Citrus Sinensis ID: 003922
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 786 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SCJ9 | 1067 | Ubiquitin carboxyl-termin | yes | no | 0.951 | 0.701 | 0.566 | 0.0 | |
| A2XDG4 | 1079 | Ubiquitin carboxyl-termin | N/A | no | 0.945 | 0.688 | 0.531 | 0.0 | |
| A3AF13 | 1079 | Ubiquitin carboxyl-termin | yes | no | 0.945 | 0.688 | 0.531 | 0.0 | |
| Q3V0C5 | 1052 | Ubiquitin carboxyl-termin | yes | no | 0.618 | 0.461 | 0.269 | 1e-49 | |
| Q86UV5 | 1035 | Ubiquitin carboxyl-termin | yes | no | 0.492 | 0.373 | 0.291 | 2e-48 | |
| Q76LT8 | 1036 | Ubiquitin carboxyl-termin | yes | no | 0.623 | 0.472 | 0.261 | 2e-48 | |
| Q5ZM45 | 1033 | Ubiquitin carboxyl-termin | yes | no | 0.480 | 0.365 | 0.294 | 2e-46 | |
| Q9UTT1 | 1129 | Ubiquitin carboxyl-termin | yes | no | 0.206 | 0.143 | 0.375 | 1e-22 | |
| Q09879 | 1108 | Probable ubiquitin carbox | no | no | 0.248 | 0.175 | 0.323 | 2e-20 | |
| Q6U7I1 | 1101 | Ubiquitin carboxyl-termin | no | no | 0.180 | 0.128 | 0.379 | 1e-19 |
| >sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=3 | Back alignment and function desciption |
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Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/775 (56%), Positives = 566/775 (73%), Gaps = 27/775 (3%)
Query: 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVL 60
MEDFY LELNVKGLK+LD SL+DYLS+E+L+GDNQYFC SC RVDATR IKLR+LP V+
Sbjct: 238 MEDFYALELNVKGLKSLDASLNDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVI 297
Query: 61 NFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNS 120
FQLKRC+FLPKTT KKKITS F FP L+M RL+E SQ L YDLSAVLIHKG+AVNS
Sbjct: 298 TFQLKRCIFLPKTTAKKKITSSFSFPQVLDMGSRLAESSQNKLTYDLSAVLIHKGSAVNS 357
Query: 121 GHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGA 180
GHY+A IKDE TG WWEFDDEHVS LG P E SSS+ P SE A
Sbjct: 358 GHYVAHIKDEKTGLWWEFDDEHVSELGKRPCNEASSST-------------PQSESNGTA 404
Query: 181 NENHVD--VHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIES 238
+ ++ + SS+ + E F+S+DAYMLMY+LR DK++++ + ++ + E
Sbjct: 405 SSGNITDGIQSGSSDCRSAIKSEVFSSSDAYMLMYSLRCDKQENQEGQKENPIDITKGEV 464
Query: 239 EMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKLRKNRELDCISERKQEVRSLLSEAPV 298
+ + +LP HL + I +N +L+ C+Q+ LRK +EL+ ++ER+QEVR++LSEA V
Sbjct: 465 KQL---KGGYLPKHLSEWINNMNAVFLESCKQYNLRKEKELNALTERRQEVRTILSEAAV 521
Query: 299 PSLEEPFYWISSDWLRQWADKIFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWNKFFF 358
SLEE ++WIS+DWLR WAD P LDNT + C HGKV SK+ MKRIS AW K
Sbjct: 522 QSLEEQYFWISTDWLRLWADTTLPPALDNTPLLCSHGKVHASKVNCMKRISELAWIKLES 581
Query: 359 KYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGTYYVSKS 418
K+NGGP L DYC CL+DGA VV +DSYRDRR +K +A+DVLSGK +G YY+S++
Sbjct: 582 KFNGGPKLGKGDYCRDCLMDGARMVVSSDSYRDRRTFMKSIANDVLSGKCEDGMYYISRA 641
Query: 419 WLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKV 478
WLQQW +RKNLDAP+EAD GPT +I C HG+LMPE+A GAKR++VPE W F++EDA+KV
Sbjct: 642 WLQQWIKRKNLDAPTEADAGPTNAITCNHGELMPEQAPGAKRVVVPENFWSFLFEDALKV 701
Query: 479 KPDDLLGCSTFPLDSEECPECSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSLD 538
+D L C+ FP+DS +C C++ LSEVAC EDS+R K+K+RQNHEKLA GK IPL+
Sbjct: 702 MSEDTLDCTCFPVDSSQCCHCTEVLSEVACFEDSLRTLKVKQRQNHEKLATGKGIPLTPQ 761
Query: 539 CKYYLLPSTWLTKWRNYISPSGKNASSI-EPEILDGVIDSLKCEKHLRLLERPPDLVCKR 597
+Y+LLPS WL +WR YI+ +GKN+SS EPE LDGVI++LKC+KH RLLER P+LVC+R
Sbjct: 762 SRYFLLPSPWLVQWRIYINMTGKNSSSAPEPERLDGVINTLKCKKHTRLLERLPELVCRR 821
Query: 598 GSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSVIVDFSNNAGNELVGSCKEILLS 657
GS +QK +TD LTI+ E DWK+FC+EWGG+ E G+S ++ GN S +++
Sbjct: 822 GSYFQKNPSTDKLTIIPELDWKYFCDEWGGLMENGISAFIE----VGNTDQSSSPDVIDL 877
Query: 658 EEPCGPRDEENNEIESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKE 717
E+ P D N ++++Q+ ++R PEICE+CIGERESCELMQKL+Y + D+ V VRGKE
Sbjct: 878 EKDSSPDD--NMDVDAQQLILRASPEICEECIGERESCELMQKLSYSEGDVFVCFVRGKE 935
Query: 718 APRSILEASESMFEPDRRASKRSRKTR--SFVNLKVSASTSIYQLKMMIWESLGL 770
AP+++LEAS+S FE DRR SKRSR+T + +LKVSA+T++YQLKMMIWE LG+
Sbjct: 936 APKAMLEASDSSFEVDRRTSKRSRRTNYGNLTSLKVSATTTVYQLKMMIWELLGV 990
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|A2XDG4|UBP26_ORYSI Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. indica GN=UBP26 PE=2 SV=1 | Back alignment and function description |
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| >sp|A3AF13|UBP26_ORYSJ Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. japonica GN=UBP26 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3V0C5|UBP48_MOUSE Ubiquitin carboxyl-terminal hydrolase 48 OS=Mus musculus GN=Usp48 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q86UV5|UBP48_HUMAN Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus GN=Usp48 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q09879|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp5 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 786 | ||||||
| 225429898 | 1094 | PREDICTED: ubiquitin carboxyl-terminal h | 0.979 | 0.703 | 0.685 | 0.0 | |
| 255558648 | 1058 | ubiquitin specific protease, putative [R | 0.989 | 0.735 | 0.676 | 0.0 | |
| 296081825 | 1044 | unnamed protein product [Vitis vinifera] | 0.918 | 0.691 | 0.666 | 0.0 | |
| 356554385 | 1083 | PREDICTED: ubiquitin carboxyl-terminal h | 0.965 | 0.700 | 0.638 | 0.0 | |
| 224066813 | 1055 | predicted protein [Populus trichocarpa] | 0.936 | 0.697 | 0.643 | 0.0 | |
| 224082308 | 1084 | predicted protein [Populus trichocarpa] | 0.986 | 0.714 | 0.642 | 0.0 | |
| 449441976 | 1088 | PREDICTED: ubiquitin carboxyl-terminal h | 0.975 | 0.704 | 0.647 | 0.0 | |
| 357466469 | 1083 | Ubiquitin carboxyl-terminal hydrolase [M | 0.970 | 0.704 | 0.626 | 0.0 | |
| 356561901 | 1162 | PREDICTED: ubiquitin carboxyl-terminal h | 0.966 | 0.654 | 0.619 | 0.0 | |
| 356515521 | 1085 | PREDICTED: ubiquitin carboxyl-terminal h | 0.970 | 0.703 | 0.623 | 0.0 |
| >gi|225429898|ref|XP_002283635.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/776 (68%), Positives = 633/776 (81%), Gaps = 6/776 (0%)
Query: 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVL 60
MEDFYELELNVKGLK+LDESL+DYLSVEELHGDNQYFC+SCGTRVDATRSIKLR+LP VL
Sbjct: 242 MEDFYELELNVKGLKSLDESLNDYLSVEELHGDNQYFCESCGTRVDATRSIKLRTLPYVL 301
Query: 61 NFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNS 120
NFQLKRCVFLPKTT KKKITS FCFPGEL+M+ RLSEPS L+LIYDLSAVLIHKGT VNS
Sbjct: 302 NFQLKRCVFLPKTTTKKKITSAFCFPGELDMRERLSEPSDLELIYDLSAVLIHKGTTVNS 361
Query: 121 GHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGA 180
GHYIA IKDENTGQWWEFDDEHVSNLGHHPFGEGSSSS +K V++EP V +E + G
Sbjct: 362 GHYIAHIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSAAKPVQTEPSVHLSSTEPMNGV 421
Query: 181 -NENHVDV-HLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIES 238
N NH+++ L SSE S + ++S DAYMLMYNLRR + + + V N+MEIE
Sbjct: 422 INGNHINIGQLQSSECSIVSGSQTYSSGDAYMLMYNLRRTTKSGEVRQTVSGANHMEIEG 481
Query: 239 EMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKLRKNRELDCISERKQEVRSLLSEAPV 298
++I+ ++D LP+HL ++IKELN SYLD C+Q+K +K RELDCI+ER+QEVRS+LSE PV
Sbjct: 482 DIIYSDNDAALPAHLYEEIKELNASYLDACQQYKSKKERELDCITERRQEVRSVLSEGPV 541
Query: 299 PSLEEPFYWISSDWLRQWADKIFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWNKFFF 358
SLE+P++WIS+DWLR WAD I P LDNT IQCLHGKVP SK+GSMKR+SSKAWN F
Sbjct: 542 LSLEDPYFWISTDWLRLWADNITPPVLDNTPIQCLHGKVPVSKVGSMKRLSSKAWNMLFS 601
Query: 359 KYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGT-YYVSK 417
KY GGPAL+NDDYC+ CL++GA T+V AD+YRDRRK +K LAD V SGK ++G YYVSK
Sbjct: 602 KYGGGPALSNDDYCINCLVEGASTMVSADNYRDRRKVMKELADAVHSGKCLDGNLYYVSK 661
Query: 418 SWLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMK 477
SW QQW RRK +D+P +AD GPT SIRCPHG+LMPE+A GAKRLLVPE LWLF E A
Sbjct: 662 SWFQQWARRKIIDSPCDADAGPTASIRCPHGKLMPEQAPGAKRLLVPENLWLFFCESANT 721
Query: 478 VKPDDLLGCSTFPLDSEECPECSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSL 537
VKPDD LGCS FP D E C CS L+EVA +ED++R KLK+RQNHEK+ALGK LS
Sbjct: 722 VKPDDTLGCSVFPSDVEPCATCSMELTEVASIEDTLREFKLKQRQNHEKIALGKGFALSS 781
Query: 538 DCKYYLLPSTWLTKWRNYISPSGKN-ASSIEPEILDGVIDSLKCEKHLRLLERPPDLVCK 596
CKYYLLPS+WL+ WR+YI+ +GKN +SS++PE+LD VID +KC KH RLLERP +L+CK
Sbjct: 782 HCKYYLLPSSWLSTWRSYINANGKNVSSSVQPEMLDSVIDMMKCGKHSRLLERPLELICK 841
Query: 597 RGSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSVIVDFSNNAGNELVGSCKEILL 656
RG+I+Q+ SATDGLTI+T++DWK+FCEEWG +E G+S ++FSN N L GSC+E+ +
Sbjct: 842 RGTIFQRFSATDGLTIITKDDWKFFCEEWGCTEEMGISAEIEFSNCVANNLAGSCEEMPI 901
Query: 657 SEEPCGPRDEENNEIESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGK 716
EE P DE N EIES++PV++T PE+CE CIGERESCELMQKLNYC++DI V VRGK
Sbjct: 902 IEEHMSPHDEVNEEIESRQPVIKTSPEVCEVCIGERESCELMQKLNYCNEDIRVCFVRGK 961
Query: 717 EAPRSILEASESMFEPDRRASKRSRKTR--SFVNLKVSASTSIYQLKMMIWESLGL 770
EAP+SILEAS ++ EPDRR SKRSRKT + +NLKVS STSIYQLKMMIWES G+
Sbjct: 962 EAPKSILEASGTISEPDRRISKRSRKTNFGNSINLKVSGSTSIYQLKMMIWESFGV 1017
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558648|ref|XP_002520349.1| ubiquitin specific protease, putative [Ricinus communis] gi|223540568|gb|EEF42135.1| ubiquitin specific protease, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|296081825|emb|CBI20830.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356554385|ref|XP_003545527.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224066813|ref|XP_002302228.1| predicted protein [Populus trichocarpa] gi|222843954|gb|EEE81501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224082308|ref|XP_002306642.1| predicted protein [Populus trichocarpa] gi|222856091|gb|EEE93638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449441976|ref|XP_004138758.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357466469|ref|XP_003603519.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355492567|gb|AES73770.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356561901|ref|XP_003549215.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356515521|ref|XP_003526448.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 26-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 786 | ||||||
| TAIR|locus:2114653 | 1067 | UBP26 "ubiquitin-specific prot | 0.951 | 0.701 | 0.552 | 2.9e-229 | |
| MGI|MGI:2158502 | 1052 | Usp48 "ubiquitin specific pept | 0.180 | 0.134 | 0.447 | 3e-47 | |
| RGD|735213 | 1036 | Usp48 "ubiquitin specific pept | 0.180 | 0.137 | 0.447 | 8.1e-46 | |
| UNIPROTKB|Q76LT8 | 1036 | Usp48 "Ubiquitin carboxyl-term | 0.180 | 0.137 | 0.447 | 8.1e-46 | |
| UNIPROTKB|F1M722 | 1076 | Usp48 "Ubiquitin carboxyl-term | 0.180 | 0.131 | 0.447 | 2.2e-45 | |
| UNIPROTKB|B7ZKS7 | 1047 | USP48 "Ubiquitin carboxyl-term | 0.184 | 0.138 | 0.438 | 3.1e-45 | |
| UNIPROTKB|Q86UV5 | 1035 | USP48 "Ubiquitin carboxyl-term | 0.184 | 0.140 | 0.438 | 2.7e-44 | |
| UNIPROTKB|F1PG27 | 1036 | USP48 "Uncharacterized protein | 0.184 | 0.139 | 0.438 | 2.7e-44 | |
| ZFIN|ZDB-GENE-050522-197 | 1055 | usp48 "ubiquitin specific pept | 0.180 | 0.134 | 0.475 | 4.7e-44 | |
| UNIPROTKB|E1BF92 | 1038 | USP48 "Uncharacterized protein | 0.184 | 0.139 | 0.438 | 3e-43 |
| TAIR|locus:2114653 UBP26 "ubiquitin-specific protease 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2212 (783.7 bits), Expect = 2.9e-229, P = 2.9e-229
Identities = 428/775 (55%), Positives = 552/775 (71%)
Query: 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVL 60
MEDFY LELNVKGLK+LD SL+DYLS+E+L+GDNQYFC SC RVDATR IKLR+LP V+
Sbjct: 238 MEDFYALELNVKGLKSLDASLNDYLSLEQLNGDNQYFCGSCNARVDATRCIKLRTLPPVI 297
Query: 61 NFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNS 120
FQLKRC+FLPKTT KKKITS F FP L+M RL+E SQ L YDLSAVLIHKG+AVNS
Sbjct: 298 TFQLKRCIFLPKTTAKKKITSSFSFPQVLDMGSRLAESSQNKLTYDLSAVLIHKGSAVNS 357
Query: 121 GHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEXXXXXXXKVVRSEPVVCQPVSERVEGA 180
GHY+A IKDE TG WWEFDDEHVS LG P E P SE A
Sbjct: 358 GHYVAHIKDEKTGLWWEFDDEHVSELGKRPCNEASSST-------------PQSESNGTA 404
Query: 181 NENHVD--VHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIES 238
+ ++ + SS+ + E F+S+DAYMLMY+LR DK++++ + ++ + E
Sbjct: 405 SSGNITDGIQSGSSDCRSAIKSEVFSSSDAYMLMYSLRCDKQENQEGQKENPIDITKGEV 464
Query: 239 EMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKLRKNRELDCISERKQEVRSLLSEAPV 298
+ + +LP HL + I +N +L+ C+Q+ LRK +EL+ ++ER+QEVR++LSEA V
Sbjct: 465 KQLKGG---YLPKHLSEWINNMNAVFLESCKQYNLRKEKELNALTERRQEVRTILSEAAV 521
Query: 299 PSLEEPFYWISSDWLRQWADKIFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWNKFFF 358
SLEE ++WIS+DWLR WAD P LDNT + C HGKV SK+ MKRIS AW K
Sbjct: 522 QSLEEQYFWISTDWLRLWADTTLPPALDNTPLLCSHGKVHASKVNCMKRISELAWIKLES 581
Query: 359 KYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGTYYVSKS 418
K+NGGP L DYC CL+DGA VV +DSYRDRR +K +A+DVLSGK +G YY+S++
Sbjct: 582 KFNGGPKLGKGDYCRDCLMDGARMVVSSDSYRDRRTFMKSIANDVLSGKCEDGMYYISRA 641
Query: 419 WLQQWTRRKNLDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKV 478
WLQQW +RKNLDAP+EAD GPT +I C HG+LMPE+A GAKR++VPE W F++EDA+KV
Sbjct: 642 WLQQWIKRKNLDAPTEADAGPTNAITCNHGELMPEQAPGAKRVVVPENFWSFLFEDALKV 701
Query: 479 KPDDLLGCSTFPLDSEECPECSDALSEVACLEDSIRARKLKERQNHEKLALGKSIPLSLD 538
+D L C+ FP+DS +C C++ LSEVAC EDS+R K+K+RQNHEKLA GK IPL+
Sbjct: 702 MSEDTLDCTCFPVDSSQCCHCTEVLSEVACFEDSLRTLKVKQRQNHEKLATGKGIPLTPQ 761
Query: 539 CKYYLLPSTWLTKWRNYISPSGKNASSI-EPEILDGVIDSLKCEKHLRLLERPPDLVCKR 597
+Y+LLPS WL +WR YI+ +GKN+SS EPE LDGVI++LKC+KH RLLER P+LVC+R
Sbjct: 762 SRYFLLPSPWLVQWRIYINMTGKNSSSAPEPERLDGVINTLKCKKHTRLLERLPELVCRR 821
Query: 598 GSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSVIVDFSNNAGNELVGSCKEILLS 657
GS +QK +TD LTI+ E DWK+FC+EWGG+ E G+S ++ GN S +++
Sbjct: 822 GSYFQKNPSTDKLTIIPELDWKYFCDEWGGLMENGISAFIE----VGNTDQSSSPDVIDL 877
Query: 658 EEPCGPRDEENNEIESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKE 717
E+ P D N ++++Q+ ++R PEICE+CIGERESCELMQKL+Y + D+ V VRGKE
Sbjct: 878 EKDSSPDD--NMDVDAQQLILRASPEICEECIGERESCELMQKLSYSEGDVFVCFVRGKE 935
Query: 718 APRSILEASESMFEPDXXXXXXXXXXXX--FVNLKVSASTSIYQLKMMIWESLGL 770
AP+++LEAS+S FE D +LKVSA+T++YQLKMMIWE LG+
Sbjct: 936 APKAMLEASDSSFEVDRRTSKRSRRTNYGNLTSLKVSATTTVYQLKMMIWELLGV 990
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| MGI|MGI:2158502 Usp48 "ubiquitin specific peptidase 48" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|735213 Usp48 "ubiquitin specific peptidase 48" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q76LT8 Usp48 "Ubiquitin carboxyl-terminal hydrolase 48" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M722 Usp48 "Ubiquitin carboxyl-terminal hydrolase 48" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7ZKS7 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q86UV5 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PG27 USP48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050522-197 usp48 "ubiquitin specific peptidase 48" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BF92 USP48 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SCJ9 | UBP26_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5664 | 0.9516 | 0.7010 | yes | no |
| A3AF13 | UBP26_ORYSJ | 3, ., 4, ., 1, 9, ., 1, 2 | 0.5312 | 0.9452 | 0.6886 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 786 | |||
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 1e-68 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 4e-42 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-35 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 2e-32 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-29 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-27 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 3e-27 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 4e-25 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 3e-22 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-18 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 7e-16 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-15 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 2e-14 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 4e-14 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-10 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 4e-10 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 5e-09 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 6e-09 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-08 | |
| smart00695 | 88 | smart00695, DUSP, Domain in ubiquitin-specific pro | 4e-08 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 6e-07 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 6e-05 | |
| cd02666 | 343 | cd02666, Peptidase_C19J, A subfamily of Peptidase | 3e-04 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 0.001 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 0.002 |
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 1e-68
Identities = 89/213 (41%), Positives = 119/213 (55%), Gaps = 31/213 (14%)
Query: 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVL 60
FYELEL +KG KTL+E +D++L E+L GDNQYFC+SC ++ DATR I+L +LP L
Sbjct: 142 PSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTL 201
Query: 61 NFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNS 120
NFQL R VF KT KKK+ + FP L+M L+E + +Y+LS VLIH+G + S
Sbjct: 202 NFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYS 261
Query: 121 GHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGA 180
GHYIA IKDE TG+W++F+DE V + P G+S +K +SE
Sbjct: 262 GHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSE-------------- 307
Query: 181 NENHVDVHLPSSEYYNGSNVERFTSNDAYMLMY 213
+S AYML+Y
Sbjct: 308 -----------------IKKGTHSSRTAYMLVY 323
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324 |
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|197831 smart00695, DUSP, Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 786 | |||
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.97 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 99.97 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 99.97 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 99.96 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 99.95 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.94 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.94 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.94 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 99.94 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.93 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 99.92 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.91 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.91 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 99.9 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.89 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.89 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 99.87 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 99.83 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 99.78 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 99.76 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.65 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.63 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.52 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.46 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.2 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.02 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.0 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 98.94 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 98.93 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 98.64 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.58 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 95.94 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 88.55 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 87.42 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 87.18 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 86.88 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 86.31 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 83.7 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 81.75 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 81.56 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 81.34 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 80.73 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 80.59 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 80.44 |
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=332.37 Aligned_cols=183 Identities=48% Similarity=0.805 Sum_probs=160.3
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|+.|+|+|++..+|++||+.|+.+|.|+|+|+|.|++|+.+++|.|+..|.+||+||+|||+||.|+..++...|++
T Consensus 142 ~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~ 221 (324)
T cd02668 142 PSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLN 221 (324)
T ss_pred ccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGS 160 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~~ 160 (786)
+.|.||..|||.+|+.........|+|+|||+|.|.++++|||+||+|+..+++||+|||+.|++++.+.+.+..++.+.
T Consensus 222 ~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~ 301 (324)
T cd02668 222 ASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPA 301 (324)
T ss_pred cEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccc
Confidence 99999999999999876554578999999999999878999999999987679999999999999998877665443321
Q ss_pred ccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEE
Q 003922 161 KVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYN 214 (786)
Q Consensus 161 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~ 214 (786)
++ .......+.+.+.+||||||+
T Consensus 302 ~~-------------------------------~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 302 KP-------------------------------RKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cc-------------------------------cccccCCCccccCceEEEEeC
Confidence 11 011123447789999999995
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. |
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 786 | ||||
| 2f1z_A | 522 | Crystal Structure Of Hausp Length = 522 | 1e-20 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 2e-20 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 2e-20 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 7e-16 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 8e-16 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 8e-16 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-10 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 7e-09 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 8e-09 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 1e-04 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 1e-04 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 1e-04 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 1e-04 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 1e-04 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 1e-04 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 1e-04 | ||
| 1vjv_A | 415 | Crystal Structure Of Ubiquitin Carboxyl-terminal Hy | 2e-04 | ||
| 2ayn_A | 404 | Structure Of Usp14, A Proteasome-Associated Deubiqu | 2e-04 |
| >pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 | Back alignment and structure |
|
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 | Back alignment and structure |
| >pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 2e-50
Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 64/278 (23%)
Query: 2 EDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLN 61
ED+Y+++L++KG K + ES DY++VE+L GDN+Y G +A + +K +LP VL+
Sbjct: 138 EDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLH 196
Query: 62 FQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLD-LIYDLSAVLIHKGTAVNS 120
QL R ++ P+T KI F FP +L + L + D Y L AVL+H G +
Sbjct: 197 LQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HG 255
Query: 121 GHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGA 180
GHY+ + + G+W +FDD+ VS + E G
Sbjct: 256 GHYVVYLNPKGDGKWCKFDDDVVS----------------------RCTKEEAIEHNYGG 293
Query: 181 NENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESEM 240
+++ ++ +AYML+Y +R K E+
Sbjct: 294 HDD---------------DLSVRHCTNAYMLVY-IRESKLS-----------------EV 320
Query: 241 IFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKLRKNRE 278
+ D +P L + ++E R + + RK R+
Sbjct: 321 LQAVTDHDIPQQLVERLQEEKR------IEAQKRKERQ 352
|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 786 | |||
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 99.98 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 99.97 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 99.97 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 99.97 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 99.96 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 99.08 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.04 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 98.99 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 98.92 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 98.91 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 98.81 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 98.76 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 91.26 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 89.23 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 87.85 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 87.01 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 86.23 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 85.99 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 85.81 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 85.57 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 85.55 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 85.28 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 85.18 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 85.04 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 84.9 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 84.6 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 84.44 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 83.89 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 83.82 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 83.73 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 83.24 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 82.96 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 82.96 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 82.6 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 82.48 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 82.19 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 82.08 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 81.54 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 81.0 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 81.0 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 80.95 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 80.94 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 80.73 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 80.18 |
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=329.03 Aligned_cols=208 Identities=32% Similarity=0.526 Sum_probs=161.7
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|+|+|++..+|.+||..|+.+|.|+|+|+|.|+.|+ ++.|.|++.|.+||+||+|||+||.|+..++...|++
T Consensus 137 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~ 215 (353)
T 1nb8_A 137 REDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 215 (353)
T ss_dssp EEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCC
T ss_pred eeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecC
Confidence 378999999999999999999999999999999999999997 6889999999999999999999999998777889999
Q ss_pred ceeecccccccccccCCCC-CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSG 159 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~ 159 (786)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..++.||.|||+.|++++.+.+.....|+.
T Consensus 216 ~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~ 294 (353)
T 1nb8_A 216 DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294 (353)
T ss_dssp CCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC
T ss_pred cEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCC
Confidence 9999999999999987643 23689999999999999 599999999997678999999999999998544332222110
Q ss_pred CccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhhhhh
Q 003922 160 SKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESE 239 (786)
Q Consensus 160 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~ 239 (786)
.. ......+.+||||||+|.+.... .+
T Consensus 295 ~~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~-----~~----------- 321 (353)
T 1nb8_A 295 DD-------------------------------------DLSVRHCTNAYMLVYIRESKLSE-----VL----------- 321 (353)
T ss_dssp --------------------------------------------CCEEEEEEEEEETTTHHH-----HT-----------
T ss_pred cc-------------------------------------ccccCcCCeEEEEEEEECchhhh-----hh-----------
Confidence 00 00011357899999999875321 11
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHHH
Q 003922 240 MIFFNDDIFLPSHLGKDIKELNRSYL 265 (786)
Q Consensus 240 ~~~~~~~~~lP~~l~~~V~~~N~~f~ 265 (786)
..-....+|+++.+.+.++|..-.
T Consensus 322 --~~~~~~~~p~~~~~~~~~~~~~~~ 345 (353)
T 1nb8_A 322 --QAVTDHDIPQQLVERLQEEKRIEA 345 (353)
T ss_dssp --CCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred --cccCccccCHHHHHHHHHHHHHHH
Confidence 111234689999999998887654
|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 786 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 4e-24 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 6e-22 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-15 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 8e-14 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 4e-13 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-05 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 1e-06 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 4e-24
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 16 TLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75
TL + L + E+L +N+++C C R D+ + I++ LP VL LKR + +
Sbjct: 202 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 261
Query: 76 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQW 135
K TS L++ + + P Y+L +V H G + GHY A K+ +W
Sbjct: 262 KL-QTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGL-DGGHYTAYCKNAARQRW 319
Query: 136 WEFDDEHVS 144
++FDD VS
Sbjct: 320 FKFDDHEVS 328
|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 786 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 99.94 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 99.93 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 99.92 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 99.88 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.22 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.04 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 91.19 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 90.69 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 90.04 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 89.78 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 89.06 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 88.87 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 88.16 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 86.83 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 86.24 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 86.08 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 86.06 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 85.78 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 85.15 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 85.11 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 85.05 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 84.13 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 83.82 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 83.17 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 81.76 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 81.69 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 81.22 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 81.05 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 80.6 | |
| d1wf9a1 | 94 | NPL4-like protein 1 {Thale cress (Arabidopsis thal | 80.38 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-34 Score=310.11 Aligned_cols=207 Identities=31% Similarity=0.516 Sum_probs=169.6
Q ss_pred CcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccc
Q 003922 2 EDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITS 81 (786)
Q Consensus 2 E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~ 81 (786)
|+|+.|+|+++...++.++|..++.+|.|+|++++.|..| ...++.|+..|.++|++|+|||+||.|+..++...|+++
T Consensus 138 e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~ 216 (347)
T d1nbfa_ 138 EDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIND 216 (347)
T ss_dssp EEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCC
T ss_pred ccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCc
Confidence 7899999999999999999999999999999998877766 468899999999999999999999999999899999999
Q ss_pred eeecccccccccccCCCCCC-CceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCCC
Q 003922 82 PFCFPGELNMQRRLSEPSQL-DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGS 160 (786)
Q Consensus 82 ~V~fP~~Ldl~~~~~~~~~~-~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~~ 160 (786)
.|.||..|||++|+...... ...|+|+|||+|.|++ ++|||+||+|+..+++||.|||+.|++++.+.+.....|+..
T Consensus 217 ~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~ 295 (347)
T d1nbfa_ 217 RFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHD 295 (347)
T ss_dssp CCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEET-TEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCC
T ss_pred eEeeeeeeccccccccccccCccceeeEEEEEecCCC-CCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCc
Confidence 99999999999998765433 6799999999999985 999999999987788999999999999987655443332210
Q ss_pred ccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhhhhhh
Q 003922 161 KVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESEM 240 (786)
Q Consensus 161 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (786)
. ......+.+||||||+|.+.....
T Consensus 296 ~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~~------------------ 320 (347)
T d1nbfa_ 296 D-------------------------------------DLSVRHCTNAYMLVYIRESKLSEV------------------ 320 (347)
T ss_dssp S-------------------------------------CCSTTTTEEEEEEEEEEGGGHHHH------------------
T ss_pred c-------------------------------------ccccCCCCCEEEEEEEecCchHHh------------------
Confidence 0 011234678999999998743210
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHHH
Q 003922 241 IFFNDDIFLPSHLGKDIKELNRSYL 265 (786)
Q Consensus 241 ~~~~~~~~lP~~l~~~V~~~N~~f~ 265 (786)
........+|++|.+.|+++|..+.
T Consensus 321 ~~~~~~~~~~~~l~~~~~e~~~~~~ 345 (347)
T d1nbfa_ 321 LQAVTDHDIPQQLVERLQEEKRIEA 345 (347)
T ss_dssp TCCCCGGGSCHHHHHHHHTHHHHTT
T ss_pred hCCCCccccCHHHHHHHHHHHHHHh
Confidence 0111233589999999999987653
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|