aDvVil 221 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAE----------AFDCPISYFSRSKKPNT-----NYTY----YGSVVEL----ASNSDILVV 221 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSCCTTC-----CSEE----ESCHHHH----HHTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEECCCchhcc-----Ccee----cCCHHHH----HhcCCEEEE
Confidence 46999999999999999998 88999999999887532 3221 1232222 247898988
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
+++..
T Consensus 222 ~vP~~ 226 (333)
T 3ba1_A 222 ACPLT 226 (333)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 88764
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.33 Score=48.75 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=53.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHH----hcC--CCE-EEccCCCHHHHHhc--
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESR----KLG--FPI-LYGDASRPAVLLSA-- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~----~~~--~~~-v~GD~t~~~~L~~a-- 601 (791)
+++|.|. |.+|+.+++.|. ++|++|+++ +.+++..+++. +.+ ... +.+|.+|++.++++
T Consensus 3 ~vlITGasggiG~~~a~~l~----------~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 3 KALITGASRGIGRAIALRLA----------EDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp EEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 5777776 789999999998 899999998 88887765543 223 345 88999999988765
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
..++.|.+|-..+
T Consensus 73 ~~~~~~~~~d~li~~Ag 89 (245)
T 2ph3_A 73 QAAEVLGGLDTLVNNAG 89 (245)
T ss_dssp HHHHHHTCCCEEEECCC
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1246787776543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.31 E-value=0.13 Score=53.48 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=52.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CC--CEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GF--PILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~--~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|+|.|.+|+.+++.|. +.|.+|++++.++++.+.+.+. +. .+.. .+.+.+.+ +++|
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~----------~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~---~~~~~~~~---~~~D 182 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLL----------SLDCAVTITNRTVSRAEELAKLFAHTGSIQA---LSMDELEG---HEFD 182 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHTGGGSSEEE---CCSGGGTT---CCCS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHhhccCCeeE---ecHHHhcc---CCCC
Confidence 347999999999999999998 7889999999999987766532 11 2222 23233332 6899
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.+|.+++...
T Consensus 183 ivVn~t~~~~ 192 (271)
T 1nyt_A 183 LIINATSSGI 192 (271)
T ss_dssp EEEECCSCGG
T ss_pred EEEECCCCCC
Confidence 9998887643
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.4 Score=47.28 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHhcCC---CEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRKLGF---PILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~~~~---~~v~GD~t~~~~L~~ 600 (791)
..+|.|+|. |.+|+.++..+. ..| .+++++|.|+++++- +.+..+ .+.. .+|. .
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~----------~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~--t~d~---~- 71 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAA----------MMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--TSDI---K- 71 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHH----------HTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE--ESCH---H-
T ss_pred CCEEEEECCCChHHHHHHHHHH----------hcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE--cCCH---H-
Confidence 457999997 999999998876 455 489999999987553 333222 1111 1222 1
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHHH---HHHCCC--CeEEcCc
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLD---LKKAGA--TDAILEN 660 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~~---L~~~Ga--d~Vi~p~ 660 (791)
..+++||.||++.+. | ..|.. ++..+++..|+..++..+.|+.+.-- ++..|- ++|+.-.
T Consensus 72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~t 151 (343)
T 3fi9_A 72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTLA 151 (343)
T ss_dssp HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEec
Confidence 124689988887542 2 34544 34566777888753445566654322 244453 4566544
Q ss_pred HHHHHHHHHHHHhhcCCChHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~ 682 (791)
.+-..|+-..+-+.+|+++..+
T Consensus 152 ~LDs~R~~~~la~~l~v~~~~v 173 (343)
T 3fi9_A 152 GLDSTRLQSELAKHFGIKQSLV 173 (343)
T ss_dssp CHHHHHHHHHHHHHHTSCGGGE
T ss_pred CcHHHHHHHHHHHHhCcCHHHc
Confidence 4444566666666778887655
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.22 Score=50.55 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+ . ...++.+|.+|++.++++=
T Consensus 10 k~vlITGas~giG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALA----------REGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 45777776 678999999998 889999999999988666543 2 3567889999998776541
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 80 ~~~~~g~id~li~~A 94 (253)
T 3qiv_A 80 TLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 13678777664
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.26 Score=50.52 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---hHHHHHh--cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---~v~~~~~--~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++ ..+++.+ ....++.+|.+|++.++++=
T Consensus 9 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (261)
T 2wyu_A 9 KKALVMGVTNQRSLGFAIAAKLK----------EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFA 78 (261)
T ss_dssp CEEEEESCCSSSSHHHHHHHHHH----------HHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 46888897 589999999998 78999999999886 4444443 23678899999998776541
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 79 ~~~~~~g~iD~lv~~A 94 (261)
T 2wyu_A 79 GVKEAFGGLDYLVHAI 94 (261)
T ss_dssp HHHHHHSSEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12567776654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.29 E-value=0.21 Score=51.78 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c-----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~-----~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ . ...++.+|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 76 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFA----------QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQI 76 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHH
Confidence 35777765 689999999998 889999999999987665432 1 356788999999876653
Q ss_pred ------CCCCCcEEEEEe
Q 003861 602 ------GITSPKAVMIMY 613 (791)
Q Consensus 602 ------gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~~~~~~~g~iD~lv~nA 94 (280)
T 1xkq_A 77 INSTLKQFGKIDVLVNNA 94 (280)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 123577776554
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.27 E-value=0.39 Score=49.83 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+++. +.+ ..++.+|.+|++.++++
T Consensus 45 k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 114 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLA----------KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINK 114 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHT----------TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHH
Confidence 45777765 789999999998 88999999998887765443 223 45778999999988764
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 115 ~~~~~~~id~li~~Ag 130 (285)
T 2c07_A 115 ILTEHKNVDILVNNAG 130 (285)
T ss_dssp HHHHCSCCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 2246787776553
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.089 Score=54.23 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.| .|.+|+.+++.|. ++|++|++.|.+++..+ ..+..++.+|.+|++.++++ +++.|.+|-
T Consensus 5 ~vlVTGasg~IG~~la~~L~----------~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~-~~~~D~vi~ 70 (267)
T 3rft_A 5 RLLVTGAAGQLGRVMRERLA----------PMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAM-VAGCDGIVH 70 (267)
T ss_dssp EEEEESTTSHHHHHHHHHTG----------GGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHH-HTTCSEEEE
T ss_pred EEEEECCCCHHHHHHHHHHH----------hcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHH-HcCCCEEEE
Confidence 578888 5899999999998 88999999999886543 34678899999999988875 347888876
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
..
T Consensus 71 ~A 72 (267)
T 3rft_A 71 LG 72 (267)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.33 Score=54.22 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=38.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 582 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~ 582 (791)
+-++.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La----------~~G~~V~~~D~~~~kv~~l~~ 49 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFS----------DFGHEVVCVDKDARKIELLHQ 49 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHTT
T ss_pred ceEEEEEcCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHhc
Confidence 446899999999999999998 889999999999999999876
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=91.25 E-value=1.3 Score=40.59 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=67.0
Q ss_pred CCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiar 638 (791)
+..+.++|.|+...+.+ ++.|+.+... .+-.+.++.+.-...|.+++...-+ ......+..+|+.+|++++++-
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF-ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE-CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 45689999998765443 4567776643 3345677777767889888876543 3556778888999999998877
Q ss_pred ecCh--hhHHHHHHCCCCeEEcCc
Q 003861 639 AQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
.... +......+.|++.++.-.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kP 105 (155)
T 1qkk_A 82 TGHGDIPMAVQAIQDGAYDFIAKP 105 (155)
T ss_dssp ECGGGHHHHHHHHHTTCCEEEESS
T ss_pred ECCCChHHHHHHHhcCCCeEEeCC
Confidence 6543 455667789999877643
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.08 Score=58.50 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=63.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCC-------------CHH-
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS-------------RPA- 596 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t-------------~~~- 596 (791)
..+++|+|.|.+|+.+++.+. ..|.+|+++|.++++.+.+++.|...+.-|.. +++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~----------~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~ 241 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAF 241 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHH
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHH
Confidence 458999999999999999998 78999999999999988887777655432221 111
Q ss_pred ------HHHhcCCCCCcEEEEEe--CC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 597 ------VLLSAGITSPKAVMIMY--TD-KKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 597 ------~L~~agi~~a~~viv~~--~~-d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++++ +..+|.+|.++ +. +...+.....++.+.|+..++--+
T Consensus 242 ~~~~~~~l~e~-~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 242 IKAEMELFAAQ-AKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHH-HHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHH-hCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 23221 24689888773 21 111222234456666665555544
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.29 Score=49.91 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---------cCCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---------~~~~~v~GD~t~~~~L~~ 600 (791)
.+.++|.|. |-+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++..++
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLA----------TDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHH----------HHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHH
Confidence 345777776 789999999998 889999999999988666542 345688899999887665
Q ss_pred c------CCCCCcEEEEEeC
Q 003861 601 A------GITSPKAVMIMYT 614 (791)
Q Consensus 601 a------gi~~a~~viv~~~ 614 (791)
+ ...+.|.+|-..+
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg 96 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAA 96 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCC
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 3 1136677765543
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=91.20 E-value=0.36 Score=43.32 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEE
Q 003861 562 TVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~ii 636 (791)
+...+++++|.|+...+.++ +.++.+...+ +-.+.++.+.-...|.+++-..- +......+..+|+.+|+++++
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~-~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAG-DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEES-SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC-CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 34567888888887654433 3444444332 33445555544578888776653 345677888999999998888
Q ss_pred EEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 637 ARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 637 ara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
+-..+. +......++|++.++.-.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP 109 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKP 109 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSS
T ss_pred EEecCcChHHHHHHHhCCcceeEcCC
Confidence 766544 466677899999876543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.22 Score=50.89 Aligned_cols=72 Identities=19% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++=
T Consensus 13 k~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (265)
T 2o23_A 13 LVAVITGGASGLGLATAERLV----------GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKG 82 (265)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35777766 788999999998 889999999999887665543 24677889999998776541
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 83 ~~g~id~li~~A 94 (265)
T 2o23_A 83 KFGRVDVAVNCA 94 (265)
T ss_dssp HHSCCCEEEECC
T ss_pred HCCCCCEEEECC
Confidence 12678777554
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.26 Score=50.53 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=55.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMV----------AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHH
Confidence 45777775 688999999998 789999999999988766543 23567899999998876541
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 78 ~~g~iD~lv~~Ag 90 (260)
T 1nff_A 78 AFGGLHVLVNNAG 90 (260)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 126787776543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.26 Score=51.08 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc-----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL-----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~-----~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+... +. ...++.+|.+|++..+++
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~ 81 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLV----------AAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARA 81 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHH
Confidence 35677775 688999999998 89999999999998765543 22 356788999999876653
Q ss_pred C------CCCCcEEEEEeC
Q 003861 602 G------ITSPKAVMIMYT 614 (791)
Q Consensus 602 g------i~~a~~viv~~~ 614 (791)
= ..+.|.+|-..+
T Consensus 82 ~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 82 VDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp HHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 1 135677765543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.17 E-value=0.27 Score=50.58 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+. ....+.+|.+|++.++++
T Consensus 7 k~vlITGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFA----------REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALE 76 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45777776 789999999998 8899999999999887766542 456788999999877653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 77 ~~g~iD~lvnnA 88 (263)
T 2a4k_A 77 EFGRLHGVAHFA 88 (263)
T ss_dssp HHSCCCEEEEGG
T ss_pred HcCCCcEEEECC
Confidence 123567776544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.16 E-value=1.2 Score=47.57 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=84.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHH----HHhc----CCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~----~~~~----~~~~v~GD~t~~~~L~ 599 (791)
...++.|+|.|.+|..++..|. ..|. +++++|.++++++- +.+. ....+.+ .+|.+
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~----------~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d~~--- 83 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISIL----------MKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS-SKDYS--- 83 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEE-CSSGG---
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEE-cCCHH---
Confidence 4568999999999999999887 4565 89999999986543 3321 1222222 12332
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH--HHHH-HCCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL--LDLK-KAGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~--~~L~-~~Ga--d~Vi~p 659 (791)
.+++||.+|++.+. | +.|..+ +..+++..|+..++. +.|+.+. ..+. ..|. ++|+--
T Consensus 84 --~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlv-vtNPvdi~t~~~~k~sg~p~~rviG~ 160 (331)
T 4aj2_A 84 --VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLI-VSNPVDILTYVAWKISGFPKNRVIGS 160 (331)
T ss_dssp --GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred --HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-ecChHHHHHHHHHHHhCCCHHHEEee
Confidence 37899988887642 3 456554 456677788865554 4455443 2233 3354 356655
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
..+-..|+-..+-+.+|+++..++
T Consensus 161 gt~LD~~R~~~~la~~lgv~~~~V~ 185 (331)
T 4aj2_A 161 GCNLDSARFRYLMGERLGVHPLSCH 185 (331)
T ss_dssp TTHHHHHHHHHHHHHHHTSCGGGCB
T ss_pred ccccHHHHHHHHHHHHhCCCHHHCE
Confidence 343345666666666777775543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.29 Score=52.08 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC---hhhHHHHHh-----cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN---PSVVKESRK-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d---~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a 601 (791)
.++++|+|.|..|+.++..|. +.|. +|++++.+ +++.+++.+ .+..+...+..+.+-|.++
T Consensus 154 gk~~lVlGaGG~g~aia~~L~----------~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAA----------LDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHH----------HCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh
Confidence 357999999999999999998 7898 89999999 777766543 2334445566665555432
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
+.++|.||-+|+
T Consensus 224 -l~~aDiIINaTp 235 (315)
T 3tnl_A 224 -IAESVIFTNATG 235 (315)
T ss_dssp -HHTCSEEEECSS
T ss_pred -hcCCCEEEECcc
Confidence 567898887776
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.43 Score=47.81 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=55.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~agi 603 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++=-
T Consensus 3 k~vlITGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALA----------RDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 35777776 678999999998 899999999999987665432 245677899999998876522
Q ss_pred ------CCCcEEEEEeC
Q 003861 604 ------TSPKAVMIMYT 614 (791)
Q Consensus 604 ------~~a~~viv~~~ 614 (791)
.+.|.+|-..+
T Consensus 73 ~~~~~~g~id~li~~Ag 89 (235)
T 3l77_A 73 KVLERFGDVDVVVANAG 89 (235)
T ss_dssp -HHHHHSSCSEEEECCC
T ss_pred HHHHhcCCCCEEEECCc
Confidence 26787776653
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=91.11 E-value=0.31 Score=50.19 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCEEEeC---CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-HHHHHh---cCCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVG---FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRK---LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G---~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v~~~~~---~~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.| -|.+|+.+++.|. ++|++|+++|.+++. .+++.+ ....++.+|.+|++.++++
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQ----------EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGR 77 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHH----------HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHH
Confidence 4688889 4899999999998 889999999998865 355443 2467889999999876653
Q ss_pred -----C-CCCCcEEEEEe
Q 003861 602 -----G-ITSPKAVMIMY 613 (791)
Q Consensus 602 -----g-i~~a~~viv~~ 613 (791)
| ..+.|.+|-..
T Consensus 78 ~~~~~g~~~~iD~lv~nA 95 (269)
T 2h7i_A 78 VTEAIGAGNKLDGVVHSI 95 (269)
T ss_dssp HHHHHCTTCCEEEEEECC
T ss_pred HHHHhCCCCCceEEEECC
Confidence 1 11678776543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.74 Score=51.28 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=72.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh----cCC---CEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK----LGF---PILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~----~~~---~~v~GD~t~~~~L~~agi 603 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .|. .+..++.+|.+-+- .-
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~---------~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll--~~ 89 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMAR---------RDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNML--KD 89 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------CTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHT--TC
T ss_pred ceEEEEecCHHHHHHHHHHHh---------CCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHh--cC
Confidence 379999999999999998871 3466765 67999999877654 343 33333333444332 22
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
.+.|+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 90 ~~vD~V~i~tp~~~h-~~~~~~al~aG--khV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 148 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWH-HEHGVAAMKAG--KIVGMEVSGAITLEECWDYVKVSEQTGVPLMAL 148 (444)
T ss_dssp TTCCEEEECCCGGGH-HHHHHHHHHTT--CEEEECCCCCSSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCCCEEEEcCCcHHH-HHHHHHHHHCC--CeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 578999999997643 44455555544 467773 3455554444 5667776554
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.21 Score=51.04 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+ . ...++.+|.+|++.++++-
T Consensus 8 k~vlVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFA----------AEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHH
Confidence 45777776 578999999998 889999999999987655432 2 3567889999998776531
Q ss_pred C---CCCcEEEEEeC
Q 003861 603 I---TSPKAVMIMYT 614 (791)
Q Consensus 603 i---~~a~~viv~~~ 614 (791)
+ .+.|.+|-..+
T Consensus 78 ~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 78 ADAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHHSCEEEEEECCC
T ss_pred HHhhCCceEEEECCC
Confidence 1 36677765543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.083 Score=57.27 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=54.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.+++. +.+.+.|...+ .+-++.+ +++|.|++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~----------~~G~~V~~~d~~~~~-~~~~~~g~~~~---~~l~ell-----~~aDiV~l 221 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGR----------AFGMNVLVWGRENSK-ERARADGFAVA---ESKDALF-----EQSDVLSV 221 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSHHHH-HHHHHTTCEEC---SSHHHHH-----HHCSEEEE
T ss_pred CEEEEEeECHHHHHHHHHHH----------hCCCEEEEECCCCCH-HHHHhcCceEe---CCHHHHH-----hhCCEEEE
Confidence 46999999999999999998 889999999988643 44555565321 1223344 35788888
Q ss_pred EeCCHH--HHHHHHHHHHHhCCCCcE
Q 003861 612 MYTDKK--RTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 612 ~~~~d~--~n~~~~~~ar~l~p~~~i 635 (791)
+.+..+ .++.-....+.+.|+..+
T Consensus 222 ~~Plt~~t~~li~~~~l~~mk~gail 247 (352)
T 3gg9_A 222 HLRLNDETRSIITVADLTRMKPTALF 247 (352)
T ss_dssp CCCCSTTTTTCBCHHHHTTSCTTCEE
T ss_pred eccCcHHHHHhhCHHHHhhCCCCcEE
Confidence 776432 222222334445555333
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.17 Score=53.05 Aligned_cols=121 Identities=8% Similarity=-0.069 Sum_probs=69.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc-CC--CEEEccCCCHHHHHhcCCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GF--PILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~-~~--~~v~GD~t~~~~L~~agi~~a 606 (791)
.++++|+|.|..|+.++..|. +.|. +|++++.++++.+++.+. +. .+-..+ ++++. +++
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~----------~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~------~~~l~-~~a 188 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLL----------DQQPASITVTNRTFAKAEQLAELVAAYGEVKAQA------FEQLK-QSY 188 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEE------GGGCC-SCE
T ss_pred CCEEEEECchHHHHHHHHHHH----------hcCCCeEEEEECCHHHHHHHHHHhhccCCeeEee------HHHhc-CCC
Confidence 457999999999999999998 7896 899999999998776542 11 122112 22222 789
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHHHHCCCCeEEcCcHHHHHHHH
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDLKKAGATDAILENAETSLQLG 668 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~---~~~L~~~Gad~Vi~p~~~~~~~la 668 (791)
|.||-+|+.....-........+.|+..++=-+.++.. .+..++.|+..++.-....-.|-+
T Consensus 189 DiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~~~~~Gl~Mlv~Qa~ 253 (281)
T 3o8q_A 189 DVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAA 253 (281)
T ss_dssp EEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCCHHHHHHHHTTCSEEECTHHHHHHHHH
T ss_pred CEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccCHHHHHHHHCCCCEEECcHHHHHHHHH
Confidence 98888887642110000001112222112223334433 344567798766666543333333
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.3 Score=49.98 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=54.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +. ...++.+|.+|++.++++=
T Consensus 15 k~vlITGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (266)
T 1xq1_A 15 KTVLVTGGTKGIGHAIVEEFA----------GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT 84 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHH
Confidence 45777765 789999999998 78999999999988765543 22 3567889999998776541
Q ss_pred C-----CCCcEEEEEeC
Q 003861 603 I-----TSPKAVMIMYT 614 (791)
Q Consensus 603 i-----~~a~~viv~~~ 614 (791)
+ .+.|.+|-..+
T Consensus 85 ~~~~~~~~id~li~~Ag 101 (266)
T 1xq1_A 85 VSSMFGGKLDILINNLG 101 (266)
T ss_dssp HHHHHTTCCSEEEEECC
T ss_pred HHHHhCCCCcEEEECCC
Confidence 1 46787776543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=91.07 E-value=0.87 Score=48.27 Aligned_cols=132 Identities=18% Similarity=0.229 Sum_probs=82.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH-HHh--cC-----CCEEEccCCCHHHHHhcC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE-SRK--LG-----FPILYGDASRPAVLLSAG 602 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~-~~~--~~-----~~~v~GD~t~~~~L~~ag 602 (791)
++.|+|.|.+|..++-.|. ..+ .+++++|.|+++.+. +.+ +. -.-+.+| +.+ .
T Consensus 2 KI~IiGaG~vG~~~a~~l~----------~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~--~~~-----a 64 (310)
T 2xxj_A 2 KVGIVGSGMVGSATAYALA----------LLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG--SYG-----D 64 (310)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEEC--CGG-----G
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEEC--CHH-----H
Confidence 5889999999999999886 333 589999999987653 222 11 1123332 222 2
Q ss_pred CCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHCCCC--eEEcC-cH
Q 003861 603 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE-NA 661 (791)
Q Consensus 603 i~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L-~~~Gad--~Vi~p-~~ 661 (791)
+++||.||++.+-. ..|.. ++..+++.+|+..++. ..||.+.- .+ +..|.+ +|+-- ..
T Consensus 65 ~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~s~~p~~rviG~gt~ 143 (310)
T 2xxj_A 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV-ATNPVDVMTQVAYALSGLPPGRVVGSGTI 143 (310)
T ss_dssp GTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CSSSHHHHHHHHHHHHTCCGGGEEECTTH
T ss_pred hCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEE-ecCchHHHHHHHHHHcCCCHHHEEecCcc
Confidence 68999998876531 34443 3455666789977666 46665542 23 333443 67665 44
Q ss_pred HHHHHHHHHHHhhcCCChHHH
Q 003861 662 ETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 662 ~~~~~la~~~l~~l~~~~~~~ 682 (791)
+-..++-+.+-+.+|+++..+
T Consensus 144 LD~~R~~~~la~~lgv~~~~v 164 (310)
T 2xxj_A 144 LDTARFRALLAEYLRVAPQSV 164 (310)
T ss_dssp HHHHHHHHHHHHHHTSCGGGE
T ss_pred hhHHHHHHHHHHHhCcCHHHe
Confidence 334566666666667776443
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=91.06 E-value=1 Score=40.59 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=64.3
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcC--CCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAG--ITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~ag--i~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+++++|.|+...+.+ ++.|+.+...+ +..+.++... -...|.+++-..- +......+..+|+.+|++++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~-~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTAS-SSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeC-CHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4688888888765443 34666665443 3344555444 4678988877653 3456778888999999999887
Q ss_pred EecCh--hhHHHHHHCCCCeEEcCc
Q 003861 638 RAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 638 ra~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
-..+. +......++|++..+.-.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp 107 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKP 107 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESS
T ss_pred EECCCCHHHHHHHHHhCcceeEeCC
Confidence 76654 446677899999876544
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.23 Score=53.98 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=49.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-------CcEEEEcCChh-----hHHHHHhcCCCE-----------E
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-------WPFVAFDLNPS-----VVKESRKLGFPI-----------L 588 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-------~~vvvID~d~~-----~v~~~~~~~~~~-----------v 588 (791)
.++.|+|.|.+|..++..|. +.| ++|+++|.+++ +.+.+++.+... +
T Consensus 22 ~kI~iIGaG~mG~alA~~L~----------~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i 91 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVG----------TNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNI 91 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHH----------HHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTE
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCe
Confidence 36999999999999999998 677 89999999998 887776532110 1
Q ss_pred EccCCCH-HHHHhcCCCCCcEEEEEeCCH
Q 003861 589 YGDASRP-AVLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 589 ~GD~t~~-~~L~~agi~~a~~viv~~~~d 616 (791)
..- +|+ +. ++++|.|++++.+.
T Consensus 92 ~~~-~~~~ea-----~~~aDvVilav~~~ 114 (375)
T 1yj8_A 92 VAH-SDLASV-----INDADLLIFIVPCQ 114 (375)
T ss_dssp EEE-SSTHHH-----HTTCSEEEECCCHH
T ss_pred EEE-CCHHHH-----HcCCCEEEEcCCHH
Confidence 111 122 22 35789999999853
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.84 Score=40.86 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=60.2
Q ss_pred CcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC------HHHHHHHHHHHHHhCCCCc
Q 003861 565 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD------KKRTIEAVQRLRLAFPAIP 634 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~------d~~n~~~~~~ar~l~p~~~ 634 (791)
.+++++|.|+...+.++ +.|+.+... .+-.+.++...-...|.+++-..- +......+..+|+.+|+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITL-SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEE-CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEe-CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 45777777776544433 345555532 223445554444568888776543 3456677888999999999
Q ss_pred EEEEecC--hhhHHHHHHCCCCeEEcCc
Q 003861 635 IYARAQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 635 iiara~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
+++-..+ .+......+.|++.++.-.
T Consensus 83 ii~ls~~~~~~~~~~~~~~g~~~~l~kp 110 (140)
T 2qr3_A 83 VVLFTAYADIDLAVRGIKEGASDFVVKP 110 (140)
T ss_dssp EEEEEEGGGHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCHHHHHHHHHcCchheeeCC
Confidence 7776654 3455677889998876543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.3 Score=52.13 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=80.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHH----Hh----c--CCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKES----RK----L--GFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~----~~----~--~~~~v~GD~t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. ..|. +++++|.|+++++.. ++ . ...+.. .+|.+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la----------~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~--t~d~~---- 68 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIV----------QKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG--SNTYD---- 68 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE--ECCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE--CCCHH----
Confidence 47999999999999999998 6676 899999999876532 11 1 122221 02222
Q ss_pred cCCCCCcEEEEEeCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHHC---CCCe
Q 003861 601 AGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKKA---GATD 655 (791)
Q Consensus 601 agi~~a~~viv~~~~--------------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~~---Gad~ 655 (791)
.+++||.||++.+- | ..|.. ++..+++..|+..++. +.|+.+. ..+.+. -.++
T Consensus 69 -al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNP~~~~t~~~~~~~g~~~~r 146 (322)
T 1t2d_A 69 -DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV-VTNPVDVMVQLLHQHSGVPKNK 146 (322)
T ss_dssp -GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE-CSSSHHHHHHHHHHHHCCCGGG
T ss_pred -HhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-ecCChHHHHHHHHHhcCCChHH
Confidence 36799999988621 1 12333 4455566678866555 3554442 333332 2455
Q ss_pred EEcC-cHHHHHHHHHHHHhhcCCChHHH
Q 003861 656 AILE-NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 656 Vi~p-~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
|+-- ...-..|+-..+-+.+|+++..+
T Consensus 147 viG~gt~ld~~R~~~~la~~lgv~~~~v 174 (322)
T 1t2d_A 147 IIGLGGVLDTSRLKYYISQKLNVCPRDV 174 (322)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred EEeccCcccHHHHHHHHHHHhCCCHHHe
Confidence 6655 44444555656666667766443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.99 E-value=0.47 Score=51.45 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..+++..++.. +.+|.++
T Consensus 195 g~~VlV~GaG~vG~~aiqlak----------~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~-~g~Dvvi 262 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAH----------AMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHL-KSFDFIL 262 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTT-TCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCcEEe-ccccHHHHHHhh-cCCCEEE
Confidence 457999999999999999887 7899999999999999999988876543 666777666554 6789888
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
-+++.+
T Consensus 263 d~~g~~ 268 (369)
T 1uuf_A 263 NTVAAP 268 (369)
T ss_dssp ECCSSC
T ss_pred ECCCCH
Confidence 888764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.042 Score=54.66 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=47.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
.++.|+|+|.+|+.+++.|. +.|++|+++|.+++ .+.+.+.+..+. +.++. ++++|.|++
T Consensus 20 ~~I~iIG~G~mG~~la~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~----~~~~~-----~~~aDvVil 79 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKML----------QCGYSVVFGSRNPQ-VSSLLPRGAEVL----CYSEA-----ASRSDVIVL 79 (201)
Confidence 36889999999999999998 78999999999887 454444443221 11222 357899999
Q ss_pred EeCCH
Q 003861 612 MYTDK 616 (791)
Q Consensus 612 ~~~~d 616 (791)
++..+
T Consensus 80 av~~~ 84 (201)
T 2yjz_A 80 AVHRE 84 (201)
Confidence 88875
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.24 Score=50.65 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. +.+ ..++.+|.+|++.++++=
T Consensus 10 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELA----------SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNT 79 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 35777775 688999999998 88999999999988765543 223 567889999998776531
Q ss_pred ----C-CCCcEEEEEeC
Q 003861 603 ----I-TSPKAVMIMYT 614 (791)
Q Consensus 603 ----i-~~a~~viv~~~ 614 (791)
. .+.|.+|-..+
T Consensus 80 ~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 80 VANHFHGKLNILVNNAG 96 (260)
T ss_dssp HHHHTTTCCCEEEECCC
T ss_pred HHHHcCCCCCEEEECCC
Confidence 1 46787776543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.25 Score=51.20 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=53.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc-----CC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA-----GI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a-----gi 603 (791)
.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+. ...++.+|.+|++.++++ ..
T Consensus 32 ~vlVTGas~GIG~aia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 32 SAIVSGGAGGLGEATVRRLH----------ADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred EEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4667776 678999999998 8899999999999987776542 467889999999877653 12
Q ss_pred CCCcEEEEE
Q 003861 604 TSPKAVMIM 612 (791)
Q Consensus 604 ~~a~~viv~ 612 (791)
.+.|.+|..
T Consensus 102 ~~id~lv~~ 110 (281)
T 3ppi_A 102 GRLRYAVVA 110 (281)
T ss_dssp SEEEEEEEC
T ss_pred CCCCeEEEc
Confidence 355666654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.95 E-value=0.27 Score=50.32 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+ .....+.+|.+|++..+++
T Consensus 9 k~~lVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLV----------EGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 35777776 679999999998 899999999999998877654 3467889999999877643
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 79 ~~g~id~lv~nA 90 (255)
T 4eso_A 79 TLGAIDLLHINA 90 (255)
T ss_dssp HHSSEEEEEECC
T ss_pred HhCCCCEEEECC
Confidence 123567666543
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=90.93 E-value=0.21 Score=56.58 Aligned_cols=88 Identities=26% Similarity=0.410 Sum_probs=65.3
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+++.++|.|..|.. +|+.|. +.|++|.+.|.++. ..+++++.|..+..| .+++. +.++|.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~-----~~~~d~ 84 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLA----------NEGYQISGSDLAPNSVTQHLTALGAQIYFH--HRPEN-----VLDASV 84 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHH----------HTTCEEEEECSSCCHHHHHHHHTTCEEESS--CCGGG-----GTTCSE
T ss_pred CCEEEEEEEcHhhHHHHHHHHH----------hCCCeEEEEECCCCHHHHHHHHCCCEEECC--CCHHH-----cCCCCE
Confidence 468999999999996 899998 89999999998654 456788889998887 34443 356898
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
||+..+=+.+|-. ...+|+.+ ++|+-+
T Consensus 85 vV~Spgi~~~~p~-~~~a~~~g--i~v~~~ 111 (494)
T 4hv4_A 85 VVVSTAISADNPE-IVAAREAR--IPVIRR 111 (494)
T ss_dssp EEECTTSCTTCHH-HHHHHHTT--CCEEEH
T ss_pred EEECCCCCCCCHH-HHHHHHCC--CCEEcH
Confidence 8776544444444 44566664 677765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=1.7 Score=46.02 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHhc----CCC-EEEccCCCHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRKL----GFP-ILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~~----~~~-~v~GD~t~~~~L~~ 600 (791)
.++.|+|.|.+|..++..|. ..+ .+++++|.|+++++. +.+. +.+ -+.+ .+.+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~----------~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~~~---- 70 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLV----------NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GEYS---- 70 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CCGG----
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CCHH----
Confidence 47999999999999999887 445 489999999976543 1221 011 2333 2222
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHCCCC--eEEcC-
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE- 659 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~~~--~L-~~~Gad--~Vi~p- 659 (791)
.+++||.||++.+-. ..|.. ++..+++..|+..++. ..|+.+.- .+ +..|.+ +|+--
T Consensus 71 -a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~t~~~~k~~~~p~~rviG~g 148 (317)
T 3d0o_A 71 -DCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV-ATNPVDILAYATWKFSGLPKERVIGSG 148 (317)
T ss_dssp -GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE-CSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred -HhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCcHHHHHHHHHHHhCCCHHHEEecC
Confidence 267999999887531 34443 3445566688877777 56665542 23 333443 67655
Q ss_pred cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 ~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..++-..+-+.+|+++..+
T Consensus 149 t~lD~~r~~~~la~~l~v~~~~v 171 (317)
T 3d0o_A 149 TILDSARFRLLLSEAFDVAPRSV 171 (317)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGC
T ss_pred ccccHHHHHHHHHHHhCcChhhE
Confidence 44434566666666677776544
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} | Back alignment and structure |
|---|
Probab=90.92 E-value=1.3 Score=40.80 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=66.4
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhC--CCCc
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAF--PAIP 634 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~--p~~~ 634 (791)
....+|.++|.|+...+.+ ++.|+.+... .+-.+.++.+.-...|.+++-..- +..-..++..+|+.. ++++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHV-RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE-SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe-CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3466789999998865544 3457766543 234566777777789988887653 244567778888863 7788
Q ss_pred EEEEe--cChhhHHHHHHCCCCeEEcCc
Q 003861 635 IYARA--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 635 iiara--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+++-. .+.+......++|++.++.-.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKP 111 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESS
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCC
Confidence 77766 455566677889999877644
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.36 Score=50.17 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=54.2
Q ss_pred CCEEEeCC---ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh---hHHHHHh--cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRK--LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~---G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~---~v~~~~~--~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++ ..+++.+ .+..++.+|.+|++.++++
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFH----------REGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKK 91 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 46888887 589999999998 78999999999886 4444443 2367899999999877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 92 ~~~~~~g~iD~lv~~A 107 (285)
T 2p91_A 92 FLEENWGSLDIIVHSI 107 (285)
T ss_dssp HHHHHTSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 123677776654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.89 E-value=0.29 Score=49.93 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ..++.+|.+|++.++++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLV----------KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 45777775 689999999998 88999999999988765443 223 56788999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 73 ~~~~~g~id~lv~nA 87 (256)
T 1geg_A 73 ARKTLGGFDVIVNNA 87 (256)
T ss_dssp HHHHTTCCCEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 123678777654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.31 Score=50.51 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=55.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++..+++
T Consensus 29 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALA----------GAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 45677776 679999999998 899999999999998776643 3577889999999877654
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 99 ~~g~iD~lVnnA 110 (272)
T 4dyv_A 99 KFGRVDVLFNNA 110 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 113667776554
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=1.6 Score=46.25 Aligned_cols=134 Identities=17% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHhcCC-----CEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRKLGF-----PILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~~~~-----~~v~GD~t~~~~L~ 599 (791)
..++.|+|.|.+|..++..|. ..+ .+++++|.|+++.+. +.+... .-+.. .+.
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~----------~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~~---- 69 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALM----------NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GDY---- 69 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CCG----
T ss_pred CCEEEEECcCHHHHHHHHHHH----------hCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--CcH----
Confidence 457999999999999999986 334 389999999986543 122110 11222 122
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcC
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE 659 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p 659 (791)
..+++||.||++.+- | ..|.. ++..+++..|+..++. +.|+-+. ..+++ .|. ++|+--
T Consensus 70 -~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv-~tNPv~~~~~~~~~~s~~p~~rviG~ 147 (316)
T 1ldn_A 70 -DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV-ATNPVDILTYATWKFSGLPHERVIGS 147 (316)
T ss_dssp -GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred -HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEE-eCCchHHHHHHHHHHhCCCHHHEEec
Confidence 237899999888532 1 33443 3555666788866555 4555443 23333 343 367644
Q ss_pred -cHHHHHHHHHHHHhhcCCChHHH
Q 003861 660 -NAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 660 -~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
...-..++-..+-+.+|+++..+
T Consensus 148 gt~lD~~r~~~~la~~l~v~~~~v 171 (316)
T 1ldn_A 148 GTILDTARFRFLLGEYFSVAPQNV 171 (316)
T ss_dssp TTHHHHHHHHHHHHHHHTSCGGGE
T ss_pred ccchHHHHHHHHHHHHhCCCHHHe
Confidence 43334566666666667776443
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.18 Score=50.51 Aligned_cols=87 Identities=21% Similarity=0.288 Sum_probs=56.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChh-hHHHHHhcCCCEEEccCCC-HHHHHhcCCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VVKESRKLGFPILYGDASR-PAVLLSAGITSP 606 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~-~v~~~~~~~~~~v~GD~t~-~~~L~~agi~~a 606 (791)
...+++|+|+|+.|+.+++.+.. ++.|++ |-++|.||+ +..+..-.|.++.. ..| ++.++ -.+.
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~--------~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~---~~~I 149 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFH--------DRNKMQISMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLI---DSDI 149 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCC--------TTSSEEEEEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC----CCSC
T ss_pred CCCEEEEECcCHHHHHHHHhhhc--------ccCCeEEEEEEeCCchhccCceeECCeEEeC--HHHHHHHHH---HcCC
Confidence 34579999999999999987530 144555 557899998 76541124777773 333 23333 3467
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
|.+++++++... -.++..+.+.+
T Consensus 150 d~vIIAvPs~~a-q~v~d~lv~~G 172 (212)
T 3keo_A 150 ETAILTVPSTEA-QEVADILVKAG 172 (212)
T ss_dssp CEEEECSCGGGH-HHHHHHHHHHT
T ss_pred CEEEEecCchhH-HHHHHHHHHcC
Confidence 999999987543 35666666664
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=90.79 E-value=0.48 Score=48.66 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh-------------------hhHHHH----Hh--cC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKES----RK--LG 584 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~-------------------~~v~~~----~~--~~ 584 (791)
+.+|+|+|.|..|..+++.|. ..|. .++++|.|. .+++.+ ++ .+
T Consensus 28 ~~~VlvvG~GglG~~va~~La----------~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 97 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLA----------GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD 97 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHH----------HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred cCcEEEEccCHHHHHHHHHHH----------HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 568999999999999999998 6777 688998874 333332 22 23
Q ss_pred CCE--EEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 585 FPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 585 ~~~--v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
..+ +..+.++ +.+++. ++++|.||.++++.+.-..+...+++.+
T Consensus 98 ~~v~~~~~~~~~-~~~~~~-~~~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 98 IQLTALQQRLTG-EALKDA-VARADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp SEEEEECSCCCH-HHHHHH-HHHCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CEEEEEeccCCH-HHHHHH-HhcCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 332 2223333 333322 4578989888888776666677777754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.3 Score=50.07 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=52.5
Q ss_pred CCEEEeCCC-h--hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---h----cCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFG-Q--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G-~--~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~----~~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|.+ . +|+.+++.|. ++|++|++++.+++..+.+. + ....++.+|.+|++.++++
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLH----------EAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETC 77 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHH----------HCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHH
Confidence 468888874 4 9999999998 88999999998875443332 2 1477899999999877653
Q ss_pred C------CCCCcEEEEEe
Q 003861 602 G------ITSPKAVMIMY 613 (791)
Q Consensus 602 g------i~~a~~viv~~ 613 (791)
= ..+.|.+|-..
T Consensus 78 ~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 78 FASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHhCCeeEEEEcc
Confidence 1 13567776554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.25 Score=50.68 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+.+ . ...++.+|.+|++.++++=
T Consensus 30 k~vlITGas~gIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLG----------SLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 45777775 789999999998 889999999999988665532 2 3567889999999876531
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 100 ~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHHSCCSEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 136787776543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.27 Score=52.83 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=58.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. ++++.+++ .+|.++
T Consensus 177 g~~VlV~GaG~vG~~a~qla~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~~~~~----~~D~vi 239 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAV----------AMGAEVSVFARNEHKKQDALSMGVKHFY---TDPKQCKE----ELDFII 239 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHH----------HTTCEEEEECSSSTTHHHHHHTTCSEEE---SSGGGCCS----CEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHhcCCCeec---CCHHHHhc----CCCEEE
Confidence 457999999999999999887 7899999999999999999999988777 55555544 789888
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
-+++++
T Consensus 240 d~~g~~ 245 (348)
T 3two_A 240 STIPTH 245 (348)
T ss_dssp ECCCSC
T ss_pred ECCCcH
Confidence 887765
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=90.74 E-value=0.27 Score=51.17 Aligned_cols=67 Identities=7% Similarity=0.060 Sum_probs=50.7
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
+++.|+|.|.+|+.+++.|. +.|.+|++.|.++++.+++.+. +.. ..+ + +++ -++++|.||
T Consensus 130 ~~v~iiGaG~~g~aia~~L~----------~~g~~V~v~~r~~~~~~~l~~~~g~~--~~~--~---~~~-~~~~aDiVi 191 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALV----------KEGAKVFLWNRTKEKAIKLAQKFPLE--VVN--S---PEE-VIDKVQVIV 191 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSSHHHHHHHTTTSCEE--ECS--C---GGG-TGGGCSEEE
T ss_pred CEEEEECchHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHcCCe--eeh--h---HHh-hhcCCCEEE
Confidence 47999999999999999998 7788999999999988877643 321 111 2 111 236899999
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
.+++..
T Consensus 192 ~atp~~ 197 (275)
T 2hk9_A 192 NTTSVG 197 (275)
T ss_dssp ECSSTT
T ss_pred EeCCCC
Confidence 999875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.22 Score=53.07 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=81.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCC--hhhHHH----HHh------cCCCEEEccCCCHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN--PSVVKE----SRK------LGFPILYGDASRPAV 597 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d--~~~v~~----~~~------~~~~~v~GD~t~~~~ 597 (791)
.+++.|+|.|.+|..++..|. ..|. +++++|.+ +++.+- +.+ ....+... +|.
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~----------~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~-- 73 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLA----------QKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDY-- 73 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCG--
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCH--
Confidence 457999999999999999997 6777 99999999 444321 111 11222221 122
Q ss_pred HHhcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHHH---HHHCCC--CeEE
Q 003861 598 LLSAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLD---LKKAGA--TDAI 657 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~~~---L~~~Ga--d~Vi 657 (791)
..+++||.+|++.+. | ..|.. ++..+++..|+..++. +.|+.+.-- .+..|. ++|+
T Consensus 74 ---~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlv-vsNPvd~~t~~~~k~sg~p~~rvi 149 (315)
T 3tl2_A 74 ---ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV-LTNPVDAMTYSVFKEAGFPKERVI 149 (315)
T ss_dssp ---GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred ---HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-CCChHHHHHHHHHHhcCCChHHEE
Confidence 356899999888632 2 33543 4455667788865444 445544332 244453 4566
Q ss_pred cC-cHHHHHHHHHHHHhhcCCChHHHH
Q 003861 658 LE-NAETSLQLGSKLLKGFGVMSDDVT 683 (791)
Q Consensus 658 ~p-~~~~~~~la~~~l~~l~~~~~~~~ 683 (791)
-- ...-..|.-..+-+.+|+++..++
T Consensus 150 G~gt~LD~~R~~~~la~~lgv~~~~v~ 176 (315)
T 3tl2_A 150 GQSGVLDTARFRTFIAQELNLSVKDIT 176 (315)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred eeccCcHHHHHHHHHHHHhCcCHHHce
Confidence 54 333345566666666777775543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.3 Score=49.99 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ ....++.+|.+|++.++++=
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFA----------KEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVE 77 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 45777776 789999999998 889999999999887655432 23567889999998776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 78 ~~~~~~g~id~lv~~Ag 94 (263)
T 3ai3_A 78 SVRSSFGGADILVNNAG 94 (263)
T ss_dssp HHHHHHSSCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 136787776553
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.70 E-value=0.4 Score=49.21 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=54.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++
T Consensus 11 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 11 RSVVVTGGTKGIGRGIATVFA----------RAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHH
Confidence 35677775 679999999998 899999999999988655432 2356789999999877654
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 81 ~~~~~~g~id~lvnnAg 97 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANAG 97 (262)
T ss_dssp HHHHHHSCCSEEEECCC
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1236787776543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.2 Score=50.72 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=54.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHH----hc--CCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR----KL--GFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+ ++..+.+. +. ...++.+|.+|++.++++=
T Consensus 8 k~vlVTGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 8 KRVLITGSSQGIGLATARLFA----------RAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 45777775 789999999998 789999999998 66654432 22 3667899999998877541
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 78 ~~~~~~g~id~vi~~Ag 94 (258)
T 3afn_B 78 EFVAKFGGIDVLINNAG 94 (258)
T ss_dssp HHHHHHSSCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 126787776543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.70 E-value=0.31 Score=49.29 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ . ....+.+|.+|++.++++
T Consensus 6 k~vlITGas~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALA----------SKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAE 75 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 45777776 678999999998 889999999999987665432 2 356788999999877653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 76 ~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 76 IKAENLAIDILVNNAG 91 (247)
T ss_dssp HHHTTCCCSEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 2346787776653
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.52 Score=51.00 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.++ +.|...+ -|.++++.++++. +.+|.+
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~----------~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~~~~~-~~~D~v 255 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAK----------AFGSKVTVISTSPSKKEEALKNFGADSF-LVSRDQEQMQAAA-GTLDGI 255 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCGGGHHHHHHTSCCSEE-EETTCHHHHHHTT-TCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcCCceE-EeccCHHHHHHhh-CCCCEE
Confidence 457999999999999999998 78999999999999988877 7776644 3677777776653 579988
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+-+++..
T Consensus 256 id~~g~~ 262 (366)
T 1yqd_A 256 IDTVSAV 262 (366)
T ss_dssp EECCSSC
T ss_pred EECCCcH
Confidence 8888764
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.68 E-value=0.17 Score=52.68 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=42.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcE-EEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~v-vvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|++|..+++.|. +. ++| .+.|.++++.+++.+ .+. .. ++.+ + -++++|.|+
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~-~~v~~v~~~~~~~~~~~~~~~g~--~~---~~~~---~-~~~~~DvVi 63 (276)
T 2i76_A 4 VLNFVGTGTLTRFFLECLK----------DR-YEIGYILSRSIDRARNLAEVYGG--KA---ATLE---K-HPELNGVVF 63 (276)
T ss_dssp CCEEESCCHHHHHHHHTTC---------------CCCEECSSHHHHHHHHHHTCC--CC---CSSC---C-CCC---CEE
T ss_pred eEEEEeCCHHHHHHHHHHH----------Hc-CcEEEEEeCCHHHHHHHHHHcCC--cc---CCHH---H-HHhcCCEEE
Confidence 5889999999999999997 55 888 489999999888764 343 11 1211 1 245688888
Q ss_pred EEeCCHH
Q 003861 611 IMYTDKK 617 (791)
Q Consensus 611 v~~~~d~ 617 (791)
++++++.
T Consensus 64 lav~~~~ 70 (276)
T 2i76_A 64 VIVPDRY 70 (276)
T ss_dssp ECSCTTT
T ss_pred EeCChHH
Confidence 8888764
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.28 Score=50.66 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC----CCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG----FPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~----~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+.+. +.+ ..++.+|.+|++.++++=
T Consensus 33 k~vlVTGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALV----------QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Confidence 45777765 789999999998 78999999999988765543 222 457789999998776531
Q ss_pred ------CCCCcEEEEEeC
Q 003861 603 ------ITSPKAVMIMYT 614 (791)
Q Consensus 603 ------i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 103 ~~~~~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 103 SAIRSQHSGVDICINNAG 120 (279)
T ss_dssp HHHHHHHCCCSEEEECCC
T ss_pred HHHHHhCCCCCEEEECCC
Confidence 236787776553
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=1.9 Score=37.88 Aligned_cols=96 Identities=20% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+.++.++|.|+...+.+ ++.|+.+... .+-.+.++...-...|.+++-..- +......+..+|+.+|++++++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~-~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH-QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEe-CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 35789999998865443 3467766543 234566766666678888776543 23456778888888888887776
Q ss_pred ecC--hhhHHHHHHCCCCeEEcCc
Q 003861 639 AQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
... .+......+.||+..+.-.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~Kp 105 (126)
T 1dbw_A 82 TGHGDVPMAVEAMKAGAVDFIEKP 105 (126)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESS
T ss_pred ECCCCHHHHHHHHHhCHHHheeCC
Confidence 654 3456677889999876543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=0.37 Score=49.07 Aligned_cols=72 Identities=8% Similarity=-0.045 Sum_probs=53.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCC-CCCcEEEEcCChhhHHHHH----h--cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNT-VGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~-~g~~vvvID~d~~~v~~~~----~--~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. + .|++|++++.+++..+... + ....++.+|.+|++.++++-
T Consensus 5 k~vlITGasggIG~~~a~~L~----------~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (276)
T 1wma_A 5 HVALVTGGNKGIGLAIVRDLC----------RLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRD 74 (276)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHH
Confidence 46777776 789999999998 7 8999999999987755432 2 24678899999998776541
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-+.
T Consensus 75 ~~~~~~g~id~li~~A 90 (276)
T 1wma_A 75 FLRKEYGGLDVLVNNA 90 (276)
T ss_dssp HHHHHHSSEEEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 12678776554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.61 E-value=1.1 Score=53.12 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCC-----------CEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGF-----------PILY 589 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~-----------~~v~ 589 (791)
++|.|+|.|.+|..+|..|. +.|++|+++|.|++.+++..+ .|. .+..
T Consensus 313 ~kV~VIGaG~MG~~iA~~la----------~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 382 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALI----------LSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG 382 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------TTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE
T ss_pred cEEEEEcCCHhhHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE
Confidence 47999999999999999998 889999999999998876532 111 0111
Q ss_pred ccCCCHHHHHhcCCCCCcEEEEEeCCHH
Q 003861 590 GDASRPAVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 590 GD~t~~~~L~~agi~~a~~viv~~~~d~ 617 (791)
. +|.+ .+++||.||.+..++.
T Consensus 383 ~--~d~~-----~~~~aDlVIeaVpe~~ 403 (725)
T 2wtb_A 383 S--LDYE-----SFRDVDMVIEAVIENI 403 (725)
T ss_dssp E--SSSG-----GGTTCSEEEECCCSCH
T ss_pred e--CCHH-----HHCCCCEEEEcCcCCH
Confidence 1 1222 3678999999998864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.25 Score=52.14 Aligned_cols=73 Identities=5% Similarity=-0.079 Sum_probs=53.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|.+|+.++..|. +.|. +|++++.++++.+.+.+. +... ++..+.+.+.+ -++++|.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~----------~~G~~~V~v~nR~~~ka~~la~~~~~~~--~~~~~~~~~~~-~~~~aDi 207 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLL----------STAAERIDMANRTVEKAERLVREGDERR--SAYFSLAEAET-RLAEYDI 207 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCSEEEEECSSHHHHHHHHHHSCSSS--CCEECHHHHHH-TGGGCSE
T ss_pred CCEEEEECcHHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHhhhcc--CceeeHHHHHh-hhccCCE
Confidence 357999999999999999998 7897 899999999998777643 2210 01112233433 3578999
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
||.+++..
T Consensus 208 vIn~t~~~ 215 (297)
T 2egg_A 208 IINTTSVG 215 (297)
T ss_dssp EEECSCTT
T ss_pred EEECCCCC
Confidence 99888764
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.69 Score=49.93 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=70.2
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+. .++.|.+ ..+.+++ +.|.|+++.+.+.+. +..-.+.| -++.|++ .+.|+
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~--~~~ll~~---~~vD~ 71 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQ---------MQDIRIVAACDSDLERARRVHRFISDIPVLDN--VPAMLNQ---VPLDA 71 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHT---------CTTEEEEEEECSSHHHHGGGGGTSCSCCEESS--HHHHHHH---SCCSE
T ss_pred ceEEEECCCHHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHHhcCCCcccCC--HHHHhcC---CCCCE
Confidence 37999999999995 8888871 3477776 779999998887654 22333332 2445554 35699
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
|+++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 72 V~i~tp~~~-H~~~~~~al~aG--khVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 125 (359)
T 3m2t_A 72 VVMAGPPQL-HFEMGLLAMSKG--VNVFVEKPPCATLEELETLIDAARRSDVVSGVG 125 (359)
T ss_dssp EEECSCHHH-HHHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred EEEcCCcHH-HHHHHHHHHHCC--CeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999998653 344555555554 467763 3454444443 4557655443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.28 Score=50.54 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=73.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|+|.|.+|+.++..|. +.|. ++.+++.++++.+++.+. +... +. +.++++ ++++|.||.
T Consensus 110 ~vliiGaGg~a~ai~~~L~----------~~G~~~I~v~nR~~~ka~~la~~-~~~~--~~---~~~~~~-~~~aDiVIn 172 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALL----------QMGVKDIWVVNRTIERAKALDFP-VKIF--SL---DQLDEV-VKKAKSLFN 172 (253)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCCEEEEESCHHHHHTCCSS-CEEE--EG---GGHHHH-HHTCSEEEE
T ss_pred eEEEECcHHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHH-cccC--CH---HHHHhh-hcCCCEEEE
Confidence 8999999999999999998 7887 899999999998876543 2221 11 122221 457898887
Q ss_pred EeCCHH--HHHHHHHHHHHhCCCCcEEEEec-ChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCChHHH
Q 003861 612 MYTDKK--RTIEAVQRLRLAFPAIPIYARAQ-DMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 612 ~~~~d~--~n~~~~~~ar~l~p~~~iiara~-~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~~~~ 682 (791)
+++... ....+ ....+.++.-++--+. .....+..++.|+.+++.-....-.+-+...--..|.+|+..
T Consensus 173 atp~gm~p~~~~i--~~~~l~~~~~V~Divy~~T~ll~~A~~~G~~~~~~Gl~MLv~Qa~~af~~wtg~~~~~~ 244 (253)
T 3u62_A 173 TTSVGMKGEELPV--SDDSLKNLSLVYDVIYFDTPLVVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVF 244 (253)
T ss_dssp CSSTTTTSCCCSC--CHHHHTTCSEEEECSSSCCHHHHHHHHHTCSEEECTHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCCCCCCCCCCCC--CHHHhCcCCEEEEeeCCCcHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 775310 00000 1112344433333233 334445566779874444332222222223333346666543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.23 Score=51.56 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c-CCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~-~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ . ...++.+|.+|++.++++
T Consensus 30 k~vlVTGas~gIG~aia~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLL----------EAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQAL 99 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHH
Confidence 35777776 789999999998 889999999999987655432 1 355677999999876653
Q ss_pred --CCCCCcEEEEEeC
Q 003861 602 --GITSPKAVMIMYT 614 (791)
Q Consensus 602 --gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 100 ~~~~g~iD~lvnnAg 114 (276)
T 2b4q_A 100 GELSARLDILVNNAG 114 (276)
T ss_dssp HHHCSCCSEEEECCC
T ss_pred HHhcCCCCEEEECCC
Confidence 1246787776553
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.26 Score=51.32 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=51.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhh--HHHHHhcCCCEEEccCCCHHHHHhcCCC----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGIT---- 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~--v~~~~~~~~~~v~GD~t~~~~L~~agi~---- 604 (791)
+++|.|. |.+|+.+++.|. +.| ++|++++.+++. .+... +.. +.+|.+|++.++++--+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~----------~~g~~~V~~~~r~~~~~~~~~~~--~~~-~~~d~~~~~~~~~~~~~~~~~ 67 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALN----------DKGITDILVVDNLKDGTKFVNLV--DLN-IADYMDKEDFLIQIMAGEEFG 67 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHH----------TTTCCCEEEEECCSSGGGGHHHH--TSC-CSEEEEHHHHHHHHHTTCCCS
T ss_pred CEEEEcCccHHHHHHHHHHH----------HCCCcEEEEEccCCCCchhhhcC--cce-eccccccHHHHHHHHhccccC
Confidence 3678887 999999999998 788 999999987654 22232 333 77999999988876322
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
++|+||-+..
T Consensus 68 ~~d~vi~~a~ 77 (310)
T 1eq2_A 68 DVEAIFHEGA 77 (310)
T ss_dssp SCCEEEECCS
T ss_pred CCcEEEECcc
Confidence 6898877653
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.26 Score=53.58 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.++ ..|.+|++.|.+++. +.+.+.|... .+.+.+ ++++|.|+
T Consensus 176 gktvGIIGlG~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~-----~~l~el----l~~aDvV~ 235 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLS----------GFRARIRVFDPWLPR-SMLEENGVEP-----ASLEDV----LTKSDFIF 235 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHT----------TSCCEEEEECSSSCH-HHHHHTTCEE-----CCHHHH----HHSCSEEE
T ss_pred CCEEEEecCCcccHHHHHhhh----------hCCCEEEEECCCCCH-HHHhhcCeee-----CCHHHH----HhcCCEEE
Confidence 347999999999999999998 899999999988633 3444555432 122222 25688888
Q ss_pred EEeCCHH--HHHHHHHHHHHhCCCCc
Q 003861 611 IMYTDKK--RTIEAVQRLRLAFPAIP 634 (791)
Q Consensus 611 v~~~~d~--~n~~~~~~ar~l~p~~~ 634 (791)
++.+..+ .++.-...++.+.|+..
T Consensus 236 l~~Plt~~T~~li~~~~l~~mk~gai 261 (365)
T 4hy3_A 236 VVAAVTSENKRFLGAEAFSSMRRGAA 261 (365)
T ss_dssp ECSCSSCC---CCCHHHHHTSCTTCE
T ss_pred EcCcCCHHHHhhcCHHHHhcCCCCcE
Confidence 7766542 22222344445555533
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=90.49 E-value=0.12 Score=55.19 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=46.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.+++..+ +.....+. +.|+++ ++++|.|+
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~----------~~G~~V~~~dr~~~~~~-----~~~~~~~~----~~l~el-l~~aDiV~ 198 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQ----------AWGFPLRCWSRSRKSWP-----GVESYVGR----EELRAF-LNQTRVLI 198 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHH----------TTTCCEEEEESSCCCCT-----TCEEEESH----HHHHHH-HHTCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCchhhh-----hhhhhccc----CCHHHH-HhhCCEEE
Confidence 457999999999999999998 89999999998876432 22222221 223322 34677777
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++.+..
T Consensus 199 l~~Plt 204 (315)
T 3pp8_A 199 NLLPNT 204 (315)
T ss_dssp ECCCCC
T ss_pred EecCCc
Confidence 776643
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.64 Score=51.68 Aligned_cols=110 Identities=16% Similarity=0.062 Sum_probs=68.5
Q ss_pred CCEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcE-EEEcCChhhHHHHHh-cCCCE----EEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRK-LGFPI----LYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~v-vvID~d~~~v~~~~~-~~~~~----v~GD~t~~~~L~~agi~ 604 (791)
-++.|+|+|++|+ ..++.|.+ ..+.++ .+.|.|+++.+.+.+ .+... .+.| -++.+++ .
T Consensus 84 irigiIG~G~~g~~~~~~~l~~---------~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~--~~~ll~~---~ 149 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAG---------CQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN--FDKIAKD---P 149 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTT---------CSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSS--GGGGGGC---T
T ss_pred eEEEEECCcHHHHHHHHHHHhh---------CCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCC--HHHHhcC---C
Confidence 3699999999997 89999861 345665 478999998877654 45431 2222 2233432 4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+.|+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 150 ~vD~V~iatp~~~h-~~~~~~al~aG--k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 207 (433)
T 1h6d_A 150 KIDAVYIILPNSLH-AEFAIRAFKAG--KHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 207 (433)
T ss_dssp TCCEEEECSCGGGH-HHHHHHHHHTT--CEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCEEEEcCCchhH-HHHHHHHHHCC--CcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 78999999987543 44444554544 367763 3344444333 4557765553
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.062 Score=55.23 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=53.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|.|. |.+|+.+++.|. +.|++|++++.+++.. ...+..++.+|.+|++.++++ ++++|+||-
T Consensus 4 ~ilVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~---~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~ 69 (267)
T 3ay3_A 4 RLLVTGAAGGVGSAIRPHLG----------TLAHEVRLSDIVDLGA---AEAHEEIVACDLADAQAVHDL-VKDCDGIIH 69 (267)
T ss_dssp EEEEESTTSHHHHHHGGGGG----------GTEEEEEECCSSCCCC---CCTTEEECCCCTTCHHHHHHH-HTTCSEEEE
T ss_pred eEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCCCccc---cCCCccEEEccCCCHHHHHHH-HcCCCEEEE
Confidence 5888887 999999999998 7899999999887631 113567888999999988775 456898887
Q ss_pred Ee
Q 003861 612 MY 613 (791)
Q Consensus 612 ~~ 613 (791)
+.
T Consensus 70 ~a 71 (267)
T 3ay3_A 70 LG 71 (267)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.45 E-value=0.34 Score=49.68 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+++.+ . ...++.+|.+|++.++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLA----------EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 45777775 789999999998 889999999999887655432 2 355788999999876543
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 78 ~~~~~g~id~lv~nA 92 (262)
T 1zem_A 78 VVRDFGKIDFLFNNA 92 (262)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 123678776644
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.27 Score=51.66 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c-----CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L-----GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~-----~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ . ...++.+|.+|++.++++
T Consensus 27 k~vlVTGas~gIG~aia~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~ 96 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFA----------KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDI 96 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHH
Confidence 35677765 689999999998 889999999999987655432 2 356788999999877654
Q ss_pred C------CCCCcEEEEEe
Q 003861 602 G------ITSPKAVMIMY 613 (791)
Q Consensus 602 g------i~~a~~viv~~ 613 (791)
= ..+.|.+|-..
T Consensus 97 ~~~~~~~~g~iD~lvnnA 114 (297)
T 1xhl_A 97 INTTLAKFGKIDILVNNA 114 (297)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHhcCCCCEEEECC
Confidence 1 23677776654
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.72 Score=41.66 Aligned_cols=99 Identities=12% Similarity=-0.077 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCChhhHHHHH----hc-CCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcE
Q 003861 562 TVGWPFVAFDLNPSVVKESR----KL-GFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~~----~~-~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~i 635 (791)
....+++++|.|+...+.++ +. ++.++.--.+-.+.++.+.-...|.+++-..-+ ......+..+|+.++..+|
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 44577999999998755443 33 555443222334455555446789887775432 3456778888887777777
Q ss_pred EEEecChhhHHHHHHCCCCeEEcCc
Q 003861 636 YARAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 636 iara~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
++-..+.+......+.|++.++.-.
T Consensus 87 i~~s~~~~~~~~~~~~g~~~~l~KP 111 (143)
T 2qv0_A 87 VFITAWKEHAVEAFELEAFDYILKP 111 (143)
T ss_dssp EEEESCCTTHHHHHHTTCSEEEESS
T ss_pred EEEeCCHHHHHHHHhCCcceEEeCC
Confidence 7777767777788899999876543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.28 Score=50.72 Aligned_cols=73 Identities=7% Similarity=0.007 Sum_probs=56.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+++.+ .....+.+|.+|++.++++=
T Consensus 6 k~vlVTGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAV----------AAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLA 75 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 46778776 789999999998 899999999999988776653 34678899999998776541
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 76 ~~g~id~lv~~Ag 88 (281)
T 3m1a_A 76 RYGRVDVLVNNAG 88 (281)
T ss_dssp HHSCCSEEEECCC
T ss_pred hCCCCCEEEECCC
Confidence 125677766543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.5 Score=49.21 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCCE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c--CCCEEEccCCCHHHHHhc---
Q 003861 530 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 530 ~~~~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~--~~~~v~GD~t~~~~L~~a--- 601 (791)
.++++ +|-|. +-+|+.+|+.|. ++|.+|++.|.+++..++..+ . ....+.+|.+|++..+++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la----------~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFV----------AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHH
Confidence 45554 55565 469999999998 899999999999998876643 2 356778999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+-|.+|-..
T Consensus 97 ~~~~~G~iDiLVNNA 111 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNA 111 (273)
T ss_dssp HHHHHSCEEEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 223567665544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.38 E-value=0.26 Score=50.89 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=53.6
Q ss_pred cCCCCEEEe-CC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----HhcC--CCEEEccCCCHHHHHh
Q 003861 529 EGSEPVVIV-GF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~~viI~-G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~~~--~~~v~GD~t~~~~L~~ 600 (791)
+.+++++++ |. +-+|+.+++.|. ++|.+|++.|.|++..++. ++.+ ...+.+|.+|++..++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la----------~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~ 75 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLA----------AAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEA 75 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 356665544 54 679999999998 8999999999999875543 3444 4456789999887754
Q ss_pred c------CCCCCcEEEEEe
Q 003861 601 A------GITSPKAVMIMY 613 (791)
Q Consensus 601 a------gi~~a~~viv~~ 613 (791)
+ ...+-|.+|-..
T Consensus 76 ~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 76 AFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHHHCCCCcEEEECC
Confidence 2 344677666543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.37 E-value=0.26 Score=52.25 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=53.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh--h---hHHHHHhc-CCCEEEccCCCHHHHHhcCCC-
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--S---VVKESRKL-GFPILYGDASRPAVLLSAGIT- 604 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~--~---~v~~~~~~-~~~~v~GD~t~~~~L~~agi~- 604 (791)
+++|.| .|-+|+.+++.|. +.|++|+++|.+. . ..+.+.+. ...++.+|.+|++.++++ ++
T Consensus 3 ~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~-~~~ 71 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFAL----------SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRL-ITK 71 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHH-HHH
T ss_pred EEEEeCCCchhHHHHHHHHH----------hCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHH-Hhc
Confidence 578888 5999999999998 7899999998642 1 23334333 378899999999988765 22
Q ss_pred -CCcEEEEEeC
Q 003861 605 -SPKAVMIMYT 614 (791)
Q Consensus 605 -~a~~viv~~~ 614 (791)
++|+||-+..
T Consensus 72 ~~~d~vih~A~ 82 (347)
T 1orr_A 72 YMPDSCFHLAG 82 (347)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 4888876654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.37 E-value=0.31 Score=50.28 Aligned_cols=72 Identities=18% Similarity=0.095 Sum_probs=52.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----hcC--CCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLG--FPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----~~~--~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+... +.+ ...+.+|.+|++.++++=
T Consensus 22 k~~lVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLA----------EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 35677765 789999999998 88999999999988765442 123 456789999998776531
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 92 ~~~~~~g~iD~lvnnA 107 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAA 107 (267)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 23678777554
|
| >2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.046 Score=37.77 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhhhccHHHHHHHHHhcCC
Q 003861 238 SIDEAVVIGAALSLSSSAFVLQLLAEKGE 266 (791)
Q Consensus 238 ~~~~alllga~ls~TS~avv~~lL~e~~~ 266 (791)
+|..++++|+++|+|+|..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45568899999999999999999999885
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.17 Score=53.03 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=50.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCC--CCcE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT--SPKA 608 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~--~a~~ 608 (791)
+++|.|. |-+|+.+++.|. +.|++|+++|.+++ ..+.+ ..+..++.+|.+|++.++++ ++ .+|.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~ 69 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLL----------ARGLEVAVLDNLATGKRENV-PKGVPFFRVDLRDKEGVERA-FREFRPTH 69 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TTTCEEEEECCCSSCCGGGS-CTTCCEECCCTTCHHHHHHH-HHHHCCSE
T ss_pred EEEEEeCCcHHHHHHHHHHH----------HCCCEEEEEECCCcCchhhc-ccCeEEEECCCCCHHHHHHH-HHhcCCCE
Confidence 4788886 999999999998 88999999997432 21111 13678899999999887764 12 5777
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
++-+.
T Consensus 70 vi~~a 74 (311)
T 2p5y_A 70 VSHQA 74 (311)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 77654
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.33 E-value=1 Score=41.18 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccC-CCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcE
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDA-SRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~-t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~i 635 (791)
..+.+|+++|.|+...+.+ ++.+...+..-+ +-.+.++.+.-.+.|.+++-..- +......+..+|+.+|+++|
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 4556678888777654443 334533222222 22344554444568887776543 34567788899999999887
Q ss_pred EEEecCh--hhHHHHHHCCCCeEEcCc
Q 003861 636 YARAQDM--MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 636 iara~~~--~~~~~L~~~Gad~Vi~p~ 660 (791)
++-..+. +......++|++..+.-.
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~Kp 119 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLLKD 119 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETT
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEecC
Confidence 7766544 445567889999877654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.32 Score=50.56 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.++++|+|.|..|+.++..|. +.|.++++++.++++.+++.+.+..+. +..+ +.++|.||
T Consensus 118 ~k~vlvlGaGGaaraia~~L~----------~~G~~v~V~nRt~~ka~~la~~~~~~~--~~~~--------l~~~DiVI 177 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELK----------KQGLQVSVLNRSSRGLDFFQRLGCDCF--MEPP--------KSAFDLII 177 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCTTHHHHHHHTCEEE--SSCC--------SSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEe--cHHH--------hccCCEEE
Confidence 568999999999999999998 788999999999999888775554332 2221 22899888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
-+|+.
T Consensus 178 naTp~ 182 (269)
T 3phh_A 178 NATSA 182 (269)
T ss_dssp ECCTT
T ss_pred EcccC
Confidence 77764
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.33 E-value=0.41 Score=49.65 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++=
T Consensus 28 k~vlVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFA----------KNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTA 97 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 35666665 689999999998 899999999999998776644 23567889999998776531
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 98 ~~g~iD~lv~nAg 110 (277)
T 4dqx_A 98 KWGRVDVLVNNAG 110 (277)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136777776544
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.35 Score=50.81 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=55.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+ . ...++.+|.+|++.++++=
T Consensus 32 k~vlVTGas~gIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFA----------RRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45778887 678999999998 899999999999988665532 2 4567889999998876541
Q ss_pred ----CCCCcEEEEEeC
Q 003861 603 ----ITSPKAVMIMYT 614 (791)
Q Consensus 603 ----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 102 ~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHSSCSEEEECCC
T ss_pred HHHhCCCCCEEEECCC
Confidence 136787776644
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.34 Score=49.48 Aligned_cols=72 Identities=10% Similarity=-0.025 Sum_probs=52.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. +.+ ...+.+|.+|++.++++
T Consensus 15 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLA----------QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAM 84 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 45777775 789999999998 88999999999988765432 223 45678999999876653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 85 ~~~~~g~iD~lv~~A 99 (260)
T 2zat_A 85 AVNLHGGVDILVSNA 99 (260)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 113677776543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=90.27 E-value=0.1 Score=58.78 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC--CCcEEEEcCChhhHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKL 583 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~--g~~vvvID~d~~~v~~~~~~ 583 (791)
.++.|+|.|.+|..++..|. +. |++|+++|.|+++++.+.+.
T Consensus 6 mkI~VIG~G~mG~~lA~~La----------~~g~G~~V~~~d~~~~~~~~l~~g 49 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIA----------HMCPEIRVTVVDVNESRINAWNSP 49 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HHCTTSEEEEECSCHHHHHHHTSS
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEECCHHHHHHHhCC
Confidence 36999999999999999998 66 89999999999999987653
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=90.26 E-value=1 Score=41.34 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=64.1
Q ss_pred CCcEEEEcCChhhHHHHH----h-cCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEE
Q 003861 564 GWPFVAFDLNPSVVKESR----K-LGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~~----~-~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iia 637 (791)
..+++++|.|+...+.++ + .|+.++..-.+-.+.++.+.-...|.+++-..- +......+..+|+.+|++++++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 457888888887655443 3 355554222233556666655678988776543 2345678889999999889777
Q ss_pred EecC--hhhHHHHHHCCCCeEEcC
Q 003861 638 RAQD--MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 638 ra~~--~~~~~~L~~~Gad~Vi~p 659 (791)
-..+ .+......+.|++..+.-
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~k 108 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTK 108 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEET
T ss_pred EECCCCHHHHHHHHHCCCcEEEec
Confidence 6654 455667788999987654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.38 Score=48.89 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHH-HHhcC--CCEEEccCCCHHHHHhc-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKE-SRKLG--FPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~-~~~~~--~~~v~GD~t~~~~L~~a----- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.++ +..++ +++.+ ...+.+|.+|++.++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFA----------VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVI 77 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 35777775 789999999998 8899999999998 66543 33333 55688999999987764
Q ss_pred -CCCCCcEEEEEe
Q 003861 602 -GITSPKAVMIMY 613 (791)
Q Consensus 602 -gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 78 ~~~g~id~lv~nA 90 (249)
T 2ew8_A 78 STFGRCDILVNNA 90 (249)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 124678776654
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.24 Score=49.74 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.+.+++|+|.|+.|+.+++.+.. ...|.+ +-++|.||++..+.. .+.++. + .+| +++.--+. |.
T Consensus 84 ~~~rV~IIGAG~~G~~La~~~~~--------~~~g~~iVg~~D~dp~k~g~~i-~gv~V~-~-~~d---l~eli~~~-D~ 148 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFT--------KNNNTKISMAFDINESKIGTEV-GGVPVY-N-LDD---LEQHVKDE-SV 148 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC--------------CCEEEEEESCTTTTTCEE-TTEEEE-E-GGG---HHHHCSSC-CE
T ss_pred CCCEEEEEccCHHHHHHHHHHhc--------ccCCcEEEEEEeCCHHHHHhHh-cCCeee-c-hhh---HHHHHHhC-CE
Confidence 34579999999999999995320 144665 557899999765322 244443 3 333 33322223 99
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
++++++++... .++..+.+.+
T Consensus 149 ViIAvPs~~~~-ei~~~l~~aG 169 (215)
T 2vt3_A 149 AILTVPAVAAQ-SITDRLVALG 169 (215)
T ss_dssp EEECSCHHHHH-HHHHHHHHTT
T ss_pred EEEecCchhHH-HHHHHHHHcC
Confidence 99999876543 5566666654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.25 E-value=0.35 Score=49.92 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++=
T Consensus 12 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLA----------RAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTID 81 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 35677776 779999999998 899999999999988766543 35778899999998776541
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 82 ~~g~id~lv~nA 93 (271)
T 3tzq_B 82 TFGRLDIVDNNA 93 (271)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 12567776543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.37 Score=50.17 Aligned_cols=115 Identities=11% Similarity=-0.061 Sum_probs=68.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc-CC-CEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GF-PILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~-~~-~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|+|.|..|+.++..|. +.|. ++++++.++++.+++.+. +. .+...+.. -+.+ .++|
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~----------~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~---~l~~---~~~D 183 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFL----------QAGPSELVIANRDMAKALALRNELDHSRLRISRYE---ALEG---QSFD 183 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG---GGTT---CCCS
T ss_pred CCEEEEECccHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH---Hhcc---cCCC
Confidence 457999999999999999998 7895 899999999998877543 21 12222221 1221 7899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH---HHHHHCCCCeEEcCcH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL---LDLKKAGATDAILENA 661 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~---~~L~~~Gad~Vi~p~~ 661 (791)
.||-+|+.....-........+.++..++=-+.++... +..++.|+..++.-..
T Consensus 184 ivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~~~~~Gl~ 240 (272)
T 3pwz_A 184 IVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTPFLRLAREQGQARLADGVG 240 (272)
T ss_dssp EEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCHHHHHHHHHSCCEEECTHH
T ss_pred EEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCHHHHHHHHCCCCEEECCHH
Confidence 88888764321000000011233443333334454433 4456779876766554
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.46 Score=48.81 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----c---CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----L---GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~---~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. +-+|+.+++.|. ++|++|+++|.+++..++..+ . ....+.+|.+|++..+++
T Consensus 9 k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLL----------EAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFA 78 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHH
Confidence 35677775 679999999998 889999999999987655432 1 256778999999876643
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 79 EACERTLGCASILVNNAG 96 (265)
T ss_dssp HHHHHHHCSCSEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1235677766543
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=90.17 E-value=0.11 Score=55.14 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=53.1
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCC-CCcEEEEcCChhhHHHHH-hcCCCEEEccCCCH-HHHHhcCCCCCcE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESR-KLGFPILYGDASRP-AVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~-g~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~-~~L~~agi~~a~~ 608 (791)
+++|.|. |.+|+.+++.|. +. |++|++++.+++..+.+. ..+..++.||.+|+ +.++++ ++++|+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~----------~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~d~ 70 (345)
T 2bll_A 2 RVLILGVNGFIGNHLTERLL----------REDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH-VKKCDV 70 (345)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHH-HHHCSE
T ss_pred eEEEECCCcHHHHHHHHHHH----------HhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhh-ccCCCE
Confidence 5788887 999999999998 66 899999999887755443 34678899999984 455543 246788
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
||-+.
T Consensus 71 vih~A 75 (345)
T 2bll_A 71 VLPLV 75 (345)
T ss_dssp EEECB
T ss_pred EEEcc
Confidence 87643
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.37 Score=49.10 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..+++.+ .....+.+|.+|++.++++=
T Consensus 10 k~vlITGas~gIG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFA----------KGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALS 79 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46788887 568999999998 889999999999998777653 24678889999998766431
Q ss_pred -CCCCcEEEEEe
Q 003861 603 -ITSPKAVMIMY 613 (791)
Q Consensus 603 -i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 80 ~~g~id~li~~A 91 (261)
T 3n74_A 80 KFGKVDILVNNA 91 (261)
T ss_dssp HHSCCCEEEECC
T ss_pred hcCCCCEEEECC
Confidence 12567776654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.11 E-value=0.5 Score=50.67 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=68.6
Q ss_pred CEEEeCCChhHHH-HHH-HhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQV-LAN-LLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~-~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+|.+|+. .++ .+. ...+.+++ +.|.|+++.+...+....-.+.|. ++.|++ .+.|+|
T Consensus 4 rvgiiG~G~~g~~~~~~~~~~---------~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~--~~ll~~---~~~D~V 69 (345)
T 3f4l_A 4 NCAFIGFGKSTTRYHLPYVLN---------RKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDL--DEVLND---PDVKLV 69 (345)
T ss_dssp EEEEECCSHHHHHHTHHHHTT---------CTTTEEEEEEECSSCCGGGGSGGGTTCEEESCT--HHHHTC---TTEEEE
T ss_pred EEEEEecCHHHHHHHHHHHHh---------cCCCeEEEEEEcCCHhHHHHHHhcCCCceECCH--HHHhcC---CCCCEE
Confidence 6899999999996 555 444 14577777 789998876554444323344332 344442 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 70 ~i~tp~~~h-~~~~~~al~aG--k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~ 123 (345)
T 3f4l_A 70 VVCTHADSH-FEYAKRALEAG--KNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQ 123 (345)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEcCChHHH-HHHHHHHHHcC--CcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 999987643 44455555544 467774 4565555544 55677665543
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.044 Score=57.72 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=59.4
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC--EEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~--~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++.|+|.|.+|..++..|. +.|++|++++.+++.++..++.|.. .+..| . .++-.+.+|.|
T Consensus 3 mkI~iiGaGa~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~--~----~~~~~~~~D~v 66 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQ----------QSLPHTTLIGRHAKTITYYTVPHAPAQDIVVK--G----YEDVTNTFDVI 66 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HHCTTCEEEESSCEEEEEESSTTSCCEEEEEE--E----GGGCCSCEEEE
T ss_pred cEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeccCcEEEEecCCeeccceecC--c----hHhcCCCCCEE
Confidence 47999999999999999998 7899999999997654322222211 11111 1 11112689999
Q ss_pred EEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecChhhHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQDMMHLL 646 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~~~~~~ 646 (791)
++++.... .-.+...++.. .++..|+.-++--++.+
T Consensus 67 ilavk~~~-~~~~l~~l~~~l~~~~~iv~~~nGi~~~~ 103 (294)
T 3g17_A 67 IIAVKTHQ-LDAVIPHLTYLAHEDTLIILAQNGYGQLE 103 (294)
T ss_dssp EECSCGGG-HHHHGGGHHHHEEEEEEEEECCSSCCCGG
T ss_pred EEeCCccC-HHHHHHHHHHhhCCCCEEEEeccCcccHh
Confidence 99987643 22333344443 44444555555444433
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.31 Score=49.89 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=54.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a--g 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+.+.+ . ....+.+|.+|++.++++ .
T Consensus 6 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLC----------KAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQ 75 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHH
Confidence 35677765 689999999998 889999999999887655432 2 356788999999876653 1
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 76 ~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 76 VDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHTTCCCEEEECC
T ss_pred HHHhcCCCceEEEECC
Confidence 45678887665
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.05 E-value=0.38 Score=49.66 Aligned_cols=72 Identities=10% Similarity=-0.022 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. +. ....+.+|.+|++.++++=
T Consensus 22 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 91 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELA----------GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQT 91 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 45777775 789999999998 88999999999988765542 22 3567889999998776531
Q ss_pred ----C-CCCcEEEEEe
Q 003861 603 ----I-TSPKAVMIMY 613 (791)
Q Consensus 603 ----i-~~a~~viv~~ 613 (791)
. .+.|.+|-..
T Consensus 92 ~~~~~~g~id~lv~nA 107 (273)
T 1ae1_A 92 VAHVFDGKLNILVNNA 107 (273)
T ss_dssp HHHHTTSCCCEEEECC
T ss_pred HHHHcCCCCcEEEECC
Confidence 2 4678776654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.01 E-value=0.29 Score=50.54 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---------cCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---------~~~~~v~GD~t~~~~L~~a 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++..+ ....++.+|.+|++.++++
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 76 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFA----------REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEI 76 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHH
Confidence 35777776 789999999998 789999999999987665432 1256788999999877654
Q ss_pred C------CCCCcEEEEEe
Q 003861 602 G------ITSPKAVMIMY 613 (791)
Q Consensus 602 g------i~~a~~viv~~ 613 (791)
= ..+.|.+|-..
T Consensus 77 ~~~~~~~~g~id~lv~~A 94 (278)
T 1spx_A 77 LSTTLGKFGKLDILVNNA 94 (278)
T ss_dssp HHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 1 12667776544
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
Probab=89.97 E-value=1.2 Score=39.90 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCcEE
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP-AIPIY 636 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p-~~~ii 636 (791)
..+..++++|.|+...+.+ ++.|+.+...+ +-.+.++.+.-...|.++ .++ ......+..+|+. + +++++
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~dlvi--~~~-~~g~~~~~~l~~~-~~~~~ii 90 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTE-SLEDGEYLMDIRNYDLVM--VSD-KNALSFVSRIKEK-HSSIVVL 90 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEES-CHHHHHHHHHHSCCSEEE--ECS-TTHHHHHHHHHHH-STTSEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeC-CHHHHHHHHHcCCCCEEE--EcC-ccHHHHHHHHHhc-CCCccEE
Confidence 3455566666666553332 23455544322 223344443335678776 333 3456778888888 7 88877
Q ss_pred EEecC--hhhHHHHHHCCCCeEEcCc
Q 003861 637 ARAQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 637 ara~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
+-... .+......+.|++.++.-.
T Consensus 91 ~ls~~~~~~~~~~~~~~g~~~~l~kP 116 (137)
T 2pln_A 91 VSSDNPTSEEEVHAFEQGADDYIAKP 116 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEeCCCCHHHHHHHHHcCCceeeeCC
Confidence 76654 4566777889999877644
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.29 Score=55.23 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=37.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC-CC-cEEEEcCChh----hHHHHHh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GW-PFVAFDLNPS----VVKESRK 582 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~-g~-~vvvID~d~~----~v~~~~~ 582 (791)
.++.|+|.|.+|..+|..|. +. |+ +|+++|.|++ +++.+.+
T Consensus 19 mkIaVIGlG~mG~~lA~~la----------~~~G~~~V~~~D~~~~~~~~kv~~l~~ 65 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFA----------DAPCFEKVLGFQRNSKSSGYKIEMLNR 65 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHH----------HSTTCCEEEEECCCCTTTTTHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHH----------HhCCCCeEEEEECChhHhHHHHHHHHh
Confidence 47999999999999999998 78 99 9999999999 9988875
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.96 E-value=0.38 Score=50.26 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=54.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----------cCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----------~~~~~v~GD~t~~~~L~ 599 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+...+ ....++.+|.+|++.++
T Consensus 19 k~vlVTGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~ 88 (303)
T 1yxm_A 19 QVAIVTGGATGIGKAIVKELL----------ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVN 88 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHH
Confidence 45777765 789999999998 889999999999887654432 23567889999998877
Q ss_pred hcC------CCCCcEEEEEeC
Q 003861 600 SAG------ITSPKAVMIMYT 614 (791)
Q Consensus 600 ~ag------i~~a~~viv~~~ 614 (791)
++= ..+.|.+|-+.+
T Consensus 89 ~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 89 NLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 641 136788876654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=89.95 E-value=0.42 Score=48.99 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCC-CEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHH
Q 003861 530 GSE-PVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~-~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L 598 (791)
.++ .++|-|.+ -+|+.+|+.|. ++|.+|++.|.+++..+++.+ .....+.+|.+|++..
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la----------~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 73 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLD----------QLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEV 73 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHH
Confidence 344 46677853 59999999998 899999999999877655432 1356788999998766
Q ss_pred Hhc------CCCCCcEEEEE
Q 003861 599 LSA------GITSPKAVMIM 612 (791)
Q Consensus 599 ~~a------gi~~a~~viv~ 612 (791)
+++ ...+.|.+|-.
T Consensus 74 ~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 74 INGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp HHHHHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEec
Confidence 542 23467777644
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.45 Score=49.85 Aligned_cols=72 Identities=15% Similarity=-0.001 Sum_probs=53.8
Q ss_pred CCEEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h-cCCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K-LGFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~-~~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|.+ .+|+.+++.|. ++|++|+++|.+++..+.+. + ....++.+|.+|++.++++=
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVC----------AQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Confidence 458888986 89999999998 89999999999976543332 1 23568899999998776541
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 101 ~~~~~~g~iD~lVnnA 116 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAV 116 (296)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 13678777654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.38 Score=53.04 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=53.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---HHHH---------------HhcCCCEEEccC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKES---------------RKLGFPILYGDA 592 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---v~~~---------------~~~~~~~v~GD~ 592 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+++. .+++ ...+..++.||.
T Consensus 70 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl 139 (427)
T 4f6c_A 70 GNTLLTGATGFLGAYLIEALQ----------GYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDF 139 (427)
T ss_dssp EEEEEECTTSHHHHHHHHHHT----------TTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC
T ss_pred CEEEEecCCcHHHHHHHHHHH----------cCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCC
Confidence 47899996 999999999997 889999999988772 2221 125788999999
Q ss_pred CCHHHHHhcCCCCCcEEEEEeC
Q 003861 593 SRPAVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 593 t~~~~L~~agi~~a~~viv~~~ 614 (791)
+|++.++ ...++|+||-+..
T Consensus 140 ~d~~~l~--~~~~~d~Vih~A~ 159 (427)
T 4f6c_A 140 ECMDDVV--LPENMDTIIHAGA 159 (427)
T ss_dssp ---CCCC--CSSCCSEEEECCC
T ss_pred CCcccCC--CcCCCCEEEECCc
Confidence 9988888 6678998886543
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.19 Score=52.76 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=50.5
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-Chhh---HHHHHh-----cCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSV---VKESRK-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~---v~~~~~-----~~~~~v~GD~t~~~~L~~a 601 (791)
++++|.| .|-+|+.+++.|. +.|++|++++. +++. .+.+.+ .+..++.||.+|++.++++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 71 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLL----------ENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAA 71 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHH
T ss_pred CEEEEECChhHHHHHHHHHHH----------HCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHH
Confidence 3578888 4999999999998 78999999887 6532 222211 1356788999999988765
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
++++|+||-+.
T Consensus 72 -~~~~d~vih~A 82 (322)
T 2p4h_X 72 -IEGCVGIFHTA 82 (322)
T ss_dssp -HTTCSEEEECC
T ss_pred -HcCCCEEEEcC
Confidence 35678777654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.38 Score=50.17 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |.+|+.+++.|. +.|++|++++.+++..+...+ ....++.+|.+|++.++++
T Consensus 27 k~vlITGasggiG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~ 96 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLS----------SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 96 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHH
Confidence 35777775 789999999998 789999999999987654432 2366789999999877643
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 97 ~~~~~~g~id~li~~Ag 113 (302)
T 1w6u_A 97 ELIKVAGHPNIVINNAA 113 (302)
T ss_dssp HHHHHTCSCSEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1236687776554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.1 Score=48.47 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
=+|.|+|+|.+|+.=++.+.+ +.. ...+..+.+++ +.|.|+++.+.+. +.+.+-.+.|. ++.|++ .+.|+|
T Consensus 26 irvgiIG~G~ig~~H~~a~~~-~~~-~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~--~ell~~---~~iDaV 98 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNA-VKT-VFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADW--RALIAD---PEVDVV 98 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-HHH-HHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCH--HHHHHC---TTCCEE
T ss_pred ccEEEEcCCHHHHHHHHHHHh-hhh-hhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCH--HHHhcC---CCCcEE
Confidence 379999999999987666541 000 00012355655 5599999988765 46776666543 345553 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
+++|+++.. ...+..|-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 99 ~IatP~~~H-~~~a~~al~aG--khVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~ 152 (393)
T 4fb5_A 99 SVTTPNQFH-AEMAIAALEAG--KHVWCEKPMAPAYADAERMLATAERSGKVAALGY 152 (393)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECC
T ss_pred EECCChHHH-HHHHHHHHhcC--CeEEEccCCcccHHHHHHhhhhHHhcCCcccccc
Confidence 999998643 44455555554 467774 4455554444 56676655443
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.88 E-value=0.56 Score=48.42 Aligned_cols=71 Identities=7% Similarity=-0.023 Sum_probs=53.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a---- 601 (791)
.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++.. +. ....+.+|.+|++.++++
T Consensus 30 ~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALELA----------RRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVEST 99 (270)
T ss_dssp EEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 4666665 679999999998 89999999999998765543 22 467888999999877653
Q ss_pred --CCCCCcEEEEEe
Q 003861 602 --GITSPKAVMIMY 613 (791)
Q Consensus 602 --gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 100 ~~~~g~iD~lvnnA 113 (270)
T 3ftp_A 100 LKEFGALNVLVNNA 113 (270)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 123677777654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=0.56 Score=48.35 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=59.7
Q ss_pred CCEEEeCC--ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--------CCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGF--GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--------GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~--G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--------~~~~v~GD~t~~~~L~~a 601 (791)
.+|+=+|| |.....+++.+. ..|.+|+.||.+++.++.+++. .+.+++||..+.
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~----------~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~------ 135 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIH----------HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI------ 135 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCC----------SSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC------
T ss_pred CEEEEEeCCCCHHHHHHHHhcC----------CCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc------
Confidence 35666666 567777888775 6789999999999998887642 356788998753
Q ss_pred CCCCCcEEEEEeC----CH-HHHHHHHHHHHHhCCCCcEE
Q 003861 602 GITSPKAVMIMYT----DK-KRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 602 gi~~a~~viv~~~----~d-~~n~~~~~~ar~l~p~~~ii 636 (791)
..+++|.+++... ++ +....+....|-+.|+-..+
T Consensus 136 ~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~li 175 (261)
T 4gek_A 136 AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 175 (261)
T ss_dssp CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEE
Confidence 4578897766532 12 22233445556677765533
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.41 Score=48.89 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ . ....+.+|.+|++..+++=
T Consensus 13 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFA----------KAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 35667766 679999999998 889999999999987665432 2 3567889999998766531
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 83 ~~~~~g~id~lv~nA 97 (256)
T 3gaf_A 83 ALDQFGKITVLVNNA 97 (256)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 13667776554
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.81 E-value=1.1 Score=45.88 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=75.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|+|+|++|+.+++.+.+ ..+ +++. +|.+++. +.++++. .|. +++ . ++|++|-
T Consensus 5 kI~ViGaGrMG~~i~~~l~~---------~~~-eLva~~d~~~~~-----~~gv~v~-~dl------~~l-~-~~DVvID 60 (243)
T 3qy9_A 5 KILLIGYGAMNQRVARLAEE---------KGH-EIVGVIENTPKA-----TTPYQQY-QHI------ADV-K-GADVAID 60 (243)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------TTC-EEEEEECSSCC-------CCSCBC-SCT------TTC-T-TCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHh---------CCC-EEEEEEecCccc-----cCCCcee-CCH------HHH-h-CCCEEEE
Confidence 69999999999999999972 334 6654 7887762 2344332 222 222 2 7897764
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHCC--CCeEEcCcHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAG--ATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 687 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~G--ad~Vi~p~~~~~~~la~~~l~~l~~~~~~~~~l~~ 687 (791)
.+. .+.... .++ +..+.+++.-.. +++..+.++++. +.-++.|+.-.|..+..++++ ....++
T Consensus 61 ft~-p~a~~~---~~~-l~~g~~vVigTTG~s~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~------~aa~~l-- 127 (243)
T 3qy9_A 61 FSN-PNLLFP---LLD-EDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILA------AAVPLL-- 127 (243)
T ss_dssp CSC-HHHHHH---HHT-SCCCCCEEECCCSSHHHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHH------HHHHHT--
T ss_pred eCC-hHHHHH---HHH-HhcCCceEeCCCCCCHHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHH------HHHHhc--
Confidence 443 222222 222 444566665332 344556666552 334889998888877776665 223332
Q ss_pred HHhcccccceeeeecCC
Q 003861 688 LVRNSMEIQAQEVLSQK 704 (791)
Q Consensus 688 ~~~~~~~~~~~e~~~~~ 704 (791)
.+ -+..+.|.-.+.
T Consensus 128 --~~-~dieI~E~HH~~ 141 (243)
T 3qy9_A 128 --DD-FDIELTEAHHNK 141 (243)
T ss_dssp --TT-SEEEEEEEECTT
T ss_pred --CC-CCEEEEEcCCCC
Confidence 22 456666765443
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.4 Score=49.62 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=53.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..++.. +.+ ..++.+|.+|++.++++
T Consensus 23 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 92 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLG----------KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAA 92 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 45777765 789999999998 88999999999988765432 223 56788999999876654
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 93 ~~~~~g~iD~lv~~A 107 (277)
T 2rhc_B 93 VVERYGPVDVLVNNA 107 (277)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 124678777654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.34 Score=49.98 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=54.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..+++.+ .+ ...+.+|.+|++.++++
T Consensus 5 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 74 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELG----------VAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQA 74 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46788887 679999999998 899999999999988665532 23 45678999999877654
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 75 ~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 75 AVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 123677776654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.39 Score=49.22 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h----cCCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~----~~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++.. + .....+.+|.+|++.++++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALL----------LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTF 77 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHH
Confidence 45777776 789999999998 88999999999988755432 1 2356788999999877653
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 78 ~~~~~~~g~id~lv~~Ag 95 (267)
T 2gdz_A 78 RKVVDHFGRLDILVNNAG 95 (267)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1235787776653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.36 Score=51.29 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=56.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c----CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~----~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..+++.+ . ...++.+|.+|++.++++
T Consensus 9 k~vlVTGas~gIG~~la~~l~----------~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLL----------NQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHH
Confidence 46778876 789999999998 889999999999988665432 2 466789999999977654
Q ss_pred -----CCCCCcEEEEEeC
Q 003861 602 -----GITSPKAVMIMYT 614 (791)
Q Consensus 602 -----gi~~a~~viv~~~ 614 (791)
.....|.+|-..+
T Consensus 79 ~~~~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 79 DEVEARFGPVSILCNNAG 96 (319)
T ss_dssp HHHHHHTCCEEEEEECCC
T ss_pred HHHHHhCCCCCEEEECCC
Confidence 1246787776654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.42 Score=49.72 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--CCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ . ....+.+|.+|++..+++=
T Consensus 29 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 98 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALA----------ADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRD 98 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35677776 679999999998 899999999999988766543 2 3557889999997765431
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 99 ~~~~~g~iD~lVnnA 113 (283)
T 3v8b_A 99 LVLKFGHLDIVVANA 113 (283)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 13677776544
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=89.74 E-value=1 Score=40.15 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCC-CcEEEEEeCC-HHHHHHHHHHHHHh-CCCCcE
Q 003861 563 VGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITS-PKAVMIMYTD-KKRTIEAVQRLRLA-FPAIPI 635 (791)
Q Consensus 563 ~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~-a~~viv~~~~-d~~n~~~~~~ar~l-~p~~~i 635 (791)
....++++|.|+...+.+ ++.|+.+...+ +..+.++...-.. .|.+++-..- +......+..+|+. +|++++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGAD-GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEES-SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeC-CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 456788888888764443 34677766533 3334444433233 7877776543 34567778888887 688887
Q ss_pred EEEecC--hhhHHHHHHCCCCeEEcCc
Q 003861 636 YARAQD--MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 636 iara~~--~~~~~~L~~~Gad~Vi~p~ 660 (791)
++-..+ .+......+.|++.++.-.
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP 111 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKP 111 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESS
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCC
Confidence 776654 4456677889999876654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.52 Score=48.78 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=54.6
Q ss_pred CCEEEeCC-Ch--hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHHHHHhc--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRKL--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~--~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~~~~~~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |. +|+.+++.|. ++|++|++++.++ +..+++.+. ...++.+|.+|++.++++
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMH----------REGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHH----------HTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH----------HcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 45777775 34 9999999998 8999999999988 666666542 467889999999877653
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 97 ~~~~~g~id~li~nA 111 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSI 111 (280)
T ss_dssp HHHHCSSCCEEEECC
T ss_pred HHHHcCCCCEEEECC
Confidence 124678777654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.31 Score=49.71 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=49.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++..+++
T Consensus 8 k~~lVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLA----------QEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 35777776 678999999998 899999999999887665543 2467889999999876653
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 78 ~~g~id~lv~nA 89 (257)
T 3tpc_A 78 EFGHVHGLVNCA 89 (257)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 123677776543
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.51 Score=40.49 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=60.8
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhC--CCCcEEE
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAF--PAIPIYA 637 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~--p~~~iia 637 (791)
.+++++|.|+...+.+ ++.|+.+...+ +..+.++...-...|.+++...-+ ......+..+|+.. +++++++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLV-DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEES-CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEec-CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 3577888887764443 34567665433 334455544445678887776543 34566788888875 7788777
Q ss_pred EecChhhHHHHHHCCCCeEEcCc
Q 003861 638 RAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 638 ra~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
-....+.. ...+.|++.++...
T Consensus 81 ~~~~~~~~-~~~~~g~~~~l~kp 102 (119)
T 2j48_A 81 FLGEPPVD-PLLTAQASAILSKP 102 (119)
T ss_dssp EESSCCSS-HHHHHHCSEECSSC
T ss_pred EeCCCCch-hhhhcCHHHhccCC
Confidence 76655555 78889999876543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.33 Score=49.41 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR----KL--GFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++. +++..+++. +. ...++.+|.+|++.++++=
T Consensus 8 k~vlITGasggiG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 8 KVVVITGSSTGLGKSMAIRFA----------TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 45777765 788999999998 78999999999 777655432 22 3567889999998776541
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 78 ~~~~~~g~id~li~~A 93 (261)
T 1gee_A 78 SAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12678777654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.68 E-value=0.35 Score=49.39 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC---CcEEEEcCChhhHHHHH---h--cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESR---K--LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g---~~vvvID~d~~~v~~~~---~--~~~~~v~GD~t~~~~L~~ag 602 (791)
+.++|.|. |.+|+.+++.|. +.| ++|++++.+++..+.++ + ....++.+|.+|++.++++-
T Consensus 22 k~vlITGasggIG~~la~~L~----------~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 22 NSILITGCNRGLGLGLVKALL----------NLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp SEEEESCCSSHHHHHHHHHHH----------TSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH----------hcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHH
Confidence 35777765 789999999998 788 99999999987544332 2 24678899999998776541
Q ss_pred --C----C--CCcEEEEEeC
Q 003861 603 --I----T--SPKAVMIMYT 614 (791)
Q Consensus 603 --i----~--~a~~viv~~~ 614 (791)
+ . +.|.+|-..+
T Consensus 92 ~~~~~~~g~~~id~li~~Ag 111 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFNNAG 111 (267)
T ss_dssp HHHHHHHGGGCCSEEEECCC
T ss_pred HHHHHhcCCCCccEEEECCC
Confidence 1 1 5787776543
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.37 Score=53.31 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~v 609 (791)
.++++|+|.|..|+.+++.++ +.|++++++|.+++.... ......+..|.+|.+.+.++ .-.++|++
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~----------~~G~~v~~v~~~~~~~~~--~~ad~~~~~~~~d~~~l~~~~~~~~~d~V 86 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQ----------RLGVEVVAVDRYANAPAM--QVAHRSYVGNMMDKDFLWSVVEREKPDAI 86 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHH----------HTTCEEEEEESSTTCHHH--HHSSEEEESCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCChhh--hhcceEEECCCCCHHHHHHHHHHcCCCEE
Confidence 457999999999999999998 899999999998875321 22234667888888766653 23478888
Q ss_pred EEEeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHH-H-HHCCCC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLD-L-KKAGAT 654 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~-L-~~~Gad 654 (791)
+...++-.. ..+..+.+.+ |+...+..+.|....+. + ++.|+.
T Consensus 87 ~~~~e~~~~--~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip 135 (433)
T 2dwc_A 87 IPEIEAINL--DALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVP 135 (433)
T ss_dssp EECSSCSCH--HHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCC
T ss_pred EECcccCCH--HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCC
Confidence 776654322 2333344432 23334455566665554 4 577875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=89.66 E-value=2.1 Score=42.02 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=59.3
Q ss_pred CCEEEeCC--ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcC
Q 003861 532 EPVVIVGF--GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 532 ~~viI~G~--G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~ag 602 (791)
..++=+|+ |.++..+++.. .+.+++.+|.+++.++.+++ ....++.+|+.+.. +...
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~------------p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 108 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQN------------PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--DYFE 108 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHC------------TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG--GTSC
T ss_pred CeEEEEccCcCHHHHHHHHHC------------CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH--hhcC
Confidence 35666665 45666665543 36789999999999877754 24678899998722 1123
Q ss_pred CCCCcEEEEEeCCHH-----------HHHHHHHHHHHhCCCCcEEEEecC
Q 003861 603 ITSPKAVMIMYTDKK-----------RTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 603 i~~a~~viv~~~~d~-----------~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
-+..|.|++..++.. ..-.+....+-+.|+-.++...++
T Consensus 109 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 109 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 356898887766521 012333444556776566665544
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=89.60 E-value=0.36 Score=51.44 Aligned_cols=109 Identities=8% Similarity=-0.011 Sum_probs=67.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++.|+|+|.+|+..++.|.+ ..+.+++ +.|.|+++.+.+.+ .+.+..+.|. ++.++ -.+.|+|
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~---------~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~--~~ll~---~~~~D~V 71 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRL---------AGNGEVVAVSSRTLESAQAFANKYHLPKAYDKL--EDMLA---DESIDVI 71 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHH---------HCSEEEEEEECSCSSTTCC---CCCCSCEESCH--HHHHT---CTTCCEE
T ss_pred eEEEEEechHHHHHHHHHHHh---------CCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCH--HHHhc---CCCCCEE
Confidence 369999999999999999872 3455655 56999998766544 4554344322 33443 2578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
+++++++. -...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+
T Consensus 72 ~i~tp~~~-h~~~~~~al~aG--k~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 123 (329)
T 3evn_A 72 YVATINQD-HYKVAKAALLAG--KHVLVEKPFTLTYDQANELFALAESCNLFLME 123 (329)
T ss_dssp EECSCGGG-HHHHHHHHHHTT--CEEEEESSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred EECCCcHH-HHHHHHHHHHCC--CeEEEccCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 99998754 344455555554 467763 4455554444 556765544
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.58 E-value=0.48 Score=49.70 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=53.2
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc---
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a--- 601 (791)
.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++..+++
T Consensus 43 ~vlVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 43 SVLVTGGTKGIGRGIATVFA----------RAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp EEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 5667776 679999999998 899999999999987655432 2356788999999876543
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 113 ~~~~~g~iD~lvnnAg 128 (293)
T 3rih_A 113 VVDAFGALDVVCANAG 128 (293)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 1235677766543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=0.19 Score=53.20 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH--HHHHh----cCCCEEEccCCCHHHHHhcCCC
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRK----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v--~~~~~----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++++|.|. |-+|+.+++.|. +.|++|++++.+++.. +.+++ .+..++.+|.+|++.++++=-+
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 73 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLL----------EKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEK 73 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHh
Confidence 36889987 999999999998 7899999999887643 22222 2467788999999887764111
Q ss_pred -CCcEEEEEeC
Q 003861 605 -SPKAVMIMYT 614 (791)
Q Consensus 605 -~a~~viv~~~ 614 (791)
+.|+||-+.+
T Consensus 74 ~~~d~vih~A~ 84 (345)
T 2z1m_A 74 VQPDEVYNLAA 84 (345)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 5688876654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.58 E-value=0.39 Score=49.09 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=52.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHH----HhcC--CCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKES----RKLG--FPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~----~~~~--~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++. +++..++. ++.+ ..++.+|.+|++.++++=
T Consensus 22 k~vlItGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 22 KVALTTGAGRGIGRGIAIELG----------RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 45777776 789999999998 78999999998 77665443 2223 457889999998876541
Q ss_pred -----CCCCcEEEEEe
Q 003861 603 -----ITSPKAVMIMY 613 (791)
Q Consensus 603 -----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 92 ~~~~~~~~~d~vi~~A 107 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNS 107 (274)
T ss_dssp HHHHHHSCEEEEECCC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12677776544
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.14 Score=54.39 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH-HHHHh-cCCCEEEccCCCHHHHHhcCC-CCCc
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRK-LGFPILYGDASRPAVLLSAGI-TSPK 607 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v-~~~~~-~~~~~v~GD~t~~~~L~~agi-~~a~ 607 (791)
.+++|.| .|.+|+.+++.|. +.|++|++++.+++.. +.+.+ .+..++.+|.+|++.++++=- .++|
T Consensus 22 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D 91 (333)
T 2q1w_A 22 KKVFITGICGQIGSHIAELLL----------ERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPD 91 (333)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCc
Confidence 3688888 5999999999998 7899999999875432 11222 356789999999998876411 2488
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
+||-+..
T Consensus 92 ~vih~A~ 98 (333)
T 2q1w_A 92 AVVHTAA 98 (333)
T ss_dssp EEEECCC
T ss_pred EEEECce
Confidence 8876543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.63 Score=51.03 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=49.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCC-CCCcEEEEc---CChhhHHHH-HhcCCCEE--E--c-------c---C-
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNT-VGWPFVAFD---LNPSVVKES-RKLGFPIL--Y--G-------D---A- 592 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~-~g~~vvvID---~d~~~v~~~-~~~~~~~v--~--G-------D---~- 592 (791)
++.|+|.|.+|..++..|. + .|++|+++| .++++++.+ ++.+..+- + | . .
T Consensus 4 kI~ViGaG~~G~~~a~~La----------~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 73 (404)
T 3c7a_A 4 KVCVCGGGNGAHTLSGLAA----------SRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVIT 73 (404)
T ss_dssp EEEEECCSHHHHHHHHHHT----------TSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEE
T ss_pred eEEEECCCHHHHHHHHHHH----------hCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEe
Confidence 5899999999999999997 5 599999999 888888874 44332110 0 1 1 1
Q ss_pred CCHHHHHhcCCCCCcEEEEEeCCHH
Q 003861 593 SRPAVLLSAGITSPKAVMIMYTDKK 617 (791)
Q Consensus 593 t~~~~L~~agi~~a~~viv~~~~d~ 617 (791)
+|.+ ++ ++++|.|++++....
T Consensus 74 ~~~~---~a-~~~aD~Vilav~~~~ 94 (404)
T 3c7a_A 74 KDPE---IA-ISGADVVILTVPAFA 94 (404)
T ss_dssp SCHH---HH-HTTCSEEEECSCGGG
T ss_pred CCHH---HH-hCCCCEEEEeCchHH
Confidence 2222 11 357999999998764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=89.51 E-value=0.55 Score=47.76 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccC--CCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDA--SRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~--t~~~~L~~a 601 (791)
+.++|.|. |-+|+.+++.|. ++|.+|+++|.+++..++..+ ....++.+|. +|++..+++
T Consensus 13 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYA----------RYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHH
Confidence 45777776 678999999998 899999999999988665432 1567889999 888765543
Q ss_pred ------CCCCCcEEEEEe
Q 003861 602 ------GITSPKAVMIMY 613 (791)
Q Consensus 602 ------gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 83 ~~~~~~~~g~id~lv~nA 100 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNA 100 (252)
T ss_dssp HHHHHHHCSCCSEEEECC
T ss_pred HHHHHHhCCCCCEEEECC
Confidence 223677776554
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.16 Score=54.52 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=43.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.|+|+|.|..|..+|..|. +.|++|+++|.+++. +.+..+|++-.+.++++.++..
T Consensus 6 DViIVGaGpaGl~~A~~La----------~~G~~V~v~Er~~~~-------~~~~~~g~~l~~~~l~~l~~~~ 61 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAA----------KYGLKTLMIEKRPEI-------GSPVRCGEGLSKGILNEADIKA 61 (397)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSST-------TCSCCSCCEEETHHHHHTTCCC
T ss_pred CEEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCCCC-------CCCCceecccCHHHHHHcCCCc
Confidence 4899999999999999998 899999999987653 3333345555566777776653
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=89.48 E-value=0.53 Score=48.50 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=55.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|++.|.+++..+++.+ ....++.+|.+|++..+++-
T Consensus 28 k~vlVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 97 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFH----------AQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAER 97 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 35667765 679999999998 899999999999998776543 24667889999998776541
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 98 ~~g~iD~lvnnAg 110 (266)
T 3grp_A 98 EMEGIDILVNNAG 110 (266)
T ss_dssp HHTSCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136777766543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.39 E-value=0.38 Score=51.95 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~v 609 (791)
.++++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |.+++ +..++.. +.+|.+
T Consensus 180 g~~VlV~GaG~vG~~~~qlak----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~-~~~D~v 247 (360)
T 1piw_A 180 GKKVGIVGLGGIGSMGTLISK----------AMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYF-DTFDLI 247 (360)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSC-SCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHcCCCEEE-cCcCchHHHHHhh-cCCCEE
Confidence 457999999999999999887 7899999999999999999888876543 44444 4445444 579988
Q ss_pred EEEeCC
Q 003861 610 MIMYTD 615 (791)
Q Consensus 610 iv~~~~ 615 (791)
+-+++.
T Consensus 248 id~~g~ 253 (360)
T 1piw_A 248 VVCASS 253 (360)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 888775
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.34 Score=49.24 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++=
T Consensus 7 k~vlVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLA----------ADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45777776 679999999998 899999999999998776543 23567789999998776541
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 77 ~~g~id~lv~nAg 89 (247)
T 3rwb_A 77 LTGGIDILVNNAS 89 (247)
T ss_dssp HHSCCSEEEECCC
T ss_pred HCCCCCEEEECCC
Confidence 136787775544
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.51 Score=52.52 Aligned_cols=94 Identities=9% Similarity=-0.056 Sum_probs=60.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHh-c-C--CCEEEc---------------
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRK-L-G--FPILYG--------------- 590 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~-~-~--~~~v~G--------------- 590 (791)
+-+|.|+|+|++|+..++.+.+ ..+.+ +.+.|.|+++.+.+.+ . | ......
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~---------~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~ 93 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVAR---------MQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKI 93 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTT---------SSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCE
T ss_pred ceEEEEECChHHHHHHHHHHhh---------CCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCc
Confidence 3479999999999999998862 44555 4566999999877643 2 4 111100
Q ss_pred -cCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 591 -DASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 591 -D~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
=.+|.+.+- .-.+.|+|+++|++.+.-...+..|-+.+ .+|+.
T Consensus 94 ~v~~D~eeLL--~d~dIDaVviaTp~p~~H~e~a~~AL~AG--KHVv~ 137 (446)
T 3upl_A 94 AVTDDNDLIL--SNPLIDVIIDATGIPEVGAETGIAAIRNG--KHLVM 137 (446)
T ss_dssp EEESCHHHHH--TCTTCCEEEECSCCHHHHHHHHHHHHHTT--CEEEE
T ss_pred eEECCHHHHh--cCCCCCEEEEcCCChHHHHHHHHHHHHcC--CcEEe
Confidence 013333332 23578999999988655566677777765 35664
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.37 E-value=0.59 Score=49.91 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=57.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHH---HHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---VLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~---~L~~agi~~a~ 607 (791)
.++++|.|.|.+|+.+++.++ ..|.+|+++|.++++.+.+++.|...+. |.++++ .++++. ..+|
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-d~~~~~~~~~~~~~~-~~~d 232 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAK----------AMGLNVVAVDIGDEKLELAKELGADLVV-NPLKEDAAKFMKEKV-GGVH 232 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEE-CTTTSCHHHHHHHHH-SSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHCCCCEEe-cCCCccHHHHHHHHh-CCCC
Confidence 457999999999999999998 7899999999999999999888876543 555433 333332 5789
Q ss_pred EEEEEeCCH
Q 003861 608 AVMIMYTDK 616 (791)
Q Consensus 608 ~viv~~~~d 616 (791)
.++-+++..
T Consensus 233 ~vid~~g~~ 241 (339)
T 1rjw_A 233 AAVVTAVSK 241 (339)
T ss_dssp EEEESSCCH
T ss_pred EEEECCCCH
Confidence 888887764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=89.34 E-value=0.83 Score=49.11 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=57.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCC--C-HH----HHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDAS--R-PA----VLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t--~-~~----~L~~ag 602 (791)
.+.++|.|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. |.+ | ++ +.+..+
T Consensus 172 g~~VlV~GaG~vG~~aiqlak----------~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAK----------AMGAAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHhC
Confidence 457999999999999999887 7888 899999999999999988876443 443 2 33 233345
Q ss_pred CCCCcEEEEEeCCH
Q 003861 603 ITSPKAVMIMYTDK 616 (791)
Q Consensus 603 i~~a~~viv~~~~d 616 (791)
+.+|.++-+++..
T Consensus 241 -~g~D~vid~~g~~ 253 (356)
T 1pl8_A 241 -CKPEVTIECTGAE 253 (356)
T ss_dssp -SCCSEEEECSCCH
T ss_pred -CCCCEEEECCCCh
Confidence 6799998888764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.56 Score=48.53 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++
T Consensus 28 k~~lVTGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 97 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFM----------RHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVD 97 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 45777776 579999999998 899999999999887554321 2356788999999876543
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 98 ~~~~~~g~id~lv~nAg 114 (277)
T 4fc7_A 98 QALKEFGRIDILINCAA 114 (277)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCc
Confidence 1236787776554
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.96 Score=47.49 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCCh------------------hhHHHHH----h--cCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP------------------SVVKESR----K--LGF 585 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~------------------~~v~~~~----~--~~~ 585 (791)
+.+|+|+|.|..|..+++.|. ..|. .++++|.|. .+++.++ + .+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La----------~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v 105 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLT----------RCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDV 105 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTS
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCc
Confidence 458999999999999999998 6676 689999887 4444333 2 233
Q ss_pred --CEEEccCCCHHHHHhc-------C---CCCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 003861 586 --PILYGDASRPAVLLSA-------G---ITSPKAVMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 586 --~~v~GD~t~~~~L~~a-------g---i~~a~~viv~~~~d~~n~~~~~~ar~l~ 630 (791)
..+..+.++++.+++. . .+++|.||-++++-+.-..+-..+++.+
T Consensus 106 ~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 106 LFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred EEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhC
Confidence 3344556655544432 1 2689999888988776667777777775
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.30 E-value=0.44 Score=48.24 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-ChhhHHHHH----hc--CCCEEEccCCCHHHHHhcC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESR----KL--GFPILYGDASRPAVLLSAG- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~ag- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++. +++..+++. +. ....+.+|.+|++.++++=
T Consensus 5 k~vlVTGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLA----------KQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 35777775 789999999998 88999999998 877655432 22 3557889999998776531
Q ss_pred -----CCCCcEEEEEeC
Q 003861 603 -----ITSPKAVMIMYT 614 (791)
Q Consensus 603 -----i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 75 ~~~~~~g~id~lv~nAg 91 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAG 91 (246)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 136787776543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=89.28 E-value=0.28 Score=54.07 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=51.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHH-HHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE-SRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~-~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|.+|+.+++.|. ..|. +|+++|.++++.++ +++.|..++ +..+ +.++ +.++|.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~---l~~~-l~~aDv 230 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLV----------DRGVRAVLVANRTYERAVELARDLGGEAV--RFDE---LVDH-LARSDV 230 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHH----------HHCCSEEEEECSSHHHHHHHHHHHTCEEC--CGGG---HHHH-HHTCSE
T ss_pred CCEEEEEChHHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCcee--cHHh---HHHH-hcCCCE
Confidence 457999999999999999998 7888 89999999998744 445565432 2222 2221 257999
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
|+.+++..
T Consensus 231 Vi~at~~~ 238 (404)
T 1gpj_A 231 VVSATAAP 238 (404)
T ss_dssp EEECCSSS
T ss_pred EEEccCCC
Confidence 99998764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.27 E-value=0.24 Score=48.97 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
-.|+|+|.|..|..+|..|. +.|++|+++|.+++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La----------~~G~~V~v~Ek~~~ 36 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALT----------AAGHQVHLFDKSRG 36 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHH----------HCCCCEEEEECCCC
Confidence 35999999999999999998 89999999998764
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.27 E-value=0.47 Score=48.41 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c-CCCEEEccCCCHHHHHhc------C
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~-~~~~v~GD~t~~~~L~~a------g 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++. ++..+ . . .++.+|.+|++.++++ .
T Consensus 7 k~vlVTGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 7 KGVLVTGGARGIGRAIAQAFA----------REGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 45777776 788999999998 889999999999877 44432 1 3 7889999999876653 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 75 ~g~iD~lv~~A 85 (256)
T 2d1y_A 75 LGRVDVLVNNA 85 (256)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 23567776554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=0.31 Score=51.95 Aligned_cols=41 Identities=27% Similarity=0.524 Sum_probs=35.4
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
..++|.|+|.|.+|..+|..+. ..|++|++.|.+++..+++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a----------~~G~~V~l~D~~~~~l~~~ 45 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFA----------SGGFRVKLYDIEPRQITGA 45 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHH----------HTTCCEEEECSCHHHHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHH
Confidence 3567999999999999999998 8999999999999976554
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.24 Score=52.30 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=54.2
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-----HHHH-HhcCCCEEEccCCCHHHHHhcC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----VKES-RKLGFPILYGDASRPAVLLSAG 602 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-----v~~~-~~~~~~~v~GD~t~~~~L~~ag 602 (791)
...+++|.|. |-+|+.+++.|. +.|++|++++.+++. .+.+ ...+..++.+|.+|++.++++=
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 82 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLL----------EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAV 82 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred cCCeEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHH
Confidence 3456888876 999999999998 789999999987653 2222 1245778999999998877642
Q ss_pred CC-CCcEEEEEeC
Q 003861 603 IT-SPKAVMIMYT 614 (791)
Q Consensus 603 i~-~a~~viv~~~ 614 (791)
-+ +.|+||-+..
T Consensus 83 ~~~~~d~Vih~A~ 95 (335)
T 1rpn_A 83 IKAQPQEVYNLAA 95 (335)
T ss_dssp HHHCCSEEEECCS
T ss_pred HHcCCCEEEECcc
Confidence 11 5688876543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=89.24 E-value=1.2 Score=48.07 Aligned_cols=108 Identities=8% Similarity=0.069 Sum_probs=66.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcE-EEEcCChhhHHHHHh-cCC---CEEEccCCCHHHHHhcCCCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPF-VAFDLNPSVVKESRK-LGF---PILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~v-vvID~d~~~v~~~~~-~~~---~~v~GD~t~~~~L~~agi~~a 606 (791)
-++.|+|+|.+|+..++.|.+ ..+.++ .+.|.|+++.+.+.+ .+. ...+.| -++.+++ .++
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~---------~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~--~~~ll~~---~~~ 72 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHL---------APNATISGVASRSLEKAKAFATANNYPESTKIHGS--YESLLED---PEI 72 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESS--HHHHHHC---TTC
T ss_pred eEEEEECchHHHHHHHHHHhh---------CCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCC--HHHHhcC---CCC
Confidence 369999999999999998872 345665 477999998877654 453 233332 2344442 468
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDA 656 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~V 656 (791)
|+|+++++++.. ...+..+-+. +.+|++. +.+.+..+.+ ++.|....
T Consensus 73 D~V~i~tp~~~h-~~~~~~al~a--Gk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~ 126 (362)
T 1ydw_A 73 DALYVPLPTSLH-VEWAIKAAEK--GKHILLEKPVAMNVTEFDKIVDACEANGVQIM 126 (362)
T ss_dssp CEEEECCCGGGH-HHHHHHHHTT--TCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred CEEEEcCChHHH-HHHHHHHHHC--CCeEEEecCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 999999987543 3344444343 3467763 2344444333 44565544
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=89.23 E-value=1.3 Score=40.69 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHh--CCCCc
Q 003861 562 TVGWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLA--FPAIP 634 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l--~p~~~ 634 (791)
+++.+|.+||.|+...+. +++.|++++.-=.+-.+.++.+.-.+.|.++.-..=+ .+=..++..+|+. .++++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 567789999999987544 3467886443111224556655556889887765432 3456778888864 46778
Q ss_pred EEEEec--ChhhHHHHHHCCCCeEEcCc
Q 003861 635 IYARAQ--DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 635 iiara~--~~~~~~~L~~~Gad~Vi~p~ 660 (791)
||.-.. +.+......++||+..+.-.
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP 117 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKP 117 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESS
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECC
Confidence 666443 45566677899999876543
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=89.23 E-value=1.7 Score=39.69 Aligned_cols=96 Identities=8% Similarity=0.067 Sum_probs=57.9
Q ss_pred CCcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiar 638 (791)
...|++||.|+...+.++ +.|+.+...+ +-.+.++.+.-...|.+++-..- +..-...+..+|+.+|++++|+-
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~-~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 92 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFAR-DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILL 92 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEES-SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEEC-CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEE
Confidence 445666666665543332 3444444321 22334444444567877776543 34557788889999999998876
Q ss_pred ecCh--hhHHHHHHCC-CCeEEcCc
Q 003861 639 AQDM--MHLLDLKKAG-ATDAILEN 660 (791)
Q Consensus 639 a~~~--~~~~~L~~~G-ad~Vi~p~ 660 (791)
.... +......+.| ++..+.-.
T Consensus 93 s~~~~~~~~~~~~~~g~~~~~l~KP 117 (153)
T 3hv2_A 93 TGDPDLKLIAKAINEGEIYRYLSKP 117 (153)
T ss_dssp CCCCCHHHHHHHHHTTCCSEEECSS
T ss_pred ECCCCHHHHHHHHhCCCcceEEeCC
Confidence 6544 4555677888 88776543
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.21 E-value=0.42 Score=51.87 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=53.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+++|+|.|..|+.+++.++ +.|++++++|.+++... .......+..|.+|.+.+.+.- +++|.++..
T Consensus 3 ~Ililg~g~~g~~~~~a~~----------~~G~~v~~~~~~~~~~~--~~~~~~~~~~~~~d~~~l~~~~-~~~d~v~~~ 69 (380)
T 3ax6_A 3 KIGIIGGGQLGKMMTLEAK----------KMGFYVIVLDPTPRSPA--GQVADEQIVAGFFDSERIEDLV-KGSDVTTYD 69 (380)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSTTCTT--GGGSSEEEECCTTCHHHHHHHH-HTCSEEEES
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCch--hhhCceEEECCCCCHHHHHHHH-hcCCEEEec
Confidence 6899999999999999998 89999999999876421 1222346678899988887755 778877654
Q ss_pred eC
Q 003861 613 YT 614 (791)
Q Consensus 613 ~~ 614 (791)
.+
T Consensus 70 ~e 71 (380)
T 3ax6_A 70 LE 71 (380)
T ss_dssp CS
T ss_pred cc
Confidence 44
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=89.19 E-value=1.1 Score=39.95 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC--HHHHHHHHHHHHHhCCCCcE
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD--KKRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~--d~~n~~~~~~ar~l~p~~~i 635 (791)
....+++++|.|+...+.+ ++.|+.++.--.+-.+.++.+.-.+.|.+++-..- +......+..+|+. +++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i 85 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI 85 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence 4456788888888765443 34677765312233445554444568888877653 24556778888888 88887
Q ss_pred EEEecC--hhhHHHHHHCCCCeEEcC
Q 003861 636 YARAQD--MMHLLDLKKAGATDAILE 659 (791)
Q Consensus 636 iara~~--~~~~~~L~~~Gad~Vi~p 659 (791)
++-..+ .+......+.|++.++.-
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~k 111 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAK 111 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEE
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeC
Confidence 776654 444556778999987654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=89.18 E-value=1.1 Score=48.96 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=71.3
Q ss_pred CEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+| .+|+..++.|.+ ..+.+++ +.|.|+++.+++. +.|.++ +.| -++.|++ .+.|+|
T Consensus 4 rigiiG~G~~~~~~~~~~l~~---------~~~~~l~av~d~~~~~~~~~a~~~g~~~-~~~--~~ell~~---~~vD~V 68 (387)
T 3moi_A 4 RFGICGLGFAGSVLMAPAMRH---------HPDAQIVAACDPNEDVRERFGKEYGIPV-FAT--LAEMMQH---VQMDAV 68 (387)
T ss_dssp EEEEECCSHHHHTTHHHHHHH---------CTTEEEEEEECSCHHHHHHHHHHHTCCE-ESS--HHHHHHH---SCCSEE
T ss_pred EEEEEeCCHHHHHHHHHHHHh---------CCCeEEEEEEeCCHHHHHHHHHHcCCCe-ECC--HHHHHcC---CCCCEE
Confidence 68999999 999999998862 4466665 6799999887765 457763 332 2445554 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 69 ~i~tp~~~H-~~~~~~al~aG--k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~ 122 (387)
T 3moi_A 69 YIASPHQFH-CEHVVQASEQG--LHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGT 122 (387)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred EEcCCcHHH-HHHHHHHHHCC--CceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 999987543 44555555554 467763 4455554444 55576654443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.17 E-value=2 Score=45.42 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=80.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHH----HHh----c--CCCEEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRK----L--GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~----~~~----~--~~~~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|..++..|. ..+. +++++|.|+++.+. +.+ . ...+... +|.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~----------~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~----- 63 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLM----------MRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSYE----- 63 (308)
T ss_dssp CEEEECCSHHHHHHHHHHH----------HHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG-----
T ss_pred CEEEECcCHHHHHHHHHHH----------hCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCHH-----
Confidence 4789999999999999886 4455 69999999987543 112 1 2233321 2222
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH--HHHHH-CCC--CeEEcC-c
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AGA--TDAILE-N 660 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~~--~~L~~-~Ga--d~Vi~p-~ 660 (791)
.+++||.||++.+- | ..|.. ++..+++..|+..++. +.|+.+. ..+++ .|. ++|+-- .
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~~~t~~~~k~~~~p~~rviG~gt 142 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVI-TTNPVDAMTYVMYKKTGFPRERVIGFSG 142 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEE-CCSSHHHHHHHHHHHHCCCGGGEEECCH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHHHhcCCChhhEEEecc
Confidence 36899988888432 1 34444 3455666788877666 4555443 23333 243 367665 4
Q ss_pred HHHHHHHHHHHHhhcCCChHHH
Q 003861 661 AETSLQLGSKLLKGFGVMSDDV 682 (791)
Q Consensus 661 ~~~~~~la~~~l~~l~~~~~~~ 682 (791)
.+-..++-..+-+.+|+++..+
T Consensus 143 ~LD~~R~~~~la~~lgv~~~~v 164 (308)
T 2d4a_B 143 ILDSARMAYYISQKLGVSFKSV 164 (308)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGE
T ss_pred cchHHHHHHHHHHHhCcChhHe
Confidence 4335566666666677776543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.21 Score=52.27 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=66.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|+|.|..|+.++..|. +.|. +|++++.++++.+++.+. .... ..+.+.++ ++++|.|
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~----------~~G~~~v~v~~R~~~~a~~la~~-~~~~-----~~~~~~~~-~~~aDiV 179 (277)
T 3don_A 117 DAYILILGAGGASKGIANELY----------KIVRPTLTVANRTMSRFNNWSLN-INKI-----NLSHAESH-LDEFDII 179 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHH----------TTCCSCCEEECSCGGGGTTCCSC-CEEE-----CHHHHHHT-GGGCSEE
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHh-cccc-----cHhhHHHH-hcCCCEE
Confidence 357999999999999999998 8898 899999999987766542 2221 22334433 6789988
Q ss_pred EEEeCCHH-HHHHHHHHHHHhCCCCcEEEE-ecChh---hHHHHHHCCCCeEEcCcH
Q 003861 610 MIMYTDKK-RTIEAVQRLRLAFPAIPIYAR-AQDMM---HLLDLKKAGATDAILENA 661 (791)
Q Consensus 610 iv~~~~d~-~n~~~~~~ar~l~p~~~iiar-a~~~~---~~~~L~~~Gad~Vi~p~~ 661 (791)
|-+|+... .+.........+.|+ .++.- +.++. -.+..++.|+. ++.-..
T Consensus 180 InaTp~Gm~~~~~~~l~~~~l~~~-~~V~D~vY~P~~T~ll~~A~~~G~~-~~~Gl~ 234 (277)
T 3don_A 180 INTTPAGMNGNTDSVISLNRLASH-TLVSDIVYNPYKTPILIEAEQRGNP-IYNGLD 234 (277)
T ss_dssp EECCC-------CCSSCCTTCCSS-CEEEESCCSSSSCHHHHHHHHTTCC-EECTHH
T ss_pred EECccCCCCCCCcCCCCHHHcCCC-CEEEEecCCCCCCHHHHHHHHCcCE-EeCCHH
Confidence 87776521 111100111112333 34443 33443 33445777985 455543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.58 Score=48.53 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc------
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a------ 601 (791)
+.++|.|. +-+|+.+++.|. ++|++|+++|.+++..+++.+ .....+.+|.+|++..+++
T Consensus 6 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 6 EVALITGGASGLGRALVDRFV----------AEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35677775 679999999998 899999999999998877654 2456788999998866543
Q ss_pred CCCCCcEEEEEe
Q 003861 602 GITSPKAVMIMY 613 (791)
Q Consensus 602 gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 76 ~~g~iD~lvnnA 87 (281)
T 3zv4_A 76 AFGKIDTLIPNA 87 (281)
T ss_dssp HHSCCCEEECCC
T ss_pred hcCCCCEEEECC
Confidence 123567666554
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.36 Score=49.89 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCC-CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc
Q 003861 530 GSE-PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~-~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a 601 (791)
.++ .++|.|. |-+|+.+++.|. ++|++|+++|.+++..++.. +. ...++.+|.+|++.++++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 93 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLA----------VAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEA 93 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 444 4666666 679999999998 89999999999998765543 22 355678999999877653
Q ss_pred ------CCCCCcEEEEEeC
Q 003861 602 ------GITSPKAVMIMYT 614 (791)
Q Consensus 602 ------gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 94 ~~~~~~~~g~iD~lv~nAg 112 (271)
T 4ibo_A 94 FARLDEQGIDVDILVNNAG 112 (271)
T ss_dssp HHHHHHHTCCCCEEEECCC
T ss_pred HHHHHHHCCCCCEEEECCC
Confidence 1236787776543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=0.19 Score=53.72 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=55.6
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----hcCCCEEEccCCCHHHHHhcCCC-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLGFPILYGDASRPAVLLSAGIT- 604 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----~~~~~~v~GD~t~~~~L~~agi~- 604 (791)
.+++|.|. |.+|+.+++.|. +.|++|++++.+++..+... ..+..++.+|.+|++.++++=-+
T Consensus 10 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 10 KRVFVTGHTGFKGGWLSLWLQ----------TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc
Confidence 46888884 999999999998 78999999998876533222 23678999999999887764111
Q ss_pred CCcEEEEEeC
Q 003861 605 SPKAVMIMYT 614 (791)
Q Consensus 605 ~a~~viv~~~ 614 (791)
++|+||-+..
T Consensus 80 ~~d~vih~A~ 89 (357)
T 1rkx_A 80 QPEIVFHMAA 89 (357)
T ss_dssp CCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 4788887654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=89.04 E-value=0.6 Score=47.41 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=55.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhcC-----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAG----- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~ag----- 602 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ .....+.+|.+|++..+++=
T Consensus 10 k~~lVTGas~gIG~a~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLA----------ERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITD 79 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHH
Confidence 45777776 678999999998 899999999999988766543 23567889999998776531
Q ss_pred -CCCCcEEEEEeC
Q 003861 603 -ITSPKAVMIMYT 614 (791)
Q Consensus 603 -i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 80 ~~g~iD~lv~nAg 92 (248)
T 3op4_A 80 EFGGVDILVNNAG 92 (248)
T ss_dssp HHCCCSEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 136777766543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.03 E-value=0.62 Score=46.95 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=53.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccC--CCHHHHHhc
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDA--SRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~--t~~~~L~~a 601 (791)
+.++|.|. |.+|+.+++.|. ++|++|+++|.+++..++..+ ....++..|. +|++.++++
T Consensus 15 k~vlITGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 15 RVILVTGAARGIGAAAARAYA----------AHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYREL 84 (247)
T ss_dssp CEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHH
Confidence 45777776 789999999998 899999999999988665532 3455777777 888766543
Q ss_pred ------CCCCCcEEEEEeC
Q 003861 602 ------GITSPKAVMIMYT 614 (791)
Q Consensus 602 ------gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 85 ~~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHhCCCCCEEEECCc
Confidence 1236777776543
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.01 E-value=1.1 Score=48.23 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
-++.|+|+|.+|+. .++.+.+ ..+.+++ +.|.|+++.+ ++. +.. .+.|. ++.|++ .+.|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~---------~~~~~l~av~d~~~~~~~--~~~~~~~-~~~~~--~~ll~~---~~vD~ 70 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMG---------TPGLELAGVSSSDASKVH--ADWPAIP-VVSDP--QMLFND---PSIDL 70 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHT---------STTEEEEEEECSCHHHHH--TTCSSCC-EESCH--HHHHHC---SSCCE
T ss_pred ceEEEECCCHHHHHHHHHHHhh---------CCCcEEEEEECCCHHHHH--hhCCCCc-eECCH--HHHhcC---CCCCE
Confidence 47999999999997 7787761 3467776 6799998876 222 333 23222 334432 57899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEcC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAILE 659 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~p 659 (791)
|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+..
T Consensus 71 V~i~tp~~~H-~~~~~~al~aG--khV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~ 125 (352)
T 3kux_A 71 IVIPTPNDTH-FPLAQSALAAG--KHVVVDKPFTVTLSQANALKEHADDAGLLLSVFH 125 (352)
T ss_dssp EEECSCTTTH-HHHHHHHHHTT--CEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECC
T ss_pred EEEeCChHHH-HHHHHHHHHCC--CcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 9999987643 44445555554 467773 3444444443 55677655543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.49 Score=49.08 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc---
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a--- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++++.+++..++.. +. ....+.+|.+|++.++++
T Consensus 25 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLA----------ARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 45777776 678999999998 88999999999998765543 22 356788999999876543
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 95 ~~~~~g~id~lv~nA 109 (279)
T 3sju_A 95 AVERFGPIGILVNSA 109 (279)
T ss_dssp HHHHHCSCCEEEECC
T ss_pred HHHHcCCCcEEEECC
Confidence 123667776554
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=0.43 Score=48.67 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCC---CCCcEEEEcCChhhHHHHHhc------C--CCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNT---VGWPFVAFDLNPSVVKESRKL------G--FPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~---~g~~vvvID~d~~~v~~~~~~------~--~~~v~GD~t~~~~L~ 599 (791)
+.++|.|. |.+|+.+++.|. + +|++|+++|.+++..+++.+. + ..++.+|.+|++.++
T Consensus 7 k~~lVTGas~gIG~~ia~~l~----------~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~ 76 (259)
T 1oaa_A 7 AVCVLTGASRGFGRALAPQLA----------RLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQ 76 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHH----------TTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHHH----------HhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHH
Confidence 35677775 689999999998 6 899999999999876654321 2 567889999998766
Q ss_pred h
Q 003861 600 S 600 (791)
Q Consensus 600 ~ 600 (791)
+
T Consensus 77 ~ 77 (259)
T 1oaa_A 77 R 77 (259)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.88 E-value=0.69 Score=48.42 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC-HHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~-~~~L~~agi~~a~~ 608 (791)
.++++|.|. |.+|+..++.++ ..|.+|+++|.++++.+.+++.|...+. |.++ ++..++. +.+|.
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~----------~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~--~~~d~ 192 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVAR----------AMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAW--GGLDL 192 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHH----------HTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHT--TSEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhcCCCEEE-ECCcchhHHHHh--cCceE
Confidence 457999998 999999999988 7899999999999999888888876543 5565 5655555 67898
Q ss_pred EEEEeCC
Q 003861 609 VMIMYTD 615 (791)
Q Consensus 609 viv~~~~ 615 (791)
++- .+.
T Consensus 193 vid-~g~ 198 (302)
T 1iz0_A 193 VLE-VRG 198 (302)
T ss_dssp EEE-CSC
T ss_pred EEE-CCH
Confidence 887 776
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=88.86 E-value=0.66 Score=52.96 Aligned_cols=90 Identities=18% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCCh--hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~--~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.+++.++|.|..|.. +|+.|. +.|++|.+.|.++ +..+.+++.|..+..|. +++.+ ..++|
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~----------~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~--~~~~~----~~~~d 82 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLAR----------ALGHTVTGSDANIYPPMSTQLEQAGVTIEEGY--LIAHL----QPAPD 82 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCCCTTHHHHHHHTTCEEEESC--CGGGG----CSCCS
T ss_pred CCEEEEEEecHhhHHHHHHHHH----------hCCCEEEEECCCCCcHHHHHHHHCCCEEECCC--CHHHc----CCCCC
Confidence 468999999999997 788888 8999999999864 45677888999999883 33333 14689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.||+...=+.+|-.+ ..||+.+ ++|+-+.
T Consensus 83 ~vV~Spgi~~~~p~l-~~a~~~g--i~v~~~~ 111 (524)
T 3hn7_A 83 LVVVGNAMKRGMDVI-EYMLDTG--LRYTSGP 111 (524)
T ss_dssp EEEECTTCCTTSHHH-HHHHHHT--CCEEEHH
T ss_pred EEEECCCcCCCCHHH-HHHHHCC--CcEEEHH
Confidence 887765444445443 5667764 6777664
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.24 Score=55.44 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCC------CCcEEEEcC-ChhhHHHHHhcCCCEEEccC-CCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTV------GWPFVAFDL-NPSVVKESRKLGFPILYGDA-SRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~------g~~vvvID~-d~~~v~~~~~~~~~~v~GD~-t~~~~L~~agi 603 (791)
+++.|+|+|.+|..+++.|+ +. |.+|++-+. +++..+.+++.|+.+..+.. +..++.
T Consensus 55 KkIgIIGlGsMG~AmA~nLr----------~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa----- 119 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLR----------DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETV----- 119 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHH----------HHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHH-----
T ss_pred CEEEEEeEhHHHHHHHHHHH----------hcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHH-----
Confidence 47999999999999999998 55 888876544 45566777777765311101 123333
Q ss_pred CCCcEEEEEeCCHH
Q 003861 604 TSPKAVMIMYTDKK 617 (791)
Q Consensus 604 ~~a~~viv~~~~d~ 617 (791)
++||.|++++++..
T Consensus 120 ~~ADVVILaVP~~~ 133 (525)
T 3fr7_A 120 SGSDLVLLLISDAA 133 (525)
T ss_dssp HHCSEEEECSCHHH
T ss_pred hcCCEEEECCChHH
Confidence 56899999998753
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.54 Score=50.73 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=69.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH-HHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v-~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+++|+|.|+.|+.+++.++ +.|++++++|.+++.. ....+ . +..|..|.+.+.+.- +++|.++.
T Consensus 1 ~iliiG~g~~g~~~~~a~~----------~~G~~v~~~~~~~~~~~~~~a~---~-~~~~~~d~~~l~~~~-~~~d~v~~ 65 (369)
T 3aw8_A 1 MIGILGGGQLGRMLALAGY----------PLGLSFRFLDPSPEACAGQVGE---L-VVGEFLDEGALLRFA-EGLALVTY 65 (369)
T ss_dssp CEEEECCSHHHHHHHHHHT----------TBTCCEEEEESCTTCGGGGTSE---E-EECCTTCHHHHHHHH-TTCSEEEE
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCChHHHhhc---e-EecCCCCHHHHHHHH-hCCCEEEE
Confidence 4789999999999999998 8999999999886542 11111 2 578999988887755 78998876
Q ss_pred EeCCHHHHHHHHHHHHHhC---CCCcEEEEecChhhHH-HHHHCCCC
Q 003861 612 MYTDKKRTIEAVQRLRLAF---PAIPIYARAQDMMHLL-DLKKAGAT 654 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~---p~~~iiara~~~~~~~-~L~~~Gad 654 (791)
..++. +...+..+.+.+ |+...+....|....+ .+++.|+.
T Consensus 66 ~~e~~--~~~~~~~l~~~g~~g~~~~~~~~~~dK~~~k~~l~~~gip 110 (369)
T 3aw8_A 66 EFENV--PVEAARRLEGRLPLYPPAKALEVAQDRLREKTFFQGLGVP 110 (369)
T ss_dssp CCTTC--CHHHHHHHHHHSCBSSCHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred CCCCc--CHHHHHHHHHcCCcCCCHHHHHHhcCHHHHHHHHHHCCCC
Confidence 55442 233333444432 3333444555554444 45777765
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=0.22 Score=53.62 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+|+.|+ ..|.+|++.|.+++. ..+.+.. +. +-++.+ +++|.|++
T Consensus 149 ktvgIiGlG~IG~~vA~~l~----------~~G~~V~~~d~~~~~---~~~~~~~--~~--~l~ell-----~~aDvV~l 206 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFS----------AMGAKVIAYDVAYNP---EFEPFLT--YT--DFDTVL-----KEADIVSL 206 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCG---GGTTTCE--EC--CHHHHH-----HHCSEEEE
T ss_pred CeEEEEecCHHHHHHHHHHh----------hCCCEEEEECCChhh---hhhcccc--cc--CHHHHH-----hcCCEEEE
Confidence 47999999999999999998 889999999998764 1112211 11 222333 46788888
Q ss_pred EeCCHHH--HHHHHHHHHHhCCC
Q 003861 612 MYTDKKR--TIEAVQRLRLAFPA 632 (791)
Q Consensus 612 ~~~~d~~--n~~~~~~ar~l~p~ 632 (791)
+++..++ ++.-...++.+.|+
T Consensus 207 ~~Plt~~t~~li~~~~l~~mk~g 229 (343)
T 2yq5_A 207 HTPLFPSTENMIGEKQLKEMKKS 229 (343)
T ss_dssp CCCCCTTTTTCBCHHHHHHSCTT
T ss_pred cCCCCHHHHHHhhHHHHhhCCCC
Confidence 7775322 22223344445554
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=88.72 E-value=0.7 Score=49.07 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=61.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhh-HHH-HHhcCCCEEEccCCC-HHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSV-VKE-SRKLGFPILYGDASR-PAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~-v~~-~~~~~~~~v~GD~t~-~~~L~~agi~~a~ 607 (791)
-++.|+|+|.+|+.+++.|.+. ..+.+ +.+.|.|+++ .+. +++.|..... ++ ++.++..+-++.|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~--------~~~~elvav~d~~~~~~~~~~a~~~g~~~~~---~~~e~ll~~~~~~~iD 73 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRN--------AKYLEMGAMVGIDAASDGLARAQRMGVTTTY---AGVEGLIKLPEFADID 73 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--------CSSEEEEEEECSCTTCHHHHHHHHTTCCEES---SHHHHHHHSGGGGGEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhh--------CcCeEEEEEEeCChhhhHHHHHHHcCCCccc---CCHHHHHhccCCCCCc
Confidence 3699999999999999999510 23444 4567999887 333 4456655332 23 3345544457899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
+|+.+++. +.....+..+.+..++.+|+.
T Consensus 74 vV~~atp~-~~h~~~a~~al~a~~Gk~Vi~ 102 (312)
T 1nvm_B 74 FVFDATSA-SAHVQNEALLRQAKPGIRLID 102 (312)
T ss_dssp EEEECSCH-HHHHHHHHHHHHHCTTCEEEE
T ss_pred EEEECCCh-HHHHHHHHHHHHhCCCCEEEE
Confidence 99999994 556666666666633345665
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=88.69 E-value=0.56 Score=48.01 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHHHHh----c--CCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~~~~----~--~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|++. +.+++..++..+ . ...++.+|.+|++.++++
T Consensus 5 k~vlVTGas~gIG~aia~~l~----------~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 5 KCALVTGSSRGVGKAAAIRLA----------ENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46777776 679999999998 899999997 888877655432 2 356788999999877653
Q ss_pred C----CCCCcEEEEEe
Q 003861 602 G----ITSPKAVMIMY 613 (791)
Q Consensus 602 g----i~~a~~viv~~ 613 (791)
. ..+.|.+|-..
T Consensus 75 ~~~~~~g~id~lv~nA 90 (258)
T 3oid_A 75 QIDETFGRLDVFVNNA 90 (258)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 1 13568777655
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.61 Score=47.91 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=54.8
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc----CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL----GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~----~~~~v~GD~t~~~~L~~a- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++.. +. ....+.+|.+|++.++++
T Consensus 11 k~~lVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~ 80 (267)
T 3t4x_A 11 KTALVTGSTAGIGKAIATSLV----------AEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVI 80 (267)
T ss_dssp CEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHH
Confidence 35777776 679999999998 89999999999998765443 22 245678999999877654
Q ss_pred -CCCCCcEEEEEeC
Q 003861 602 -GITSPKAVMIMYT 614 (791)
Q Consensus 602 -gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 81 ~~~g~id~lv~nAg 94 (267)
T 3t4x_A 81 EKYPKVDILINNLG 94 (267)
T ss_dssp HHCCCCSEEEECCC
T ss_pred HhcCCCCEEEECCC
Confidence 3457788776553
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.55 Score=51.19 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.+-+|.|||.| +|+.-++.+.+ ...+.+++ +.|.|+++.+++. +.|+++ +.|. +-| +++.|
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~--------~~~~~elvav~~~~~~~a~~~a~~~gv~~-~~~~---~~l----~~~~D 68 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGSARSRELAHAFGIPL-YTSP---EQI----TGMPD 68 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSS--------CCTTEEEEEEECCSSHHHHHHHHHTTCCE-ESSG---GGC----CSCCS
T ss_pred CCCEEEEEehH-HHHHHHHHHHh--------CCCCeEEEEEECCCHHHHHHHHHHhCCCE-ECCH---HHH----hcCCC
Confidence 35579999999 89988887751 02356666 6699999987764 578874 4443 333 25689
Q ss_pred EEEEEeCCHHH---HHHHHHHHHHhCCCCcEEEEec-ChhhHHH----HHHCCCCeEEcCc
Q 003861 608 AVMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQ-DMMHLLD----LKKAGATDAILEN 660 (791)
Q Consensus 608 ~viv~~~~d~~---n~~~~~~ar~l~p~~~iiara~-~~~~~~~----L~~~Gad~Vi~p~ 660 (791)
++++++++... -..++..+-+.+ .+|++.-. +.+..+. -++.|+-..+...
T Consensus 69 ~v~i~~p~~~h~~~~~~~a~~al~aG--khVl~EKPl~~~ea~~l~~~A~~~g~~~~v~~~ 127 (372)
T 4gmf_A 69 IACIVVRSTVAGGAGTQLARHFLARG--VHVIQEHPLHPDDISSLQTLAQEQGCCYWINTF 127 (372)
T ss_dssp EEEECCC--CTTSHHHHHHHHHHHTT--CEEEEESCCCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred EEEEECCCcccchhHHHHHHHHHHcC--CcEEEecCCCHHHHHHHHHHHHHcCCEEEEcCc
Confidence 99999887532 255666666654 45655321 2333333 3667888777543
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.66 E-value=0.14 Score=54.57 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+++.|+|+|++|+.+++.|+ ..|.+|++.|.+++.
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~----------~~G~~V~~~d~~~~~ 179 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRAL----------AFGMRVVYHARTPKP 179 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCS
T ss_pred CEEEEEEECHHHHHHHHHHH----------HCCCEEEEECCCCcc
Confidence 46999999999999999998 789999999988764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.44 Score=48.97 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+ ....++.+|.+|++..+++
T Consensus 21 k~vlVTGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~ 90 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFA----------AAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELAR 90 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35677776 679999999998 899999999999987655432 2466788999999876543
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 91 ~~~~~~g~id~lv~nAg 107 (266)
T 4egf_A 91 RAAEAFGGLDVLVNNAG 107 (266)
T ss_dssp HHHHHHTSCSEEEEECC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1236787776543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.64 E-value=0.39 Score=49.95 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc------C-CCEEEccCCCHHHHHhc--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------G-FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~------~-~~~v~GD~t~~~~L~~a-- 601 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.+++..++..+. . ..++.+|.+|++.++++
T Consensus 34 k~~lVTGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 34 RIALVTGGGTGVGRGIAQALS----------AEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 35777775 679999999998 8899999999999876654321 1 36789999999876653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 104 ~~~~~~g~iD~lvnnA 119 (281)
T 4dry_A 104 AVRAEFARLDLLVNNA 119 (281)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 113567776554
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.18 Score=54.48 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-----HHHHHh------c-CCCEEEccCCCHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----VKESRK------L-GFPILYGDASRPAVL 598 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-----v~~~~~------~-~~~~v~GD~t~~~~L 598 (791)
+.++|.|. |-+|+.+++.|. +.|++|++++.+++. .+.+.+ . +..++.+|.+|++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 98 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLL----------GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSL 98 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHH----------HCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHH
Confidence 57999997 999999999998 789999999987654 222211 1 567889999999887
Q ss_pred HhcCCC-CCcEEEEEeC
Q 003861 599 LSAGIT-SPKAVMIMYT 614 (791)
Q Consensus 599 ~~agi~-~a~~viv~~~ 614 (791)
+++=-+ +.|+||-+..
T Consensus 99 ~~~~~~~~~d~Vih~A~ 115 (381)
T 1n7h_A 99 RRWIDVIKPDEVYNLAA 115 (381)
T ss_dssp HHHHHHHCCSEEEECCS
T ss_pred HHHHHhcCCCEEEECCc
Confidence 764111 5688876654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=1.2 Score=47.62 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHH---HHHh-cCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPA---VLLS-AGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~---~L~~-agi~~ 605 (791)
.++++|.|.|.+|+..++.++ ..|. +|+++|.++++.+.+++.|...+. |.++++ .+++ .+=..
T Consensus 168 g~~VlV~GaG~vG~~~~q~a~----------~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 168 GKSVLITGAGPLGLLGIAVAK----------ASGAYPVIVSEPSDFRRELAKKVGADYVI-NPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TCCEEEECCSHHHHHHHHHHH----------HTTCCSEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTSC
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCCcCHHHHHHHHcCCCC
Confidence 357999999999999999998 7898 999999999999999888876543 444433 2333 23346
Q ss_pred CcEEEEEeCCH
Q 003861 606 PKAVMIMYTDK 616 (791)
Q Consensus 606 a~~viv~~~~d 616 (791)
+|.++-+++..
T Consensus 237 ~D~vid~~g~~ 247 (348)
T 2d8a_A 237 VDVFLEFSGAP 247 (348)
T ss_dssp EEEEEECSCCH
T ss_pred CCEEEECCCCH
Confidence 89888888763
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.49 E-value=0.45 Score=49.56 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=54.2
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hc---CCCEEEccCCCH-HHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL---GFPILYGDASRP-AVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~---~~~~v~GD~t~~-~~L~~a 601 (791)
.+.++|.|. |-+|+.+++.|. ++|++|++++.+++..++.. +. ...++.+|.+|+ +..+++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~ 81 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLS----------SNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSL 81 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHH
Confidence 346788886 679999999998 88999999999998755443 22 356788999997 544432
Q ss_pred ------CCCCCcEEEEEeC
Q 003861 602 ------GITSPKAVMIMYT 614 (791)
Q Consensus 602 ------gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 82 ~~~~~~~~g~iD~lv~nAg 100 (311)
T 3o26_A 82 ADFIKTHFGKLDILVNNAG 100 (311)
T ss_dssp HHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHhCCCCCEEEECCc
Confidence 1246787776654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=88.45 E-value=0.39 Score=54.91 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=49.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+|+.|+ ..|.+|++.|.+++. +.+.+.|... .+-++.+ +++|.++
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~-~~a~~~g~~~----~~l~e~~-----~~aDvV~ 201 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIA----------AFGAYVVAYDPYVSP-ARAAQLGIEL----LSLDDLL-----ARADFIS 201 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECTTSCH-HHHHHHTCEE----CCHHHHH-----HHCSEEE
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCcEE----cCHHHHH-----hcCCEEE
Confidence 347999999999999999998 889999999988753 4455556543 1223344 3578888
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
++++.+
T Consensus 202 l~~P~~ 207 (529)
T 1ygy_A 202 VHLPKT 207 (529)
T ss_dssp ECCCCS
T ss_pred ECCCCc
Confidence 888765
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=88.41 E-value=0.23 Score=52.04 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC-CCcEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT-SPKAV 609 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~-~a~~v 609 (791)
++++|.|. |.+|+.+++.|. +.|++|++++.+++. .+ ++.+|.+|++.++++=-+ ++|+|
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQ----------QNNWHAVGCGFRRAR------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------TTTCEEEEEC--------------------------CHHHHHHHCCSEE
T ss_pred CeEEEECCCcHHHHHHHHHHH----------hCCCeEEEEccCCCC------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 46889987 999999999998 789999999976654 12 788999998876654111 57877
Q ss_pred EEEeC
Q 003861 610 MIMYT 614 (791)
Q Consensus 610 iv~~~ 614 (791)
|-+.+
T Consensus 65 ih~A~ 69 (315)
T 2ydy_A 65 VHCAA 69 (315)
T ss_dssp EECC-
T ss_pred EECCc
Confidence 76543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=1.2 Score=52.90 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=36.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 580 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~ 580 (791)
-++|.|+|.|.+|..+|..|. +.|++|++.|.|++.++..
T Consensus 314 i~kV~VIGaG~MG~~iA~~la----------~aG~~V~l~D~~~~~~~~~ 353 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSA----------SKGTPILMKDINEHGIEQG 353 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHH
T ss_pred CCEEEEECCChhhHHHHHHHH----------hCCCEEEEEECCHHHHHHH
Confidence 347999999999999999998 7899999999999987764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=88.38 E-value=2.3 Score=41.29 Aligned_cols=97 Identities=15% Similarity=0.004 Sum_probs=58.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-------cCCCEEEccCCCHHHHHhcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-------~~~~~v~GD~t~~~~L~~agi 603 (791)
..+++-+|+|. |......... ..+.+|+.+|.+++.++.+++ ....++.+|..+. +. ..
T Consensus 41 ~~~vLDiG~G~-G~~~~~la~~---------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~--~~ 106 (204)
T 3e05_A 41 DLVMWDIGAGS-ASVSIEASNL---------MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG--LD--DL 106 (204)
T ss_dssp TCEEEEETCTT-CHHHHHHHHH---------CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT--CT--TS
T ss_pred CCEEEEECCCC-CHHHHHHHHH---------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh--hh--cC
Confidence 45788888874 4433333320 124789999999999887764 2467888998643 21 22
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 641 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~ 641 (791)
+.+|.+++..........+-...+.+.|+-.++.....
T Consensus 107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 57898876654332223334445556777666654433
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=88.34 E-value=1.7 Score=40.90 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cCCC---EEEccCCCHHHHHhcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFP---ILYGDASRPAVLLSAGI 603 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~~~---~v~GD~t~~~~L~~agi 603 (791)
..+++-+|+|. |........ ...+.+|+.+|.+++.++.+++ .+.. .+.+|..+ .+....
T Consensus 26 ~~~vldiG~G~-G~~~~~l~~---------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~- 92 (178)
T 3hm2_A 26 HETLWDIGGGS-GSIAIEWLR---------STPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR--AFDDVP- 92 (178)
T ss_dssp TEEEEEESTTT-THHHHHHHT---------TSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG--GGGGCC-
T ss_pred CCeEEEeCCCC-CHHHHHHHH---------HCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh--hhhccC-
Confidence 44789999986 655544443 0237889999999999887764 2333 67777754 444321
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 604 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 604 ~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
+.+|.|++...-.. ...+-...+.+.|+-.++...
T Consensus 93 ~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp SCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEE
T ss_pred CCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEe
Confidence 67998876543322 112233334456665555543
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.62 Score=50.57 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=69.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-CCCCCcE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKA 608 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~ 608 (791)
.+++++|+|.|..|+.+++.++ +.|++++++|.+++.. ........+..|..|++.+.++ .-.++|+
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~----------~~G~~v~~~~~~~~~~--~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~ 77 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQ----------RLGVEVIAVDRYADAP--AMHVAHRSHVINMLDGDALRRVVELEKPHY 77 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHH----------TTTCEEEEEESSTTCG--GGGGSSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEECCCCCc--hhhhccceEECCCCCHHHHHHHHHHcCCCE
Confidence 3468999999999999999998 8999999999987652 1122234567788887766553 2346887
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC----CCCcEEEEecChhhHHHH--HHCCCC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF----PAIPIYARAQDMMHLLDL--KKAGAT 654 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~----p~~~iiara~~~~~~~~L--~~~Gad 654 (791)
++...++-..+ .+..+.+.+ |+...+....|....+.+ ++.|+.
T Consensus 78 v~~~~e~~~~~--~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip 127 (391)
T 1kjq_A 78 IVPEIEAIATD--MLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLP 127 (391)
T ss_dssp EEECSSCSCHH--HHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCC
T ss_pred EEECCCcCCHH--HHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCC
Confidence 77665542222 233333332 222233344455544444 467764
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=88.27 E-value=0.96 Score=49.65 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCEEEeCCChhHHHHHHHhhhhc--cCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPL--ASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~--~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
=+|-|+|+|.+|+.-++.+++-- ..++ ..+.+++ +.|.|+++.+++. +.+..-.+.|. ++.|++ .+.|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~---~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~--~~ll~~---~~vD 98 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDL---PKRPHLYALADQDQAMAERHAAKLGAEKAYGDW--RELVND---PQVD 98 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTS---SSEEEEEEEECSSHHHHHHHHHHHTCSEEESSH--HHHHHC---TTCC
T ss_pred ceEEEEcCcHHHHHHHHHHHhcccccccc---CCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCH--HHHhcC---CCCC
Confidence 37999999999998887775100 0000 1244555 5699999988765 46776666543 345554 5679
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+|+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 99 ~V~I~tp~~~H-~~~~~~al~aG--khVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 153 (412)
T 4gqa_A 99 VVDITSPNHLH-YTMAMAAIAAG--KHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVA 153 (412)
T ss_dssp EEEECSCGGGH-HHHHHHHHHTT--CEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEECCCcHHH-HHHHHHHHHcC--CCeEeecCCcCCHHHHHHHHHHHHHhCCeeeec
Confidence 99999987543 44555555554 467774 3455555544 4556655544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=88.25 E-value=1.6 Score=47.15 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=66.7
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
-++.|+|+|.+|+. .++.+.+ ..+.+++ +.|.|+++.+ ++.+..-.+.|. ++.|+ -.+.|+|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~---------~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~--~~ll~---~~~~D~V 71 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRS---------VPGLNLAFVASRDEEKVK--RDLPDVTVIASP--EAAVQ---HPDVDLV 71 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHT---------STTEEEEEEECSCHHHHH--HHCTTSEEESCH--HHHHT---CTTCSEE
T ss_pred ceEEEECCCHHHHHHHHHHHhh---------CCCeEEEEEEcCCHHHHH--hhCCCCcEECCH--HHHhc---CCCCCEE
Confidence 36999999999997 7777761 3477776 6699998765 233223334322 23443 2578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+++++++.. ...+..+-+.+ .+|++. +.+.+..+.+ ++.|....+.
T Consensus 72 ~i~tp~~~H-~~~~~~al~aG--k~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 124 (364)
T 3e82_A 72 VIASPNATH-APLARLALNAG--KHVVVDKPFTLDMQEARELIALAEEKQRLLSVF 124 (364)
T ss_dssp EECSCGGGH-HHHHHHHHHTT--CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred EEeCChHHH-HHHHHHHHHCC--CcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 999987543 44455555554 467763 3455554444 5567665444
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=88.25 E-value=0.77 Score=48.95 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=56.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHH---HHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA---VLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~---~L~~agi~~a~ 607 (791)
.+.++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |.++++ .+++.+ ..+|
T Consensus 167 g~~VlV~GaG~vG~~a~qla~----------~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~-g~~d 234 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYAR----------AMGLRVAAVDIDDAKLNLARRLGAEVAV-NARDTDPAAWLQKEI-GGAH 234 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHH-SSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhC-CCCC
Confidence 457999999999999999888 7899999999999999999998876553 444433 233321 2688
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-+.+..+
T Consensus 235 ~vid~~g~~~ 244 (340)
T 3s2e_A 235 GVLVTAVSPK 244 (340)
T ss_dssp EEEESSCCHH
T ss_pred EEEEeCCCHH
Confidence 8877776543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.39 Score=48.73 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=62.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-ccCCCHHHHHhcC-CCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-GDASRPAVLLSAG-ITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-GD~t~~~~L~~ag-i~~a~~ 608 (791)
+.++.|+|.|.+|..+++.|. +.|++|+.+|..++ +++.+ ++. -|..-.+++++.. .-+.+.
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~----------~~G~~V~~~~~~~~----~~~aD--ilavP~~ai~~vl~~l~~~l~~g~ 69 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLD----------SVGHYVTVLHAPED----IRDFE--LVVIDAHGVEGYVEKLSAFARRGQ 69 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHH----------HTTCEEEECSSGGG----GGGCS--EEEECSSCHHHHHHHHHTTCCTTC
T ss_pred CcEEEEEeeCHHHHHHHHHHH----------HCCCEEEEecCHHH----hccCC--EEEEcHHHHHHHHHHHHHhcCCCC
Confidence 447999999999999999998 78999999998543 33333 222 2333355665542 223444
Q ss_pred EEEEe-CCHHHHHHHHHHHHHhCC---------CCcEEEEecChh----hHHHHHHCCCCeEEcCcH
Q 003861 609 VMIMY-TDKKRTIEAVQRLRLAFP---------AIPIYARAQDMM----HLLDLKKAGATDAILENA 661 (791)
Q Consensus 609 viv~~-~~d~~n~~~~~~ar~l~p---------~~~iiara~~~~----~~~~L~~~Gad~Vi~p~~ 661 (791)
+++.+ +.-... +...+++... ..+.+....+++ -.+.++.+|+..+..+..
T Consensus 70 ivvd~sgs~~~~--vl~~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~~ 134 (232)
T 3dfu_A 70 MFLHTSLTHGIT--VMDPLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELGGSIVEIADD 134 (232)
T ss_dssp EEEECCSSCCGG--GGHHHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTTCEECCCCGG
T ss_pred EEEEECCcCHHH--HHHHHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhCCEEEEeCHH
Confidence 54543 332221 2222223221 112233343443 244457778877666543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.35 Score=49.88 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=52.5
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h--cCCCEEEccCCCHHHHHhcC--
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSAG-- 602 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~--~~~~~v~GD~t~~~~L~~ag-- 602 (791)
+.++|.|. |.+|+.+++.|. ++|++|++++.+++..+.+. + ....++.+|.+|++.++++=
T Consensus 35 k~vlITGasggIG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 104 (279)
T 3ctm_A 35 KVASVTGSSGGIGWAVAEAYA----------QAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQ 104 (279)
T ss_dssp CEEEETTTTSSHHHHHHHHHH----------HHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHH
Confidence 45777765 689999999998 78999999999876544432 2 23567889999998776541
Q ss_pred ----CCCCcEEEEEe
Q 003861 603 ----ITSPKAVMIMY 613 (791)
Q Consensus 603 ----i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 105 ~~~~~g~id~li~~A 119 (279)
T 3ctm_A 105 QEKDFGTIDVFVANA 119 (279)
T ss_dssp HHHHHSCCSEEEECG
T ss_pred HHHHhCCCCEEEECC
Confidence 13578777654
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=88.19 E-value=0.54 Score=49.66 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=53.5
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCC---C---CcEEEEcCCh-----hhHHHHH-hcCCCEEEccCCCHHHHH
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTV---G---WPFVAFDLNP-----SVVKESR-KLGFPILYGDASRPAVLL 599 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~---g---~~vvvID~d~-----~~v~~~~-~~~~~~v~GD~t~~~~L~ 599 (791)
+++|.| .|.+|+.+++.|. ++ | ++|+++|.++ +..+.+. ..+..++.+|.+|++.++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~----------~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLL----------AGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLA 71 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHH
T ss_pred eEEEECCccHHHHHHHHHHH----------hhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHH
Confidence 478888 5999999999998 54 7 8999998754 2222222 135778999999999998
Q ss_pred hcCCCCCcEEEEEeC
Q 003861 600 SAGITSPKAVMIMYT 614 (791)
Q Consensus 600 ~agi~~a~~viv~~~ 614 (791)
++= +++|+||-+..
T Consensus 72 ~~~-~~~d~Vih~A~ 85 (337)
T 1r6d_A 72 REL-RGVDAIVHFAA 85 (337)
T ss_dssp HHT-TTCCEEEECCS
T ss_pred HHh-cCCCEEEECCC
Confidence 763 78898887654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.36 Score=51.26 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..++.|+|+|.+|+.+++.|.+ ..|. +|.+.|.++++.+++.+. +..+.. .++.+-. ++++|.
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~---------~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~--~~~~~e~----v~~aDi 199 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTE---------QFSFKEVRIWNRTKENAEKFADTVQGEVRV--CSSVQEA----VAGADV 199 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------HCCCSEEEEECSSHHHHHHHHHHSSSCCEE--CSSHHHH----HTTCSE
T ss_pred CcEEEEECCcHHHHHHHHHHHH---------hCCCcEEEEEcCCHHHHHHHHHHhhCCeEE--eCCHHHH----HhcCCE
Confidence 4479999999999999999971 2365 899999999998888654 311211 2233221 246899
Q ss_pred EEEEeCC
Q 003861 609 VMIMYTD 615 (791)
Q Consensus 609 viv~~~~ 615 (791)
|+.++++
T Consensus 200 Vi~atp~ 206 (312)
T 2i99_A 200 IITVTLA 206 (312)
T ss_dssp EEECCCC
T ss_pred EEEEeCC
Confidence 9999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 791 | ||||
| d1id1a_ | 153 | c.2.1.9 (A:) Rck domain from putative potassium ch | 4e-12 | |
| d2hmva1 | 134 | c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T | 6e-12 | |
| d2fy8a1 | 129 | c.2.1.9 (A:116-244) Potassium channel-related prot | 9e-12 | |
| d1lssa_ | 132 | c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja | 3e-06 |
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (151), Expect = 4e-12
Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 7/150 (4%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
++ G + L+ G V + + +++ ++ GD++
Sbjct: 6 FIVCGHSILAINTILQLNQ------RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSN 59
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
+VL AGI +A++ + + V + + D +L +K
Sbjct: 60 DSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHP 119
Query: 654 TDAILENAETSLQLGSKLLKGFGVMSDDVT 683
+ S L +++L G + +D +
Sbjct: 120 DIILSPQLFGSEIL-ARVLNGEEINNDMLV 148
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Score = 61.5 bits (148), Expect = 6e-12
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
++G G+ G + L +G +A D+N V + +A+
Sbjct: 3 FAVIGLGRFGGSIVKELHR----------MGHEVLAVDINEEKVNAYASYATHAVIANAT 52
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
LLS GI + + V++ + L I+ +AQ+ H L+K GA
Sbjct: 53 EENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGA 112
Query: 654 TDAILENAETSLQLGSKLL 672
I + +++ L
Sbjct: 113 DRIIHPEKDMGVKIAQSLS 131
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Score = 61.0 bits (147), Expect = 9e-12
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDAS 593
VVI G+ + L G + +V K+ + G ++GD +
Sbjct: 3 VVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPT 50
Query: 594 RPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653
R + L A + +AV++ TI + +R ++ I A A+ ++ L+ AGA
Sbjct: 51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGA 110
Query: 654 TDAILENAETSLQLGSKL 671
I + + +
Sbjct: 111 DQVISPFVISGRLMSRSI 128
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.9 bits (105), Expect = 3e-06
Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 12/141 (8%)
Query: 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF-PILYGDA 592
++I G G++G LA LS G V D++ + K++ ++ GD
Sbjct: 3 IIIAGIGRVGYTLAKSLSEK----------GHDIVLIDIDKDICKKASAEIDALVINGDC 52
Query: 593 SRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAG 652
++ L AGI + + ++ + + + ++ AR ++ + ++ G
Sbjct: 53 TKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAK-SYGINKTIARISEIEYKDVFERLG 111
Query: 653 ATDAILENAETSLQLGSKLLK 673
+ + + + +
Sbjct: 112 VDVVVSPELIAANYIEKLIER 132
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 791 | |||
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 99.91 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 99.91 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 99.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 99.9 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.77 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.61 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.48 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.47 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.33 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.29 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.29 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.22 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.94 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.88 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.69 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 96.63 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.6 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.37 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.33 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.04 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 95.8 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.75 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.73 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.72 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.67 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.66 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.58 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.44 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.26 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.22 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.17 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 95.09 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.05 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.04 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.01 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.83 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.82 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.71 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.69 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.6 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 94.59 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.38 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.36 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.33 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.32 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.31 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.3 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.27 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.23 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.12 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.1 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.82 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 93.78 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 93.71 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 93.68 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.62 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 93.6 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.54 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.52 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.45 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.43 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.41 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.27 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.15 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 93.05 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.03 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.93 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.93 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.9 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.9 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 92.89 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 92.89 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.82 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.81 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.72 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 92.67 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.63 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 92.62 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.54 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.53 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.49 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 92.47 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.46 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.38 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.35 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.35 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 92.34 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.16 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.13 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.96 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 91.89 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 91.83 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.8 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.71 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.66 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 91.64 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.59 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.56 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.36 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.35 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.34 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.32 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.3 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.27 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.24 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.21 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.19 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.16 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.05 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.02 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.93 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 90.85 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 90.77 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.77 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.76 | |
| d2fy8a2 | 92 | Potassium channel-related protein MthK, C-terminal | 90.7 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.7 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 90.67 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.62 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 90.6 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 90.55 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 90.52 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.4 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 90.24 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.23 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 90.23 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 90.21 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.2 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 90.19 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.13 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.01 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.94 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.93 | |
| d1qo0d_ | 189 | Positive regulator of the amidase operon AmiR {Pse | 89.87 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 89.64 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 89.61 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.58 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.53 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.51 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.5 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.48 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 89.42 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 89.24 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.11 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.07 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 88.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 88.94 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 88.81 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.6 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 88.56 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 88.52 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 88.48 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.46 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 88.45 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.42 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 88.31 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.95 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 87.54 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 87.48 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.41 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.39 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 87.34 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.23 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.2 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 87.17 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.16 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 87.16 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 87.03 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 86.83 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 86.69 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 86.69 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 86.67 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 86.61 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 86.48 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 86.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.22 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 86.18 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 86.11 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.1 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 86.06 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 85.99 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 85.92 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 85.74 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 85.74 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 85.54 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 85.44 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 85.34 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 85.29 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 85.02 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 84.95 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 84.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 84.79 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 84.59 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 84.52 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 84.5 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 84.43 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 84.41 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 84.28 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 84.23 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.21 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.0 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 83.91 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 83.91 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 83.88 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 83.76 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 83.67 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.66 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 83.6 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 83.44 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.81 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.65 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 82.51 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.44 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 82.24 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 82.21 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 82.13 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.08 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 81.95 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 81.89 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 81.88 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 81.87 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 81.82 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 81.8 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 81.62 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 81.33 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.24 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 80.88 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.83 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.82 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 80.72 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 80.7 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.52 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.38 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.27 |
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.1e-24 Score=204.01 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=125.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++++|||+|++|+.+++.|. +.|++|++||.|+++++++++.+.++++||++++++|+++|+++||.+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~----------~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELH----------RMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHH----------HTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEE
Confidence 47999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
++++|+.|..++..+++.+|..++++|++++++.+.|+++|+|+||.|+.++|.++++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~a~~la~~l~~ 132 (134)
T d2hmva1 71 AIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSD 132 (134)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHHH
T ss_pred EcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHHHHHHHHHHHHhC
Confidence 99988777777788888888889999999999999999999999999999999999988876
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=99.91 E-value=1.7e-24 Score=201.53 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=121.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+|+||||||+.|+.++++|+ +.++++||.|+++++.+++.|.++++||++|+++|+++|+++|+++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~------------~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~ 68 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR------------GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIV 68 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC------------GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHc------------CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEE
Confidence 59999999999999999995 457899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSK 670 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~ 670 (791)
++++|+.|+.+++.+|+++|+++++++++++++.+.++++|+|.||+|+..+|+.+++.
T Consensus 69 ~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~~~~~~~la~~ 127 (129)
T d2fy8a1 69 NLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRS 127 (129)
T ss_dssp CCSSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHHHCSEEECHHHHHHHHHHHT
T ss_pred eccchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHCCCCEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.5e-24 Score=204.52 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=125.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh----HHHHHhcCCCEEEccCCCHHHHHhcCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~----v~~~~~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++|+||||||++|+.+++.|. +.|++|++||.|++. .++....++.+++||++|+++|+++|+++
T Consensus 2 ~knHiII~G~g~~g~~l~~~L~----------~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~ 71 (153)
T d1id1a_ 2 RKDHFIVCGHSILAINTILQLN----------QRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHH----------HTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhcccc
Confidence 4789999999999999999998 889999999999875 44455678999999999999999999999
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHh
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
|+++|+++++|+.|+.+++.+|+++|+.+++|+++++++.+.|+++|||.||+|+..+|..+++.+..
T Consensus 72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~~l~~ 139 (153)
T d1id1a_ 72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNG 139 (153)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTT
T ss_pred CCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999976543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=1.5e-23 Score=195.86 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=121.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+|+|||+|++|+.+++.|. +.|++|++||.||++++++++. +..+++||++|+++|+++|+++|+++++
T Consensus 2 ~IvI~G~G~~G~~la~~L~----------~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLS----------EKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcc
Confidence 6899999999999999998 8999999999999999998764 8999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHHHHHHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKL 671 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~ 671 (791)
++++|+.|+.+++.+|+.+++ ++|++++++++.+.++++|+|.||+|+.+++..+++.+
T Consensus 72 ~t~~d~~N~~~~~~~k~~~~~-~iI~~~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~i 130 (132)
T d1lssa_ 72 VTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLI 130 (132)
T ss_dssp CCSCHHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHcCCc-eEEEEecCHHHHHHHHHCCCCEEECHHHHHHHHHHHHh
Confidence 999999999999999999987 99999999999999999999999999999988888765
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.77 E-value=2.6e-05 Score=73.27 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=69.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.++|+|.|.+|+.+|+.|. ++|++|+++|.|+++.+.+.+ .+.....++..+.....+..+..++.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~----------~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLT----------DSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLV 71 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhcccee
Confidence 457899999999999999998 899999999999999999875 444555666666667777788899989
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRLRL 628 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~ 628 (791)
+.+++.+..+.......+.
T Consensus 72 i~~~~~~~~~~~~~~~~~~ 90 (182)
T d1e5qa1 72 ISLIPYTFHATVIKSAIRQ 90 (182)
T ss_dssp EECSCGGGHHHHHHHHHHH
T ss_pred EeeccchhhhHHHHHHHhh
Confidence 8888877665554444443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.61 E-value=3.7e-05 Score=72.82 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH-------HhcCCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL-------LSAGIT 604 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L-------~~agi~ 604 (791)
+++.|+|.|.+|..++..|. +.|++|.++|.++++++.+++.+....+.+..+...- .+..++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 71 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLA----------LKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK 71 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc
Confidence 57999999999999999998 8999999999999999999877655544322211100 011246
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
++|.+++++......-.+-..+..+.++..|+
T Consensus 72 ~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv 103 (184)
T d1bg6a2 72 DADVILIVVPAIHHASIAANIASYISEGQLII 103 (184)
T ss_dssp TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred CCCEEEEEEchhHHHHHHHHhhhccCCCCEEE
Confidence 89999999987765444444444455554443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.48 E-value=8.2e-05 Score=69.51 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=63.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++.|+|+|.+|..+|+.|. +.|++|++.|.|++..+++.+.+..-...| +.+ -++++|.++++
T Consensus 2 kI~iIG~G~mG~~lA~~l~----------~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~--~~~-----~~~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLR----------RRGHYLIGVSRQQSTCEKAVERQLVDEAGQ--DLS-----LLQTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTSCSEEES--CGG-----GGTTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCchHHHHHHHhhccceeee--ecc-----ccccccccccc
Confidence 4789999999999999998 899999999999999999888774322222 222 35799999998
Q ss_pred eCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 613 YTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
++.+ ....+...+++..++-.++.-.
T Consensus 65 vp~~-~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 65 TPIQ-LILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp SCHH-HHHHHHHHHGGGSCTTCEEEEC
T ss_pred CcHh-hhhhhhhhhhhhcccccceeec
Confidence 8754 4444455555543333455544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=6.7e-05 Score=72.65 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=63.7
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++++|.|. |.+|+.++++|. ++|++|++++.|+++.+...+.+.+++.||.+|++.++++ ++++|+|+
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~a-l~~~d~vi 72 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAV----------QAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT-VAGQDAVI 72 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH-HTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEEcChhhcccccccccccccccccchhhHHHH-hcCCCEEE
Confidence 46899995 999999999998 8899999999999987766678899999999999999887 67889988
Q ss_pred EEeC
Q 003861 611 IMYT 614 (791)
Q Consensus 611 v~~~ 614 (791)
.+.+
T Consensus 73 ~~~g 76 (205)
T d1hdoa_ 73 VLLG 76 (205)
T ss_dssp ECCC
T ss_pred EEec
Confidence 8775
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.33 E-value=0.00035 Score=60.97 Aligned_cols=84 Identities=14% Similarity=0.040 Sum_probs=66.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-H-HHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V-KESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-v-~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|+.|..-++.|. +.|.++++++.+... . +.+.+........+..+ ..+++++.
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll----------~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~------~dl~~~~l 75 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLL----------EAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE------TLLDSCWL 75 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG------GGGTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH------HHhCCCcE
Confidence 357999999999999999998 889999999776543 2 33334456666665553 34578899
Q ss_pred EEEEeCCHHHHHHHHHHHHHhC
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~ 630 (791)
++++++|++.|..+...+|+.+
T Consensus 76 v~~at~d~~~n~~i~~~a~~~~ 97 (113)
T d1pjqa1 76 AIAATDDDTVNQRVSDAAESRR 97 (113)
T ss_dssp EEECCSCHHHHHHHHHHHHHTT
T ss_pred EeecCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999985
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.29 E-value=0.00044 Score=65.23 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=81.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC--EEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~--~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+..|-++|+|++|..+|+.|. +.|++|++.|.++++.+++.+.+.. ...| +...+.+.++ +.++|.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-~~~~~~ 69 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMN----------DHGFVVCAFNRTVSKVDDFLANEAKGTKVLG-AHSLEEMVSK-LKKPRR 69 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSTHHHHHHHHTTTTTSSCEE-CSSHHHHHHH-BCSSCE
T ss_pred CCcEEEEeEhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHhccccccccc-hhhhhhhhhh-hcccce
Confidence 347889999999999999998 8999999999999999998876532 2223 3445555443 567788
Q ss_pred EEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecC------hhhHHHHHHCCCCeEEcCc
Q 003861 609 VMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQD------MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~ 660 (791)
++.+..+++.-..+...+.+. .++ .++.-..+ .+..+.+++.|+..+=.|-
T Consensus 70 ii~~~~~~~~v~~v~~~l~~~~~~g-~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapv 127 (176)
T d2pgda2 70 IILLVKAGQAVDNFIEKLVPLLDIG-DIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV 127 (176)
T ss_dssp EEECSCTTHHHHHHHHHHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEecCchHHHHHHHHHHHhccccC-cEEEecCcchhHHHHHHHHHHHhcCCceecccc
Confidence 888887766555555554444 444 55554332 3445667788998775554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.29 E-value=0.00067 Score=62.92 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=89.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH-HHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-AVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~-~~L~~agi~~a~~viv 611 (791)
++-++|+|.+|+.+|+.|. +.|++|.+.|.++++.+++++.+..+. .++ |+. +++|.+++
T Consensus 2 kIgiIGlG~MG~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~~~~~----~~~~e~~-----~~~d~ii~ 62 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVSDRNPEAIADVIAAGAETA----STAKAIA-----EQCDVIIT 62 (161)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----SSHHHHH-----HHCSEEEE
T ss_pred EEEEEehhHHHHHHHHHHH----------HCCCeEEEEeCCcchhHHHHHhhhhhc----ccHHHHH-----hCCCeEEE
Confidence 3779999999999999998 899999999999999999998776542 233 333 45889999
Q ss_pred EeCCHHHHHHHHH----HHHHhCCCCcEEEEecC------hhhHHHHHHCCCCeEEcCcHHHHHHHHHH--HHhhcCCCh
Q 003861 612 MYTDKKRTIEAVQ----RLRLAFPAIPIYARAQD------MMHLLDLKKAGATDAILENAETSLQLGSK--LLKGFGVMS 679 (791)
Q Consensus 612 ~~~~d~~n~~~~~----~ar~l~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~~~~~~~la~~--~l~~l~~~~ 679 (791)
+.++++....+.. .+....|+ .+++-..+ .+..+.+++.|++.+=.|-. .+..-|+. +.-..|=+.
T Consensus 63 ~v~~~~~v~~v~~~~~~~~~~~~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~-gg~~~a~~g~l~~~~gG~~ 140 (161)
T d1vpda2 63 MLPNSPHVKEVALGENGIIEGAKPG-TVLIDMSSIAPLASREISDALKAKGVEMLDAPVS-GGEPKAIDGTLSVMVGGDK 140 (161)
T ss_dssp CCSSHHHHHHHHHSTTCHHHHCCTT-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE-SHHHHHHHTCEEEEEESCH
T ss_pred EcCCHHHHHHHHhCCcchhhccCCC-CEEEECCCCCHHHHHHHHHHHHHcCCceeccccc-CChhHHhcCCeEEEEcCCH
Confidence 9988765444432 34444554 55554443 23556677889988766642 23333332 111122245
Q ss_pred HHHHHHHHHHhc
Q 003861 680 DDVTFLRQLVRN 691 (791)
Q Consensus 680 ~~~~~l~~~~~~ 691 (791)
+..+....+++.
T Consensus 141 ~~~~~~~~il~~ 152 (161)
T d1vpda2 141 AIFDKYYDLMKA 152 (161)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.22 E-value=0.0011 Score=61.58 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=79.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+|-++|.|.+|..+|+.|. +.|++|.+.|.++++.+.+.+.+.... .+-.+. +..+|.++++
T Consensus 3 kIg~IGlG~MG~~iA~~L~----------~~g~~v~~~d~~~~~~~~~~~~~~~~~---~~~~e~-----~~~~diii~~ 64 (162)
T d3cuma2 3 QIAFIGLGHMGAPMATNLL----------KAGYLLNVFDLVQSAVDGLVAAGASAA---RSARDA-----VQGADVVISM 64 (162)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHTTCEEC---SSHHHH-----HTSCSEEEEC
T ss_pred EEEEEEEHHHHHHHHHHHH----------HCCCeEEEEECchhhhhhhhhhhcccc---chhhhh-----ccccCeeeec
Confidence 5889999999999999998 899999999999999998887754322 111222 3568999999
Q ss_pred eCCHHHHHHHHH----HHHHhCCCCcEEEEecCh------hhHHHHHHCCCCeEEcCc
Q 003861 613 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILEN 660 (791)
Q Consensus 613 ~~~d~~n~~~~~----~ar~l~p~~~iiara~~~------~~~~~L~~~Gad~Vi~p~ 660 (791)
..+++....+.. ....+.|+ .+|.-..+- +..+.+++.|++.+=.|-
T Consensus 65 v~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv 121 (162)
T d3cuma2 65 LPASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAPV 121 (162)
T ss_dssp CSCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred ccchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcEEeccc
Confidence 998865554433 23445554 566655543 566778888998876553
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.94 E-value=0.0003 Score=65.05 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++++|||||..|+.+|+.++ ..|..|+|.|.||-+.-++.-+|+++..- +++ ++.+|.+|
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~r----------g~Ga~V~V~E~DPi~alqA~mdGf~v~~~----~~a-----~~~aDi~v 83 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMK----------GLGARVYITEIDPICAIQAVMEGFNVVTL----DEI-----VDKGDFFI 83 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSCHHHHHHHHTTTCEECCH----HHH-----TTTCSEEE
T ss_pred CCEEEEecccccchhHHHHHH----------hCCCEEEEEecCchhhHHHHhcCCccCch----hHc-----cccCcEEE
Confidence 458999999999999999999 89999999999998877777788887543 222 47889999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEecC---hhhHHHHHHC
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD---MMHLLDLKKA 651 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~~---~~~~~~L~~~ 651 (791)
.+|++. |+......+.+..+ -|++.+-. +-+.+.|++.
T Consensus 84 TaTGn~--~vI~~~h~~~MKdg-aIl~N~GHfd~EIdv~~L~~~ 124 (163)
T d1v8ba1 84 TCTGNV--DVIKLEHLLKMKNN-AVVGNIGHFDDEIQVNELFNY 124 (163)
T ss_dssp ECCSSS--SSBCHHHHTTCCTT-CEEEECSSTTTSBCHHHHHTS
T ss_pred EcCCCC--ccccHHHHHHhhCC-eEEEeccccchhhhhHHHHhC
Confidence 999884 33334456665433 57776653 3344445443
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00057 Score=63.35 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
-++++|||||+.|+.+|+.++ ..|.+|++.|.||.+.-++.-.|+.+..- ++. +..+|.++
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~r----------g~G~~V~v~e~dp~~al~A~~dG~~v~~~----~~a-----~~~adivv 84 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALR----------GFGARVIITEIDPINALQAAMEGYEVTTM----DEA-----CQEGNIFV 84 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEECCH----HHH-----TTTCSEEE
T ss_pred CCEEEEeccccccHHHHHHHH----------hCCCeeEeeecccchhHHhhcCceEeeeh----hhh-----hhhccEEE
Confidence 457999999999999999999 89999999999998877777778877631 222 46789888
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKK 650 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~---~~~~~~~L~~ 650 (791)
.+|++. ++.-....+.+.++ -|++.+- ++-+.+.|++
T Consensus 85 taTGn~--~vI~~eh~~~MKdg-aIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 85 TTTGCI--DIILGRHFEQMKDD-AIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp ECSSCS--CSBCHHHHTTCCTT-EEEEECSSSTTSBCHHHHHH
T ss_pred ecCCCc--cchhHHHHHhccCC-eEEEEeccccceecHHHHhh
Confidence 888873 23334455666544 4666543 3344444444
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.0014 Score=59.90 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhc-------------------------
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKL------------------------- 583 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~------------------------- 583 (791)
.++++|+|.|+.|..-++.|. +.|.+|++|.. +++..+...+.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll----------~~GA~VtVvap~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLM----------PTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTK 82 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHG----------GGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCHHHHHHHHhccchhhhhhhhhhhhhhcchhhhhcc
Confidence 457999999999999999998 89999999954 34433222211
Q ss_pred --CCCEEEccCCCHHHHH-hcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE-EecChh
Q 003861 584 --GFPILYGDASRPAVLL-SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-RAQDMM 643 (791)
Q Consensus 584 --~~~~v~GD~t~~~~L~-~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia-ra~~~~ 643 (791)
....+. ...+++.|. ...++.++.|+++++|.+.|..+...+|+.+.. .|.+ .+++++
T Consensus 83 ~~~~~~i~-~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~~~~-~i~VNv~D~P~ 144 (150)
T d1kyqa1 83 NEIYEYIR-SDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGK-QQLVNVADKPD 144 (150)
T ss_dssp CCCSEEEC-SSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCT-TSEEEETTCGG
T ss_pred ccceEEEe-cccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHhccC-CCEEEeCCCcc
Confidence 122222 222333333 334567888888898889999999999987532 4444 334443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.69 E-value=0.0022 Score=59.61 Aligned_cols=92 Identities=24% Similarity=0.295 Sum_probs=61.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|..+|+.|. +.|+ +|.++|.|++..+.+.+.+..-..- ++.+ .....++|.++
T Consensus 3 ~I~IIG~G~mG~sla~~L~----------~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~dlIi 67 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLR----------RSGFKGKIYGYDINPESISKAVDLGIIDEGT--TSIA---KVEDFSPDFVM 67 (171)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--SCGG---GGGGTCCSEEE
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCeEEEEEECChHHHHHHHHhhcchhhh--hhhh---hhhcccccccc
Confidence 5899999999999999998 6675 6888999999999998876532211 1221 12234789998
Q ss_pred EEeCCHHHHHHHHHHHHH-hCCCCcEEEEecC
Q 003861 611 IMYTDKKRTIEAVQRLRL-AFPAIPIYARAQD 641 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~-l~p~~~iiara~~ 641 (791)
++++.+. ...+...++. .+++ .++.-+.+
T Consensus 68 la~p~~~-~~~vl~~l~~~~~~~-~ii~d~~s 97 (171)
T d2g5ca2 68 LSSPVRT-FREIAKKLSYILSED-ATVTDQGS 97 (171)
T ss_dssp ECSCHHH-HHHHHHHHHHHSCTT-CEEEECCS
T ss_pred ccCCchh-hhhhhhhhhcccccc-cccccccc
Confidence 8888543 3333344444 4544 55554443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.63 E-value=0.0061 Score=56.95 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=74.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-----EEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-----ILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-----~v~GD~t~~~~L~~agi~~a~ 607 (791)
++-|+|.|++|..+++.|. +.|++|.+.|.++++.+++.+.+.. ......+..+... .+.+++
T Consensus 3 kIGvIGlG~MG~~ma~~L~----------~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 70 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIA----------EKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAA--SLKKPR 70 (178)
T ss_dssp SEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHH--HBCSSC
T ss_pred EEEEEeehHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHH--hcccce
Confidence 4789999999999999998 8999999999999999998765532 2233333333333 334455
Q ss_pred EEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEecC------hhhHHHHHHCCCCeEEcCc
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLA-FPAIPIYARAQD------MMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l-~p~~~iiara~~------~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.....+.............. .++ .+++...+ .+..+.+.+.|+..+-.|-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv 129 (178)
T d1pgja2 71 KALILVQAGAATDSTIEQLKKVFEKG-DILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI 129 (178)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHCCTT-CEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred EEEEeecCcchhhhhhhhhhhhcccc-ceecccCccchhHHHHHHHHHhhcceeEecccc
Confidence 5555555543333333344443 443 55554443 3555667778887765554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.60 E-value=0.006 Score=58.49 Aligned_cols=106 Identities=21% Similarity=0.152 Sum_probs=77.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++|+|-|+|.+|+.+++.|. +.|.+|++.|.|++.++...+.+...+ +.++.|. .++|.++-
T Consensus 28 k~v~IqG~G~VG~~~A~~L~----------~~Gakvvv~d~d~~~~~~~~~~g~~~~----~~~~~~~----~~~DI~iP 89 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAA----------EAGAQLLVADTDTERVAHAVALGHTAV----ALEDVLS----TPCDVFAP 89 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCEEC----CGGGGGG----CCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEecchHHHHHHHHhhccccc----Ccccccc----ccceeeec
Confidence 57999999999999999999 899999999999999998888776654 2344443 57897775
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecC-----hhhHHHHHHCCCCeEEcCcHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQD-----MMHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~-----~~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+...+..|-. .+++++ +++|+..-| ++..+.|++-|+ .+.|...
T Consensus 90 cA~~~~I~~~---~a~~i~--ak~i~e~AN~p~~~~~~~~~L~~rgI--~~iPD~l 138 (201)
T d1c1da1 90 CAMGGVITTE---VARTLD--CSVVAGAANNVIADEAASDILHARGI--LYAPDFV 138 (201)
T ss_dssp CSCSCCBCHH---HHHHCC--CSEECCSCTTCBCSHHHHHHHHHTTC--EECCHHH
T ss_pred ccccccccHH---HHhhhh--hheeeccCCCCcchhhHHHHhcccce--EEEehhh
Confidence 5544333333 455554 677775543 234568899888 5678865
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.37 E-value=0.0072 Score=55.04 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=60.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-CCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.++|+|++|+.+++.|.+ +.++++.+.|.++++.+++.++ +..+. -|.. .+.++|.++.
T Consensus 2 kI~fIG~G~MG~ai~~~l~~---------~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~~--------~v~~~Div~l 63 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVK---------QGGYRIYIANRGAEKRERLEKELGVETS-ATLP--------ELHSDDVLIL 63 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------HCSCEEEEECSSHHHHHHHHHHTCCEEE-SSCC--------CCCTTSEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHH---------CCCCcEEEEeCChhHHHHhhhhcccccc-cccc--------cccccceEEE
Confidence 36789999999999998872 3348999999999999998764 55443 2211 2577899988
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
++.. .. +-..++++.+.-+++...-.-...+.+
T Consensus 64 avkP-~~---~~~v~~~l~~~~~~viS~~ag~~~~~l 96 (152)
T d1yqga2 64 AVKP-QD---MEAACKNIRTNGALVLSVAAGLSVGTL 96 (152)
T ss_dssp CSCH-HH---HHHHHTTCCCTTCEEEECCTTCCHHHH
T ss_pred ecCH-HH---HHHhHHHHhhcccEEeecccCCCHHHH
Confidence 8863 22 122345554443444444333333444
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.33 E-value=0.002 Score=58.96 Aligned_cols=77 Identities=22% Similarity=0.172 Sum_probs=55.8
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-|+|+|.+|+.+++.|. +.|+++++.|.+++...+.+..+..+. . +-.|+ ++++|.++++
T Consensus 2 kIgiIG~G~mG~~ia~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~-~--~~~e~-----~~~~diIi~~ 63 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLR----------SRGVEVVTSLEGRSPSTIERARTVGVT-E--TSEED-----VYSCPVVISA 63 (152)
T ss_dssp EEEEESCSHHHHHHHHHHH----------HTTCEEEECCTTCCHHHHHHHHHHTCE-E--CCHHH-----HHTSSEEEEC
T ss_pred EEEEEcHHHHHHHHHHHHH----------HCCCeEEEEcCchhHHHHHhhhccccc-c--cHHHH-----HhhcCeEEEE
Confidence 3778999999999999998 889999999988887766665555543 2 22333 4679999999
Q ss_pred eCCHHHHHHHHHHHHH
Q 003861 613 YTDKKRTIEAVQRLRL 628 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~ 628 (791)
.+++. ....+..+..
T Consensus 64 v~~~~-~~~~~~~~~~ 78 (152)
T d1i36a2 64 VTPGV-ALGAARRAGR 78 (152)
T ss_dssp SCGGG-HHHHHHHHHT
T ss_pred ecCch-HHHHHHhhcc
Confidence 88753 3444444333
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0041 Score=51.88 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=59.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|+|..|+++|+.|. +.|.+|.+.|.+++ ..+.+ +.+..+..++. +++.+ .++|.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~----------~~g~~v~~~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~d~ 67 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFL----------ARGVTPRVMDTRMTPPGLDKL-PEAVERHTGSL-NDEWL-----MAADL 67 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHH----------HTTCCCEEEESSSSCTTGGGS-CTTSCEEESBC-CHHHH-----HHCSE
T ss_pred CCEEEEEeECHHHHHHHHHHH----------HCCCEEEEeeCCcCchhHHHH-hhccceeeccc-chhhh-----ccCCE
Confidence 347999999999999999998 89999999999665 33333 34566666654 34443 46687
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 609 VMIMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
+|+..+=+. |-.....|++.+ ++||
T Consensus 68 vi~SPGi~~-~~~~~~~a~~~g--i~ii 92 (93)
T d2jfga1 68 IVASPGIAL-AHPSLSAAADAG--IEIV 92 (93)
T ss_dssp EEECTTSCT-TSHHHHHHHHTT--CEEE
T ss_pred EEECCCCCC-CCHHHHHHHHcC--CCeE
Confidence 777655443 334566677765 5654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.80 E-value=0.011 Score=53.78 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=65.2
Q ss_pred EEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 534 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 534 viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
+-++|+|.+|+.+++.|. +.|+++.+.|.++++.+++.+ .|..+.. +..++. +++|.|+++
T Consensus 3 Ig~IG~G~mG~al~~~l~----------~~~~~i~v~~r~~~~~~~l~~~~g~~~~~---~~~~~~-----~~~dvIila 64 (152)
T d2ahra2 3 IGIIGVGKMASAIIKGLK----------QTPHELIISGSSLERSKEIAEQLALPYAM---SHQDLI-----DQVDLVILG 64 (152)
T ss_dssp EEEECCSHHHHHHHHHHT----------TSSCEEEEECSSHHHHHHHHHHHTCCBCS---SHHHHH-----HTCSEEEEC
T ss_pred EEEEeccHHHHHHHHHHH----------hCCCeEEEEcChHHhHHhhccccceeeec---hhhhhh-----hccceeeee
Confidence 678999999999999998 789999999999999988754 5655431 223333 479988888
Q ss_pred eCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCC
Q 003861 613 YTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGA 653 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Ga 653 (791)
...+.. -..++++.++..++.-+..-...+.-+.++-
T Consensus 65 vkp~~~----~~vl~~l~~~~~iis~~agi~~~~l~~~l~~ 101 (152)
T d2ahra2 65 IKPQLF----ETVLKPLHFKQPIISMAAGISLQRLATFVGQ 101 (152)
T ss_dssp SCGGGH----HHHHTTSCCCSCEEECCTTCCHHHHHHHHCT
T ss_pred cchHhH----HHHhhhcccceeEecccccccHHHHHhhhcc
Confidence 854321 1224667777556655444333333333343
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.75 E-value=0.0045 Score=57.38 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |..+++.+.+...+..|.++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak----------~~G~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~~~~~~d~vi 96 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISK----------AMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYFDTFDLIV 96 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSCSCEEEEE
T ss_pred CCEEEEECCCCcchhHHHHhh----------hccccccccccchhHHHHhhccCCcEEe-eccchHHHHHhhhcccceEE
Confidence 457999999999999999887 7899999999999999999999976554 33333333444457789888
Q ss_pred EEeCC
Q 003861 611 IMYTD 615 (791)
Q Consensus 611 v~~~~ 615 (791)
.+.+.
T Consensus 97 ~~~~~ 101 (168)
T d1piwa2 97 VCASS 101 (168)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 77554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.75 E-value=0.015 Score=53.50 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=59.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-ccCCCH------HHHHhcC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-GDASRP------AVLLSAG 602 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-GD~t~~------~~L~~ag 602 (791)
..+.++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|..... -|..+. +.+++..
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak----------~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAK----------AYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEEcccccchhhHhhHh----------hhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 3457999999999999999998 7899999999999999999998876543 343322 2233333
Q ss_pred CCCCcEEEEEeCCHH
Q 003861 603 ITSPKAVMIMYTDKK 617 (791)
Q Consensus 603 i~~a~~viv~~~~d~ 617 (791)
=..+|.++-+++++.
T Consensus 96 g~g~D~vid~~g~~~ 110 (170)
T d1e3ja2 96 GDLPNVTIDCSGNEK 110 (170)
T ss_dssp SSCCSEEEECSCCHH
T ss_pred ccCCceeeecCCChH
Confidence 467898888888754
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.73 E-value=0.0064 Score=58.22 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=54.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc-----------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA----------- 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a----------- 601 (791)
.+.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+...+.. +....+.|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la----------~~g~~V~g~D~n~~~i~~ln~g~~p~~--e~~~~~~l~~~~~~~~~~~~~~ 69 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLS----------ARGHEVIGVDVSSTKIDLINQGKSPIV--EPGLEALLQQGRQTGRLSGTTD 69 (202)
T ss_dssp EEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHTTCCSSC--CTTHHHHHHHHHHTTCEEEESC
T ss_pred EEEEECCCHhHHHHHHHHH----------hCCCcEEEEeCCHHHHHHhcccCCccc--chhhhhhhhhhhcccccccCCC
Confidence 3789999999999999998 899999999999999999987655543 33334444221
Q ss_pred ---CCCCCcEEEEEeCC
Q 003861 602 ---GITSPKAVMIMYTD 615 (791)
Q Consensus 602 ---gi~~a~~viv~~~~ 615 (791)
.++++|.++++.+.
T Consensus 70 ~~~~i~~~d~i~i~VpT 86 (202)
T d1mv8a2 70 FKKAVLDSDVSFICVGT 86 (202)
T ss_dssp HHHHHHTCSEEEECCCC
T ss_pred HHHHHhhCCEEEEecCc
Confidence 15578999988864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.005 Score=53.29 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC-CCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI-TSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi-~~a~~v 609 (791)
..++.|+|.|+.|+-++..-+ +.|+++.+.|.|++. .+.......+.||..|.+.+.+..- .++|.+
T Consensus 11 ~~kigIlGgGQL~rMla~aA~----------~lG~~v~v~d~~~~~--PA~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQ----------RLGVEVIAVDRYADA--PAMHVAHRSHVINMLDGDALRRVVELEKPHYI 78 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHH----------TTTCEEEEEESSTTC--GGGGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHH----------HCCCEEEEEcCCCCC--chhhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence 346999999999999999998 899999999998884 2344456788999999999987643 467855
Q ss_pred EEEeCCHHHHHHHHHHH
Q 003861 610 MIMYTDKKRTIEAVQRL 626 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~a 626 (791)
+.+.+..+..+...+
T Consensus 79 --T~E~EnI~~~~L~~l 93 (111)
T d1kjqa2 79 --VPEIEAIATDMLIQL 93 (111)
T ss_dssp --EECSSCSCHHHHHHH
T ss_pred --EEEecCcCHHHHHHH
Confidence 566555555554444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0021 Score=59.02 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=68.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC----EEEccCCCHHHHHhcCCCCCcE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP----ILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~----~v~GD~t~~~~L~~agi~~a~~ 608 (791)
+|.|+|.|.+|..++..|. +.|++|.+++.+++..+.....+.. ...-...+++.+ +.+|.
T Consensus 2 kI~IiGaG~iG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D~ 66 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALC----------KQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL-----ATSDL 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH-----HTCSE
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhh-----cccce
Confidence 5899999999999999998 8999999999999876544322111 111122344444 46899
Q ss_pred EEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHC
Q 003861 609 VMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 609 viv~~~~d~~n~~~~~~ar~-l~p~~~iiara~~~~~~~~L~~~ 651 (791)
+++++..... ......++. .+++..|+...|-..+.+.+.+.
T Consensus 67 iii~vka~~~-~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~~ 109 (167)
T d1ks9a2 67 LLVTLKAWQV-SDAVKSLASTLPVTTPILLIHNGMGTIEELQNI 109 (167)
T ss_dssp EEECSCGGGH-HHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTC
T ss_pred EEEeecccch-HHHHHhhccccCcccEEeeccCcccHHHHHhhc
Confidence 9999887433 333444444 46677788777766655555443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.66 E-value=0.01 Score=53.85 Aligned_cols=38 Identities=32% Similarity=0.632 Sum_probs=34.0
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 578 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~ 578 (791)
-+++.|+| .|.+|+.+++.|. +.|++|.+.|.+++...
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~----------~~G~~V~~~d~~~~~~~ 47 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLR----------ASGYPISILDREDWAVA 47 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHH----------TTTCCEEEECTTCGGGH
T ss_pred CCeEEEEcCCCHHHHHHHHHHH----------HcCCCcEeccccccccc
Confidence 35899999 8999999999998 89999999999887644
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.58 E-value=0.0098 Score=49.93 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=66.3
Q ss_pred cCCCCEEEeCCChhH-HHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCC
Q 003861 529 EGSEPVVIVGFGQMG-QVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSAGITSP 606 (791)
Q Consensus 529 ~~~~~viI~G~G~~G-~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a 606 (791)
+..+++-++|-|..| ..+|+.|. ++|++|..-|.. .+..+.+++.|..+..|+..+ +++++
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~----------~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~-------~i~~~ 68 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILL----------NEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEE-------HIEGA 68 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHH----------HHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGG-------GGTTC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHH----------hCCCEEEEEeCCCChhhhHHHHCCCeEEECCccc-------cCCCC
Confidence 356789999999999 55799998 899999999986 455788888999988876542 34578
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 607 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 607 ~~viv~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
|.+|....=.++|.+. ..||+.+ ++|+
T Consensus 69 d~vV~S~AI~~~npel-~~A~~~g--ipii 95 (96)
T d1p3da1 69 SVVVVSSAIKDDNPEL-VTSKQKR--IPVI 95 (96)
T ss_dssp SEEEECTTSCTTCHHH-HHHHHTT--CCEE
T ss_pred CEEEECCCcCCCCHHH-HHHHHcC--CCEE
Confidence 8887766556677774 4577764 5554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.44 E-value=0.022 Score=56.72 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=57.3
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh--------hHHHHHhcCCCEEEccCCCHHHHHh
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--------VVKESRKLGFPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~--------~v~~~~~~~~~~v~GD~t~~~~L~~ 600 (791)
.+++|+|.|. |.+|+.+++.|. +.|++|++++.++. ......+.+..++.||.+|++.+.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~----------~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~ 71 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASI----------SLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVD 71 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhh
Confidence 3567999996 999999999998 78999999987643 2334456789999999999999987
Q ss_pred cCCCCCcEEEEEe
Q 003861 601 AGITSPKAVMIMY 613 (791)
Q Consensus 601 agi~~a~~viv~~ 613 (791)
+ ...++.++.+.
T Consensus 72 ~-~~~~~~~~~~~ 83 (312)
T d1qyda_ 72 A-LKQVDVVISAL 83 (312)
T ss_dssp H-HTTCSEEEECC
T ss_pred h-ccCcchhhhhh
Confidence 6 45566666554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.026 Score=52.02 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=58.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEc-cCCCHHHH-Hh---cCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYG-DASRPAVL-LS---AGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~G-D~t~~~~L-~~---agi~ 604 (791)
.+.++|+|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+.- +..+++.. +. -.=.
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~----------~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAK----------AMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCccHHHHHHHHH----------HcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCC
Confidence 457999999999999999998 7887 7999999999999999998876553 33333322 21 1224
Q ss_pred CCcEEEEEeCCHH
Q 003861 605 SPKAVMIMYTDKK 617 (791)
Q Consensus 605 ~a~~viv~~~~d~ 617 (791)
.+|.++-+++++.
T Consensus 97 g~Dvvid~~G~~~ 109 (171)
T d1pl8a2 97 KPEVTIECTGAEA 109 (171)
T ss_dssp CCSEEEECSCCHH
T ss_pred CceEEEeccCCch
Confidence 7898888888754
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.22 E-value=0.037 Score=50.77 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=72.0
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+|+|.+|+. ....+.+ ..+.+++++|.|+++.+.+.+ .+....+.|.. +.++ ++.|+|+
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~ll~----~~iD~V~ 67 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQ---------WPDIELVLCTRNPKVLGTLATRYRVSATCTDYR--DVLQ----YGVDAVM 67 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTT---------STTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT--GGGG----GCCSEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHh---------CCCcEEEEEECCHHHHHHHHHhcccccccccHH--Hhcc----cccceec
Confidence 4789999999976 5677762 557788999999999888765 45554554443 3453 3689999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
++++++. -...+..+-+.+ .+|++. +.+.++.+.+ ++.|....+.
T Consensus 68 I~tp~~~-H~~~~~~al~~g--k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (167)
T d1xeaa1 68 IHAATDV-HSTLAAFFLHLG--IPTFVDKPLAASAQECENLYELAEKHHQPLYVG 119 (167)
T ss_dssp ECSCGGG-HHHHHHHHHHTT--CCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccc-cccccccccccc--cccccCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 9988753 455555555554 467774 4565555555 4556655443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.17 E-value=0.027 Score=53.11 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=60.1
Q ss_pred cCCC-CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc
Q 003861 529 EGSE-PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 529 ~~~~-~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a 601 (791)
+.++ .++|.| -|.+|+.+++.|. ++|.+|++++.|+++.+.+.+ ........|.+|++.++++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLA----------GEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEA 89 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH----------hhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHH
Confidence 3454 566666 6999999999998 899999999999998766543 4567888999999999876
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
++++|.+|-+.+
T Consensus 90 -~~~iDilin~Ag 101 (191)
T d1luaa1 90 -VKGAHFVFTAGA 101 (191)
T ss_dssp -TTTCSEEEECCC
T ss_pred -hcCcCeeeecCc
Confidence 578998776544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=95.09 E-value=0.029 Score=57.61 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=67.2
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH--HHHH-hcCCCEEEccCCCHHHHHhcCCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESR-KLGFPILYGDASRPAVLLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v--~~~~-~~~~~~v~GD~t~~~~L~~agi~~ 605 (791)
.++.|+|.|. |.+|+.+++.|. +.|++|+++-.|++.. +.+. ..+..+++||.+|++.+.++-.+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~ 71 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAA----------AVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEG 71 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHH----------HTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTT
T ss_pred CCCEEEEECCChHHHHHHHHHHH----------hCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcC
Confidence 4678999986 999999999998 7899999998776653 3333 357899999999865544444566
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHHHhCCCCcEEE
Q 003861 606 PKAVMIMYTDK-----KRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 606 a~~viv~~~~d-----~~n~~~~~~ar~l~p~~~iia 637 (791)
++.+.+..+.. .....++..+++.+..-.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~agv~~~v~~ 108 (350)
T d1xgka_ 72 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIY 108 (350)
T ss_dssp CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CceEEeecccccchhhhhhhHHHHHHHHhCCCceEEE
Confidence 77666655432 222335566677664323333
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.06 E-value=0.033 Score=51.81 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=63.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEc--cCC--CHHHHHhcCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYG--DAS--RPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~G--D~t--~~~~L~~agi~ 604 (791)
..+.|+|.|.|.+|...++.++ ..| .+|+++|.++++.+.+++.|...+.- |.. ..+..+.-+=.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak----------~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCK----------SAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECCCchhHHHHHHHH----------HcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccc
Confidence 3557999999999999999998 777 58999999999999999998776652 222 23334444556
Q ss_pred CCcEEEEEeCCHHHHHHHH
Q 003861 605 SPKAVMIMYTDKKRTIEAV 623 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~ 623 (791)
.+|.++.+++.........
T Consensus 99 G~d~vi~~~g~~~~~~~a~ 117 (176)
T d1d1ta2 99 NVGYTFEVIGHLETMIDAL 117 (176)
T ss_dssp CCCEEEECSCCHHHHHHHH
T ss_pred cceEEEEeCCchHHHHHHH
Confidence 7999999998865544433
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.05 E-value=0.022 Score=52.90 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=66.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEE----ccCCCHHHHHhcCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILY----GDASRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~----GD~t~~~~L~~agi~ 604 (791)
..+.|+|.|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. .|..-+++.++.+=.
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak----------~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCK----------AAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCchhHHHHHHHH----------HcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 3557999999999999999998 6775 799999999999999999977654 222335666766667
Q ss_pred CCcEEEEEeCCHHHHHHHHHH
Q 003861 605 SPKAVMIMYTDKKRTIEAVQR 625 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ 625 (791)
.+|.++-++++..........
T Consensus 97 G~d~vid~~g~~~~~~~~~~~ 117 (174)
T d1p0fa2 97 GVDYAVECAGRIETMMNALQS 117 (174)
T ss_dssp CBSEEEECSCCHHHHHHHHHT
T ss_pred CCcEEEEcCCCchHHHHHHHH
Confidence 899999999886544443333
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.04 E-value=0.034 Score=50.21 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~~ 600 (791)
+.++.|+|.|.+|..++..|. ..| .+++++|.|+++.+- +++ .+...+. ..|.+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~----------~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~~---- 68 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMA----------QQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEYS---- 68 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCGG----
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccHH----
Confidence 457999999999999999987 444 589999999987432 221 2222222 12332
Q ss_pred cCCCCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 601 AGITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 601 agi~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
.+.+||.++++.+.. ..|.. ++..+++.+|+. ++..+.||-+
T Consensus 69 -~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~a-ivivvtNPvd 125 (146)
T d1ez4a1 69 -DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDG-IFLVAANPVD 125 (146)
T ss_dssp -GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCS-EEEECSSSHH
T ss_pred -HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCc-EEEEeCCccH
Confidence 357899888876531 22333 344455667764 4444555553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.01 E-value=0.01 Score=55.68 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=45.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a 601 (791)
...+|+|+|.|-.|.+.++.-. ..|..|.++|.++++.+++++.+-..+.-+..+++.++.+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~----------~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~ 89 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAK----------RLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETA 89 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCSTTHHHHHHTTCEECCC-----------
T ss_pred CCcEEEEEcCcHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhhcceEEEecccccccccc
Confidence 3568999999999999999887 8999999999999999999998877776555555555443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.83 E-value=0.016 Score=56.48 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.++++|-|+|.+|+.+++.|. +.|..+++.|.|++.++.+.+ .+...+ ++.+.| -.++|.+
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~----------~~Gakvv~~d~~~~~~~~~~~~~g~~~~----~~~~~~----~~~cDIl 100 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLN----------TEGAKLVVTDVNKAAVSAAVAEEGADAV----APNAIY----GVTCDIF 100 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCCEEC----CGGGTT----TCCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEeecccHHHHHHHHHhcCCccc----CCcccc----cccccEe
Confidence 458999999999999999998 899999999999999887764 444332 222333 2579987
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHCCCCeEEcCcHH
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiara~-----~~~~~~~L~~~Gad~Vi~p~~~ 662 (791)
+=+.-.+..|-. ++.++. +++|+..- +++..+.|++-|+ ++.|...
T Consensus 101 ~PcA~~~~I~~~---~~~~l~--ak~Ive~ANn~~t~~ea~~~L~~rGI--~~iPD~l 151 (230)
T d1leha1 101 APCALGAVLNDF---TIPQLK--AKVIAGSADNQLKDPRHGKYLHELGI--VYAPDYV 151 (230)
T ss_dssp EECSCSCCBSTT---HHHHCC--CSEECCSCSCCBSSHHHHHHHHHHTC--EECCHHH
T ss_pred cccccccccChH---HhhccC--ccEEEecccCCCCCchHHHHHHhhCc--EEEeehh
Confidence 777655443333 355664 67777544 4678888999988 5678753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.023 Score=52.93 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHH-------HHHhcC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPA-------VLLSAG 602 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~-------~L~~ag 602 (791)
.++++|.|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. |.++++ +.+..+
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak----------~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIAR----------SLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITH 97 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTT
T ss_pred CCEEEEECCCccchhheeccc----------ccccccccccccccccccccccccceEEE-eccccchHHHHHHHHHhhC
Confidence 457899999999999999988 7887 799999999999999998865443 333322 333344
Q ss_pred CCCCcEEEEEeCCHH
Q 003861 603 ITSPKAVMIMYTDKK 617 (791)
Q Consensus 603 i~~a~~viv~~~~d~ 617 (791)
-..+|.++-++++..
T Consensus 98 ~~g~Dvvid~vG~~~ 112 (182)
T d1vj0a2 98 GRGADFILEATGDSR 112 (182)
T ss_dssp TSCEEEEEECSSCTT
T ss_pred CCCceEEeecCCchh
Confidence 456899888887743
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.021 Score=56.21 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=56.5
Q ss_pred CCCCEEEe-CCCh-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC--CCEEEccCCCHHHHHh-
Q 003861 530 GSEPVVIV-GFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLS- 600 (791)
Q Consensus 530 ~~~~viI~-G~G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~--~~~v~GD~t~~~~L~~- 600 (791)
.+++++++ |.++ +|+++|+.|. ++|.+|++.|.|+++.++..+ .+ ...+.+|.+|++..++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la----------~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFA----------KLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 55565555 7755 9999999998 899999999999998766543 33 5577899999987764
Q ss_pred -----cCCCCCcEEEEEeC
Q 003861 601 -----AGITSPKAVMIMYT 614 (791)
Q Consensus 601 -----agi~~a~~viv~~~ 614 (791)
....+.|.+|-..+
T Consensus 75 ~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 75 AKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HHHHHHHTCCCSEEEECCC
T ss_pred HHHHHHHcCCCceeEeecc
Confidence 24557787766553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.69 E-value=0.036 Score=51.47 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEE--ccCCCHHHHHh-cCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILY--GDASRPAVLLS-AGITS 605 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~--GD~t~~~~L~~-agi~~ 605 (791)
..+.|+|+|.|.+|...++.++ ..|. +|+++|.++++.+.+++.|...+. -|....+.+.+ -+=+.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak----------~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAK----------LRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHH----------TTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcCCcchhhhhhhhh----------cccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 3568999999999999999998 7886 799999999999999999865432 22222333333 34456
Q ss_pred CcEEEEEeCCHH
Q 003861 606 PKAVMIMYTDKK 617 (791)
Q Consensus 606 a~~viv~~~~d~ 617 (791)
+|.++-+++..+
T Consensus 97 ~D~vid~~g~~~ 108 (174)
T d1jqba2 97 VDRVIMAGGGSE 108 (174)
T ss_dssp EEEEEECSSCTT
T ss_pred cceEEEccCCHH
Confidence 999988888753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.044 Score=50.27 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
..++|+|.|.|.+|...++.++ ..|.+++++|.++++.+.+++.|...+. |..+++... ...+.+|.+
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak----------~~Ga~~i~~~~~~~~~~~a~~lGad~~i-~~~~~~~~~-~~~~~~D~v 97 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAH----------AMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMA-AHLKSFDFI 97 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHH-TTTTCEEEE
T ss_pred CCCEEEEeccchHHHHHHHHhh----------cccccchhhccchhHHHHHhccCCcEEE-ECchhhHHH-HhcCCCcee
Confidence 3568999999999999999988 7899999999999999999998877654 666666543 455789999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+-+++..
T Consensus 98 id~~g~~ 104 (168)
T d1uufa2 98 LNTVAAP 104 (168)
T ss_dssp EECCSSC
T ss_pred eeeeecc
Confidence 8888764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.59 E-value=0.058 Score=48.87 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=66.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 612 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~ 612 (791)
++-++|.|++|..+++.|. +.|+.+ +.+.++++.+++.+.+... ....+. +.+++.++.+
T Consensus 2 kIg~IGlG~MG~~ma~~L~----------~~g~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~i~~ 61 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLA----------RRFPTL-VWNRTFEKALRHQEEFGSE----AVPLER-----VAEARVIFTC 61 (156)
T ss_dssp CEEEECCSTTHHHHHHHHH----------TTSCEE-EECSSTHHHHHHHHHHCCE----ECCGGG-----GGGCSEEEEC
T ss_pred eEEEEeHHHHHHHHHHHHH----------hCCCEE-EEeCCHHHHHHHHHHcCCc----cccccc-----ccceeEEEec
Confidence 5789999999999999998 777765 5555555555544432211 122222 2457778888
Q ss_pred eCCHHHHHHHHHHHHHhCCCCcEEEEec--Ch----hhHHHHHHCCCCeEEcCcH
Q 003861 613 YTDKKRTIEAVQRLRLAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILENA 661 (791)
Q Consensus 613 ~~~d~~n~~~~~~ar~l~p~~~iiara~--~~----~~~~~L~~~Gad~Vi~p~~ 661 (791)
..+++.-......+.+...+-.+++... ++ +-.+.+++.|++.+=.|-.
T Consensus 62 ~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVs 116 (156)
T d2cvza2 62 LPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 116 (156)
T ss_dssp CSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred ccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecccc
Confidence 8887665555444444333334555433 22 4445667778888766653
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.38 E-value=0.014 Score=55.20 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=51.7
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCE-----------EEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~-----------v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|.++|..|. +.|++|.+.+.|++.++.+.+.+.+. +... +| ++++
T Consensus 9 KI~ViGaG~wGtAlA~~La----------~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t-~~---l~~a 74 (189)
T d1n1ea2 9 KAVVFGSGAFGTALAMVLS----------KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT-SD---VEKA 74 (189)
T ss_dssp EEEEECCSHHHHHHHHHHH----------TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-SC---HHHH
T ss_pred eEEEECCCHHHHHHHHHHH----------HcCCeEEEEEecHHHHHHHhhcccccccccccccccccccc-hh---hhhc
Confidence 5999999999999999998 88999999999999999886533211 1111 11 2222
Q ss_pred CCCCCcEEEEEeCCH
Q 003861 602 GITSPKAVMIMYTDK 616 (791)
Q Consensus 602 gi~~a~~viv~~~~d 616 (791)
++++|.++++++..
T Consensus 75 -~~~ad~iiiavPs~ 88 (189)
T d1n1ea2 75 -YNGAEIILFVIPTQ 88 (189)
T ss_dssp -HTTCSCEEECSCHH
T ss_pred -cCCCCEEEEcCcHH
Confidence 46789999999875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.056 Score=52.91 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCC-CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CC
Q 003861 530 GSE-PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GI 603 (791)
Q Consensus 530 ~~~-~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi 603 (791)
.++ .++|.|. +.+|+++++.|. ++|.+|++.|.|++..+++.+ .+...+..|.+|++..+++ .+
T Consensus 5 L~GK~~lITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 74 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALH----------ATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 344 4566666 569999999998 899999999999999887764 4577889999999988764 66
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
.+.|.+|-..
T Consensus 75 g~iDilVnnA 84 (244)
T d1pr9a_ 75 GPVDLLVNNA 84 (244)
T ss_dssp CCCCEEEECC
T ss_pred CCceEEEecc
Confidence 7888776543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.33 E-value=0.031 Score=51.15 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=55.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH---hcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL---SAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~---~agi~~a~ 607 (791)
.+.++|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+. |.++++..+ +.. ...+
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak----------~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~-~g~~ 95 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYAR----------AMGLHVAAIDIDDAKLELARKLGASLTV-NARQEDPVEAIQRDI-GGAH 95 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHH-SSEE
T ss_pred CCEEEEeeccccHHHHHHHHH----------HcCCccceecchhhHHHhhhccCccccc-cccchhHHHHHHHhh-cCCc
Confidence 457999999999999999888 7899999999999999999998876543 444444333 323 3355
Q ss_pred EEEEEeCCH
Q 003861 608 AVMIMYTDK 616 (791)
Q Consensus 608 ~viv~~~~d 616 (791)
.++..+...
T Consensus 96 ~~i~~~~~~ 104 (166)
T d1llua2 96 GVLVTAVSN 104 (166)
T ss_dssp EEEECCSCH
T ss_pred ccccccccc
Confidence 566666654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.036 Score=54.28 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=56.7
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc-----
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a----- 601 (791)
.+++ ++|-|. +.+|+.+++.|. ++|++|++.|.|++..++..+ .+...+.+|.+|++..+++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFA----------KEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEAL 72 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 3444 556666 569999999998 899999999999999887654 5788899999999887753
Q ss_pred -CCCCCcEEEEE
Q 003861 602 -GITSPKAVMIM 612 (791)
Q Consensus 602 -gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 73 ~~~g~iDilVnn 84 (242)
T d1ulsa_ 73 AHLGRLDGVVHY 84 (242)
T ss_dssp HHHSSCCEEEEC
T ss_pred HhcCCceEEEEC
Confidence 22467877654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.017 Score=54.85 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=36.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 581 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~ 581 (791)
+++.|+|.|.+|+.+|..+. ..|++|+++|.|++..++++
T Consensus 5 kkvaViGaG~mG~~iA~~~a----------~~G~~V~l~D~~~~~l~~a~ 44 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAA----------ATGHTVVLVDQTEDILAKSK 44 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHH----------hCCCcEEEEECChHHHHHHH
Confidence 58999999999999999998 89999999999999866554
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.063 Score=52.48 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=58.0
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--cCCCEEEccCCCHHHHHhc--CCCCCc
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSPK 607 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--~~~~~v~GD~t~~~~L~~a--gi~~a~ 607 (791)
.++|.|. +-+|+.+++.|. ++|++|++.|.+++..+++.+ .+...+..|.+|++..+++ .+.+.|
T Consensus 7 ~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALH----------ASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred EEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 4566676 469999999998 899999999999998877754 3677899999999988774 567888
Q ss_pred EEEEEe
Q 003861 608 AVMIMY 613 (791)
Q Consensus 608 ~viv~~ 613 (791)
.+|-..
T Consensus 77 ilVnnA 82 (242)
T d1cyda_ 77 LLVNNA 82 (242)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 877543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.27 E-value=0.18 Score=45.87 Aligned_cols=98 Identities=16% Similarity=0.224 Sum_probs=63.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHh----cCCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRK----LGFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~----~~~~~v~GD~t~~~~L~ 599 (791)
.++.+.|+|.|++|..++-.|. ..|. +++++|.+++..+ ++.+ .+.+.+.+. .|.+
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~----------~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~-~d~~--- 84 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISIL----------GKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD-KDYS--- 84 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEEC-SSGG---
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------hcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEec-cchh---
Confidence 4568999999999999999997 4444 7999999988752 2222 233444433 2233
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
...++|.+|++.+. | ..|..+ +..+++.+|+ -++.-+.||-+
T Consensus 85 --~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~-aiiivvtNPvD 141 (160)
T d1i0za1 85 --VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD-CIIIVVSNPVD 141 (160)
T ss_dssp --GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHH
T ss_pred --hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEeCCchH
Confidence 35789988887653 1 345554 5566667776 45555666554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.23 E-value=0.045 Score=50.78 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEcc-C---CCHHHHHhcCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGD-A---SRPAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD-~---t~~~~L~~agi~ 604 (791)
..+.|+|+|.|.+|...++.++ ..|. +|++.|.++++.+.+++.|...+.-. . ...+..+..+=.
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak----------~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCK----------IAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECCChHHHHHHHHHH----------HhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 3457999999999999999998 7887 68889999999999999987766522 1 223344455556
Q ss_pred CCcEEEEEeCCHHH
Q 003861 605 SPKAVMIMYTDKKR 618 (791)
Q Consensus 605 ~a~~viv~~~~d~~ 618 (791)
.+|.++-++++.+.
T Consensus 98 G~d~vie~~G~~~~ 111 (174)
T d1e3ia2 98 GVDYSLDCAGTAQT 111 (174)
T ss_dssp CBSEEEESSCCHHH
T ss_pred CCcEEEEecccchH
Confidence 89999999988654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.044 Score=51.21 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=55.6
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-----------------------HHHHHhcCC
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----------------------VKESRKLGF 585 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-----------------------v~~~~~~~~ 585 (791)
..+++|+|+|.|.-|-+.|..|. ++|++|+++|.+++. .+.+++.|+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la----------~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV 110 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAA----------ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGV 110 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHH----------TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEECccHHHHHHHHHHH----------hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCe
Confidence 45679999999999999999998 899999999998632 223345677
Q ss_pred CEEEccCCCHHHHHhcCCCCCcEEEEEeCCH
Q 003861 586 PILYGDASRPAVLLSAGITSPKAVMIMYTDK 616 (791)
Q Consensus 586 ~~v~GD~t~~~~L~~agi~~a~~viv~~~~d 616 (791)
++..+.--+. ....++|++|++++..
T Consensus 111 ~i~l~~~Vt~-----~~~~~~d~vilAtG~~ 136 (179)
T d1ps9a3 111 TLKLNHTVTA-----DQLQAFDETILASGIP 136 (179)
T ss_dssp EEEESCCCCS-----SSSCCSSEEEECCCEE
T ss_pred EEEeCCEEcc-----cccccceeEEEeecCC
Confidence 7776643332 2457889999998853
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.10 E-value=0.072 Score=43.72 Aligned_cols=84 Identities=23% Similarity=0.304 Sum_probs=63.4
Q ss_pred CEEEeCCChhHH-HHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~G~~G~-~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++-++|-|..|- .+|+.|. ++|++|..=|.++ +..+++++.|.++..|.. + .++.++|.+|
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~----------~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~--~-----~~i~~~d~vV 65 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEF----------SNGNDVYGSNIEETERTAYLRKLGIPIFVPHS--A-----DNWYDPDLVI 65 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEECSSCCHHHHHHHHTTCCEESSCC--T-----TSCCCCSEEE
T ss_pred EEEEEeECHHHHHHHHHHHH----------hCCCeEEEEeCCCChhHHHHHHCCCeEEeeec--c-----cccCCCCEEE
Confidence 456789999997 5889998 8999999999987 567889999999877633 2 2457899887
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEE
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~ii 636 (791)
....=.++|.+ ...||+.+ ++|+
T Consensus 66 ~SsAI~~~npe-l~~A~~~g--Ipv~ 88 (89)
T d1j6ua1 66 KTPAVRDDNPE-IVRARMER--VPIE 88 (89)
T ss_dssp ECTTCCTTCHH-HHHHHHTT--CCEE
T ss_pred EecCcCCCCHH-HHHHHHcC--CCcc
Confidence 76554566776 56777775 5554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.00 E-value=0.015 Score=53.75 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+++|+|.|..|.+.++... ..|..|.++|.++++.+++++..-.-+.--..+++.+++ .+.+||.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~----------~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~aDiv 99 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAV----------GLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLL 99 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEE
T ss_pred CCcEEEEECCChHHHHHHHHHh----------hCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHH-hhccCcEE
Confidence 4568999999999999999998 899999999999999988876432222222344555544 45678866
Q ss_pred EEEe
Q 003861 610 MIMY 613 (791)
Q Consensus 610 iv~~ 613 (791)
|-+.
T Consensus 100 I~aa 103 (168)
T d1pjca1 100 IGAV 103 (168)
T ss_dssp EECC
T ss_pred EEee
Confidence 5553
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.82 E-value=0.057 Score=53.07 Aligned_cols=91 Identities=14% Similarity=0.261 Sum_probs=64.9
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---------HHHHHhcCCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------VKESRKLGFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---------v~~~~~~~~~~v~GD~t~~~~L~ 599 (791)
.|++|+|.|. |.+|+.+++.|. +.|++|++++.++.. .+.....+..++.+|.++.+.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 71 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASL----------DLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLV 71 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHH----------HTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhh
Confidence 3678999997 999999999998 789999999986543 23344567899999999999887
Q ss_pred hcCCCCCcEEEEEeCCH--HHHHHHHHHHHHhCC
Q 003861 600 SAGITSPKAVMIMYTDK--KRTIEAVQRLRLAFP 631 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d--~~n~~~~~~ar~l~p 631 (791)
++ .+.++.++...... .........+++...
T Consensus 72 ~~-~~~~~~vi~~~~~~~~~~~~~~~~a~~~~~~ 104 (307)
T d1qyca_ 72 EA-VKNVDVVISTVGSLQIESQVNIIKAIKEVGT 104 (307)
T ss_dssp HH-HHTCSEEEECCCGGGSGGGHHHHHHHHHHCC
T ss_pred hh-hhhceeeeecccccccchhhHHHHHHHHhcc
Confidence 64 35566666555432 222333445555543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.78 E-value=0.04 Score=52.23 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=54.4
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEE--cCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAF--DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI--D~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.|+|.| -|.+|+.+++.|. ++|++|.++ ..+++..+... .+.+++.+|.++++.+.++ ++++|.+
T Consensus 5 tVlVtGatG~iG~~l~~~Ll----------~~g~~v~v~~~~R~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-~~~~d~v 72 (252)
T d2q46a1 5 TVLVTGASGRTGQIVYKKLK----------EGSDKFVAKGLVRSAQGKEKIG-GEADVFIGDITDADSINPA-FQGIDAL 72 (252)
T ss_dssp EEEEESTTSTTHHHHHHHHH----------HTTTTCEEEEEESCHHHHHHTT-CCTTEEECCTTSHHHHHHH-HTTCSEE
T ss_pred EEEEECCccHHHHHHHHHHH----------HCCCcEEEEEEcCCHHHHHhcc-CCcEEEEeeeccccccccc-cccceee
Confidence 688888 5999999999998 788876665 45676655443 4789999999999999876 5678888
Q ss_pred EEEe
Q 003861 610 MIMY 613 (791)
Q Consensus 610 iv~~ 613 (791)
+.+.
T Consensus 73 i~~a 76 (252)
T d2q46a1 73 VILT 76 (252)
T ss_dssp EECC
T ss_pred EEEE
Confidence 7664
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=93.71 E-value=0.018 Score=52.06 Aligned_cols=95 Identities=8% Similarity=-0.054 Sum_probs=58.3
Q ss_pred EEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeC
Q 003861 535 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 535 iI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~ 614 (791)
=++|.|++|+.+++.|+ +.+....+.+.++++.+++.+.+... ..+.. .-++++|.++++++
T Consensus 3 gfIG~G~mg~~l~~~L~----------~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~-------~~~~~~DiVil~v~ 64 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLK----------DRYEIGYILSRSIDRARNLAEVYGGK-AATLE-------KHPELNGVVFVIVP 64 (153)
T ss_dssp EEESCCHHHHHHHHTTC--------------CCCEECSSHHHHHHHHHHTCCC-CCSSC-------CCCC---CEEECSC
T ss_pred EEEeCcHHHHHHHHHHH----------hCCCEEEEEeCChhhhcchhhccccc-ccchh-------hhhccCcEEEEecc
Confidence 47899999999999996 44444468999999999998875432 12211 23678999999998
Q ss_pred CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHC
Q 003861 615 DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 651 (791)
Q Consensus 615 ~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~ 651 (791)
++.. ...+.++..+-++++........+.+++.
T Consensus 65 d~~i----~~v~~~l~~~~~ivi~~s~~~~~~~l~~~ 97 (153)
T d2i76a2 65 DRYI----KTVANHLNLGDAVLVHCSGFLSSEIFKKS 97 (153)
T ss_dssp TTTH----HHHHTTTCCSSCCEEECCSSSCGGGGCSS
T ss_pred chhh----hHHHhhhcccceeeeecccchhhhhhhhh
Confidence 8642 23345554333566665554444445444
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.68 E-value=0.079 Score=49.21 Aligned_cols=99 Identities=9% Similarity=0.071 Sum_probs=64.6
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCC---EEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFP---ILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~---~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|.+|+..++.+.+ ..+.+++ +.|.|+++.+.+.+ .+.+ -++.| -++.++ -.+.|
T Consensus 3 ki~iIG~G~~g~~~~~~l~~---------~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~---~~~iD 68 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHL---------APNATISGVASRSLEKAKAFATANNYPESTKIHGS--YESLLE---DPEID 68 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHH---------CTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESS--HHHHHH---CTTCC
T ss_pred EEEEEcCCHHHHHHHHHHHh---------CCCCEEEEEEeCCccccccchhccccccceeecCc--HHHhhh---ccccc
Confidence 47899999999999999872 4466777 45999998777654 3332 23433 223443 25789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL 648 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L 648 (791)
+++++++++ .....+..+-+.+ .+|++. +.+.++.+.+
T Consensus 69 ~v~I~tp~~-~h~~~~~~~l~~g--~~v~~EKP~~~~~~e~~~l 109 (184)
T d1ydwa1 69 ALYVPLPTS-LHVEWAIKAAEKG--KHILLEKPVAMNVTEFDKI 109 (184)
T ss_dssp EEEECCCGG-GHHHHHHHHHTTT--CEEEECSSCSSSHHHHHHH
T ss_pred eeeecccch-hhcchhhhhhhcc--ceeecccccccCHHHHHHH
Confidence 999998875 4555566665554 577763 3455555444
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.62 E-value=0.0098 Score=52.04 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-----------HHHHHhcCCCEEEc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----------VKESRKLGFPILYG 590 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-----------v~~~~~~~~~~v~G 590 (791)
.++++|+|.|..|-++|..|. +.|.+|++++.++.. .+.+++.|.+++.+
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~----------~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~ 92 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLA----------EAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLN 92 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHH----------HTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECS
T ss_pred CCcEEEECCcHHHHHHHHHhh----------cccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 368999999999999999998 899999999987652 23345566666554
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.16 Score=43.50 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=69.3
Q ss_pred CCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiar 638 (791)
|.+|.+||.|+...+.+ ++.|+.++.--.+-.+.++.+.-.+.|.+++-..=+ ..-+..+..+|+.+|+++|+.-
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~~~~~pvi~l 80 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 80 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 56799999998875443 457877652112335677777667899888876653 4667888899999999997665
Q ss_pred e--cChhhHHHHHHCCCCeEEcCc
Q 003861 639 A--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
. ++.+......+.||+..+.-.
T Consensus 81 s~~~~~~~~~~a~~~Ga~~yl~KP 104 (118)
T d1u0sy_ 81 SAMGQQAMVIEAIKAGAKDFIVKP 104 (118)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESS
T ss_pred EccCCHHHHHHHHHcCCCEEEECC
Confidence 4 355666677899999876644
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.54 E-value=0.026 Score=53.06 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=63.2
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCC-----EEEccCCCH---HHHH----
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-----ILYGDASRP---AVLL---- 599 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~-----~v~GD~t~~---~~L~---- 599 (791)
+++.|+|.|.+|+.+|..+. ..|++|+++|.|++..+++.+.-.. +-.+..++. +.+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a----------~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 74 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSA----------SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP 74 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHH----------HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec
Confidence 47999999999999999887 7899999999999986655321000 000111100 1111
Q ss_pred ---hcCCCCCcEEEEEeCCHHHHH-HHHHHHHHhCCCCcEEEEecChhhHHHH
Q 003861 600 ---SAGITSPKAVMIMYTDKKRTI-EAVQRLRLAFPAIPIYARAQDMMHLLDL 648 (791)
Q Consensus 600 ---~agi~~a~~viv~~~~d~~n~-~~~~~ar~l~p~~~iiara~~~~~~~~L 648 (791)
...+.++|.|+=+..+|-+-- .+-..+-+.-|.-.|++...+.-....+
T Consensus 75 ~~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~l 127 (186)
T d1wdka3 75 TLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLL 127 (186)
T ss_dssp ESSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHH
T ss_pred ccccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHH
Confidence 134678898888887753222 2222333333333467666555554444
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.52 E-value=0.023 Score=53.13 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=57.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--ChhhHHHHHhcCCCEEEccCC------CHHHHHhcCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDAS------RPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~~v~~~~~~~~~~v~GD~t------~~~~L~~agi~ 604 (791)
++.|+|.|.+|..+|..|. +.|++|.+... |++.++...+...+-.++... -.+-++++ ++
T Consensus 2 kI~ViGaG~~GtalA~~la----------~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 70 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLV----------DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC-LE 70 (180)
T ss_dssp EEEEESCCHHHHHHHHHHH----------HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH-HT
T ss_pred EEEEECCCHHHHHHHHHHH----------HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHH-Hh
Confidence 4789999999999999998 88999999965 666777775433221111111 11223332 56
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 605 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 605 ~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
++|.++++++.... ..++..++...++..++.
T Consensus 71 ~ad~Ii~avps~~~-~~~~~~l~~~l~~~~ii~ 102 (180)
T d1txga2 71 NAEVVLLGVSTDGV-LPVMSRILPYLKDQYIVL 102 (180)
T ss_dssp TCSEEEECSCGGGH-HHHHHHHTTTCCSCEEEE
T ss_pred ccchhhcccchhhh-HHHHHhhccccccceecc
Confidence 89999999987532 223334444433333443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.45 E-value=0.054 Score=53.20 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc------CCCC
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GITS 605 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi~~ 605 (791)
.++|-| -+.+|+.+++.|. ++|++|++.|.|++..+..++.+..++..|.+|++-.+++ ...+
T Consensus 7 ~alITGas~GIG~aia~~la----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 7 GVLVTGGARGIGRAIAQAFA----------REGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 355555 5789999999998 8999999999999987777777888999999998765543 2246
Q ss_pred CcEEEEE
Q 003861 606 PKAVMIM 612 (791)
Q Consensus 606 a~~viv~ 612 (791)
-|.+|-.
T Consensus 77 iDiLVnn 83 (248)
T d2d1ya1 77 VDVLVNN 83 (248)
T ss_dssp CCEEEEC
T ss_pred CCeEEEe
Confidence 7777644
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.43 E-value=0.085 Score=47.92 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=64.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCC--HHHHHhcCCCCCc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR--PAVLLSAGITSPK 607 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~--~~~L~~agi~~a~ 607 (791)
..+.++|.|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+.....+ .+.+++.. +..+
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~----------~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~-~~~~ 95 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAK----------AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-GGVH 95 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-SSEE
T ss_pred CCCEEEEeecccchhhhhHHHh----------cCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc-CCCc
Confidence 3557999999999999999888 889999999999999999999998877654332 22333332 3455
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 637 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iia 637 (791)
.+|..+... .++. ...+.+.|+-+++.
T Consensus 96 ~~v~~~~~~-~~~~--~a~~~l~~~G~i~~ 122 (168)
T d1rjwa2 96 AAVVTAVSK-PAFQ--SAYNSIRRGGACVL 122 (168)
T ss_dssp EEEESSCCH-HHHH--HHHHHEEEEEEEEE
T ss_pred eEEeecCCH-HHHH--HHHHHhccCCceEe
Confidence 566666653 3333 33333444434433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.41 E-value=0.14 Score=46.43 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHH----Hh----cCCC-EEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKES----RK----LGFP-ILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~----~~----~~~~-~v~GD~t~~~~L~ 599 (791)
.+.++.|+|.|.+|+.++..|. ..+ .+++++|.|+++.+-. ++ .+.. .+.++...++.+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~----------~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~- 74 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCA----------LRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL- 74 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHH----------HHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH-
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh-
Confidence 4668999999999999998776 333 3799999998764332 21 2222 334433334444
Q ss_pred hcCCCCCcEEEEEeCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChh
Q 003861 600 SAGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMM 643 (791)
Q Consensus 600 ~agi~~a~~viv~~~~--------------d--~~n~~----~~~~ar~l~p~~~iiara~~~~ 643 (791)
++||.++++.+. | ..|.. ++..+++.+|+. ++.-+.|+-
T Consensus 75 ----~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~a-iviivsNPv 133 (154)
T d1pzga1 75 ----TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKT-FIIVVTNPL 133 (154)
T ss_dssp ----TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTC-EEEECCSSH
T ss_pred ----cCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCc-EEEEeCCcH
Confidence 588988887631 1 23443 345566668874 444456554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.27 E-value=0.11 Score=46.79 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=62.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~ 599 (791)
.+.++.|+|.|.+|..++..|. ..+ .+++++|.++++.+- +.+ ...++.... .|.+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~----------~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~-~d~~--- 70 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALM----------NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-GDYD--- 70 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CCGG---
T ss_pred CCCeEEEECcCHHHHHHHHHHH----------hcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE-CCHH---
Confidence 3457999999999999999886 333 479999999987322 221 123333332 2333
Q ss_pred hcCCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 600 SAGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 600 ~agi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
..++||.+|++.+. | ..|.. ++..+++.+|+. ++.-+.||-+
T Consensus 71 --~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a-~~ivvtNPvd 127 (148)
T d1ldna1 71 --DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQG-LFLVATNPVD 127 (148)
T ss_dssp --GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCS-EEEECSSSHH
T ss_pred --HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCc-eEEEecCccH
Confidence 35689999887653 2 34544 355667778885 4444566554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.15 E-value=0.16 Score=46.93 Aligned_cols=76 Identities=13% Similarity=0.260 Sum_probs=55.9
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCC-----
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT----- 604 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~----- 604 (791)
-++.|-||||+|+.+.+.+. +..+.+++.| |.+|+ ....+.+.++....++........+.++.
T Consensus 3 irIaINGfGRIGR~v~Ral~---------~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVT---------KQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTL 73 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHH---------TCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBH
T ss_pred EEEEEECCCHHHHHHHHHHH---------hCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchh
Confidence 46899999999999999997 2456777766 55544 34556778889988888877777777754
Q ss_pred -----CCcEEEEEeCCH
Q 003861 605 -----SPKAVMIMYTDK 616 (791)
Q Consensus 605 -----~a~~viv~~~~d 616 (791)
++|.|+=+|+--
T Consensus 74 ~~~~~~vDvViEcTG~f 90 (172)
T d2czca2 74 NDLLEKVDIIVDATPGG 90 (172)
T ss_dssp HHHHTTCSEEEECCSTT
T ss_pred hhhhccCCEEEECCCCC
Confidence 566666666653
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=93.05 E-value=0.02 Score=52.53 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
..+++|+|.|.+|+.+++.|. +.|. ++.+...+.++.+.+.+ .+..+. +-+-+.+ .+.++|.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~----------~~g~~~i~v~nRt~~ka~~l~~~~~~~~~-----~~~~~~~-~l~~~Di 87 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLV----------DRGVRAVLVANRTYERAVELARDLGGEAV-----RFDELVD-HLARSDV 87 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHH----------HHCCSEEEEECSSHHHHHHHHHHHTCEEC-----CGGGHHH-HHHTCSE
T ss_pred cCeEEEECCCHHHHHHHHHHH----------hcCCcEEEEEcCcHHHHHHHHHhhhcccc-----cchhHHH-HhccCCE
Confidence 457999999999999999998 7787 69999999988876654 454433 2233333 3578999
Q ss_pred EEEEeCCH
Q 003861 609 VMIMYTDK 616 (791)
Q Consensus 609 viv~~~~d 616 (791)
+|.+|+.+
T Consensus 88 vi~atss~ 95 (159)
T d1gpja2 88 VVSATAAP 95 (159)
T ss_dssp EEECCSSS
T ss_pred EEEecCCC
Confidence 99999864
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.03 E-value=0.041 Score=50.61 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=34.8
Q ss_pred EEEe-CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh
Q 003861 534 VVIV-GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 582 (791)
Q Consensus 534 viI~-G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~ 582 (791)
+.|+ |.|.+|+.+|+.|. +.|++|++.+.|+++++.+.+
T Consensus 3 i~vigGaG~iG~alA~~la----------~~G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLA----------TLGHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp EEEETTTSHHHHHHHHHHH----------TTTCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHH
Confidence 6777 78999999999998 899999999999998777653
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.93 E-value=0.027 Score=48.84 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCCEEEeCCCh-----------hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH
Q 003861 531 SEPVVIVGFGQ-----------MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~viI~G~G~-----------~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~ 599 (791)
++.++|+|.|+ .+.+.++.|+ +.|+++++|+.||+.+..-.+....+++--.|-+.+++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk----------~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~ 73 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALR----------EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLE 73 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHH----------HTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHH----------hcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHH
Confidence 56799999874 4668889998 89999999999999987544444455555555556666
Q ss_pred hcCCCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 003861 600 SAGITSPKAVMIMYTDKKRTIEAVQRLRLA 629 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~~n~~~~~~ar~l 629 (791)
-...++.|++++..+.-. .+.+++.+.+.
T Consensus 74 Ii~~E~p~~ii~~~GGQt-alnla~~L~~~ 102 (121)
T d1a9xa4 74 IVRIEKPKGVIVQYGGQT-PLKLARALEAA 102 (121)
T ss_dssp HHHHHCCSEEECSSSTHH-HHTTHHHHHHT
T ss_pred HHHHhCCCEEEeehhhhh-HHHHHHHHHHc
Confidence 688999999999988743 33344544444
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.93 E-value=0.088 Score=47.09 Aligned_cols=99 Identities=10% Similarity=0.079 Sum_probs=55.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH----HHHHhc---CCCEEEccCCCHHHHHhcCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV----KESRKL---GFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v----~~~~~~---~~~~v~GD~t~~~~L~~agi 603 (791)
++++.|+|.|.+|..++-.|.. .....+++++|.++++. .++++. .-+...-+ .+. ...
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~--------~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~-----~~~ 66 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMAL--------RQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-GDY-----SDV 66 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--------TTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CG-----GGG
T ss_pred CCeEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee-CcH-----HHh
Confidence 4579999999999999988861 12234799999999863 222221 01111111 122 236
Q ss_pred CCCcEEEEEeCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 604 TSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 604 ~~a~~viv~~~~d-----------~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
+++|.++++.+.. ..|.. ++..+++..|+. ++..+.||-+
T Consensus 67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvd 121 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVSNPVD 121 (142)
T ss_dssp TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECSSSHH
T ss_pred CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEecChHH
Confidence 7899888875431 22333 345566667774 5555666654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.90 E-value=0.23 Score=44.44 Aligned_cols=96 Identities=19% Similarity=0.127 Sum_probs=60.1
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHHhc
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~~a 601 (791)
+++.|+|.|.+|..++-.|. ..| .+++++|.|+++.+- +.+ .+.+..... .|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~----------~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~-~d~~~---- 66 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLI----------AQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI-NDWAA---- 66 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------HHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE-SCGGG----
T ss_pred CeEEEECcCHHHHHHHHHHH----------hcCCCceEEEEecccchhhhHHHhhhccccccCCccceec-cCHHH----
Confidence 46889999999999999886 333 489999999997432 221 233322221 23333
Q ss_pred CCCCCcEEEEEeCCH---------------HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 602 GITSPKAVMIMYTDK---------------KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 602 gi~~a~~viv~~~~d---------------~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
+++||.+|++.+.. +.|..+ +..+++.+|+ .++..+.||-+
T Consensus 67 -l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~-aivivvtNPvD 126 (146)
T d1hyha1 67 -LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH-GVLVVISNPVD 126 (146)
T ss_dssp -GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHH
T ss_pred -hccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCC-eEEEEecCcHH
Confidence 47899998876521 235443 4445666777 44555666554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.90 E-value=0.13 Score=47.20 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=61.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEc--cCCC--HHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYG--DASR--PAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~G--D~t~--~~~L~~agi~~ 605 (791)
.+.|+|.|.|..|...+..++ ..| ..|+++|.++++.+.+++.|.....- |..+ .+..++..-..
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~----------~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCK----------AAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCcHHHHHHHHH----------HcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence 457999999999999999998 565 68999999999999999988775543 3222 35566666678
Q ss_pred CcEEEEEeCCHHH
Q 003861 606 PKAVMIMYTDKKR 618 (791)
Q Consensus 606 a~~viv~~~~d~~ 618 (791)
+|.++-+++....
T Consensus 99 ~D~vid~~G~~~~ 111 (176)
T d2jhfa2 99 VDFSFEVIGRLDT 111 (176)
T ss_dssp BSEEEECSCCHHH
T ss_pred CCEEEecCCchhH
Confidence 9999888887543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.89 E-value=0.2 Score=44.28 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=67.0
Q ss_pred CEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|+| .||+|+.+++.+.+ +.+.+++ .+|.... .+.+. -.++|++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~---------~~~~~l~~~~d~~~~-------------------~~~~~---~~~~Dvv- 48 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAA---------ADDLTLSAELDAGDP-------------------LSLLT---DGNTEVV- 48 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTSEEEEEECTTCC-------------------THHHH---TTTCSEE-
T ss_pred CEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCc-------------------hhhhc---cccCCEE-
Confidence 378999 59999999998863 5666654 3443211 11121 1457854
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHC-----CCCeEEcCcHHHHHHHHHHHHh
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKA-----GATDAILENAETSLQLGSKLLK 673 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iiara~--~~~~~~~L~~~-----Gad~Vi~p~~~~~~~la~~~l~ 673 (791)
+-.+..+.....+..+.+.+ ++++.-.. ++++.+.+++. ++--++.|+.-.|..+..++++
T Consensus 49 IDFS~p~~~~~~~~~~~~~~--~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~ 116 (135)
T d1yl7a1 49 IDFTHPDVVMGNLEFLIDNG--IHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVR 116 (135)
T ss_dssp EECCCTTTHHHHHHHHHHTT--CEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHH
T ss_pred EEcccHHHHHHHHHHHHhcC--CCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHH
Confidence 55556666666666677765 45554332 46667777652 4556889998888777766655
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.074 Score=52.24 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc--CCCEEEccCCCHHHHHhc------CC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA------GI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~--~~~~v~GD~t~~~~L~~a------gi 603 (791)
.++|-|. +-+|+.+++.|. ++|.+|++.|.|++..+++.++ +...+.+|.+|++..+++ ..
T Consensus 8 ~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 8 VVVVTGGGRGIGAGIVRAFV----------NSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 4566665 689999999998 8999999999999998888764 456778999998877653 22
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
.+-|.+|-..
T Consensus 78 g~iDilVnnA 87 (250)
T d1ydea1 78 GRLDCVVNNA 87 (250)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEecc
Confidence 3567666544
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.82 E-value=0.12 Score=47.99 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=50.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHH-HHhcCCCEEEccCCCHHHHHhcCCC------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKE-SRKLGFPILYGDASRPAVLLSAGIT------ 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~-~~~~~~~~v~GD~t~~~~L~~agi~------ 604 (791)
+|.|.||||+|+.++|.+. +..+.+++.| |.+|+.... +... ....++...+....++-++.
T Consensus 3 KVaINGfGRIGR~v~Ral~---------~~~dievVaInd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~g~~~ 72 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAII---------KQPDMKLVGVAKTSPNYEAFIAHRR-GIRIYVPQQSIKKFEESGIPVAGTVE 72 (178)
T ss_dssp EEEEECCSHHHHHHHHHHH---------TCTTEEEEEEECSSCSHHHHHHHHT-TCCEECCGGGHHHHHTTTCCCCCCHH
T ss_pred EEEEECCCHHHHHHHHHHH---------hCCCCEEEEEECCCCcHHHHHhccc-CcceeccCccceeccccceecCCchh
Confidence 4789999999999999998 3567888887 555544333 3333 33455655555666655543
Q ss_pred ----CCcEEEEEeCCH
Q 003861 605 ----SPKAVMIMYTDK 616 (791)
Q Consensus 605 ----~a~~viv~~~~d 616 (791)
++|.|+=+|+..
T Consensus 73 ~~~~~vDiViecTG~f 88 (178)
T d1b7go1 73 DLIKTSDIVVDTTPNG 88 (178)
T ss_dssp HHHHHCSEEEECCSTT
T ss_pred hhhhcCCEEEECCCCc
Confidence 688888888874
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.073 Score=52.04 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCCE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc---
Q 003861 530 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 530 ~~~~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a--- 601 (791)
.++++ +|-|. +.+|+.+++.|. ++|++|++.|.+++..+++.+ .....+.+|.+|++..+++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~----------~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLA----------ARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhh
Confidence 34454 55565 569999999998 899999999999998877654 2356788999998776543
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+-|.+|-..
T Consensus 72 ~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred hhcccCCcceehhhh
Confidence 234677776554
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=92.72 E-value=0.19 Score=46.34 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=53.0
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChh-hHHHHHhcCCCEEEccCCCHHHHHhcCCC------
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPS-VVKESRKLGFPILYGDASRPAVLLSAGIT------ 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~-~v~~~~~~~~~~v~GD~t~~~~L~~agi~------ 604 (791)
.|.|-||||+|+.+.|.+. ++.+.+++.| |.+++ ....+...++....++..+....++.++.
T Consensus 3 ~VgINGfGRIGR~v~R~l~---------~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~ 73 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIA---------QQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVD 73 (171)
T ss_dssp EEEEECCSHHHHHHHHHHH---------TSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHH
T ss_pred EEEEEcCcHHHHHHHHHHH---------hCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChh
Confidence 5789999999999999987 2556777766 44443 34555667788877777666666766654
Q ss_pred ----CCcEEEEEeCCH
Q 003861 605 ----SPKAVMIMYTDK 616 (791)
Q Consensus 605 ----~a~~viv~~~~d 616 (791)
++|.|+=+|+..
T Consensus 74 ~~~~~vDvViEcTG~f 89 (171)
T d1cf2o1 74 DMLDEADIVIDCTPEG 89 (171)
T ss_dssp HHHHTCSEEEECCSTT
T ss_pred HhhcCCCEEEEccCCC
Confidence 566666666653
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.24 Score=44.86 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=67.6
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
++.|+|+|.+|+. ....+. ...+.+++ +.|.|+++.+.+. +.+.+. .++.+.|. ++.|+|
T Consensus 3 ri~iIG~G~~g~~~~~~~l~---------~~~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~----~~~D~V 65 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLA---------AASDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLA----ASCDAV 65 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHH---------SCSSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHH----TTCSEE
T ss_pred EEEEEcCCHHHHHHHHHHHH---------hCCCcEEEEEEechhHhhhhhhhcccccc----cccchhhh----hhcccc
Confidence 5789999999986 566775 14466655 6689999887765 455553 23444443 578999
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEE
Q 003861 610 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAI 657 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi 657 (791)
+++++++. -...+..+-+.+ .+|++. +.+.++.+.+ ++.|.-..+
T Consensus 66 ~I~tp~~~-h~~~~~~al~~g--k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v 117 (164)
T d1tlta1 66 FVHSSTAS-HFDVVSTLLNAG--VHVCVDKPLAENLRDAERLVELAARKKLTLMV 117 (164)
T ss_dssp EECSCTTH-HHHHHHHHHHTT--CEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cccccchh-cccccccccccc--ceeeccccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 99998754 344455555554 478773 4566666555 455654444
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.63 E-value=0.079 Score=51.85 Aligned_cols=74 Identities=15% Similarity=0.024 Sum_probs=54.0
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc---
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a--- 601 (791)
.+++ ++|-|. +-+|+.+++.|. ++|++|++.|.++++.+++.+ .....+.+|.+|++..+++
T Consensus 4 L~gK~alITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMV----------AEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHH
Confidence 3444 555576 569999999998 899999999999999877654 2356778999998776542
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
.....|.+|-..
T Consensus 74 ~~~~~g~idilinnA 88 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNA 88 (244)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCCeEEEECC
Confidence 223567666544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.62 E-value=0.066 Score=52.67 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=52.5
Q ss_pred EEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc-----
Q 003861 534 VVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 534 viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a----- 601 (791)
++|-|.+ .+|+.+|+.|. ++|.+|++.|.|++..++.. +.+ ...+.+|.+|++..+++
T Consensus 4 alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLV----------KDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQAR 73 (255)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 4666775 59999999998 89999999999998866543 344 44578999999877753
Q ss_pred -CCCCCcEEEEE
Q 003861 602 -GITSPKAVMIM 612 (791)
Q Consensus 602 -gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 74 ~~~g~iDilVnn 85 (255)
T d1gega_ 74 KTLGGFDVIVNN 85 (255)
T ss_dssp HHTTCCCEEEEC
T ss_pred HHhCCccEEEec
Confidence 34578877644
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.11 Score=51.16 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=53.4
Q ss_pred cCCCCEEE-eCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHh
Q 003861 529 EGSEPVVI-VGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~~viI-~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ 600 (791)
+.++++++ -|. +.+|+.+|+.|. ++|.+|++.|.|++..+++. +.+ ...+.+|.+|++..++
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~ 77 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------TTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHH
Confidence 35655444 454 679999999998 89999999999998866543 333 4567899999876654
Q ss_pred c------CCCCCcEEEEEe
Q 003861 601 A------GITSPKAVMIMY 613 (791)
Q Consensus 601 a------gi~~a~~viv~~ 613 (791)
+ ...+-|.+|-..
T Consensus 78 ~~~~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 78 LADFAISKLGKVDILVNNA 96 (255)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHHcCCCCEeeeCC
Confidence 2 223667666543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.53 E-value=0.1 Score=51.22 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=54.6
Q ss_pred cCCCCEEE-eCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHh
Q 003861 529 EGSEPVVI-VGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~~viI-~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ 600 (791)
..+|++++ .|. +.+|+.+++.|. ++|.+|++.|.|++..+++. +.+ ...+.+|.+|++..++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la----------~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~ 76 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLA----------KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISE 76 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHT----------TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 34565554 466 579999999998 89999999999998866543 333 4567899999987764
Q ss_pred c------CCCCCcEEEEEe
Q 003861 601 A------GITSPKAVMIMY 613 (791)
Q Consensus 601 a------gi~~a~~viv~~ 613 (791)
+ ...+-|.+|-..
T Consensus 77 ~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 77 VINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHhcCCceeeeecc
Confidence 2 335677766544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.49 E-value=0.076 Score=52.40 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=53.6
Q ss_pred CCCC-EEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc
Q 003861 530 GSEP-VVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~~-viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a 601 (791)
.+++ ++|-|.+ .+|+.+++.|. ++|++|++.|.|++..++.. +.+ ...+.+|.+|++..+++
T Consensus 6 L~GK~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~ 75 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELA----------SLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQEL 75 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHH
Confidence 4554 5666775 59999999998 89999999999999876654 333 45678999998866542
Q ss_pred ------CCC-CCcEEEEEe
Q 003861 602 ------GIT-SPKAVMIMY 613 (791)
Q Consensus 602 ------gi~-~a~~viv~~ 613 (791)
... .-|.+|-..
T Consensus 76 ~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 76 MNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp HHHHHHHTTTCCCEEEECC
T ss_pred HHHHHHHhCCCceEEEECC
Confidence 123 567776544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=92.47 E-value=0.084 Score=52.57 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=54.6
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c--CCCEEEccCCCHHHHHhc---
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L--GFPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~--~~~~v~GD~t~~~~L~~a--- 601 (791)
.+++ ++|-|. +.+|+.+++.|. ++|.+|++.|.|+++.+++.+ . ....+.+|.++++..+++
T Consensus 3 L~gK~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFV----------AEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASR 72 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHH
Confidence 3444 555565 689999999998 899999999999998877653 2 356778999999877654
Q ss_pred ---CCCCCcEEEEE
Q 003861 602 ---GITSPKAVMIM 612 (791)
Q Consensus 602 ---gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 73 ~~~~~g~idilvnn 86 (276)
T d1bdba_ 73 CVARFGKIDTLIPN 86 (276)
T ss_dssp HHHHHSCCCEEECC
T ss_pred HHHHhCCccccccc
Confidence 23456766543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.46 E-value=0.11 Score=47.71 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=57.1
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHH---hcCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLL---SAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~---~agi~~ 605 (791)
..++++|+|.|.+|...++.++ ..|.. +++.|.++++.+.+++.|...+. |.++++..+ +.-=..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak----------~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i-~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAK----------VCGASIIIAVDIVESRLELAKQLGATHVI-NSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHH----------HHTCSEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSC
T ss_pred CCCEEEEeCCCHHHhhhhhccc----------ccccceeeeeccHHHHHHHHHHcCCeEEE-eCCCcCHHHHHHHHcCCC
Confidence 3567999999999999999887 66775 55679999999999998865443 455544443 332236
Q ss_pred CcEEEEEeCCHH
Q 003861 606 PKAVMIMYTDKK 617 (791)
Q Consensus 606 a~~viv~~~~d~ 617 (791)
+|.++-+++..+
T Consensus 97 ~D~vid~~G~~~ 108 (174)
T d1f8fa2 97 VNFALESTGSPE 108 (174)
T ss_dssp EEEEEECSCCHH
T ss_pred CcEEEEcCCcHH
Confidence 899988888754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.38 E-value=0.28 Score=44.55 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=61.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHH----HHHh----cCCCEEEccCCCHHHHHh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVK----ESRK----LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~----~~~~----~~~~~v~GD~t~~~~L~~ 600 (791)
+..+.|+|.|.+|..+|..|. ..+. +++++|.|++..+ ++.+ .+.+.+... .|.+
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~----------~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~-~d~~---- 83 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISIL----------LKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG-KDYN---- 83 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------TTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEE-SSGG----
T ss_pred CCeEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEec-cchh----
Confidence 446999999999999999987 4443 7999999998743 3332 233443332 2333
Q ss_pred cCCCCCcEEEEEeCC---------H--HHHHHHHH----HHHHhCCCCcEEEEecChhh
Q 003861 601 AGITSPKAVMIMYTD---------K--KRTIEAVQ----RLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 601 agi~~a~~viv~~~~---------d--~~n~~~~~----~ar~l~p~~~iiara~~~~~ 644 (791)
...++|.+|++.+. | +.|..+.. .+++.+|+ -++.-+.||-+
T Consensus 84 -~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~-~ivivvtNPvD 140 (159)
T d2ldxa1 84 -VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPD-CKIIVVTNPVD 140 (159)
T ss_dssp -GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTT-CEEEECSSSHH
T ss_pred -hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCC-eEEEEeCCcHH
Confidence 34788888887753 1 45665543 35566776 34555555544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.35 E-value=0.093 Score=51.74 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a 601 (791)
.+++ ++|-|. +-+|+.+++.|. ++|.+|++.|.|++..+++. +.+ ...+.+|.+|++..+++
T Consensus 3 L~gK~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~ 72 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLA----------EEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGT 72 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 3444 555566 559999999998 89999999999998876554 333 45678999998765532
Q ss_pred ------CCCCCcEEEEE
Q 003861 602 ------GITSPKAVMIM 612 (791)
Q Consensus 602 ------gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 73 ~~~~~~~~g~iDilVnn 89 (260)
T d1zema1 73 VDSVVRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHhCCCCeehhh
Confidence 22467766644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.35 E-value=0.096 Score=51.41 Aligned_cols=74 Identities=18% Similarity=0.095 Sum_probs=53.1
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----hcCC--CEEEccCCCHHHHHh
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLGF--PILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----~~~~--~~v~GD~t~~~~L~~ 600 (791)
.+++ ++|.|. +.+|+.+|+.|. ++|.+|++.|.|++..++.. +.+. ..+.+|.+|++..++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~ 72 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLA----------EAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKK 72 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHH
Confidence 3444 566666 459999999998 89999999999998765432 2343 457899999887665
Q ss_pred c------CCCCCcEEEEEe
Q 003861 601 A------GITSPKAVMIMY 613 (791)
Q Consensus 601 a------gi~~a~~viv~~ 613 (791)
+ ...+.|.+|-..
T Consensus 73 ~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 3 223678776554
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.34 E-value=0.076 Score=52.28 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=55.0
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-c--CCCEEEccCCCHHHHHhc------C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L--GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~--~~~~v~GD~t~~~~L~~a------g 602 (791)
.++|.|. +.+|+.+++.|. ++|.+|++.|.|++..+++.+ . ....+.+|.+|++..+++ .
T Consensus 7 ~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYV----------REGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4566666 679999999998 899999999999998877654 2 345678999999987753 2
Q ss_pred CCCCcEEEEEeC
Q 003861 603 ITSPKAVMIMYT 614 (791)
Q Consensus 603 i~~a~~viv~~~ 614 (791)
..+.|.+|-..+
T Consensus 77 ~g~iDilVnnAg 88 (256)
T d1k2wa_ 77 WGSIDILVNNAA 88 (256)
T ss_dssp HSCCCEEEECCC
T ss_pred hCCccEEEeecc
Confidence 246777765543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.16 E-value=0.035 Score=48.68 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCEEEeCCCh-----------hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHH
Q 003861 530 GSEPVVIVGFGQ-----------MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~-----------~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L 598 (791)
..++++|+|.|+ .+.+.++.|+ +.|+++++|+.||+.+..-.+...++++--.|-+.+.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alk----------e~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~ 75 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALR----------EEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVR 75 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHH----------HHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHH----------HcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHH
Confidence 457899999875 4677889998 8999999999999998655555555666555666676
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHHHHHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIEAVQRL 626 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~~~~~a 626 (791)
+-...++.|+++...+.- ..+.++..+
T Consensus 76 ~Ii~~E~pd~il~~~GGQ-talnla~~L 102 (127)
T d1a9xa3 76 KIIEKERPDAVLPTMGGQ-TALNCALEL 102 (127)
T ss_dssp HHHHHHCCSEEECSSSHH-HHHHHHHHH
T ss_pred HHHHHhCcCCeEEEeeee-hHhHHHHHH
Confidence 667889999998888874 333334443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.13 E-value=0.1 Score=51.54 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----CCCEEEccCCCHHHHHhc-
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~~~~v~GD~t~~~~L~~a- 601 (791)
.+++ ++|-|. +-+|+.+|+.|. ++|.+|++.|.|++..+++.++ ....+.+|.+|++-.+++
T Consensus 4 L~gKvalITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~ 73 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFV----------RYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLV 73 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHH
Confidence 4555 445455 569999999998 8999999999999987776531 244678899998766653
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 74 ~~~~~~~g~iD~lVnnA 90 (268)
T d2bgka1 74 DTTIAKHGKLDIMFGNV 90 (268)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCcceecccc
Confidence 223667766443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.09 E-value=0.11 Score=50.94 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=53.9
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc-
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a- 601 (791)
.+++ ++|.|. +-+|+.+++.|. ++|.+|++.|.+++..+++.+ .....+.+|.+|++..+++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFV----------EEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLF 73 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHH
Confidence 4444 555565 569999999998 899999999999998776653 2356778999999866542
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 74 ~~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 74 DATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHHSSCCEEEECC
T ss_pred HHHHHHhCCceEEEecc
Confidence 224677666544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.22 Score=45.58 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=58.1
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHH----HHhcCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV----LLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~----L~~agi~~ 605 (791)
.+.|+|.|. |.+|...++..+ ..|.+|++++.++++.+.+++.|...+. |.++++. .+..+-+.
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~----------~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIAR----------AYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHHHCTTC
T ss_pred CCEEEEEecccccccccccccc----------ccCcccccccccccccccccccCccccc-ccccccHHHHhhhhhccCC
Confidence 457999995 999999999887 8899999999999999999998887654 6666443 33446677
Q ss_pred CcEEEEEeCC
Q 003861 606 PKAVMIMYTD 615 (791)
Q Consensus 606 a~~viv~~~~ 615 (791)
+|.++-+.++
T Consensus 98 ~d~v~d~~g~ 107 (174)
T d1yb5a2 98 IDIIIEMLAN 107 (174)
T ss_dssp EEEEEESCHH
T ss_pred ceEEeecccH
Confidence 8987766664
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=91.89 E-value=0.13 Score=51.48 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred cCCCCEEEe--CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----hc--CCCEEEccCCCHHHHH
Q 003861 529 EGSEPVVIV--GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KL--GFPILYGDASRPAVLL 599 (791)
Q Consensus 529 ~~~~~viI~--G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----~~--~~~~v~GD~t~~~~L~ 599 (791)
..+++++|+ |-+.+|+.+|+.|. ++|.+|++.|.|+++.++.. +. ....+..|.+|++..+
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la----------~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~ 91 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLS----------SLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQ 91 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHH
Confidence 466665555 56899999999998 89999999999998754432 22 3457789999999876
Q ss_pred hc------CCCCCcEEEEEeC
Q 003861 600 SA------GITSPKAVMIMYT 614 (791)
Q Consensus 600 ~a------gi~~a~~viv~~~ 614 (791)
++ ...+.|.+|-..+
T Consensus 92 ~~~~~~~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 92 NTVSELIKVAGHPNIVINNAA 112 (294)
T ss_dssp HHHHHHHHHTCSCSEEEECCC
T ss_pred HHhhhhhhhccccchhhhhhh
Confidence 42 3456777766543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=91.83 E-value=0.096 Score=51.02 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred CEEEeCCCh-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cC--CCEEEccCCCHHHHHhc--C----
Q 003861 533 PVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSA--G---- 602 (791)
Q Consensus 533 ~viI~G~G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~--~~~v~GD~t~~~~L~~a--g---- 602 (791)
.++|.|.++ +|+.+|+.|. ++|++|++.+.|++..++..+ .+ ...+++|.++++-.+++ .
T Consensus 7 ~alItGas~GIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFA----------REGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 566667765 9999999998 899999999999998776654 33 34567899888877542 1
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+-|.+|-..
T Consensus 77 ~g~iDiLinnA 87 (241)
T d2a4ka1 77 FGRLHGVAHFA 87 (241)
T ss_dssp HSCCCEEEEGG
T ss_pred hCCccEecccc
Confidence 13566665543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.80 E-value=0.42 Score=42.44 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=59.0
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHH----HHh----cCCCEEEccCCCHHHHHhcCC
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~----~~~----~~~~~v~GD~t~~~~L~~agi 603 (791)
+++.|+|.|.+|..++..|.. .....+++++|.++++.+- +++ .+...+.. .++.+. .
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~--------~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~-~~~~~~-----~ 67 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ--------RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDDPEI-----C 67 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------TTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESCGGG-----G
T ss_pred CEEEEECCCHHHHHHHHHHHh--------cCCCcEEEEEEeccccchhHHHHHHhccccCCCceeec-CCCHHH-----h
Confidence 468999999999999988761 1223479999999987532 222 12333332 123332 4
Q ss_pred CCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 604 TSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 604 ~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
+++|.+|++.+. | ..|..+ +..+++.+|+. ++.-+.||-+
T Consensus 68 ~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvD 122 (143)
T d1llda1 68 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNA-IYMLITNPVD 122 (143)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTS-EEEECCSSHH
T ss_pred hCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCe-EEEEeCCchH
Confidence 678988888754 1 234443 45556667764 4444555543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.092 Score=53.46 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=52.2
Q ss_pred EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC----Chhh---HHHHHhcCCCEEEccCCCHHHHHhc-CCC
Q 003861 534 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL----NPSV---VKESRKLGFPILYGDASRPAVLLSA-GIT 604 (791)
Q Consensus 534 viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~----d~~~---v~~~~~~~~~~v~GD~t~~~~L~~a-gi~ 604 (791)
++|.|. |-+|+.+++.|. +.|++|+++|. ..+. .+.....++.+++||.+|.+.|+++ .-.
T Consensus 3 iLItG~tGfIG~~l~~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 72 (338)
T d1udca_ 3 VLVTGGSGYIGSHTCVQLL----------QNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhcc
Confidence 677766 899999999998 88999999985 2222 3344556799999999999999775 334
Q ss_pred CCcEEEE
Q 003861 605 SPKAVMI 611 (791)
Q Consensus 605 ~a~~viv 611 (791)
++|+|+=
T Consensus 73 ~~d~ViH 79 (338)
T d1udca_ 73 AIDTVIH 79 (338)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 6787763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.094 Score=51.63 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC----CCEEEccCCCHHHHH
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG----FPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~----~~~v~GD~t~~~~L~ 599 (791)
.+++ ++|.|. +.+|+.+|+.|. ++|.+|++.|.|+++.+++. +.+ ...+.+|.+|++-.+
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~ 77 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALV----------QQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDIL 77 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHH
Confidence 4555 455555 689999999998 89999999999999876653 333 346789999998655
Q ss_pred hc------CCCCCcEEEEEe
Q 003861 600 SA------GITSPKAVMIMY 613 (791)
Q Consensus 600 ~a------gi~~a~~viv~~ 613 (791)
++ ...+-|.+|-..
T Consensus 78 ~~v~~~~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 78 SMFSAIRSQHSGVDICINNA 97 (257)
T ss_dssp HHHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHHhcCCCCEEEecc
Confidence 42 234567776554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.4 Score=43.82 Aligned_cols=133 Identities=16% Similarity=-0.027 Sum_probs=75.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|+|.|-.+++++..|. +.+.+++++..++++.+.+.+. ...+..-+ ..+....++|
T Consensus 18 ~k~vlIlGaGGaarai~~aL~----------~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~------~~~~~~~~~d 81 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLL----------QAQQNIVLANRTFSKTKELAERFQPYGNIQAVS------MDSIPLQTYD 81 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHH----------HTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEE------GGGCCCSCCS
T ss_pred CCEEEEECCcHHHHHHHHHHc----------ccCceeeeccchHHHHHHHHHHHhhccccchhh------hccccccccc
Confidence 458999999999999999998 6778999999999998877542 11211111 1123467899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEec-Chhh---HHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCCh
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DMMH---LLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~-~~~~---~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~ 679 (791)
.+|-+|+-...+-..-.......++..++--+. ++.. .+..++.|+..|+.-....-.+-+....-..|..|
T Consensus 82 iiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~f~iwtg~~~ 157 (171)
T d1p77a1 82 LVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMP 157 (171)
T ss_dssp EEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSHHHHHHHHHHHHHHHHSCCC
T ss_pred eeeecccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcccCcHHHHHHHHHHHHHHHHCCCC
Confidence 888887753221111011111222333443333 3333 56678889988876554333333333333334443
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.59 E-value=0.096 Score=44.84 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=40.8
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh------------HHHHHhcCCCEEEc
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV------------VKESRKLGFPILYG 590 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~------------v~~~~~~~~~~v~G 590 (791)
+.+++++|+|.|..|-++|..|. +.|.+|++++..+.. .+.+++.|.++..+
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~----------~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~ 83 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYA----------NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN 83 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred hcCCeEEEECCCccceeeeeeec----------ccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcC
Confidence 35679999999999999999998 899999999977653 22334556666655
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.11 Score=53.01 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=49.5
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC-------------ChhhHHHHHhcCCCEEEccCCCHH
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-------------NPSVVKESRKLGFPILYGDASRPA 596 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~-------------d~~~v~~~~~~~~~~v~GD~t~~~ 596 (791)
.+.|+|.|. |-+|+.+++.|. +.|++|+++|. +.++++........++.+|.+|.+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll----------~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 71 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELL----------EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQG 71 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHH----------HTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred CCeEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccc
Confidence 457888765 999999999998 88999999984 112234444567899999999999
Q ss_pred HHHhcCCC
Q 003861 597 VLLSAGIT 604 (791)
Q Consensus 597 ~L~~agi~ 604 (791)
.++++-.+
T Consensus 72 ~l~~~~~~ 79 (346)
T d1ek6a_ 72 ALQRLFKK 79 (346)
T ss_dssp HHHHHHHH
T ss_pred cccccccc
Confidence 99886433
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.48 E-value=0.12 Score=51.28 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC-----CCEEEccCCCHHHHH
Q 003861 531 SEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG-----FPILYGDASRPAVLL 599 (791)
Q Consensus 531 ~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~-----~~~v~GD~t~~~~L~ 599 (791)
+++ ++|.|. +-+|+.+|+.|. ++|.+|++.|.|++..+++.+ .+ ...+.+|.+|++..+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la----------~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~ 73 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFA----------QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQD 73 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHH
Confidence 444 555565 569999999998 899999999999988766542 22 457889999988765
Q ss_pred hc------CCCCCcEEEEE
Q 003861 600 SA------GITSPKAVMIM 612 (791)
Q Consensus 600 ~a------gi~~a~~viv~ 612 (791)
++ ...+.|.+|-.
T Consensus 74 ~~~~~~~~~~g~iDilvnn 92 (272)
T d1xkqa_ 74 QIINSTLKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHhCCceEEEeC
Confidence 42 22367777654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.36 E-value=0.29 Score=44.55 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCE-EEccCCC-HHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPI-LYGDASR-PAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~-v~GD~t~-~~~L~~agi~~a~ 607 (791)
.+.++|.|.|.+|...++.++ ..| ..++++|.++++.+.+++.|... +..+..+ ++.++..+-+.+|
T Consensus 33 g~~vli~GaG~vG~~~~~~a~----------~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLK----------VMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEE
T ss_pred CCEEEEeCCChHHHHHHHHHH----------hhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCce
Confidence 457999999999999999887 555 57888999999999999887654 3333222 3345555667799
Q ss_pred EEEEEeCCHH
Q 003861 608 AVMIMYTDKK 617 (791)
Q Consensus 608 ~viv~~~~d~ 617 (791)
.++-++++..
T Consensus 103 ~vid~~g~~~ 112 (172)
T d1h2ba2 103 VAMDFVGSQA 112 (172)
T ss_dssp EEEESSCCHH
T ss_pred EEEEecCcch
Confidence 8988888754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.35 E-value=0.15 Score=50.08 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCC-CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----HhcCC--CEEEccCCCHHHHHh
Q 003861 530 GSE-PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKLGF--PILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~-~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~~~~--~~v~GD~t~~~~L~~ 600 (791)
.++ .++|.|. +.+|+++++.|. ++|++|++.|.|++..+++ ++.+. +.+.+|.++++-+++
T Consensus 4 L~gK~alITGas~GIG~aia~~la----------~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELA----------GLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDK 72 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHH
Confidence 444 5777786 569999999998 8999999999999775554 34443 457799999986654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.34 E-value=0.14 Score=50.29 Aligned_cols=71 Identities=14% Similarity=0.006 Sum_probs=53.8
Q ss_pred CEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc---CCCEEEccCCCHHHHHhc------C
Q 003861 533 PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------G 602 (791)
Q Consensus 533 ~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~---~~~~v~GD~t~~~~L~~a------g 602 (791)
.++|-|.+ .+|+.+++.|. ++|.+|++.|.+++..++..++ ....+.+|.+|++..+++ .
T Consensus 7 ~alVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAV----------AAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 45666664 69999999998 8999999999999988776542 356788999999877653 2
Q ss_pred CCCCcEEEEEe
Q 003861 603 ITSPKAVMIMY 613 (791)
Q Consensus 603 i~~a~~viv~~ 613 (791)
..+.|.+|-..
T Consensus 77 ~g~iDilVnnA 87 (254)
T d1hdca_ 77 FGSVDGLVNNA 87 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCccEEEecC
Confidence 24677666544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.32 E-value=0.12 Score=50.87 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCCCEE-EeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----cC-----CCEEEccCCCHHHH
Q 003861 530 GSEPVV-IVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG-----FPILYGDASRPAVL 598 (791)
Q Consensus 530 ~~~~vi-I~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~~-----~~~v~GD~t~~~~L 598 (791)
.+++++ |.|. +.+|+.+++.|. ++|.+|++.|.|++..+++.+ .+ ...+.+|.+|++-.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v 72 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFA----------REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQ 72 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHH
Confidence 355554 4454 789999999998 899999999999988766542 22 55778999998876
Q ss_pred Hhc------CCCCCcEEEEE
Q 003861 599 LSA------GITSPKAVMIM 612 (791)
Q Consensus 599 ~~a------gi~~a~~viv~ 612 (791)
+++ ...+.|.+|-.
T Consensus 73 ~~~~~~~~~~~g~iDilvnn 92 (264)
T d1spxa_ 73 DEILSTTLGKFGKLDILVNN 92 (264)
T ss_dssp HHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHHHhCCCCEeecc
Confidence 652 12356666543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.30 E-value=0.14 Score=50.33 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=53.8
Q ss_pred cCCC-CEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHh
Q 003861 529 EGSE-PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 529 ~~~~-~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~ 600 (791)
++++ .++|.|.+ .+|+.+|+.|. ++|.+|++.|.|++..++.. +.+ ...+.+|.+|++..++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la----------~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 74 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFA----------GFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREK 74 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHH
Confidence 3454 46666664 59999999998 89999999999998876654 233 4567789999876554
Q ss_pred c------CC-CCCcEEEEEeC
Q 003861 601 A------GI-TSPKAVMIMYT 614 (791)
Q Consensus 601 a------gi-~~a~~viv~~~ 614 (791)
+ .. .+-|.+|-..+
T Consensus 75 ~~~~~~~~~~g~idilvnnAG 95 (259)
T d1xq1a_ 75 LMQTVSSMFGGKLDILINNLG 95 (259)
T ss_dssp HHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHhCCCccccccccc
Confidence 2 11 35677766554
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.27 E-value=0.13 Score=50.56 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=52.4
Q ss_pred CE-EEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC--CCEEEccCCCHHHHHhc---
Q 003861 533 PV-VIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 533 ~v-iI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~~L~~a--- 601 (791)
+| +|-|.+ -+|+.+|+.|. ++|++|++.|.|++..++.. +.+ ...+.+|.+|++..+++
T Consensus 3 KValITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~ 72 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLG----------KEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAA 72 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 44 566664 59999999998 89999999999998866543 334 45678999999877643
Q ss_pred ---CCCCCcEEEEEe
Q 003861 602 ---GITSPKAVMIMY 613 (791)
Q Consensus 602 ---gi~~a~~viv~~ 613 (791)
...+-|.+|-..
T Consensus 73 ~~~~~g~iDilVnnA 87 (257)
T d2rhca1 73 VVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred HHHHhCCCCEEEecc
Confidence 234677776543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.24 E-value=0.36 Score=42.88 Aligned_cols=95 Identities=11% Similarity=0.126 Sum_probs=59.5
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHH----HHh----cC-CCEEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE----SRK----LG-FPILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~----~~~----~~-~~~v~GD~t~~~~L~~a 601 (791)
++.|+|.|++|..++..|. .++ .+++++|.|+++.+- +++ .+ ..-+.+ .+|.+
T Consensus 2 KI~IIGaG~VG~~~a~~l~----------~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~-~~d~~----- 65 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCL----------LNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GADYS----- 65 (142)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESCGG-----
T ss_pred EEEEECcCHHHHHHHHHHH----------hcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc-CCCHH-----
Confidence 4789999999999999886 233 369999999988432 221 12 223333 22333
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
..+++|.++++.+. | ..|.. ++..+++.+|+ -++..+.||-+
T Consensus 66 ~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~-aivivvtNPvD 122 (142)
T d1ojua1 66 LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKILVVTNPMD 122 (142)
T ss_dssp GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEEECSSSHH
T ss_pred HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCC-cEEEEecCChH
Confidence 35788988887762 2 35555 34445556776 36666666654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.21 E-value=0.3 Score=44.29 Aligned_cols=77 Identities=13% Similarity=0.268 Sum_probs=57.1
Q ss_pred CCCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEE-EccCCC--HHHHHhcCCC
Q 003861 530 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPIL-YGDASR--PAVLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v-~GD~t~--~~~L~~agi~ 604 (791)
..++++|.|. |.+|...++.++ ..| .+|+++|.++++.+.+++.|...+ ..+..| ++..+..+=+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~----------~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAK----------AVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHH----------HHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEEeccccceeeeeeccc----------ccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcc
Confidence 3457999995 999999999887 667 589999999999999999887543 333222 2344444556
Q ss_pred CCcEEEEEeCCH
Q 003861 605 SPKAVMIMYTDK 616 (791)
Q Consensus 605 ~a~~viv~~~~d 616 (791)
.+|.++-++++.
T Consensus 97 ~~d~vid~~g~~ 108 (170)
T d1jvba2 97 GVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEEESCCCH
T ss_pred cchhhhcccccc
Confidence 789888887764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.19 E-value=0.091 Score=45.54 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=33.3
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
+.+++++|+|.|..|-++|..|. +.|.+|++++.++.
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~----------~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYS----------RLGSKVTVVEFQPQ 57 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSS
T ss_pred cCCCeEEEECCCchHHHHHHHHH----------hhCcceeEEEeccc
Confidence 35679999999999999999998 89999999998764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.16 E-value=0.13 Score=51.00 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=51.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----hcC-----CCEEEccCCCHHHHHhc-
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG-----FPILYGDASRPAVLLSA- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~~~-----~~~v~GD~t~~~~L~~a- 601 (791)
.++|-|. +-+|+.+|+.|. ++|.+|++.|.|++..+++. +.+ ...+.+|.+|++..+++
T Consensus 6 ~alITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (274)
T d1xhla_ 6 SVIITGSSNGIGRSAAVIFA----------KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDII 75 (274)
T ss_dssp EEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHH
Confidence 4566666 569999999998 89999999999998866543 332 45788999999866543
Q ss_pred -----CCCCCcEEEEE
Q 003861 602 -----GITSPKAVMIM 612 (791)
Q Consensus 602 -----gi~~a~~viv~ 612 (791)
...+.|.+|..
T Consensus 76 ~~~~~~~G~iDilVnn 91 (274)
T d1xhla_ 76 NTTLAKFGKIDILVNN 91 (274)
T ss_dssp HHHHHHHSCCCEEEEC
T ss_pred HHHHHHcCCceEEEee
Confidence 22366777654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.05 E-value=0.29 Score=43.34 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=58.2
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhhHHHHH----h----cCCC-EEEccCCCHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESR----K----LGFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~v~~~~----~----~~~~-~v~GD~t~~~~L~~a 601 (791)
++.|+|.|.+|+.++..|. ..+ .+++++|.|+++.+... + .... .+..+ +|.+.
T Consensus 2 KI~IIGaG~VG~~la~~l~----------~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~-~~~~~---- 66 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLA----------EKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-NDYAD---- 66 (142)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SCGGG----
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec-CCHHH----
Confidence 4789999999999999887 333 58999999998743221 1 1112 22222 33433
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
.+++|.++++.+. | ..|.. ++..+++.+|+. ++.-+.||-+
T Consensus 67 -~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~a-ivivvtNPvd 122 (142)
T d1guza1 67 -TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP-IIIVVSNPLD 122 (142)
T ss_dssp -GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSC-EEEECCSSHH
T ss_pred -hcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCe-EEEEecCChH
Confidence 4788988888652 1 23433 345666667774 4444555544
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.02 E-value=0.11 Score=50.04 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=34.0
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+..++++|+|.|.-|-..|..|. +.|++|+++|.+++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~----------~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLM----------ESGYTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSST
T ss_pred cCCceEEEEcccHHHHHHHHHHH----------HhccceeeEeecccc
Confidence 35678999999999999999998 899999999987754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.93 E-value=0.056 Score=53.59 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=43.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
+.+|+|+|.|..|..+|..|. +.|++|+++|.+++.-. ... .....-++...++|+++|+.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~----------~~G~~v~vlE~~~~~~~--~~~-~~~~~l~~~~~~~l~~lg~~ 62 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLH----------KAGIDNVILERQTPDYV--LGR-IRAGVLEQGMVDLLREAGVD 62 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHH----------HHTCCEEEECSSCHHHH--HTC-CCCCEECHHHHHHHHHTTCC
T ss_pred CCCEEEECcCHHHHHHHHHHH----------HCCCCEEEEeCCCCCCC--CCC-ceEEEECHHHHHHHHHcCch
Confidence 458999999999999999998 89999999999886422 111 11122233445677777775
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=90.85 E-value=0.66 Score=42.47 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred CEEEeCCChhHHH-HHHHhhhhccCCCCCCCC-C-CcEE-EEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 533 PVVIVGFGQMGQV-LANLLSAPLASGSDGNTV-G-WPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 533 ~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~-g-~~vv-vID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|+|.+|+. ..+.+. +. + .+++ +.|.|+++.+.+.+ .+...++.|. ++.+++ ++.|
T Consensus 5 rigiIG~G~~g~~~h~~~l~----------~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~--~ell~~---~~id 69 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALK----------NLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSY--EELLES---GLVD 69 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHH----------TTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCH--HHHHHS---SCCS
T ss_pred EEEEEcCCHHHHHHHHHHHH----------hCCCCeEEEEEEeccHhhhhhhhccccccceeeee--eccccc---cccc
Confidence 5899999999987 467776 32 2 3555 66999999887654 5666666542 344443 5689
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
+|+++++++ .....+..+-+.+ .+|++. +.+.++.+.+ ++.|....+.
T Consensus 70 ~v~I~tp~~-~h~~~~~~al~~g--k~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~ 124 (181)
T d1zh8a1 70 AVDLTLPVE-LNLPFIEKALRKG--VHVICEKPISTDVETGKKVVELSEKSEKTVYIA 124 (181)
T ss_dssp EEEECCCGG-GHHHHHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEE
T ss_pred eeecccccc-ccccccccccccc--hhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 999998864 4566666666664 577773 3455555544 4557665444
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.18 Score=49.15 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCCEEEe--CCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhc--CCC
Q 003861 530 GSEPVVIV--GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GIT 604 (791)
Q Consensus 530 ~~~~viI~--G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~a--gi~ 604 (791)
.+++++++ |-+.+|+.+++.|. ++|++|+++|.|+++.++..+ .+......|.++++..++. .+.
T Consensus 4 l~gK~alITGas~GIG~aia~~la----------~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 73 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFA----------REGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVE 73 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccc
Confidence 45565555 56889999999998 899999999999999887765 5677778888888776653 445
Q ss_pred CCcEEEEE
Q 003861 605 SPKAVMIM 612 (791)
Q Consensus 605 ~a~~viv~ 612 (791)
+-|.+|-.
T Consensus 74 ~id~lVn~ 81 (245)
T d2ag5a1 74 RLDVLFNV 81 (245)
T ss_dssp CCSEEEEC
T ss_pred cceeEEec
Confidence 67776655
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.77 E-value=0.22 Score=45.37 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=59.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHHhcCCCEEEccCC----CHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDAS----RPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~~~~~~~v~GD~t----~~~~L~~agi~~ 605 (791)
.+.|+|.|.|..|...++.++ ..| ..|+++|.++++.+.+++.|...+.-... -.+.+++.+=..
T Consensus 29 G~tVlI~GaGGvG~~aiq~ak----------~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 29 GSVCAVFGLGGVGLAVIMGCK----------VAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCEEEEecchhHHHHHHHHHH----------HHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCC
Confidence 457899999999999999988 677 46888899999999999998765542211 124555656668
Q ss_pred CcEEEEEeCCHH
Q 003861 606 PKAVMIMYTDKK 617 (791)
Q Consensus 606 a~~viv~~~~d~ 617 (791)
+|.++-+++++.
T Consensus 99 ~D~vid~~G~~~ 110 (176)
T d2fzwa2 99 VDYSFECIGNVK 110 (176)
T ss_dssp BSEEEECSCCHH
T ss_pred CcEeeecCCCHH
Confidence 999999888754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.76 E-value=0.15 Score=49.93 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-cC--CCEEEccCCCHHHHHhc---
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LG--FPILYGDASRPAVLLSA--- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-~~--~~~v~GD~t~~~~L~~a--- 601 (791)
.+++ ++|.|. +-+|+.+++.|. ++|.+|++.|.|++..+++.+ .+ ...+.+|.+|++..+++
T Consensus 4 L~gK~alITGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLL----------GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHH
Confidence 4444 555565 459999999998 899999999999998877654 23 44667899998876653
Q ss_pred ---CCCCCcEEEEEeC
Q 003861 602 ---GITSPKAVMIMYT 614 (791)
Q Consensus 602 ---gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 74 ~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHCSCCEEEECCC
T ss_pred HHHHhCCCCeEEeccc
Confidence 2245677666553
|
| >d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TrkA C-terminal domain-like superfamily: TrkA C-terminal domain-like family: TrkA C-terminal domain-like domain: Potassium channel-related protein MthK, C-terminal domain species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.70 E-value=0.048 Score=45.03 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=51.0
Q ss_pred HHHHHHHHhcccccceeeeecCCCc-hhhcccccCCcch------hhhhhccCCCCCCCCccccccCCCCCCCCCCCCce
Q 003861 682 VTFLRQLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRV------ADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGV 754 (791)
Q Consensus 682 ~~~l~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~i~~------~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~gd~~ 754 (791)
..++++.+..+.+..+.|+.++.+. ..+++++++++|. ..++| +++....|.++++++.||.+
T Consensus 5 ~~~v~d~l~~~~~~~i~Ei~V~~~S~lvGktl~el~l~~~~~~~ViaI~r----------~g~~i~~p~~~~~l~~gD~L 74 (92)
T d2fy8a2 5 AMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGR----------GDELIIDPPRDYSFRAGDII 74 (92)
T ss_dssp HHHHHHHHTSCSSCEEEEEECCSSSTTTTCBHHHHCHHHHHSCEEEEEEE----------TTEEEESCCTTCBCCTTCEE
T ss_pred hhhHHHHhhccCCCEEEEEEECCCCccCCCCHHHcCCchhcCeEEEEEEe----------CCceecCCCCccEeCCCCEE
Confidence 3455666777888999999887654 3666666555444 34444 34455669999999999999
Q ss_pred eeeeccCC
Q 003861 755 LYCELNGT 762 (791)
Q Consensus 755 l~~~~~~~ 762 (791)
+..|.+.+
T Consensus 75 ~v~G~~~~ 82 (92)
T d2fy8a2 75 LGIGKPEE 82 (92)
T ss_dssp EEEECHHH
T ss_pred EEEECHHH
Confidence 99998654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.70 E-value=0.088 Score=49.12 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=51.0
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.++ ..|.+|.+.|.++.. +..... + +-++. ++++|.++
T Consensus 42 gk~vgIiG~G~IG~~va~~l~----------~~g~~v~~~d~~~~~-------~~~~~~-~-~l~el-----l~~sDiv~ 97 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILA----------ALGAQVRGFSRTPKE-------GPWRFT-N-SLEEA-----LREARAAV 97 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHH----------HTTCEEEEECSSCCC-------SSSCCB-S-CSHHH-----HTTCSEEE
T ss_pred CceEEEeccccccccceeeee----------ccccccccccccccc-------cceeee-e-chhhh-----hhccchhh
Confidence 346999999999999999998 899999999987652 111111 1 11222 46888888
Q ss_pred EEeCCHHH--HHHHHHHHHHhCCC
Q 003861 611 IMYTDKKR--TIEAVQRLRLAFPA 632 (791)
Q Consensus 611 v~~~~d~~--n~~~~~~ar~l~p~ 632 (791)
+..+..++ ++.-....+.+.++
T Consensus 98 ~~~pl~~~t~~li~~~~l~~mk~~ 121 (181)
T d1qp8a1 98 CALPLNKHTRGLVKYQHLALMAED 121 (181)
T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred cccccccccccccccceeeecccc
Confidence 87765332 33334444555444
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=90.67 E-value=0.11 Score=47.72 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=55.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
++.|+|+|.+|+..++.+.+ ..+.+++ +.|.+++..+ ...+...+ +.+.+ .++.|++++
T Consensus 5 rvgiiG~G~ig~~~~~~l~~---------~~~~elvav~~~~~~~~~-----~~~~~~~~--~~~~~----~~~~D~Vvi 64 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAK---------QPDMDLVGIFSRRATLDT-----KTPVFDVA--DVDKH----ADDVDVLFL 64 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTT---------CSSEEEEEEEESSSCCSS-----SSCEEEGG--GGGGT----TTTCSEEEE
T ss_pred eEEEECChHHHHHHHHHHHh---------CCCcEEEEEEeccccccc-----ccccccch--hhhhh----ccccceEEE
Confidence 68999999999999999972 4567765 5566665422 23333322 22222 357899999
Q ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEE----ecChhhHHHHH
Q 003861 612 MYTDKKRTIEAVQRLRLAFPAIPIYAR----AQDMMHLLDLK 649 (791)
Q Consensus 612 ~~~~d~~n~~~~~~ar~l~p~~~iiar----a~~~~~~~~L~ 649 (791)
+++++.. ...+..+-+. +.+++.. ..+.++.+.+.
T Consensus 65 ~tp~~~h-~~~a~~aL~a--G~~vv~~~~~~~~~~~~~~~l~ 103 (170)
T d1f06a1 65 CMGSATD-IPEQAPKFAQ--FACTVDTYDNHRDIPRHRQVMN 103 (170)
T ss_dssp CSCTTTH-HHHHHHHHTT--TSEEECCCCCGGGHHHHHHHHH
T ss_pred eCCCccc-HHHHHHHHHC--CCcEEEecCccccCHHHHHHHH
Confidence 9988643 4444444444 3455532 33345455553
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.62 E-value=0.051 Score=51.56 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+++.|+|+|++|+.+++.|+ ..|.+|.+.|...+.... ..++.. + +-++.+ +++|.++
T Consensus 43 gk~vgIiG~G~IG~~va~~l~----------~fg~~V~~~d~~~~~~~~--~~~~~~---~-~l~~~l-----~~sDii~ 101 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIME----------GFGAKVITYDIFRNPELE--KKGYYV---D-SLDDLY-----KQADVIS 101 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCHHHH--HTTCBC---S-CHHHHH-----HHCSEEE
T ss_pred CCeEEEecccccchhHHHhHh----------hhcccccccCcccccccc--cceeee---c-cccccc-----ccccccc
Confidence 357999999999999999998 899999999977654332 223221 1 113333 4688888
Q ss_pred EEeCCHH--HHHHHHHHHHHhCCC
Q 003861 611 IMYTDKK--RTIEAVQRLRLAFPA 632 (791)
Q Consensus 611 v~~~~d~--~n~~~~~~ar~l~p~ 632 (791)
+..+-.+ .++.-....+.+.++
T Consensus 102 ~~~plt~~T~~li~~~~l~~mk~~ 125 (197)
T d1j4aa1 102 LHVPDVPANVHMINDESIAKMKQD 125 (197)
T ss_dssp ECSCCCGGGTTCBSHHHHHHSCTT
T ss_pred ccCCccccccccccHHHHhhhCCc
Confidence 7766432 333334445555544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.60 E-value=0.44 Score=42.37 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=59.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHH--hcC-C---CEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESR--KLG-F---PILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~--~~~-~---~~v~GD~t~~~~L~~agi 603 (791)
++.|+|. |++|+.++-.|. ..+. +++++|.++.+.+... +.. + ....+..++++.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~----------~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~----- 66 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLK----------NSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCL----- 66 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHH----------TCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHH-----
T ss_pred eEEEECCCChHHHHHHHHHH----------hCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHh-----
Confidence 5889995 999999999997 4443 6999999887643322 111 1 1222222223333
Q ss_pred CCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 604 TSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 604 ~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
++||.+|++.+. | ..|..+ +..+++.+|+ -++..+.||-+
T Consensus 67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~-~iiivvtNPvD 121 (144)
T d1mlda1 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPD-AMICIISNPVN 121 (144)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSCHH
T ss_pred CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCC-eEEEEecCchh
Confidence 788988887652 1 345544 4566777887 45555666655
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=90.55 E-value=0.28 Score=46.84 Aligned_cols=113 Identities=18% Similarity=0.064 Sum_probs=70.1
Q ss_pred CCCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEE-EEcCChhhHHHHHh-cCCCE--EEccCCCHHHHHhcCCCC
Q 003861 531 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPI--LYGDASRPAVLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vv-vID~d~~~v~~~~~-~~~~~--v~GD~t~~~~L~~agi~~ 605 (791)
+=++.|+|+|.+|+. ..+.+. ...+.+++ ++|.|+++.+...+ .+.+. ++ ..+|.+-|- .-.+
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~---------~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~-~~~d~~ell--~~~~ 100 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFA---------GCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY-DYSNFDKIA--KDPK 100 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTT---------TCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE-CSSSGGGGG--GCTT
T ss_pred CEEEEEEcCcHHHHHHHHHHHH---------hCCCceEEEEecCCHHHHHHHHHhhcccccccc-ccCchhhhc--cccc
Confidence 347999999999974 667776 14577777 77999999877654 44431 11 123333322 2367
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH----HHCCCCeEEc
Q 003861 606 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL----KKAGATDAIL 658 (791)
Q Consensus 606 a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar---a~~~~~~~~L----~~~Gad~Vi~ 658 (791)
.|+|+++++++.. ...+..+-+.+ .+|++. +.+.++.+.+ ++.|....+.
T Consensus 101 iD~V~I~tp~~~H-~~~~~~al~~g--k~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~ 157 (221)
T d1h6da1 101 IDAVYIILPNSLH-AEFAIRAFKAG--KHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 157 (221)
T ss_dssp CCEEEECSCGGGH-HHHHHHHHHTT--CEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred ceeeeeccchhhh-hhHHHHhhhcc--hhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEe
Confidence 8999999987644 44444455554 578875 4566666555 3345554433
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=90.52 E-value=0.065 Score=47.96 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=57.9
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-h-------cCCC-EEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-K-------LGFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-~-------~~~~-~v~GD~t~~~~L~~a 601 (791)
++.+.|+|.|++|..+|-.|.. +.-.+++.+|.++++.+-.. + .+.. -+.+ ..|.+
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~---------~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~-~~d~~----- 65 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAA---------KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-TNNYA----- 65 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESCGG-----
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEe-cCcHH-----
Confidence 3578999999999999988862 22237999999998743321 1 1111 1222 12222
Q ss_pred CCCCCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 602 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 602 gi~~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
..+++|.+|++.+. | ..|.. ++..+++.+|+. ++.-+.||-+
T Consensus 66 ~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~a-ivivvtNPvD 122 (142)
T d1uxja1 66 DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNA-VIIMVNNPLD 122 (142)
T ss_dssp GGTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTC-EEEECSSSHH
T ss_pred HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCc-eEEEeCCchH
Confidence 24788988888753 1 34443 344555567764 4444555543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.40 E-value=0.19 Score=49.34 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=50.6
Q ss_pred CEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--C--CCEEEccCCCHHHHHhc--
Q 003861 533 PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--G--FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 533 ~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~--~~~v~GD~t~~~~L~~a-- 601 (791)
.++|.|.+ -+|+.+++.|. ++|.+|++.|.|++..++..+ . + ...+.+|.+|++-.+++
T Consensus 6 ~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~ 75 (258)
T d1iy8a_ 6 VVLITGGGSGLGRATAVRLA----------AEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVT 75 (258)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHH
Confidence 45566765 59999999998 899999999999988665432 1 2 34678899998877643
Q ss_pred ----CCCCCcEEEEE
Q 003861 602 ----GITSPKAVMIM 612 (791)
Q Consensus 602 ----gi~~a~~viv~ 612 (791)
...+.|.+|-.
T Consensus 76 ~~~~~~G~iDiLVnn 90 (258)
T d1iy8a_ 76 ATTERFGRIDGFFNN 90 (258)
T ss_dssp HHHHHHSCCSEEEEC
T ss_pred HHHHHhCCCCEEEEC
Confidence 12356766643
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.24 E-value=0.14 Score=46.77 Aligned_cols=124 Identities=10% Similarity=0.027 Sum_probs=76.6
Q ss_pred cCCCCEEEeCCChhHHHHHHH-hhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEcc-CCCHHHHHhcCCCCC
Q 003861 529 EGSEPVVIVGFGQMGQVLANL-LSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD-ASRPAVLLSAGITSP 606 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~-L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD-~t~~~~L~~agi~~a 606 (791)
..+.++.+.=+|..++.-++. .. .+-++..|+.++.++ .+.++.-+.+.-+++
T Consensus 33 g~rP~v~la~lG~~a~h~ara~f~-------------------------~n~f~~gGfev~~~~~~~~~e~v~aa~~~~a 87 (163)
T d7reqb2 33 SERPKVFLACLGTRRDFGGREGFS-------------------------SPVWHIAGIDTPQVEGGTTAEIVEAFKKSGA 87 (163)
T ss_dssp SSCCBCEEEECSCHHHHHHHHHHH-------------------------HHHHHHTTCBCCEEESCCHHHHHHHHHHHTC
T ss_pred CCCCeEEEEcCCChhhhhhHHHHH-------------------------HHHHHccCeeeccCCCCCcHHHHHHHHhCCC
Confidence 345678888888888443321 10 011223345444443 233444455566788
Q ss_pred cEEEEEeCCHHHHH---HHHHHHHHhCCCCcEEEEe-cChhhHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCC
Q 003861 607 KAVMIMYTDKKRTI---EAVQRLRLAFPAIPIYARA-QDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVM 678 (791)
Q Consensus 607 ~~viv~~~~d~~n~---~~~~~ar~l~p~~~iiara-~~~~~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~ 678 (791)
|.++++..|+...- .++..+|+.+++..+++-. ...++.+.++++|+|..|.+.... ....+.+++.+|+.
T Consensus 88 ~vvvicssd~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d~-~~~l~~l~~~lGva 162 (163)
T d7reqb2 88 QVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDV-VDTLSSTLDILGVA 162 (163)
T ss_dssp SEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEECTTCCH-HHHHHHHHHHTTCC
T ss_pred CEEEEecCccchHHHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeEecCCCcH-HHHHHHHHHHhcCC
Confidence 98888877654332 4677778877765555533 456677889999999999988654 55566677666653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.12 Score=44.30 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
.+++++|+|.|..|-++|..|. +.|.+|+++|..+.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~----------~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVIN----------GLGAKTHLFEMFDA 55 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSS
T ss_pred CCCEEEEECCChhhHHHHHHhh----------ccccEEEEEeecch
Confidence 4578999999999999999998 89999999998653
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=90.23 E-value=0.89 Score=39.81 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=68.7
Q ss_pred cEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEec
Q 003861 566 PFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 566 ~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
.|.+||.|+...+.+ ++.|+.+... .+-.+.++.+.-...|.++.-..=+ .+=+.++..+|+.+|+++||.-..
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~~-~~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~~~~~pvI~lT~ 80 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAGFTVSSF-ASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 80 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEe-CChHHHHHHHhccCcchHHHhhccCCCCHHHHHHHHHHhCCCCcEEEEEC
Confidence 378999999875544 4578887765 3456788888888999877765433 445678889999999999776554
Q ss_pred --ChhhHHHHHHCCCCeEEcCc
Q 003861 641 --DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 641 --~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+......++||+..+.-.
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~KP 102 (140)
T d1qkka_ 81 HGDIPMAVQAIQDGAYDFIAKP 102 (140)
T ss_dssp GGGHHHHHHHHHTTCCEEEESS
T ss_pred CCCHHHHHHHHHcCCCEeecCC
Confidence 45666667889999877543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.2 Score=50.30 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=53.2
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---------c--CCCEEEccCCCHH
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------L--GFPILYGDASRPA 596 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---------~--~~~~v~GD~t~~~ 596 (791)
.+++ ++|.|. +.+|+.+|+.|. ++|.+|++.|.|+++.+...+ . ....+.+|.+|++
T Consensus 10 L~gKvalITGas~GIG~aia~~la----------~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~ 79 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELL----------ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 79 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHH
Confidence 4555 555566 569999999998 899999999999987655432 1 2446789999998
Q ss_pred HHHhc------CCCCCcEEEEEe
Q 003861 597 VLLSA------GITSPKAVMIMY 613 (791)
Q Consensus 597 ~L~~a------gi~~a~~viv~~ 613 (791)
..+++ ...+-|.+|-..
T Consensus 80 ~v~~~~~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 80 EVNNLVKSTLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHhCCeEEEEeec
Confidence 76653 224677776543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.20 E-value=0.23 Score=48.36 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred cCCCC-EEEeCCC---hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH---h--cCCCEEEccCCCHHHHH
Q 003861 529 EGSEP-VVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K--LGFPILYGDASRPAVLL 599 (791)
Q Consensus 529 ~~~~~-viI~G~G---~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~---~--~~~~~v~GD~t~~~~L~ 599 (791)
+.+++ ++|-|.+ .+|+.+++.|. ++|.+|++.|.+++..+.++ + .....+..|.+|++-.+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la----------~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 74 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLK----------EAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELD 74 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHH----------HTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHH----------HCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHH
Confidence 45555 6666753 49999999998 89999999999877644433 2 23567889999997766
Q ss_pred hc------CCCCCcEEEE
Q 003861 600 SA------GITSPKAVMI 611 (791)
Q Consensus 600 ~a------gi~~a~~viv 611 (791)
++ ...+-|.+|-
T Consensus 75 ~~~~~~~~~~g~iDilVn 92 (256)
T d1ulua_ 75 ALFAGVKEAFGGLDYLVH 92 (256)
T ss_dssp HHHHHHHHHHSSEEEEEE
T ss_pred HHHHHHHHhcCCceEEEe
Confidence 53 1235676653
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=90.19 E-value=0.56 Score=39.96 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=67.9
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.+|.+||.|+...+.+ ++.|+.+.... +-.+.++.+.-.+.|.+++-..= +.+-+.++..+|+..|+++|+.-.
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~-~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~pvi~lt 80 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAA-NGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 80 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEeC-CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 3689999999875443 45788877643 33456666665688988776543 244577888999999999977655
Q ss_pred --cChhhHHHHHHCCCCeEEcCc
Q 003861 640 --QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 --~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.+......++||+..+.-.
T Consensus 81 ~~~~~~~~~~a~~~Ga~~yl~KP 103 (119)
T d1peya_ 81 AYGELDMIQESKELGALTHFAKP 103 (119)
T ss_dssp SSCCHHHHHHHHHTTCCEEEESS
T ss_pred cCCCHHHHHHHHHCCCCEEEECC
Confidence 356777788999999977643
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.13 E-value=0.13 Score=50.47 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=53.5
Q ss_pred cCCCC-EEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH-----hcC--CCEEEccCCCHHHHH
Q 003861 529 EGSEP-VVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLG--FPILYGDASRPAVLL 599 (791)
Q Consensus 529 ~~~~~-viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~-----~~~--~~~v~GD~t~~~~L~ 599 (791)
+.+++ ++|-|.+ .+|+.+++.|. ++|.+|++.|.+++..++.. +.+ ...+.+|.+|++-.+
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~ 75 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVA----------AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVT 75 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHH----------HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHH
Confidence 34555 4555664 59999999998 89999999999988754432 223 456889999998765
Q ss_pred hc------CCCCCcEEEEEe
Q 003861 600 SA------GITSPKAVMIMY 613 (791)
Q Consensus 600 ~a------gi~~a~~viv~~ 613 (791)
++ ...+.|.+|-..
T Consensus 76 ~~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 76 KTIQQIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHHHHHSCSEEEEEECC
T ss_pred HHHHHHHHHhCCCcEecccc
Confidence 43 345778776544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.01 E-value=0.38 Score=43.75 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEE-c-cCCC--HHHHHhcCCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY-G-DASR--PAVLLSAGITS 605 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~-G-D~t~--~~~L~~agi~~ 605 (791)
..+.|+|.|.|..|...+..+.. ..+.+|+++|.++++.+.+++.|...+. - |..+ .+..+..+-..
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~---------~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHS---------AGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---------TTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEEecCCccchHHHHHHH---------HhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 34568899999999999998872 3455799999999999999999865544 1 2211 35555555568
Q ss_pred CcEEEEEeCCHHH
Q 003861 606 PKAVMIMYTDKKR 618 (791)
Q Consensus 606 a~~viv~~~~d~~ 618 (791)
+|.++-+++..+.
T Consensus 99 ~d~vid~~G~~~~ 111 (175)
T d1cdoa2 99 VDFSLECVGNVGV 111 (175)
T ss_dssp BSEEEECSCCHHH
T ss_pred cceeeeecCCHHH
Confidence 9999999887654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.94 E-value=0.17 Score=43.70 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
.++++|+|.|-.|-++|..|+ +.|.+|+++|..+..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~----------~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATAR----------TAGVHVSLVETQPRL 65 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSST
T ss_pred CCeEEEECcchhHHHHHHHhh----------cccceEEEEeecccc
Confidence 568999999999999999999 889999999987754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.93 E-value=0.18 Score=51.21 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=51.4
Q ss_pred EEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh----h---hHHHHHhcCCCEEEccCCCHHHHHhc-CCC
Q 003861 534 VVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP----S---VVKESRKLGFPILYGDASRPAVLLSA-GIT 604 (791)
Q Consensus 534 viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~----~---~v~~~~~~~~~~v~GD~t~~~~L~~a-gi~ 604 (791)
|+|.| .|-+|+.+++.|. +.|++|+++|.-. + ..+.....+++++++|.+|.+-++++ .-.
T Consensus 4 ILVTGatGfIG~~lv~~Ll----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 73 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELI----------ENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY 73 (347)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS
T ss_pred EEEeCCCcHHHHHHHHHHH----------HCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc
Confidence 55555 4899999999998 8899999998521 1 22334457899999999999999875 223
Q ss_pred CCcEEEEE
Q 003861 605 SPKAVMIM 612 (791)
Q Consensus 605 ~a~~viv~ 612 (791)
++|+|+=+
T Consensus 74 ~~d~Vihl 81 (347)
T d1z45a2 74 KIDSVIHF 81 (347)
T ss_dssp CCCEEEEC
T ss_pred CCCEEEEc
Confidence 68877744
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.87 E-value=0.75 Score=42.13 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=67.3
Q ss_pred CCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE
Q 003861 563 VGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 563 ~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiar 638 (791)
++.+|.|+|.|++..+.+ +..|+++....... +.|. ..+|.|+.-..-+..+.......++.+|+++||.-
T Consensus 10 ~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~-~al~----~~~Dlvl~D~~mp~~~~~~~~~~~~~~p~~pvI~l 84 (189)
T d1qo0d_ 10 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP-EAFD----VPVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVAL 84 (189)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC-SSCS----SCCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHH-Hhcc----CCCCEEEEcCCCCCcHHHHHHHHHHcCCCCCEEEE
Confidence 467999999999985544 46799888775443 3443 57999888776555667777778888899996665
Q ss_pred ec--ChhhHHHHHHCCCCeEEcC
Q 003861 639 AQ--DMMHLLDLKKAGATDAILE 659 (791)
Q Consensus 639 a~--~~~~~~~L~~~Gad~Vi~p 659 (791)
.. +.+......++||+..+.-
T Consensus 85 ta~~~~~~~~~al~~Ga~~yL~K 107 (189)
T d1qo0d_ 85 VEYESPAVLSQIIELECHGVITQ 107 (189)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEES
T ss_pred eccchHHHHHHHHHcCCcEEEEe
Confidence 44 5677788889999986653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=89.64 E-value=0.17 Score=50.64 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=50.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC--Chh---hHHHHH-hcCCCEEEccCCCHHHHHhcCC-C
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPS---VVKESR-KLGFPILYGDASRPAVLLSAGI-T 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~--d~~---~v~~~~-~~~~~~v~GD~t~~~~L~~agi-~ 604 (791)
+|+|.|. |-+|+.+++.|. ++|++|+++|. +.. +.+.+. ..++.++.||.+|.+.++++-- .
T Consensus 2 KILVTGatGfIGs~lv~~Ll----------~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~ 71 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFAL----------SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY 71 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc
Confidence 3566654 889999999998 78999999984 122 223333 3568899999999998877521 2
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
++|+|+=+.
T Consensus 72 ~~d~Vih~a 80 (338)
T d1orra_ 72 MPDSCFHLA 80 (338)
T ss_dssp CCSEEEECC
T ss_pred CCceEEeec
Confidence 467776543
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=89.61 E-value=1.1 Score=38.26 Aligned_cols=96 Identities=21% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCcEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.+.|.+||.|+...+. +++.|+.+... .+-++.++.+.-.+.|.+++-..= +.+=...+..+|+.+|+.+++.-
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~~~~~iI~l 81 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH-QSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE-SCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcCCCCeEEEE
Confidence 4689999999987544 34678877654 344677777777788988766542 34567788889999999997665
Q ss_pred e--cChhhHHHHHHCCCCeEEcCc
Q 003861 639 A--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
. .+.+......++||+..+.-.
T Consensus 82 t~~~~~~~~~~a~~~Ga~~yl~KP 105 (123)
T d1dbwa_ 82 TGHGDVPMAVEAMKAGAVDFIEKP 105 (123)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESS
T ss_pred EeeCCHHHHHHHHHCCCCEEEECC
Confidence 5 455666777899999876643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.58 E-value=0.44 Score=44.51 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHhcCCCEEEccCCCHH----HHHhcCCC
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPA----VLLSAGIT 604 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~----~L~~agi~ 604 (791)
..+.|+|.|.|..|...+...+ ..|. +|+++|.++++.+.+++.|...+. |..+++ +.+..+=.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak----------~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASAR----------LLGAAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSSS
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hhcccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHHHhCCC
Confidence 4558999999999998888876 4555 799999999999999999987765 444433 33333556
Q ss_pred CCcEEEEEeCC
Q 003861 605 SPKAVMIMYTD 615 (791)
Q Consensus 605 ~a~~viv~~~~ 615 (791)
.+|.++=+.+.
T Consensus 94 g~D~vid~vG~ 104 (195)
T d1kola2 94 EVDCAVDAVGF 104 (195)
T ss_dssp CEEEEEECCCT
T ss_pred CcEEEEECccc
Confidence 78888877663
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.53 E-value=0.19 Score=43.40 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=39.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-------h----HHHHHhcCCCEEEc
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-------V----VKESRKLGFPILYG 590 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-------~----v~~~~~~~~~~v~G 590 (791)
..++++|+|.|..|-++|..|+ +.|.+|++++.++- . .+.+++.|+++..+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~----------~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~ 80 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLA----------GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHH----------HTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred CCCeEEEECCCccHHHHHHHHh----------hcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence 5679999999999999999999 89999999987631 1 23345567666655
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.51 E-value=0.21 Score=48.87 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=46.8
Q ss_pred cCCCCEEEe-CCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh----c--C--CCEEEccCCCHHHH
Q 003861 529 EGSEPVVIV-GFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--G--FPILYGDASRPAVL 598 (791)
Q Consensus 529 ~~~~~viI~-G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~----~--~--~~~v~GD~t~~~~L 598 (791)
.++++++|+ |.+ .+|+.+|+.|.+.. ++|++|++++.+++..+++.+ . + ...+.+|.+|++-.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~-------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v 75 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLL-------SPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGV 75 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTB-------CTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcc-------cCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHH
Confidence 356666555 664 69999999996101 479999999999998776543 1 2 45678999998765
Q ss_pred Hh
Q 003861 599 LS 600 (791)
Q Consensus 599 ~~ 600 (791)
++
T Consensus 76 ~~ 77 (259)
T d1oaaa_ 76 QR 77 (259)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.50 E-value=0.18 Score=49.38 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=52.4
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc--
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a-- 601 (791)
.++|-|. +.+|+.+++.|. ++|.+|++.|.|++..++..+ .....+.+|.+|++..+++
T Consensus 5 valITGas~GIG~aia~~la----------~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALL----------LKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFR 74 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHH
Confidence 4556576 569999999998 899999999999988665432 1245678999999877653
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
...+.|.+|-..+
T Consensus 75 ~~~~~~G~iDilVnnAg 91 (254)
T d2gdza1 75 KVVDHFGRLDILVNNAG 91 (254)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCcCeeccccc
Confidence 2246777665543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.34 Score=44.24 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=55.7
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHh----cCCCC
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS----AGITS 605 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~----agi~~ 605 (791)
.++|+|.|. |.+|+.+++..+ ..|.+|+++|.++++.+.+++.|.+.+. |.++++..++ -+=..
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak----------~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAK----------ALGAKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCC
T ss_pred CCEEEEEccccccchHHHHHHH----------HhCCeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCCC
Confidence 457888855 559999988887 7899999999999999999999977654 6666544443 24466
Q ss_pred CcEEEEEeCC
Q 003861 606 PKAVMIMYTD 615 (791)
Q Consensus 606 a~~viv~~~~ 615 (791)
.|.++-+.+.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 7876666654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=2 Score=37.81 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=60.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH---HhcCCCE---EEccCCCHHHHHhcCCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES---RKLGFPI---LYGDASRPAVLLSAGITS 605 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~---~~~~~~~---v~GD~t~~~~L~~agi~~ 605 (791)
++.|+|. |++|+.++-.|..+. ....+++.+|.++.....+ .+..... ..-+.++.+. +++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~-------~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-----~~~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQL-------PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPA-----LEG 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHS-------CTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHH-----HTT
T ss_pred EEEEEcCCChHHHHHHHHHHhCC-------CCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccc-----cCC
Confidence 4789995 999999998774100 2457899999987543332 2221111 1122333443 358
Q ss_pred CcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhH
Q 003861 606 PKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHL 645 (791)
Q Consensus 606 a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~~ 645 (791)
+|.+|++.+. | ..|..+ +..+++..|+ .++.-+.||-+.
T Consensus 70 aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~-aivivvtNPvD~ 123 (145)
T d2cmda1 70 ADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGIITNPVNT 123 (145)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEECSSSHHH
T ss_pred CCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCC-cEEEEccCCchH
Confidence 8988888753 2 345543 5566777888 456667777664
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.24 E-value=0.2 Score=42.92 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 574 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~ 574 (791)
.++++|+|.|..|-++|..|. +.|.+|++++..+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~----------~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIK----------RLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHH----------TTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHH----------hccccceeeehhc
Confidence 568999999999999999998 8999999999743
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.11 E-value=0.2 Score=46.77 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=35.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL 583 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~ 583 (791)
++.|+|.|.+|..+|..+ +.|++|+.+|.|+++++.+.+.
T Consensus 2 kI~ViGlG~vGl~~a~~~-----------a~g~~V~g~Din~~~v~~l~~g 41 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-----------SLQNEVTIVDILPSKVDKINNG 41 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-----------TTTSEEEEECSCHHHHHHHHTT
T ss_pred EEEEECCChhHHHHHHHH-----------HCCCcEEEEECCHHHHHHHhhc
Confidence 478899999999999877 4699999999999999988754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.07 E-value=0.12 Score=44.13 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
..+++++|+|.|..|-++|..|+ +.|.+|+++|..+..
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~----------~~g~~Vtlve~~~~i 56 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYR----------KLGAQVSVVEARERI 56 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HHTCEEEEECSSSSS
T ss_pred cCCCeEEEECCCHHHHHHHHHHh----------hcccceEEEeeeccc
Confidence 34578999999999999999998 899999999987653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=88.96 E-value=0.16 Score=46.45 Aligned_cols=132 Identities=12% Similarity=-0.046 Sum_probs=74.8
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcC---CCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG---FPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~---~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
.++++|+|.|-.+++++-.|. +.|.++.++..++++.+.+.+.- ..+...+. .+....++|
T Consensus 18 ~k~vlIlGaGGaarai~~al~----------~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~------~~~~~~~~d 81 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLL----------SLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM------DELEGHEFD 81 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS------GGGTTCCCS
T ss_pred CCEEEEECCcHHHHHHHHHhc----------ccceEEEeccchHHHHHHHHHHHhhccccccccc------ccccccccc
Confidence 358999999999999999998 78889999999999988776421 12222222 122346789
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE-ecChh---hHHHHHHCCCCeEEcCcHHHHHHHHHHHHhhcCCCh
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQDMM---HLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 679 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiar-a~~~~---~~~~L~~~Gad~Vi~p~~~~~~~la~~~l~~l~~~~ 679 (791)
.+|-+|+-...+-.--.-.....++ .++.- +.++. ..+..++.|...++.-....-.|-+...--..|..|
T Consensus 82 liIN~Tp~G~~~~~~~~~~~~~~~~-~~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~Qa~~~f~lwtG~~~ 156 (170)
T d1nyta1 82 LIINATSSGISGDIPAIPSSLIHPG-IYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLP 156 (170)
T ss_dssp EEEECCSCGGGTCCCCCCGGGCCTT-CEEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSCC
T ss_pred eeecccccCcccCCCCCcHHHhccC-cEEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHhCCCC
Confidence 8887775321100000000112333 34443 33443 444456678887776654333333333322334433
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=88.94 E-value=0.11 Score=50.26 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
..++|+|+|.|.-|...|..|. +.|++|+++|.+++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~----------~~G~~v~v~Er~~~~ 39 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLR----------DAGVDVDVYERSPQP 39 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHH----------HCCCCEEEEeCCCCC
Confidence 4668999999999999999998 889999999987653
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.81 E-value=0.72 Score=40.07 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcE
Q 003861 561 NTVGWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPI 635 (791)
Q Consensus 561 ~~~g~~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~i 635 (791)
+..+..|.+||.|+...+. ++..|+.+...+ +-.+.++...-...|.+++-..=. .+-..++..+|+..++++|
T Consensus 5 ~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~g~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~pi 83 (133)
T d2ayxa1 5 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAN-DGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 83 (133)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEEC-CSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEEC-cHHHHHHHHhccCceEEEEeccCCCCCHHHHHHHHHHhCCCCCE
Confidence 4567889999999987544 346788876543 335566766677899888776432 3456788889998888886
Q ss_pred EEEec--ChhhHHHHHHCCCCeEEcCc
Q 003861 636 YARAQ--DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 636 iara~--~~~~~~~L~~~Gad~Vi~p~ 660 (791)
++-.. +.+......++||+..+.-.
T Consensus 84 i~lt~~~~~~~~~~~~~~G~~~~l~KP 110 (133)
T d2ayxa1 84 IGVTANALAEEKQRCLESGMDSCLSKP 110 (133)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESS
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEECC
Confidence 65444 46677778899999877654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.60 E-value=0.13 Score=49.29 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 574 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~ 574 (791)
.+++|+|||.|-.|-..|..|. ++|.+|+++|.++
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~----------~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILA----------RKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHH----------HCCCCEEEEeCCC
Confidence 4568999999999999999998 8999999999864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=88.56 E-value=0.43 Score=44.36 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|++|+.+++.|+ ..|.+|...|..+.......+.+... -.+-++. .+++|.++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~~~~~~~~~~~~---~~~l~~~-----l~~sD~v~ 105 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLA----------PFDVHLHYTDRHRLPESVEKELNLTW---HATREDM-----YPVCDVVT 105 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHG----------GGTCEEEEECSSCCCHHHHHHHTCEE---CSSHHHH-----GGGCSEEE
T ss_pred ccceeeccccccchhhhhhhh----------ccCceEEEEeeccccccccccccccc---cCCHHHH-----HHhccchh
Confidence 457999999999999999998 88999999998654433333333221 1122233 36788887
Q ss_pred EEeCCH
Q 003861 611 IMYTDK 616 (791)
Q Consensus 611 v~~~~d 616 (791)
+..+-.
T Consensus 106 ~~~plt 111 (188)
T d2naca1 106 LNCPLH 111 (188)
T ss_dssp ECSCCC
T ss_pred hccccc
Confidence 776653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.52 E-value=0.23 Score=51.28 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=50.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC--------------------hhhHHH---HHhcCCCEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN--------------------PSVVKE---SRKLGFPIL 588 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d--------------------~~~v~~---~~~~~~~~v 588 (791)
+|+|.|. |-+|+.+++.|. +.|++|+++|+- ++..++ ....+++++
T Consensus 3 kILVTGatGfiG~~lv~~Ll----------~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 72 (393)
T d1i24a_ 3 RVMVIGGDGYCGWATALHLS----------KKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY 72 (393)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEE
Confidence 4777776 889999999998 899999999842 112222 223578999
Q ss_pred EccCCCHHHHHhc--CCCCCcEEEE
Q 003861 589 YGDASRPAVLLSA--GITSPKAVMI 611 (791)
Q Consensus 589 ~GD~t~~~~L~~a--gi~~a~~viv 611 (791)
.||.+|.+.++++ +. +.|.|+=
T Consensus 73 ~~Dl~d~~~l~~~~~~~-~~d~ViH 96 (393)
T d1i24a_ 73 VGDICDFEFLAESFKSF-EPDSVVH 96 (393)
T ss_dssp ESCTTSHHHHHHHHHHH-CCSEEEE
T ss_pred EccCCCHHHHHHHHHhh-cchheec
Confidence 9999999999876 22 4676653
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.48 E-value=1.1 Score=39.92 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH----Hh----cCCC-EEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RK----LGFP-ILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~----~~----~~~~-~v~GD~t~~~~L~~a 601 (791)
+.++.|+|.|.+|..++..|.+ ..=.+++++|.++++.+-. .+ .+.+ .+.+. .+.+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~---------~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~-~~~~----- 67 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ---------KNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTYD----- 67 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH---------TTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCGG-----
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------CCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEec-cccc-----
Confidence 4579999999999999987762 1113699999999874322 11 2222 23322 2333
Q ss_pred CCCCCcEEEEEeCC--------------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 602 GITSPKAVMIMYTD--------------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 602 gi~~a~~viv~~~~--------------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
..+++|.++++.+. | ..|..+ +..+++.+|+. ++.-+.||-+
T Consensus 68 ~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~a-ivivvtNPvD 129 (150)
T d1t2da1 68 DLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA-FIIVVTNPVD 129 (150)
T ss_dssp GGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSSSHH
T ss_pred ccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCe-EEEEecCchH
Confidence 34789988888762 1 234443 45567778874 5555666644
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.46 E-value=0.17 Score=43.74 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=33.7
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+..++++|+|.|-.|-++|..+. +.|.+|++++.++..
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~----------~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWG----------RIGSEVTVVEFASEI 60 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHH----------HHTCEEEEECSSSSS
T ss_pred ccCCeEEEEccchHHHHHHHHHH----------hcCCeEEEEEEcccc
Confidence 35679999999999999999998 899999999886654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=88.45 E-value=0.072 Score=54.19 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=53.5
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC-CcEEEEcCChhhHHHHH-hcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g-~~vvvID~d~~~v~~~~-~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+|+|.|. |-+|+.+++.|. ++| ++|+++|...+...+.. ...+.++.||.++.+-+.+.-.+++|.|
T Consensus 2 KILITG~tGfiG~~l~~~Ll----------~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~V 71 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLL----------REDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVV 71 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHH----------HSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEE
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcc
Confidence 3677776 889999999997 566 68999998776655443 3568899999988755444335678988
Q ss_pred EEEeC
Q 003861 610 MIMYT 614 (791)
Q Consensus 610 iv~~~ 614 (791)
+-+..
T Consensus 72 ih~a~ 76 (342)
T d2blla1 72 LPLVA 76 (342)
T ss_dssp EECBC
T ss_pred ccccc
Confidence 77654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.42 E-value=0.12 Score=52.65 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHH----HHH-hcCCCEEEccCCCHHHHHhcCC-
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK----ESR-KLGFPILYGDASRPAVLLSAGI- 603 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~----~~~-~~~~~~v~GD~t~~~~L~~agi- 603 (791)
.++++|.| .|-+|+.+++.|. +.|++|.++|.++.... ..+ ..+++.+.||.+|++.+.++--
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~ 77 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQ----------TMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIRE 77 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhh
Confidence 35788888 4789999999998 89999999998765422 222 2479999999999998877532
Q ss_pred CCCcEEEEEe
Q 003861 604 TSPKAVMIMY 613 (791)
Q Consensus 604 ~~a~~viv~~ 613 (791)
...+.++-+.
T Consensus 78 ~~~~~v~~~a 87 (356)
T d1rkxa_ 78 FQPEIVFHMA 87 (356)
T ss_dssp HCCSEEEECC
T ss_pred chhhhhhhhh
Confidence 3456555544
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=88.31 E-value=0.62 Score=40.23 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHh--CCCCc
Q 003861 562 TVGWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLA--FPAIP 634 (791)
Q Consensus 562 ~~g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l--~p~~~ 634 (791)
.+..+|.+||.|+...+.+ ++.|+..+..-.+-++.++.+.-...|.+++-..= +.+-...+..+|+. .++++
T Consensus 4 ~~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~~~~~~p 83 (129)
T d1p6qa_ 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCcccCCCe
Confidence 4567899999999875443 45788655543333567777776788977665432 24567778888873 45677
Q ss_pred EEEEe--cChhhHHHHHHCCCCeEEcCc
Q 003861 635 IYARA--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 635 iiara--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
++.-. .+.+......++|+|..+.-.
T Consensus 84 ii~lt~~~~~~~~~~a~~~G~~~~l~KP 111 (129)
T d1p6qa_ 84 FIILTAQGDRALVQKAAALGANNVLAKP 111 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCC
T ss_pred EEEEEecCCHHHHHHHHHCCCCEEEECC
Confidence 66544 456667788999999877543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=87.95 E-value=0.59 Score=42.39 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh-cCCCEEEccCCCHHHHHhcCCCCCcE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 608 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~-~~~~~v~GD~t~~~~L~~agi~~a~~ 608 (791)
.++++|+|.|-.+++++..|. +.|. ++.++..++++.+.+.+ .+...+ + .....++|.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~----------~~g~~~I~I~nR~~~ka~~L~~~~~~~~~--~--------~~~~~~~Dl 76 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFK----------NSGFEKLKIYARNVKTGQYLAALYGYAYI--N--------SLENQQADI 76 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHH----------HTTCCCEEEECSCHHHHHHHHHHHTCEEE--S--------CCTTCCCSE
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEecccHHHHHHHHHhhhhhhh--h--------cccccchhh
Confidence 458999999999999999998 7785 79999999999888765 333222 2 122357898
Q ss_pred EEEEeC
Q 003861 609 VMIMYT 614 (791)
Q Consensus 609 viv~~~ 614 (791)
+|-+|+
T Consensus 77 iINaTp 82 (167)
T d1npya1 77 LVNVTS 82 (167)
T ss_dssp EEECSS
T ss_pred heeccc
Confidence 877765
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.54 E-value=0.3 Score=41.98 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=66.2
Q ss_pred cEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 566 PFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 566 ~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
.+.+||.|+...+. +++.|+.+.... +-.+.++.+.-.+.|.+++-..= +..-...+..+|+.+++++|+.-..
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~piI~lt~ 81 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGFEVATAV-DGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhcCCCCEEEEEEe
Confidence 47888988886443 445788876543 33566777777889988776542 3567888999999999999666443
Q ss_pred --ChhhHHHHHHCCCCeEEcCc
Q 003861 641 --DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 641 --~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+......++||+..+.-.
T Consensus 82 ~~~~~~~~~a~~~Ga~dyl~KP 103 (121)
T d1ys7a2 82 RSSVDDRVAGLEAGADDYLVKP 103 (121)
T ss_dssp CCTTTCCCTTTTTTCSEEEESS
T ss_pred eCCHHHHHHHHHCCCCEEEECC
Confidence 45555667889999876543
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.48 E-value=0.58 Score=39.96 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=67.3
Q ss_pred CCcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 003861 564 GWPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 564 g~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiar 638 (791)
+.+|.+||.|+...+.+ ++.|+.+...+ +-.+.++.+.-...|.++.-..= +..-...+..+|+..+..++++-
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~piI~l 79 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKKEMFTVDVCY-DGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML 79 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEc-chHHHHHHHHhhCccccccccccccchhHHHHHHHHhcCCCCcEEEE
Confidence 35789999999875444 45788877543 33456666666789988776543 35667788889998888887776
Q ss_pred ecC--hhhHHHHHHCCCCeEEcCcH
Q 003861 639 AQD--MMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 639 a~~--~~~~~~L~~~Gad~Vi~p~~ 661 (791)
... .+......++||+..+.-..
T Consensus 80 t~~~~~~~~~~~~~~Ga~~yl~KP~ 104 (122)
T d1kgsa2 80 TALSDVEYRVKGLNMGADDYLPKPF 104 (122)
T ss_dssp ESSCHHHHHHHTCCCCCSEEEESSC
T ss_pred cCCCCHHHHHHHHHcCCceeecCCC
Confidence 544 34445567789999776543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.41 E-value=0.27 Score=42.42 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
.++++|+|.|..|-++|..|. +.|.+|+++|..+.
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~----------~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFA----------KAGKKVTVIDILDR 64 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHhh----------ccceEEEEEEecCc
Confidence 468999999999999999998 89999999987653
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.39 E-value=0.24 Score=43.36 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=33.2
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
..++++|+|.|..|-++|..|. +.|.+|.++|..+..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~----------~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAI----------KANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSSST
T ss_pred cCCEEEEECCchHHHHHHHHHH----------hhCcceeeeeecccc
Confidence 4578999999999999999998 889999999987654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=87.34 E-value=0.44 Score=46.21 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh--HHHHHhcC--CCEEEccCCCHHHHHhc--
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRKLG--FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~--v~~~~~~~--~~~v~GD~t~~~~L~~a-- 601 (791)
.+++ ++|.|. +-+|+.+++.|. ++|++|++.|.+++. .+..++.+ ...+.+|.+|++..+++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la----------~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~ 72 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFA----------VEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGK 72 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHH
Confidence 3444 455566 469999999998 899999999987643 23334444 45678999999877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+.|.+|-..
T Consensus 73 ~~~~~~G~iDilVnnA 88 (247)
T d2ew8a1 73 QVISTFGRCDILVNNA 88 (247)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 234677766544
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.24 Score=49.96 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=48.4
Q ss_pred CE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh-----HH-------HHHhcCCCEEEccCCCHHHH
Q 003861 533 PV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-----VK-------ESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 533 ~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~-----v~-------~~~~~~~~~v~GD~t~~~~L 598 (791)
.| +|.|. |-+|+.+++.|. +.|++|+++|..+.. .+ ..-+.++.++.||.+|++.+
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll----------~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 71 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLL----------EKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCL 71 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhh
Confidence 46 67665 789999999998 789999999986531 11 11124578999999999999
Q ss_pred HhcCC-CCCcEEEEE
Q 003861 599 LSAGI-TSPKAVMIM 612 (791)
Q Consensus 599 ~~agi-~~a~~viv~ 612 (791)
+++-- .+.+.++..
T Consensus 72 ~~~~~~~~~~~v~~~ 86 (347)
T d1t2aa_ 72 VKIINEVKPTEIYNL 86 (347)
T ss_dssp HHHHHHHCCSEEEEC
T ss_pred HHHHhhcccceeeee
Confidence 87632 234444443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.20 E-value=0.37 Score=47.24 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCCCE-EEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-hH----HHHHhcC--CCEEEccCCCHHHHHh
Q 003861 530 GSEPV-VIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VV----KESRKLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~v-iI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-~v----~~~~~~~--~~~v~GD~t~~~~L~~ 600 (791)
.++++ +|.| -+.+|+++++.|. ++|.+|++.+.+++ .. +++++.+ ...+.+|.+|++-.++
T Consensus 5 L~gK~alITGas~GIG~aia~~la----------~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~ 74 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFA----------TEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVIN 74 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 45554 4445 4679999999998 89999999998754 33 3344444 4567899999987665
Q ss_pred c------CCCCCcEEEEEe
Q 003861 601 A------GITSPKAVMIMY 613 (791)
Q Consensus 601 a------gi~~a~~viv~~ 613 (791)
+ ...+-|.+|-..
T Consensus 75 ~~~~~~~~~G~iDiLVnnA 93 (261)
T d1geea_ 75 LVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHhCCCCEeeccc
Confidence 3 223678776654
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.17 E-value=0.69 Score=40.74 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=58.3
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHH----h----cCCCEEEccCCCHHHHHhcCCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~----~----~~~~~v~GD~t~~~~L~~agi~ 604 (791)
++.|+|.|.+|..++..|.. .....+++++|.|+++.+-.. + .....+.. .|.+. .+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~--------~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~~~~-----~~ 66 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLM--------KGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDYAD-----LK 66 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCGGG-----GT
T ss_pred EEEEECcCHHHHHHHHHHHh--------CCCCCEEEEEecccccccchhccccccccccccccccC--CcHHH-----hc
Confidence 47889999999999987751 022357999999998754221 1 11222222 23333 47
Q ss_pred CCcEEEEEeCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 003861 605 SPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 605 ~a~~viv~~~~---------d--~~n~~----~~~~ar~l~p~~~iiara~~~~~ 644 (791)
+||.+|++.+. | ..|.. ++..+++.+|+.. +.-+.||-+
T Consensus 67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~ai-vivvtNPvd 120 (140)
T d1a5za1 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSI-VIVVTNPVD 120 (140)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCE-EEECSSSHH
T ss_pred CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcE-EEEeCCcHH
Confidence 89988888642 2 23443 3456667788754 444666644
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.16 E-value=1 Score=40.78 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=58.0
Q ss_pred CCCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHH----HHHhcCCCC
Q 003861 531 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA----VLLSAGITS 605 (791)
Q Consensus 531 ~~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~----~L~~agi~~ 605 (791)
.+.|+|.| .|.+|+..++..+ ..|.++++++.++++.+.+++.|...+. |.++++ +.+..+=+.
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~----------~~g~~vi~~~~~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAK----------MIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGYG 94 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHH----------HHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCcccccchhhc----------cccccceeeecccccccccccccccccc-cCCccCHHHHHHHHhCCCC
Confidence 34677767 5999999999887 7899999999999999999998877654 444443 343346678
Q ss_pred CcEEEEEeCCH
Q 003861 606 PKAVMIMYTDK 616 (791)
Q Consensus 606 a~~viv~~~~d 616 (791)
+|.++-+.+++
T Consensus 95 ~d~v~d~~g~~ 105 (183)
T d1pqwa_ 95 VDVVLNSLAGE 105 (183)
T ss_dssp EEEEEECCCTH
T ss_pred EEEEEecccch
Confidence 99988888864
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.16 E-value=0.18 Score=43.88 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCc-EEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~-vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
+-+++|+|+|..|+.+++.+.+ +.+++ +..+|.||+...+.- .|.+++.- +-+++.-.++.+.+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~---------~~~~~iv~fiDdd~~k~G~~I-~Gi~V~~~-----~~l~~~~~~~i~ia 67 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGF---------GESFELRGFFDVDPEKVGRPV-RGGVIEHV-----DLLPQRVPGRIEIA 67 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCC---------CSSEEEEEEEESCTTTTTCEE-TTEEEEEG-----GGHHHHSTTTCCEE
T ss_pred CceEEEEcCCHHHHHHHHhHhh---------cCCcEEEEEEeCchHhcCCEE-CCEEEecH-----HHHHHHHhhcccEE
Confidence 4479999999999999998862 45654 567799998754322 36666532 33555555677777
Q ss_pred EEEeCCHHHHHHHHHHHHHhC
Q 003861 610 MIMYTDKKRTIEAVQRLRLAF 630 (791)
Q Consensus 610 iv~~~~d~~n~~~~~~ar~l~ 630 (791)
+.++++.. --.++..+.+.+
T Consensus 68 i~~i~~~~-~~~I~d~l~~~g 87 (126)
T d2dt5a2 68 LLTVPREA-AQKAADLLVAAG 87 (126)
T ss_dssp EECSCHHH-HHHHHHHHHHHT
T ss_pred EEeCCHHH-HHHHHHHHHHcC
Confidence 77776543 334555555553
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.03 E-value=0.96 Score=39.19 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=59.3
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEE-EcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvv-ID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
++.|.|+ ||+|+.+++.+. +.+++++. +|.+.. ..++++|+ +
T Consensus 2 ki~i~G~~GrMG~~i~~~~~----------~~~~~l~~~id~~~~-------------------------~~~~~~DV-v 45 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFS----------EKGHELVLKVDVNGV-------------------------EELDSPDV-V 45 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEEETTEE-------------------------EECSCCSE-E
T ss_pred EEEEECCCCHHHHHHHHHHh----------cCCCeEEEEECCCcH-------------------------HHhccCCE-E
Confidence 4789997 999999999887 66776653 343321 11356784 4
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCcEEE-Ee-cChhhHHHHHHCCCCe--EEcCcHH
Q 003861 611 IMYTDKKRTIEAVQRLRLAFPAIPIYA-RA-QDMMHLLDLKKAGATD--AILENAE 662 (791)
Q Consensus 611 v~~~~d~~n~~~~~~ar~l~p~~~iia-ra-~~~~~~~~L~~~Gad~--Vi~p~~~ 662 (791)
+-.+..+........+.+.+ +++|. .. -++++.+.++++--+. +..|+.-
T Consensus 46 IDFS~p~~~~~~l~~~~~~~--~p~ViGTTG~~~~~~~~i~~~ak~~pv~~a~N~s 99 (128)
T d1vm6a3 46 IDFSSPEALPKTVDLCKKYR--AGLVLGTTALKEEHLQMLRELSKEVPVVQAYSRT 99 (128)
T ss_dssp EECSCGGGHHHHHHHHHHHT--CEEEECCCSCCHHHHHHHHHHTTTSEEEECSCTH
T ss_pred EEecCHHHHHHHHHHHHhcC--CCEEEEcCCCCHHHHHHHHHHHhhCCEEeeeccC
Confidence 66666666666667777765 45444 33 3677788888874332 4566643
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.25 Score=42.67 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 574 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~ 574 (791)
.+++++|+|.|-.|-++|..|. +.|.+|++++..+
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~----------~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILS----------ALGSKTSLMIRHD 55 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSS
T ss_pred cCCEEEEEcCCccHHHHHHHHh----------cCCcEEEEEeecc
Confidence 4579999999999999999998 8999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.69 E-value=0.37 Score=44.50 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCCcEEEEcCChhhHHHHHh----c----CCCEEEccCCCHHHHHhcCCCCCcEEEEEeC
Q 003861 563 VGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSAGITSPKAVMIMYT 614 (791)
Q Consensus 563 ~g~~vvvID~d~~~v~~~~~----~----~~~~v~GD~t~~~~L~~agi~~a~~viv~~~ 614 (791)
.+.+|+.+|.|++.++.+++ . .+.+++||+.+. + ...+.+|.+++...
T Consensus 54 ~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--~--~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 54 RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--L--CKIPDIDIAVVGGS 109 (186)
T ss_dssp TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--H--TTSCCEEEEEESCC
T ss_pred cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--c--cccCCcCEEEEeCc
Confidence 45689999999999877764 3 356788886433 2 34568998876543
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=86.67 E-value=0.48 Score=45.47 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=50.9
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCH--HHHHhcCCCCCcE
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 608 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~--~~L~~agi~~a~~ 608 (791)
+.++|-|. +.+|+.+++.|. ++|++|++.|.|++..+ +.+...+..|.+++ ++.++. .+.|.
T Consensus 5 K~~lVTGas~GIG~aia~~l~----------~~Ga~V~~~~r~~~~l~---~~~~~~~~~Dv~~~~~~~~~~~--g~iD~ 69 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLS----------QEGAEVTICARNEELLK---RSGHRYVVCDLRKDLDLLFEKV--KEVDI 69 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHH---HTCSEEEECCTTTCHHHHHHHS--CCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHH---hcCCcEEEcchHHHHHHHHHHh--CCCcE
Confidence 35777776 569999999998 89999999999988765 45667888999874 344444 47787
Q ss_pred EEEEe
Q 003861 609 VMIMY 613 (791)
Q Consensus 609 viv~~ 613 (791)
+|-..
T Consensus 70 lVnnA 74 (234)
T d1o5ia_ 70 LVLNA 74 (234)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 76654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.61 E-value=0.19 Score=48.75 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred CCEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhc------CCC
Q 003861 532 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 604 (791)
Q Consensus 532 ~~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~a------gi~ 604 (791)
+.++|-|.+ .+|+.+++.|. ++|.+|++.|.+++..+ ....+..|.+|++..+++ ...
T Consensus 8 K~~lITGas~GIG~aia~~la----------~~Ga~V~~~~r~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g 72 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLA----------ADGHKVAVTHRGSGAPK-----GLFGVEVDVTDSDAVDRAFTAVEEHQG 72 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSSCCCT-----TSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEECCcchhc-----CceEEEEecCCHHHHHHHHHHHHHhcC
Confidence 356667775 59999999998 89999999999987644 466789999998876543 123
Q ss_pred CCcEEEEEe
Q 003861 605 SPKAVMIMY 613 (791)
Q Consensus 605 ~a~~viv~~ 613 (791)
+-|.+|-..
T Consensus 73 ~iDiLVnnA 81 (237)
T d1uzma1 73 PVEVLVSNA 81 (237)
T ss_dssp SCSEEEEEC
T ss_pred CceEEEeee
Confidence 567666543
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.48 E-value=1.1 Score=38.98 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=67.1
Q ss_pred cEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEe-
Q 003861 566 PFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA- 639 (791)
Q Consensus 566 ~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara- 639 (791)
+|.+||.|+...+.+ +..|+.+...+ +-.+.++.+.-.+.|.+++-..- +..-+..+..+|+.+|+++||.-.
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~~~~~piI~lT~ 80 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAE-RGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITG 80 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEES-SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEEEEecCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHhhccccccchHHHhhhhhhHHHHHHHHHHhCCCCCEEEEEC
Confidence 588999999875444 45788877643 33566666666789988776433 356678889999999999966644
Q ss_pred -cChhhHHHHHHCCCCeEEcC
Q 003861 640 -QDMMHLLDLKKAGATDAILE 659 (791)
Q Consensus 640 -~~~~~~~~L~~~Gad~Vi~p 659 (791)
.+.+......++||+..+.-
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~K 101 (137)
T d1ny5a1 81 HGTIKTAVEAMKMGAYDFLTK 101 (137)
T ss_dssp TTCHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEeC
Confidence 34577778889999997763
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.41 E-value=0.81 Score=38.98 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=60.4
Q ss_pred cEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEe-
Q 003861 566 PFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA- 639 (791)
Q Consensus 566 ~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara- 639 (791)
.|.+||.|+...+. +++.|+.+.... +-.+.++.+.-.+.|.+++-..-. ..-...+...|+. ++++++.-.
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~~pii~lt~ 81 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEGYDVFEAT-DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFLTG 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEES-SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEC-ChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHhc-CCCcEEEEEC
Confidence 47788888876443 345677776542 335566666667888777765433 2334566677764 678876654
Q ss_pred -cChhhHHHHHHCCCCeEEcCc
Q 003861 640 -QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 -~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.++.....++||+..+.-.
T Consensus 82 ~~~~~~~~~a~~~Ga~dyl~KP 103 (121)
T d1xhfa1 82 RDNEVDKILGLEIGADDYITKP 103 (121)
T ss_dssp CCSHHHHHHHHHHTCSEEEESS
T ss_pred CCCHHHHHHHHHcCCCEEEeCC
Confidence 455666778899999977654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.22 E-value=0.77 Score=41.66 Aligned_cols=64 Identities=20% Similarity=0.062 Sum_probs=51.5
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
..|++++++.-|.|++.-..-..-...++.+|..+ +++|+-+.+++..+.++++|||++++...
T Consensus 18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~ 81 (171)
T d1iz0a2 18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAEEAATYAE 81 (171)
T ss_dssp HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCSEEEEGGG
T ss_pred HHHHHhCCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccccccceeeehhh
Confidence 35778899988988775544456677788888875 68999999999999999999999998653
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.18 E-value=1.4 Score=37.26 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=59.4
Q ss_pred cEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCHH-HHHHHHHHHHHhCCCCcEEEEec
Q 003861 566 PFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 566 ~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d~-~n~~~~~~ar~l~p~~~iiara~ 640 (791)
++.+||.|+...+. +++.|+.+.... +-.+.++.+.-.+.|.+++-..=.. .-...+...|+ .+..+++.-..
T Consensus 3 rILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~a~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~-~~~~piI~lt~ 80 (120)
T d1zgza1 3 HIVIVEDEPVTQARLQSYFTQEGYTVSVTA-SGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE-RSTVGIILVTG 80 (120)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhcCCCEEeeehhhccchhHHHHHHHhc-cCCCeEEEEEc
Confidence 57888888887544 345777776543 3456666666678888877664432 33444555554 45667666443
Q ss_pred --ChhhHHHHHHCCCCeEEcCcH
Q 003861 641 --DMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 641 --~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.+......++||+..+.-..
T Consensus 81 ~~~~~~~~~a~~~Ga~dyl~KP~ 103 (120)
T d1zgza1 81 RSDRIDRIVGLEMGADDYVTKPL 103 (120)
T ss_dssp SCCHHHHHHHHHHTCSEEEESSC
T ss_pred cCCHHHHHHHHHCCCCEEEECCC
Confidence 444555677899998776554
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=86.11 E-value=0.34 Score=41.41 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=32.8
Q ss_pred cCCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 529 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 529 ~~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
...++++|+|.|-.|-++|..|. +.|.+|++++..+.
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~----------~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWA----------RLGAEVTVLEAMDK 56 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEEESSSS
T ss_pred cCCCeEEEECCChHHHHHHHHHH----------HcCCceEEEEeecc
Confidence 35678999999999999999998 89999999986654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.10 E-value=0.44 Score=46.52 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=48.9
Q ss_pred CEEEeCCC-hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHH-----hcC--CCEEEccCCCHHHHHhc--
Q 003861 533 PVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR-----KLG--FPILYGDASRPAVLLSA-- 601 (791)
Q Consensus 533 ~viI~G~G-~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~-----~~~--~~~v~GD~t~~~~L~~a-- 601 (791)
.++|.|.+ -+|+.+|+.|. ++|.+|++.|.+ ++..+++. +.+ ...+.+|.+|++-.+++
T Consensus 6 ~alITGas~GIG~aiA~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 75 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALA----------AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVD 75 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHH----------HTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 45666665 49999999998 899999999986 44444432 233 34567999998877653
Q ss_pred ----CCCCCcEEEEEe
Q 003861 602 ----GITSPKAVMIMY 613 (791)
Q Consensus 602 ----gi~~a~~viv~~ 613 (791)
...+-|.+|-..
T Consensus 76 ~~~~~~G~iDiLVnnA 91 (260)
T d1x1ta1 76 NAVRQMGRIDILVNNA 91 (260)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHHhCCCcEEEeec
Confidence 124677776544
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=86.06 E-value=2.2 Score=36.05 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=66.9
Q ss_pred cEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHh--CCCCcEEEE
Q 003861 566 PFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLA--FPAIPIYAR 638 (791)
Q Consensus 566 ~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l--~p~~~iiar 638 (791)
++.+||.|+...+. +++.|+.+.... +-.+.++.+.-...|.+++-..= +..-...+..+|+. .++++++.-
T Consensus 2 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~~~pvi~l 80 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQNGFQPVEAE-DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVML 80 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEC-SHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-ChHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHhCccCCCCeEEEE
Confidence 47899999987544 456788776543 44677888888899988776442 35677788888874 466787765
Q ss_pred e--cChhhHHHHHHCCCCeEEcCc
Q 003861 639 A--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
. .+.+......++||+..+.-.
T Consensus 81 t~~~~~~~~~~~~~~G~~d~l~KP 104 (121)
T d1zesa1 81 TARGEEEDRVRGLETGADDYITKP 104 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESS
T ss_pred ECCCCHHHHHHHHHCCCCEEEECC
Confidence 4 355666677789999977654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.99 E-value=0.76 Score=44.98 Aligned_cols=75 Identities=12% Similarity=0.047 Sum_probs=51.7
Q ss_pred cCCCC-EEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-hhHH----HHHhcC--CCEEEccCCCHHHHH
Q 003861 529 EGSEP-VVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVK----ESRKLG--FPILYGDASRPAVLL 599 (791)
Q Consensus 529 ~~~~~-viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-~~v~----~~~~~~--~~~v~GD~t~~~~L~ 599 (791)
.++++ ++|.| -+.+|+.+++.|. ++|++|++.|.+. +..+ .+++.+ ...+.+|.+|++.++
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la----------~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~ 84 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELG----------RRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIV 84 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHH
Confidence 45665 45555 5789999999998 8999999998874 3333 344444 446679999988766
Q ss_pred hc------CCCCCcEEEEEe
Q 003861 600 SA------GITSPKAVMIMY 613 (791)
Q Consensus 600 ~a------gi~~a~~viv~~ 613 (791)
+. .....|.+|...
T Consensus 85 ~~~~~~~~~~g~idilV~na 104 (272)
T d1g0oa_ 85 RMFEEAVKIFGKLDIVCSNS 104 (272)
T ss_dssp HHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHhCCCCcccccc
Confidence 53 223567666554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.92 E-value=0.33 Score=45.05 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=52.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
.+.+.|+|+|+.|+.+++.+. ..|.+|++.|...+..+. .+.+.... +-++.+ +++|.|+
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~----------~fg~~v~~~d~~~~~~~~-~~~~~~~~----~l~ell-----~~sDiv~ 103 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIA----------AFGAYVVAYDPYVSPARA-AQLGIELL----SLDDLL-----ARADFIS 103 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------TTTCEEEEECTTSCHHHH-HHHTCEEC----CHHHHH-----HHCSEEE
T ss_pred ceeeeeccccchhHHHHHHhh----------hccceEEeecCCCChhHH-hhcCceec----cHHHHH-----hhCCEEE
Confidence 457999999999999999998 899999999986654332 22333221 224455 4568787
Q ss_pred EEeCCH--HHHHHHHHHHHHhCCC
Q 003861 611 IMYTDK--KRTIEAVQRLRLAFPA 632 (791)
Q Consensus 611 v~~~~d--~~n~~~~~~ar~l~p~ 632 (791)
+..+-. ..++.-....+.+.|+
T Consensus 104 ~~~Plt~~T~~lin~~~l~~mk~~ 127 (184)
T d1ygya1 104 VHLPKTPETAGLIDKEALAKTKPG 127 (184)
T ss_dssp ECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred EcCCCCchhhhhhhHHHHhhhCCC
Confidence 776643 2333334444455444
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=85.74 E-value=0.35 Score=46.82 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=50.1
Q ss_pred CCE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCc-------EEEEcCChhhHHHHH----hcC--CCEEEccCCCHH
Q 003861 532 EPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-------FVAFDLNPSVVKESR----KLG--FPILYGDASRPA 596 (791)
Q Consensus 532 ~~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~-------vvvID~d~~~v~~~~----~~~--~~~v~GD~t~~~ 596 (791)
+|| +|-|. +.+|+.+|+.|. ++|++ |++.+.+++..+++. +.| ...+.+|.+|++
T Consensus 1 K~VvlITGas~GIG~aia~~la----------~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~ 70 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFA----------RAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMA 70 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHH----------HHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH----------HhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 465 45577 459999999998 78887 899999998876654 334 345678999988
Q ss_pred HHHhc------CCCCCcEEEEE
Q 003861 597 VLLSA------GITSPKAVMIM 612 (791)
Q Consensus 597 ~L~~a------gi~~a~~viv~ 612 (791)
-.+++ ...+.|.+|-.
T Consensus 71 ~v~~~~~~~~~~~g~iDilvnn 92 (240)
T d2bd0a1 71 DVRRLTTHIVERYGHIDCLVNN 92 (240)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEC
T ss_pred HHHHHHHHHHHHcCCcceeecc
Confidence 65542 23467766544
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=85.74 E-value=0.23 Score=50.92 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=48.5
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh-----hhHHHH------HhcCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-----SVVKES------RKLGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~-----~~v~~~------~~~~~~~v~GD~t~~~~L~ 599 (791)
+.++|.| -|-+|+.+++.|. +.|++|+++|..+ ++++.+ ....+..+.||.+|.+.++
T Consensus 2 K~vLITGatGfiGs~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLL----------EKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLT 71 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEECC---------------------CCEEECCCCSSCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHH
Confidence 4566777 6889999999998 7899999999854 333322 2346788899999999887
Q ss_pred hcC-CCCCcEEEEEe
Q 003861 600 SAG-ITSPKAVMIMY 613 (791)
Q Consensus 600 ~ag-i~~a~~viv~~ 613 (791)
++= -.+.|.|+-+.
T Consensus 72 ~~~~~~~~d~v~h~a 86 (357)
T d1db3a_ 72 RILREVQPDEVYNLG 86 (357)
T ss_dssp HHHHHHCCSEEEECC
T ss_pred HHHhccCCCEEEEee
Confidence 641 12456666553
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=85.54 E-value=0.23 Score=48.23 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCCh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP 574 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~ 574 (791)
.|+|+|.|-.|..+|..|. ++|.+|+++|.++
T Consensus 6 DvvIIGaGi~Gls~A~~La----------~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLA----------KENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHH----------HTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HCCCcEEEEeCCC
Confidence 3999999999999999998 8899999999875
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.44 Score=45.46 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
++.|+|.|. |-+|+.++++|. +.|. +|.++..++.....-.........+|.++.+.+.++- +.+|
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll----------~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~-~~~d 82 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEIL----------EQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF-QGHD 82 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH----------HHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG-SSCS
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------hCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccc-cccc
Confidence 346888876 999999999998 6674 7999998776544334456778889999988887553 5689
Q ss_pred EEEEEeC
Q 003861 608 AVMIMYT 614 (791)
Q Consensus 608 ~viv~~~ 614 (791)
+++.+.+
T Consensus 83 ~vi~~~~ 89 (232)
T d2bkaa1 83 VGFCCLG 89 (232)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 8887754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=85.34 E-value=0.58 Score=45.37 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=43.3
Q ss_pred CCEEEeCC-Ch--hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhH-HHHHh---cCCCEEEccCCCHHH
Q 003861 532 EPVVIVGF-GQ--MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRK---LGFPILYGDASRPAV 597 (791)
Q Consensus 532 ~~viI~G~-G~--~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v-~~~~~---~~~~~v~GD~t~~~~ 597 (791)
+.++|.|. |. +|+++|+.|. ++|.+|++.+.|+++. ++..+ .....++.|.++++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la----------~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~ 69 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQ----------EQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEH 69 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHH----------HTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH----------HcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccc
Confidence 46888884 43 9999999998 8999999999988765 44443 236678899998753
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.29 E-value=1.8 Score=36.61 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=64.8
Q ss_pred cEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEec
Q 003861 566 PFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 566 ~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
+|.+||.|+...+. +++.|+.+...+ +-.+.++.+.-++.|.+++-..= +.+-...+..+|+.+|+++++.-..
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~G~~v~~a~-~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~pvi~lt~ 80 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAE-DAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHhcccceeehhccCCCchhHHHHHHHHhcCcccceEeeec
Confidence 47889999887544 345788776543 33556666666788988776543 2455778899999988888666544
Q ss_pred --ChhhHHHHHHCCCCeEEcCc
Q 003861 641 --DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 641 --~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+......++||+..+.-.
T Consensus 81 ~~~~~~~~~a~~~Ga~~yl~KP 102 (119)
T d2pl1a1 81 RESWQDKVEVLSAGADDYVTKP 102 (119)
T ss_dssp CCCHHHHHHHHHTTCSEEEESS
T ss_pred cCCHHHHHHHHHcCCCEEEECC
Confidence 34445667789999976644
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=85.02 E-value=0.72 Score=44.90 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=39.9
Q ss_pred CCEEEeCC-C--hhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHH---Hh--cCCCEEEccCCCHHHHH
Q 003861 532 EPVVIVGF-G--QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES---RK--LGFPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~-G--~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~---~~--~~~~~v~GD~t~~~~L~ 599 (791)
+.++|.|. | -+|+++|+.|. ++|.+|++.|.|++..++. .+ ....+...|.++++..+
T Consensus 6 K~alITGaag~~GIG~AiA~~la----------~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~ 71 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCF----------NQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFK 71 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHH----------TTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHH
Confidence 35777785 4 49999999998 9999999999987543333 32 22445556666655443
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=84.95 E-value=3 Score=35.10 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=62.6
Q ss_pred CcEEEEcCChhhHHHHH----hcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 565 WPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~~----~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara 639 (791)
++|.+||.|+...+.++ +.|...... +-.+.|++ .++.|.++.-..= +..-..++..+|+.+|+++|+.-.
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~g~v~~~~--~~~~al~~--~~~~dlillD~~mP~~~G~~~~~~lr~~~~~~~ii~it 78 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQLGRVKTFL--TGEDFLND--EEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLT 78 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTEEEEEES--SHHHHHHC--CSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhCCEEEEEC--CHHHHHhc--CCCCCEEEEeCcccccchhHHHHHHhhcCCCCcEEEEe
Confidence 46899999998765543 455322233 33556653 4578987776542 344577889999999998866655
Q ss_pred --cChhhHHHHHHCCCCeEEcCcH
Q 003861 640 --QDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 640 --~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
.+.+......++||+..+.-..
T Consensus 79 ~~~~~~~~~~a~~~Ga~dyl~KP~ 102 (120)
T d1p2fa2 79 LLSDDESVLKGFEAGADDYVTKPF 102 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSC
T ss_pred cCCCHHHHHHHHHCCCCEEEECCC
Confidence 4566667778899998776543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.87 E-value=0.3 Score=49.04 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hH-------HHHHhcCCCEEEccCCCHHHH
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VV-------KESRKLGFPILYGDASRPAVL 598 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v-------~~~~~~~~~~v~GD~t~~~~L 598 (791)
+.++|.|. |-+|+.+++.|. ++|++|+++|.... +. ..........+.+|.++.+.+
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~ 71 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLL----------GKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSL 71 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHH
Confidence 45677765 999999999998 89999999997432 21 112234567889999999887
Q ss_pred Hhc-CCCCCcEEEEEe
Q 003861 599 LSA-GITSPKAVMIMY 613 (791)
Q Consensus 599 ~~a-gi~~a~~viv~~ 613 (791)
+++ .-.+.|.|+-+.
T Consensus 72 ~~~~~~~~~D~Vih~A 87 (339)
T d1n7ha_ 72 RRWIDVIKPDEVYNLA 87 (339)
T ss_dssp HHHHHHHCCSEEEECC
T ss_pred HHHHhhhccchhhhcc
Confidence 764 445778776554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=84.79 E-value=0.64 Score=42.71 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=55.7
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a 601 (791)
.++++|+|.|-.++.++..|. +.|. ++.+++.++++.+++.+ .+..+...|..+.+-+.+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~----------~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGA----------IEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 87 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHH----------HTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHh----------hcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhh
Confidence 358999999999999999998 5555 68899999877654321 3455667888888877654
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
..++|.+|-+|+
T Consensus 88 -~~~~diiIN~Tp 99 (182)
T d1vi2a1 88 -LASADILTNGTK 99 (182)
T ss_dssp -HHTCSEEEECSS
T ss_pred -hcccceeccccC
Confidence 478898887876
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.59 E-value=0.53 Score=45.49 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=53.3
Q ss_pred CCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCC--cEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHHhc----
Q 003861 532 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA---- 601 (791)
Q Consensus 532 ~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~--~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~~a---- 601 (791)
+.++|-|. +-+|+++++.|. ++|. .|++...|+++.+++++ ...+++..|.+|++..+++
T Consensus 4 KtilITGassGIG~a~a~~la----------~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i 73 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLV----------KDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHH----------TCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHH
Confidence 56777777 579999999998 7785 57777889998887765 2466888999998766543
Q ss_pred ----CCCCCcEEEEEeC
Q 003861 602 ----GITSPKAVMIMYT 614 (791)
Q Consensus 602 ----gi~~a~~viv~~~ 614 (791)
|-..-|.+|...+
T Consensus 74 ~~~~~~~~idilinnAG 90 (250)
T d1yo6a1 74 GEIVGSDGLSLLINNAG 90 (250)
T ss_dssp HHHHGGGCCCEEEECCC
T ss_pred HHHhCCCCeEEEEEcCc
Confidence 2334676665543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.52 E-value=0.43 Score=47.40 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=47.9
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh-----hHHHHH-hcCCCEEEccCCCHHHHHhcCCC
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-KLGFPILYGDASRPAVLLSAGIT 604 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~-----~v~~~~-~~~~~~v~GD~t~~~~L~~agi~ 604 (791)
.|+|.|. |-+|+.+++.|. +.|++|..+|.+.. +++.+. +.++.++.+|.+|.+.+++.-..
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll----------~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 70 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLL----------EKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIK 70 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcc
Confidence 5778876 889999999998 78999999997553 233332 34678899999999988875333
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.50 E-value=2.4 Score=35.93 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=65.3
Q ss_pred cEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEec
Q 003861 566 PFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQ 640 (791)
Q Consensus 566 ~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara~ 640 (791)
.|.+||.|+...+.+ ++.|+.+...+ +-.+.++.+.-.+.|.+++-..=+ ..-...+..+|+.+|+++||.-..
T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~~~~~piI~~t~ 83 (123)
T d1krwa_ 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFE-NGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTA 83 (123)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTTCEEEEES-SSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHHSSSCCEEESCC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEeC-CHHHHHHHHHhCCCCEEEehhhcCCchHHHHHHHHHHhCCCCeEEEEec
Confidence 478888888775443 45677776543 345677777778899887765432 345667888999999999776444
Q ss_pred --ChhhHHHHHHCCCCeEEcCc
Q 003861 641 --DMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 641 --~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.+......++||+..+.-.
T Consensus 84 ~~~~~~~~~a~~~Ga~dyl~KP 105 (123)
T d1krwa_ 84 HSDLDAAVSAYQQGAFDYLPKP 105 (123)
T ss_dssp CSCHHHHHHHHHHTEEEECSSC
T ss_pred CCCHHHHHHHHHcCCCeEEeCc
Confidence 44556677889999876543
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.43 E-value=3.5 Score=35.42 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCCCCcEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHh-----C
Q 003861 561 NTVGWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLA-----F 630 (791)
Q Consensus 561 ~~~g~~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l-----~ 630 (791)
+-.|.+|.+||.|+...+. +++.|+.+...+- -.+.++... ++.|.+++-..=. .+-..++..+|+. .
T Consensus 4 d~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~-g~eal~~l~-~~~dlillD~~mP~~dG~el~~~ir~~~~~~~~ 81 (134)
T d1dcfa_ 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSS-NEECLRVVS-HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRH 81 (134)
T ss_dssp CCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS-HHHHHHHCC-TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCS
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECC-HHHHHHHhh-cCCCeEEEEeccCCCchHHHHHHHHHhcccccC
Confidence 4578899999999886433 3567887765432 256677665 5788877655432 3345677777764 2
Q ss_pred CCCcEEEEe--cChhhHHHHHHCCCCeEEcCc
Q 003861 631 PAIPIYARA--QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 631 p~~~iiara--~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
+.++||+-. .+.+..+...++|+|.++.-.
T Consensus 82 ~~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP 113 (134)
T d1dcfa_ 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKP 113 (134)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 334566543 356677788899999877644
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=84.41 E-value=0.28 Score=47.24 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
++|+|+|.|.-|-..|..|. +.|++|+++|.++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La----------~~G~~V~vlE~~~~ 35 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLK----------IHGLNVTVFEAEGK 35 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTSCEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCCEEEEeCCCC
Confidence 46999999999999999998 89999999998764
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.23 E-value=0.39 Score=44.02 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=52.2
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCC-hhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d-~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.+.|+|||..|+.=|..|+ +.|.+|++==.. ....+++++.|+.+..- .+| ++.||.+
T Consensus 16 ~k~IaViGYGsQG~AhAlNLr----------DSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~--------~eA-~~~aDii 76 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLK----------DSGVDVTVGLRSGSATVAKAEAHGLKVADV--------KTA-VAAADVV 76 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHH----------HTTCCEEEECCTTCHHHHHHHHTTCEEECH--------HHH-HHTCSEE
T ss_pred CCEEEEEeeCcHhHHHHhhhh----------hcCCCEEEEcCCCCccHHHHhhhccccccH--------HHH-hhhcCee
Confidence 568999999999999999999 889998775443 34578888899988532 222 5789999
Q ss_pred EEEeCCH
Q 003861 610 MIMYTDK 616 (791)
Q Consensus 610 iv~~~~d 616 (791)
+..++|.
T Consensus 77 m~L~PD~ 83 (182)
T d1np3a2 77 MILTPDE 83 (182)
T ss_dssp EECSCHH
T ss_pred eeecchH
Confidence 9999864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.21 E-value=0.21 Score=49.22 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=32.8
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 575 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~ 575 (791)
.+++|+|||.|..|-..|..|. +.|++|+++|.++.
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~----------~~G~~V~vlE~~~~ 64 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLA----------GAGHQVTVLEASER 64 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHH----------HHTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCCEEEEeCCCC
Confidence 4568999999999999999998 78999999998765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.00 E-value=0.55 Score=45.69 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=42.9
Q ss_pred CCCC-EEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEE-cCChhhHHH----HHhcC--CCEEEccCCCHHHHHh
Q 003861 530 GSEP-VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKE----SRKLG--FPILYGDASRPAVLLS 600 (791)
Q Consensus 530 ~~~~-viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~~v~~----~~~~~--~~~v~GD~t~~~~L~~ 600 (791)
+.++ ++|.|. +.+|+++++.|. ++|++|++. +.+++..++ +++.| ...+.+|.+|++..++
T Consensus 4 L~GK~alITGas~GIG~aia~~la----------~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~ 73 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELG----------RRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVA 73 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHH----------HTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHH
Confidence 4544 566666 559999999998 899999986 455555443 34444 4467899999877654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=83.91 E-value=0.49 Score=40.15 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
..++++|+|.|..|-++|..|. +.|.+|.+++..+..
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~----------~~g~~vt~i~~~~~~ 57 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFN----------ATGRRTVMLVRTEPL 57 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcchhheEeeccchh
Confidence 3579999999999999999998 899999999987653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.91 E-value=0.31 Score=49.10 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=33.1
Q ss_pred CCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 531 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 531 ~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
.++++|+|.|-.|-..|..|. +.|++|+++|.++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~----------k~G~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLA----------EKGHQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHH----------TTTCEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHH----------hCCCCEEEEECCCCC
Confidence 457999999999999999998 789999999999875
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.88 E-value=0.3 Score=44.81 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChhh
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV 576 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~~ 576 (791)
..++|+|+|.|..|-..|..|. +.|. +|+++|..+..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~----------~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLA----------RLGYSDITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHH----------HTTCCCEEEEESSSSC
T ss_pred CCCEEEEECChHHHHHHHHHHH----------HCCCCeEEEEEecCcc
Confidence 4678999999999999999998 7898 69999987654
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=83.76 E-value=1.3 Score=38.40 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=66.8
Q ss_pred cEEEEcCChhhHHHHH----hcCCCEEEccCCC-HHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 003861 566 PFVAFDLNPSVVKESR----KLGFPILYGDASR-PAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 566 ~vvvID~d~~~v~~~~----~~~~~~v~GD~t~-~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara 639 (791)
+|.+||.|+...+.++ ..+...+.+.+++ .+.++.+.-.+.|.+++-..=. .+-+.++..+|+.+|+.++++-.
T Consensus 4 ~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~~G~el~~~ir~~~~~~~vivlt 83 (138)
T d1a04a2 4 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFS 83 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 5899999988755544 2343345566655 4566666667899887765543 45678899999999998855543
Q ss_pred --cChhhHHHHHHCCCCeEEcCc
Q 003861 640 --QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 --~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.+......++||+..+.-.
T Consensus 84 ~~~~~~~~~~a~~~Ga~~yl~Kp 106 (138)
T d1a04a2 84 VSNHEEDVVTALKRGADGYLLKD 106 (138)
T ss_dssp CCCCHHHHHHHHHTTCSEEEETT
T ss_pred EECCHHHHHHHHHcCCCEEEECC
Confidence 566777778899999877654
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=83.67 E-value=1.4 Score=37.63 Aligned_cols=94 Identities=20% Similarity=0.151 Sum_probs=67.2
Q ss_pred cEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEEe-
Q 003861 566 PFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYARA- 639 (791)
Q Consensus 566 ~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiara- 639 (791)
.|.+||.|+...+.+ ++.|+.+...+ +-.+.|+.+.-.+.|.+++-..= +..-...+..+|+..|..+|+.-.
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~~ii~lt~ 82 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAGFEVETFD-CASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 82 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEES-SHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccccc-cHHHHHHHHHhcCCCEeehhhhcccchhHHHHHHHHhhCCCCeEEEEEE
Confidence 588899888875443 45788877665 56778888877889988776642 345566788889988888865533
Q ss_pred -cChhhHHHHHHCCCCeEEcCc
Q 003861 640 -QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 -~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.+......++||+..+.-.
T Consensus 83 ~~~~~~~~~a~~~Ga~dyl~KP 104 (128)
T d1yioa2 83 HGDIPMTVRAMKAGAIEFLPKP 104 (128)
T ss_dssp CTTSCCCHHHHHTTEEEEEESS
T ss_pred ECCHHHHHHHHHCCCCEEEECC
Confidence 345667778899999876544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.66 E-value=0.79 Score=41.56 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEE
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 609 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~v 609 (791)
.+.++|.|. |.+|+..++..+ ..|.+|++++.++++.+.+++.|...+. |..+. ..+.-+-+.+|.+
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak----------~~G~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~-~~~~~~~~g~D~v 95 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVAR----------AMGLRVLAAASRPEKLALPLALGAEEAA-TYAEV-PERAKAWGGLDLV 95 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHH----------HTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGH-HHHHHHTTSEEEE
T ss_pred CCEEEEEeccccchhhhhhhhc----------ccccccccccccccccccccccccceee-ehhhh-hhhhhcccccccc
Confidence 456888785 999999999887 7899999999999999999998876654 43332 2222344678987
Q ss_pred EEEeCC
Q 003861 610 MIMYTD 615 (791)
Q Consensus 610 iv~~~~ 615 (791)
+=+.++
T Consensus 96 ~d~~G~ 101 (171)
T d1iz0a2 96 LEVRGK 101 (171)
T ss_dssp EECSCT
T ss_pred ccccch
Confidence 766654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.60 E-value=0.4 Score=48.76 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=53.8
Q ss_pred CCEEEeC-CChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEE
Q 003861 532 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 610 (791)
Q Consensus 532 ~~viI~G-~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~vi 610 (791)
..|+|.| .|-+|+.+++.|. ++|++|+++|..+..-........+...+|.++.+.+.++ .+++|.|+
T Consensus 16 MKILVTGgsGfIGs~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~Vi 84 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLK----------HEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKV-TEGVDHVF 84 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHH-HTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHH-hhcCCeEe
Confidence 3588887 5999999999998 8999999998754432222234567889999999988875 36788877
Q ss_pred EEe
Q 003861 611 IMY 613 (791)
Q Consensus 611 v~~ 613 (791)
-+.
T Consensus 85 h~a 87 (363)
T d2c5aa1 85 NLA 87 (363)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.44 E-value=1.5 Score=37.05 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=65.3
Q ss_pred CcEEEEcCChhhHHHH----HhcCCCEEEccCCCHHHHHhcCCCCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCcEEEEe
Q 003861 565 WPFVAFDLNPSVVKES----RKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 565 ~~vvvID~d~~~v~~~----~~~~~~~v~GD~t~~~~L~~agi~~a~~viv~~~~d-~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++.+||.|+...+.+ ++.|+.+... .+-.+.++.+.-.+.|.+++-..=. ..-...+...|+.++..+|++-.
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~~~~~~ii~lt 81 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVITA-SDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 81 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE-SSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHhcccccEEEecccccCCCCchhhhhhhccCCCCEEEEEE
Confidence 3688999888875443 4578876654 2334566666667899887766443 34567788889988888866543
Q ss_pred --cChhhHHHHHHCCCCeEEcCc
Q 003861 640 --QDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 640 --~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.+.+......++||+..+.-.
T Consensus 82 ~~~~~~~~~~~~~~Ga~~yl~KP 104 (121)
T d1mvoa_ 82 AKDEEFDKVLGLELGADDYMTKP 104 (121)
T ss_dssp CTTCCCCHHHHHHTTCCEEEESS
T ss_pred eeCCHHHHHHHHHCCCCEEEECC
Confidence 455667778899999866543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.81 E-value=1.5 Score=39.10 Aligned_cols=64 Identities=22% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHH
Q 003861 596 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 596 ~~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~ 662 (791)
..+++++++.-+.+++. +.-..-..+++.+|..+ .+|++...+++..+..++.|||+++++..+
T Consensus 18 ~al~~~~~~~g~~VlV~-GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~ 81 (166)
T d1llua2 18 KGLKQTNARPGQWVAIS-GIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGASLTVNARQE 81 (166)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETTTS
T ss_pred HHHHHhCCCCCCEEEEe-eccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCccccccccch
Confidence 45678898887777664 44456777889999886 589999999999999999999999987653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.65 E-value=0.6 Score=45.71 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCEEEeCCCh-hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhc-----C--CCEEEccCCCHHHHH
Q 003861 532 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----G--FPILYGDASRPAVLL 599 (791)
Q Consensus 532 ~~viI~G~G~-~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~-----~--~~~v~GD~t~~~~L~ 599 (791)
+.++|-|.++ +|+++|+.|. ++|.+|++++.|++..+++.++ + ...+..|.++++..+
T Consensus 15 K~alITGassGIG~aiA~~la----------~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLA----------KMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAE 80 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHH----------HTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHH
Confidence 3567777755 9999999998 8999999999999988776431 2 335566777666554
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=82.51 E-value=0.34 Score=45.31 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCC-cEEEEcCChh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS 575 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~-~vvvID~d~~ 575 (791)
+|+|+|.|..|-..|..|. +.|+ +|+|+|.++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~----------~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLS----------EAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHH----------HTTCCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHH----------hCCCCcEEEEECCCC
Confidence 6999999999999999998 7896 7999999865
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.44 E-value=0.98 Score=41.22 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=51.8
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHHH
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAET 663 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~~ 663 (791)
+.++++.=|.|++.-..-..-..+++.+|..+ .++|+.+.++++.+.+++.|+|++|.++.+.
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~ 85 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFDAAFNYKTVN 85 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTSCS
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhhhhccccccc
Confidence 45678877888777666667777888888876 6899999999999999999999999877543
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=82.24 E-value=2.3 Score=38.53 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=50.2
Q ss_pred hcCCCEEEc--cCCCHHHHHhcCCCCCcEEEEEeCCHH---HHHHHHHHHHHhC-CCCcEEEEe-cChhhHHHHHHCCCC
Q 003861 582 KLGFPILYG--DASRPAVLLSAGITSPKAVMIMYTDKK---RTIEAVQRLRLAF-PAIPIYARA-QDMMHLLDLKKAGAT 654 (791)
Q Consensus 582 ~~~~~~v~G--D~t~~~~L~~agi~~a~~viv~~~~d~---~n~~~~~~ar~l~-p~~~iiara-~~~~~~~~L~~~Gad 654 (791)
+.|+.+++. |.+-+++.+.+--+++|.+.+++.+.. .--.++..+|+.+ ++++|++-- --+++.+.|+++|+|
T Consensus 63 ~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~ 142 (168)
T d7reqa2 63 DLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAV 142 (168)
T ss_dssp HTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEE
T ss_pred hCCcceecCCCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCC
Confidence 344444442 234455566666678998877765532 2223566677764 556777643 245666889999999
Q ss_pred eEEcCcH
Q 003861 655 DAILENA 661 (791)
Q Consensus 655 ~Vi~p~~ 661 (791)
.|+.|..
T Consensus 143 ~iF~pgt 149 (168)
T d7reqa2 143 EIYTPGT 149 (168)
T ss_dssp EEECTTC
T ss_pred EEECcCC
Confidence 9988763
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=82.21 E-value=0.23 Score=49.85 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=39.1
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCC
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 603 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi 603 (791)
.|+|+|.|..|-.+|..|.+. .+...|++|+++|.+++... .+ ..+.-++.--+.|++.|+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~-----~~~~~G~~v~vlEr~~~~~~----~~-r~~~l~~~~~~~L~~lGl 69 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEY-----VRQKPDLKVRIIDKRSTKVY----NG-QADGLQCRTLESLKNLGL 69 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----HHHSTTCCEEEECSSSSCCC----SC-SCCEECHHHHHHHHTTTC
T ss_pred CEEEECcCHHHHHHHHHHHhc-----ccccCCCcEEEEcCCCCCCc----CC-eEEEECHHHHHHHHHcCC
Confidence 499999999999999999300 00057999999998875421 11 112222333456667775
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=82.13 E-value=1.2 Score=40.54 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=50.5
Q ss_pred HHHhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcHH
Q 003861 597 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAE 662 (791)
Q Consensus 597 ~L~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~~ 662 (791)
.++.++++.=+.|++. +.-..=+.+++.+|..++. +|++...+++..+..++.|||++++++.+
T Consensus 19 a~~~a~~~~g~~VlI~-GaG~vGl~~~q~ak~~Ga~-~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~ 82 (174)
T d1jqba2 19 GAELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAG-RIIGVGSRPICVEAAKFYGATDILNYKNG 82 (174)
T ss_dssp HHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCS-CEEEECCCHHHHHHHHHHTCSEEECGGGS
T ss_pred HHHHhCCCCCCEEEEE-cCCcchhhhhhhhhccccc-ccccccchhhhHHHHHhhCccccccccch
Confidence 4577888877766664 4445677889999987753 78998899999999999999999988764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.08 E-value=0.33 Score=38.52 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
++-|+|.|+.|+-++..=. ..|+++.++|.|++.
T Consensus 3 ~vgIlG~GQLgrMl~~Aa~----------~LG~~v~vldp~~~~ 36 (78)
T d3etja2 3 QVCVLGNGQLGRMLRQAGE----------PLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEBCSHHHHHHHHHHG----------GGTEEEEEECTTSCG
T ss_pred EEEEEcCCHHHHHHHHHHH----------HcCCEEEEEcCCCCC
Confidence 6889999999999999987 899999999988764
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.95 E-value=0.61 Score=44.99 Aligned_cols=73 Identities=15% Similarity=-0.003 Sum_probs=51.8
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHhc-----
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA----- 601 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~a----- 601 (791)
.++|-|. .-+|+++|+.|.+ -.+.|+.|++.+.|++..+++++ ....++..|.+|++..+++
T Consensus 4 tilITGas~GIG~a~a~~l~~-------~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 76 (248)
T d1snya_ 4 SILITGCNRGLGLGLVKALLN-------LPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIE 76 (248)
T ss_dssp EEEESCCSSHHHHHHHHHHHT-------SSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------HHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhH
Confidence 5888888 5699999998841 01579999999999987655542 2466788999998766543
Q ss_pred ---CCCCCcEEEEE
Q 003861 602 ---GITSPKAVMIM 612 (791)
Q Consensus 602 ---gi~~a~~viv~ 612 (791)
.-.+.|.+|-.
T Consensus 77 ~~~~~~~iDiLvnN 90 (248)
T d1snya_ 77 GVTKDQGLNVLFNN 90 (248)
T ss_dssp HHHGGGCCSEEEEC
T ss_pred HHhhcCCcceEEee
Confidence 22456766544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.89 E-value=0.88 Score=44.52 Aligned_cols=72 Identities=10% Similarity=-0.065 Sum_probs=50.7
Q ss_pred CCEEEe-CC-ChhHHHHHHHhhhhccCCCCCCC-CCCcEEEEcCChhhHHHHH----hc--CCCEEEccCCCHHHHHhc-
Q 003861 532 EPVVIV-GF-GQMGQVLANLLSAPLASGSDGNT-VGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA- 601 (791)
Q Consensus 532 ~~viI~-G~-G~~G~~la~~L~~~~~~~~~~~~-~g~~vvvID~d~~~v~~~~----~~--~~~~v~GD~t~~~~L~~a- 601 (791)
+||+|+ |. +-+|+.+|+.|. + .|..|++.+.|+++.+++. +. ...++..|.+|++..+++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la----------~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~ 72 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLC----------RLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 72 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHH----------HHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHH----------HhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHH
Confidence 467544 44 679999999997 5 4899999999999866543 33 466788999998866532
Q ss_pred -----CCCCCcEEEEEe
Q 003861 602 -----GITSPKAVMIMY 613 (791)
Q Consensus 602 -----gi~~a~~viv~~ 613 (791)
...+-|.+|-..
T Consensus 73 ~~~~~~~g~iDiLVnNA 89 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNA 89 (275)
T ss_dssp HHHHHHHSSEEEEEECC
T ss_pred HHHHHhcCCcEEEEEcC
Confidence 223567665443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=81.88 E-value=0.35 Score=45.48 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHhcCCCEEEccCCCHHHHHhcCCCCCcEEEE
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 611 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~~viv 611 (791)
+.+.|+|+|++|+.+++.|+ ..|.+|.+.|..+.... +..+. + .+-++.++ ++|.+++
T Consensus 46 ktvgIiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~~~---~~~~~--~--~~l~~l~~-----~~D~v~~ 103 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFK----------GFGAKVIAYDPYPMKGD---HPDFD--Y--VSLEDLFK-----QSDVIDL 103 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHH----------HTTCEEEEECSSCCSSC---CTTCE--E--CCHHHHHH-----HCSEEEE
T ss_pred eeeeeeeccccccccccccc----------ccceeeeccCCccchhh---hcchh--H--HHHHHHHH-----hccccee
Confidence 57999999999999999998 88999999998654311 11111 1 12233443 4787777
Q ss_pred EeCCH--HHHHHHHHHHHHhCCCCcEE
Q 003861 612 MYTDK--KRTIEAVQRLRLAFPAIPIY 636 (791)
Q Consensus 612 ~~~~d--~~n~~~~~~ar~l~p~~~ii 636 (791)
..+-. ..++.-....+.+.++..+|
T Consensus 104 ~~plt~~T~~li~~~~l~~mk~~a~lI 130 (199)
T d1dxya1 104 HVPGIEQNTHIINEAAFNLMKPGAIVI 130 (199)
T ss_dssp CCCCCGGGTTSBCHHHHHHSCTTEEEE
T ss_pred eecccccccccccHHHhhccCCceEEE
Confidence 76543 34444456666776654433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=81.87 E-value=0.44 Score=44.57 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=31.3
Q ss_pred CCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 532 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 532 ~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
+++.|+|+|++|+.+++.|+ ..|.+|...|...+.
T Consensus 50 ktvgIiG~G~IG~~va~~l~----------~fg~~v~~~d~~~~~ 84 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAK----------AFGFNVLFYDPYLSD 84 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHH----------TTTCEEEEECTTSCT
T ss_pred ceEEEeccccccccceeeee----------ccccceeeccCcccc
Confidence 47999999999999999998 899999999986553
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=81.82 E-value=0.76 Score=46.32 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=54.5
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh--------cCCCEEEccCCCHHHHHhc
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 601 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~--------~~~~~v~GD~t~~~~L~~a 601 (791)
.+.|+|.|. |-+|..+++.|. ++|++|++...|++..+.+.+ .....+.||.+|++.+.++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll----------~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLL----------EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred cCEEEEECCCCHHHHHHHHHHH----------HCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh
Confidence 457888877 779999999998 789999998888776554431 1234577999999988764
Q ss_pred CCCCCcEEEEEeC
Q 003861 602 GITSPKAVMIMYT 614 (791)
Q Consensus 602 gi~~a~~viv~~~ 614 (791)
+.+++.++....
T Consensus 81 -~~~~~~v~~~a~ 92 (342)
T d1y1pa1 81 -IKGAAGVAHIAS 92 (342)
T ss_dssp -TTTCSEEEECCC
T ss_pred -cccchhhhhhcc
Confidence 567887765543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.80 E-value=0.41 Score=47.73 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.4
Q ss_pred CEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh
Q 003861 533 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 576 (791)
Q Consensus 533 ~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~ 576 (791)
.++|+|.|..|-.+|+.|+ +.|++|+++|.++..
T Consensus 3 dv~IIGaG~sGl~~A~~L~----------~~g~~V~iiEk~~~i 36 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELK----------KLNKKVLVIEKRNHI 36 (298)
T ss_dssp EEEEECCSHHHHHHHHHHG----------GGTCCEEEECSSSSS
T ss_pred cEEEECCcHHHHHHHHHHH----------hCCCcEEEEECCCCc
Confidence 4899999999999999998 789999999998875
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=81.62 E-value=0.43 Score=40.74 Aligned_cols=95 Identities=7% Similarity=0.023 Sum_probs=64.1
Q ss_pred CcEEEEcCChhhHHH----HHhcCCCEEEccCCCHHHHHhc-CCCCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCcEEEE
Q 003861 565 WPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSA-GITSPKAVMIMYTD-KKRTIEAVQRLRLAFPAIPIYAR 638 (791)
Q Consensus 565 ~~vvvID~d~~~v~~----~~~~~~~~v~GD~t~~~~L~~a-gi~~a~~viv~~~~-d~~n~~~~~~ar~l~p~~~iiar 638 (791)
.++.+||.|+...+. +++.|+.+...+ +-.+.++.+ .....|.+++-..= +..-..++..+|+.+++++|+.-
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~-~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~~~~~pii~l 81 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHP-SGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLIL 81 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-SHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCeEEEC-CHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 468999999987544 456888877654 224555544 34568888776654 24577888999999888887765
Q ss_pred ecChhhHHHHHHCCCCeEEcCc
Q 003861 639 AQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 639 a~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
....+......+.|+|++.=|-
T Consensus 82 t~~~~~~~~~~~~~~dyl~KP~ 103 (118)
T d2b4aa1 82 TTGRHELIESSEHNLSYLQKPF 103 (118)
T ss_dssp ESCC--CCCCSSSCEEEEESSC
T ss_pred ECCccHHHHHhhcCCCEEECCC
Confidence 5444444455677888877665
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=1.1 Score=43.03 Aligned_cols=60 Identities=23% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCCE-EEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh---cCCCEEEccCCCHHHHH
Q 003861 530 GSEPV-VIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLL 599 (791)
Q Consensus 530 ~~~~v-iI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~---~~~~~v~GD~t~~~~L~ 599 (791)
.++++ +|.|. +.+|+.+++.|. ++|++|+++|.+++..+...+ ........|..+.+..+
T Consensus 3 lkGKvalITGas~GIG~aia~~la----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 67 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLV----------GQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQ 67 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHhCCCccccccccccccccc
Confidence 45554 56666 559999999998 899999999999988776653 34566777888765543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.24 E-value=1 Score=43.28 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCEEEeCCCh---hHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhhHHHHHh-----cCCCEEEccCCCHHHHHh
Q 003861 532 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLS 600 (791)
Q Consensus 532 ~~viI~G~G~---~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~v~~~~~-----~~~~~v~GD~t~~~~L~~ 600 (791)
+.++|.|.+. +|+.+|+.|. ++|++|++.+.+++..+.+.+ ......+.|.++.+..++
T Consensus 6 K~~lITGass~~GIG~aiA~~l~----------~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDT 72 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHH----------HTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHH
Confidence 3467777654 8899999998 899999999999776544332 246677888888765443
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=80.88 E-value=0.93 Score=40.75 Aligned_cols=96 Identities=16% Similarity=0.247 Sum_probs=58.6
Q ss_pred CCEEEeCCChhHHH-HHHHhhhhccCCCCCCCCCCcEEEE-cCChh--hHHHHHhcCCCEEEccCCCHHHHHhcCCCCCc
Q 003861 532 EPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAF-DLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPK 607 (791)
Q Consensus 532 ~~viI~G~G~~G~~-la~~L~~~~~~~~~~~~~g~~vvvI-D~d~~--~v~~~~~~~~~~v~GD~t~~~~L~~agi~~a~ 607 (791)
=+|.|+|.|.+|+. +.+.|++ ....+++.+ +.|++ ..+.+++.+.++.+++. ++.++....++.|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~---------~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~--d~l~~~~~~~~iD 73 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRN---------AKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV--EGLIKLPEFADID 73 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH---------CSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHH--HHHHHSGGGGGEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhh---------CCcceEEEEEecchhccchhhhhhcCCcccccce--eeeeecccccccC
Confidence 36999999999986 5566652 344455554 76765 34567778888765432 3455555667899
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 003861 608 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 639 (791)
Q Consensus 608 ~viv~~~~d~~n~~~~~~ar~l~p~~~iiara 639 (791)
.++.+|+.... ..-....+....++.+|-..
T Consensus 74 iVf~ATpag~h-~~~~~~~~aa~~G~~VID~s 104 (157)
T d1nvmb1 74 FVFDATSASAH-VQNEALLRQAKPGIRLIDLT 104 (157)
T ss_dssp EEEECSCHHHH-HHHHHHHHHHCTTCEEEECS
T ss_pred EEEEcCCchhH-HHhHHHHHHHHcCCEEEEcc
Confidence 99999886422 22222333443344555433
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.83 E-value=2 Score=38.61 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=47.5
Q ss_pred HhcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcH
Q 003861 599 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 599 ~~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
+.++++.-+.|++.-.....-..+++.+|..+ .++|+-+.+++..+.+++.|||++++++.
T Consensus 22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~ 82 (174)
T d1yb5a2 22 HSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHRE 82 (174)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTS
T ss_pred HHhCCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccccCccccccccc
Confidence 44577766766665444466778888898886 67899888998999999999999998764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.82 E-value=2.4 Score=42.10 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCCEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcC----ChhhHHHHH-------hcCCCEEEccCCCHHHH
Q 003861 531 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL----NPSVVKESR-------KLGFPILYGDASRPAVL 598 (791)
Q Consensus 531 ~~~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~----d~~~v~~~~-------~~~~~~v~GD~t~~~~L 598 (791)
++.++|.|. |-+|+.+++.|. +.|++|.++|. +.+..+..+ ...+..+.+|..|...+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~ 85 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLL----------KLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 85 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHH----------HTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccc
Confidence 446777665 999999999998 89999999985 222232222 24578899999999988
Q ss_pred HhcCCCC
Q 003861 599 LSAGITS 605 (791)
Q Consensus 599 ~~agi~~ 605 (791)
+......
T Consensus 86 ~~~~~~~ 92 (341)
T d1sb8a_ 86 NNACAGV 92 (341)
T ss_dssp HHHHTTC
T ss_pred ccccccc
Confidence 7764443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.72 E-value=2 Score=37.83 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=56.6
Q ss_pred CEEEeCC-ChhHHHHHHHhhhhccCCCCCCCCC--CcEEEEcCChhh--HH----HHHh----c--CCCEEEccCCCHHH
Q 003861 533 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VK----ESRK----L--GFPILYGDASRPAV 597 (791)
Q Consensus 533 ~viI~G~-G~~G~~la~~L~~~~~~~~~~~~~g--~~vvvID~d~~~--v~----~~~~----~--~~~~v~GD~t~~~~ 597 (791)
++.|+|. |.+|+.++..|. ..+ .+++++|.+++. .+ ++.+ . ..++..+-..|.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~----------~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~- 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLA----------KEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR- 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHH----------TCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-
Confidence 3789995 999999999997 455 489999998743 22 2222 1 1222222222333
Q ss_pred HHhcCCCCCcEEEEEeCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhh
Q 003861 598 LLSAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMH 644 (791)
Q Consensus 598 L~~agi~~a~~viv~~~~---------d--~~n~~~----~~~ar~l~p~~~iiara~~~~~ 644 (791)
..++||.+|++.+. | ..|..+ +..+++.+|+ .+++ +.||-+
T Consensus 71 ----~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iiv-VtNPvD 126 (145)
T d1hyea1 71 ----IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFV-ITNPVD 126 (145)
T ss_dssp ----GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEE-CSSSHH
T ss_pred ----HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEE-EcCchH
Confidence 45789988888642 1 344443 4445566665 3444 566654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.70 E-value=0.46 Score=46.31 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=45.3
Q ss_pred CCCCEEEeCCChhHHHHHHHhhhhccCCCCCCCCCCcEEEEcCChhh---HHHHH------hcCCCEEEccCCC--HHHH
Q 003861 530 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKESR------KLGFPILYGDASR--PAVL 598 (791)
Q Consensus 530 ~~~~viI~G~G~~G~~la~~L~~~~~~~~~~~~~g~~vvvID~d~~~---v~~~~------~~~~~~v~GD~t~--~~~L 598 (791)
.+.+|+|+|.|--|-..|..|. +.|++|+|+|.++.. +...+ +.|.+.+.+-..+ .+.+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~----------~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~ 73 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQ----------SFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVS 73 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHH----------HTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHH
Confidence 3556999999999999999998 899999999987653 11111 2345555542222 2566
Q ss_pred HhcCCC
Q 003861 599 LSAGIT 604 (791)
Q Consensus 599 ~~agi~ 604 (791)
++.|++
T Consensus 74 ~~lgl~ 79 (449)
T d2dw4a2 74 KQVNME 79 (449)
T ss_dssp HHHTCC
T ss_pred HHcCCc
Confidence 777775
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=1.1 Score=41.02 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=48.8
Q ss_pred HHHhcCCCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCc
Q 003861 597 VLLSAGITSPK-AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILEN 660 (791)
Q Consensus 597 ~L~~agi~~a~-~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~ 660 (791)
.|++.|....+ .+++.-..--.=..+++.+|.++ .++|+.+.+++..+.+++.|||++++.+
T Consensus 22 ~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~lGad~vi~~~ 84 (177)
T d1o89a2 22 ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLGASRVLPRD 84 (177)
T ss_dssp HHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTEEEEEEGG
T ss_pred HHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHhhccccccccc
Confidence 35666766443 56665555566778899999985 6899999999999999999999999865
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.27 E-value=1.3 Score=39.96 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=49.5
Q ss_pred hcCCCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHCCCCeEEcCcH
Q 003861 600 SAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENA 661 (791)
Q Consensus 600 ~agi~~a~~viv~~~~d~~n~~~~~~ar~l~p~~~iiara~~~~~~~~L~~~Gad~Vi~p~~ 661 (791)
.++++.-|.|++....-..-..+++.+|..+ .++++...+++..+.+++.|||++|+...
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~~vi~~~~ 82 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYRE 82 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEETTT
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCeEEEECCC
Confidence 3567777888777666667778888899876 68999999999999999999999998754
|