Citrus Sinensis ID: 003927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780------
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
ccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEcccEEEEEcHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccEEHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mtmnerktIDLEQGWEFMQKGITKLKNIleglpepqfssedYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNmctqkpphdysqQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIarrslpplnevgltCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIgmgqmdyyENDFETAMLKDTAAYYsrkasnwiledscpdyMLKAEECLKREKDRVshylhsssepklLEKVQHELLSVYANQLLEkehsgchallrddkvEDLSRMFRLFskiprgldpvsnIFKQHVTAEGTALVKLAEDAAsnkkaekrdvvGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCnkgvagssSAELLATFCDNILkkggseklsDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdksanddhERSILTKLKqqcggqftskmegMVTDLTLARENQTSFEEYLsnnpnanpgidLTVTVLTtgfwpsyksfdlnlpaEMVKCVEVFREFYQTktkhrkltwIYSLGTcnllgkfesrtTELIVTTYQASALLLFnssdrlsysEIMTQLNLSDDDVVRLLHSLSCAKYkilnkepntktisptdhfefnskftdkmrrikiplppvdekkkvIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRdylerdksnpnmfryla
mtmnerktidleqgWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCtqkpphdySQQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLidqeregeqidRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFskiprgldpvSNIFKQHVTAEGTALVKLAEDAasnkkaekrdvvglqeqVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLfdksanddhersiltklkqqcggqftskMEGMVTDLTLARENQTSFEEYLsnnpnanpGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQtktkhrkltwiySLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAkykilnkepntktisptdhfefnskftdkmrrikiplppvdekkkviedvdkdrryAIDASIVRIMKSRKVLGHQQLVLECVEQlgrmfkpdfkaIKKRIEDlitrdylerdksnpnmfryla
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNfflaflwycfffffSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPvdekkkviedvdkdRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
**********LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR*******Y********LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA************DVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGG***L*DEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDK*********ILTKLKQQCGGQF******MVTDLTL*****************ANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE**********HFEFNSKFTDKMRRIKIPL*******KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYL**************
******K****EQGWEFMQKGITKLKNIL***********DYMMLYTYLFQPHLVSAFVNILLLVIHNFFLA*************SVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLP*IR*KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAE************VVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKG*******EAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEE**********GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE*****ISPTDHFEFNSKFTDKMRRIK*******************RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
*****RKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK*****VVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLxxxxxxxxxxxxxxxxxxxxxVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query786 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.937 0.998 0.790 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.932 0.987 0.625 0.0
P0CH31721 Putative cullin-like prot no no 0.902 0.983 0.624 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.866 0.885 0.356 1e-127
Q13619759 Cullin-4A OS=Homo sapiens yes no 0.853 0.884 0.350 1e-117
Q9XIE9374 Putative cullin-like prot no no 0.445 0.935 0.523 1e-117
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.861 0.924 0.351 1e-116
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.861 0.924 0.345 1e-114
A2A432970 Cullin-4B OS=Mus musculus yes no 0.847 0.686 0.350 1e-111
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.853 0.884 0.349 1e-111
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/782 (79%), Positives = 687/782 (87%), Gaps = 45/782 (5%)

Query: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLL 64
           ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYT                 
Sbjct: 2   ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYT----------------- 44

Query: 65  VIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVL 124
                                    TIYNMCTQKPPHDYSQQLYDKYRE+FEEYI+STVL
Sbjct: 45  -------------------------TIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVL 79

Query: 125 PSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDL 184
           P++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIARRSLPPLNEVGLTCFRDL
Sbjct: 80  PALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDL 139

Query: 185 VYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKD 244
           VY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIGMGQM+ YE DFE+ ML+D
Sbjct: 140 VYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQD 199

Query: 245 TAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVY 304
           T++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHSSSEPKL+EKVQHELL V+
Sbjct: 200 TSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELLVVF 259

Query: 305 ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 364
           A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+NIFKQHVTAEG ALV+ A
Sbjct: 260 ASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQA 319

Query: 365 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 424
           ED A+N+ A   +   +QEQV +RKVIELHDKY+ YV +CFQNHTLFHK+LKEAFE+FCN
Sbjct: 320 EDTATNQVA---NTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCN 376

Query: 425 KGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKK 484
           K VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVKLLAYISDKDLFAEFYRKK
Sbjct: 377 KTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKK 436

Query: 485 LARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNP 544
           LARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +NP
Sbjct: 437 LARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNP 496

Query: 545 NANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGT 604
            ANPGIDLTVTVLTTGFWPSYKSFD+NLP+EM+KCVEVF+ FY+TKTKHRKLTWIYSLGT
Sbjct: 497 AANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGT 556

Query: 605 CNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK 664
           C++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QLNLS +D+VRLLHSLSCAK
Sbjct: 557 CHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAK 616

Query: 665 YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDAS 724
           YKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPPVDE+KKV+EDVDKDRRYAIDA+
Sbjct: 617 YKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAA 676

Query: 725 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 784
           IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDLITRDYLERDK NPNMFRY
Sbjct: 677 IVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 736

Query: 785 LA 786
           LA
Sbjct: 737 LA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
255551707744 Cullin-1, putative [Ricinus communis] gi 0.946 1.0 0.917 0.0
224123204744 predicted protein [Populus trichocarpa] 0.946 1.0 0.912 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 0.946 1.0 0.905 0.0
224107343742 predicted protein [Populus trichocarpa] 0.944 1.0 0.906 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 0.946 1.0 0.904 0.0
386688470744 cullin 1-like protein B [Prunus avium] 0.946 1.0 0.893 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.946 1.0 0.889 0.0
356556122744 PREDICTED: cullin-1-like [Glycine max] 0.946 1.0 0.888 0.0
356529771744 PREDICTED: cullin-1-like [Glycine max] 0.946 1.0 0.886 0.0
356521879744 PREDICTED: cullin-1-like isoform 1 [Glyc 0.946 1.0 0.885 0.0
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1484 bits (3843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/786 (91%), Positives = 736/786 (93%), Gaps = 42/786 (5%)

Query: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVN 60
           MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYT             
Sbjct: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYT------------- 47

Query: 61  ILLLVIHNFFLAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYIS 120
                                        TIYNMCTQKPPHDYSQQLYDKYRESFEEYI+
Sbjct: 48  -----------------------------TIYNMCTQKPPHDYSQQLYDKYRESFEEYIT 78

Query: 121 STVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTC 180
           STVLPS+REKHDEFMLRELVKRW+NHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTC
Sbjct: 79  STVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTC 138

Query: 181 FRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETA 240
           FRDLVY ELN KVRDAVI+LIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFE A
Sbjct: 139 FRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFEVA 198

Query: 241 MLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHEL 300
           MLKDT +YYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQ+EL
Sbjct: 199 MLKDTGSYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQYEL 258

Query: 301 LSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTAL 360
           LSV+ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS+IFKQHVTAEGTAL
Sbjct: 259 LSVFANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGTAL 318

Query: 361 VKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFE 420
           VKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHK+LKEAFE
Sbjct: 319 VKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFE 378

Query: 421 VFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEF 480
           VFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEE LEKVVKLLAYISDKDLFAEF
Sbjct: 379 VFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEF 438

Query: 481 YRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYL 540
           YRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYL
Sbjct: 439 YRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYL 498

Query: 541 SNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIY 600
           SNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIY
Sbjct: 499 SNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIY 558

Query: 601 SLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 660
           SLGTCNL+GKFE +T ELIVTTYQASALLLFNSSDRLSYSEIMTQLNL+DDDVVRLLHSL
Sbjct: 559 SLGTCNLIGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEIMTQLNLTDDDVVRLLHSL 618

Query: 661 SCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYA 720
           SCAKYKILNKEPNTK+ISPTD+FEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYA
Sbjct: 619 SCAKYKILNKEPNTKSISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYA 678

Query: 721 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPN 780
           IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK NPN
Sbjct: 679 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPN 738

Query: 781 MFRYLA 786
           +FRYLA
Sbjct: 739 LFRYLA 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356529771|ref|XP_003533461.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356521879|ref|XP_003529578.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.886 0.944 0.818 0.0
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.893 0.946 0.651 3.7e-262
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.511 0.557 0.673 7.8e-257
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.501 0.538 0.384 1.8e-114
UNIPROTKB|F1RN43761 CUL4A "Uncharacterized protein 0.506 0.522 0.409 2.4e-108
TAIR|locus:2025881374 AT1G59790 [Arabidopsis thalian 0.360 0.756 0.620 8.2e-106
FB|FBgn0261268934 Cul-3 "Cullin-3" [Drosophila m 0.648 0.546 0.302 1.4e-101
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 0.482 0.478 0.407 1.1e-97
UNIPROTKB|F1MYD0776 CUL1 "Uncharacterized protein" 0.839 0.850 0.317 7.9e-93
UNIPROTKB|E2R1V2776 CUL1 "Uncharacterized protein" 0.839 0.850 0.317 7.9e-93
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3032 (1072.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 573/700 (81%), Positives = 637/700 (91%)

Query:    87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNH 146
             +Y TIYNMCTQKPPHDYSQQLYDKYRE+FEEYI+STVLP++REKHDEFMLREL KRWSNH
Sbjct:    42 LYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNH 101

Query:   147 KVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQERE 206
             KVMVRWLSRFF+YLDRYFIARRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+ERE
Sbjct:   102 KVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKERE 161

Query:   207 GEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYM 266
             GEQIDRALLKNVLDI+VEIGMGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYM
Sbjct:   162 GEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYM 221

Query:   267 LKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVE 326
             LK+EECLK+E++RV+HYLHSSSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+
Sbjct:   222 LKSEECLKKERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVD 281

Query:   327 DLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVF 386
             DLSRM+RL+ KI RGL+PV+NIFKQHVTAEG ALV+ AED A+N+ A    V   QEQV 
Sbjct:   282 DLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASV---QEQVL 338

Query:   387 VRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKK 446
             +RKVIELHDKY+ YV +CFQNHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKK
Sbjct:   339 IRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKK 398

Query:   447 GGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTK 506
             GGSEKLSDEAIE+ LEKVVKLLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTK
Sbjct:   399 GGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTK 458

Query:   507 LKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK 566
             LKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYK
Sbjct:   459 LKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYK 518

Query:   567 SFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQAS 626
             SFD+NLP+EM+KCVEVF+ FY+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+
Sbjct:   519 SFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAA 578

Query:   627 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFN 686
              LLLFN++D+LSY+EI+ QLNLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFN
Sbjct:   579 VLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFN 638

Query:   687 SKFTDKMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVE 746
             SKFTD+MRRIKIPLPP              RRYAIDA+IVRIMKSRKVLGHQQLV ECVE
Sbjct:   639 SKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVE 698

Query:   747 QLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
             QL RMFKPD KAIKKR+EDLITRDYLERDK NPNMFRYLA
Sbjct:   699 QLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN43 CUL4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0261268 Cul-3 "Cullin-3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYD0 CUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1V2 CUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13619CUL4A_HUMANNo assigned EC number0.35060.85360.8840yesno
Q94AH6CUL1_ARATHNo assigned EC number0.79020.93760.9986yesno
Q17389CUL1_CAEELNo assigned EC number0.31140.82310.8294yesno
Q54NZ5CUL3_DICDINo assigned EC number0.35650.86640.8855yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-116
smart00182143 smart00182, CULLIN, Cullin 6e-57
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 3e-28
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 2e-25
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.004
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  587 bits (1514), Expect = 0.0
 Identities = 253/605 (41%), Positives = 379/605 (62%), Gaps = 26/605 (4%)

Query: 87  VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNH 146
           +Y  +YN      PH   ++LY++ +E  EEY+++ +L SI E  DE +L+   K W+  
Sbjct: 24  LYTAVYNYV----PHKLGEKLYNRLKEYLEEYVAA-LLKSILENDDEVLLKTYYKEWNKF 78

Query: 147 KVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQERE 206
              ++ L+  F YL+RY++ R++L  + E+GL  +R+ ++  +  K+ DA++ LI++ER 
Sbjct: 79  STSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIWRESLFDPIKDKLIDALLRLIEKERL 138

Query: 207 GEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYM 266
           GE IDR+L+KNVLD+FVE+G+ +++ Y+ DFE   L+ T+ +Y +++S ++ E+S  +YM
Sbjct: 139 GEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYM 198

Query: 267 LKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVE 326
            K EE L+ E++RV  YLHSS+E KL+E  +  L+  +   L    HS    LL ++K+E
Sbjct: 199 KKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLIEKHLEFL----HSEFQRLLDNEKIE 254

Query: 327 DLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVF 386
           DL RM+RL S++P GL+P+   F++H+  EG A V                 V    + +
Sbjct: 255 DLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAVSDLA-------------VETDPKDY 301

Query: 387 VRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKK 446
           V+ ++ELHDKY + VN+ F N  LF  +L +AFE F N     S SAELLA +CD++LKK
Sbjct: 302 VQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINSNS--SKSAELLAKYCDSLLKK 359

Query: 447 GGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTK 506
              + L++E +EE L+K++ L  YI DKD+F +FYRK LA+RLL   SA+DD E+ ++ K
Sbjct: 360 -SLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEK 418

Query: 507 LKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANP-GIDLTVTVLTTGFWPSY 565
           LKQ+CG QFTSK+E M  D++L++E   SF+ +L NN +    GIDL+V VL+TGFWP+ 
Sbjct: 419 LKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGFWPTL 478

Query: 566 KSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQA 625
            +   +LP E+ K +E F EFY  K   RKLTW++SLG   L  +F  +T EL V+TYQ 
Sbjct: 479 PTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVSTYQM 538

Query: 626 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEF 685
           + LLLFN  + L+  E+     LSDD + R L SL  AK  +L K P  +  SP   F  
Sbjct: 539 AVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLLLTKIPKGEEFSPNTVFSL 598

Query: 686 NSKFT 690
           NS FT
Sbjct: 599 NSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 786
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.94
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.79
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 95.89
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 93.53
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 92.27
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 91.54
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 91.4
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 89.96
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 88.95
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 85.92
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 85.9
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 84.16
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 83.3
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 83.12
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 81.92
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 81.8
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-131  Score=1136.15  Aligned_cols=719  Identities=65%  Similarity=1.078  Sum_probs=672.5

Q ss_pred             CCCcCCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 003927            5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSK   84 (786)
Q Consensus         5 ~~~~~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (786)
                      .+++++++.+|..+++|++++.+++++-+      +.||++|++                                    
T Consensus         4 ~~~~~~~~~~w~~~~~~~~~l~~~~~~~s------~~~~~~~~~------------------------------------   41 (725)
T KOG2166|consen    4 APKEIDLEVGWSYIETGITKLKRIIEGLS------EPAFEQYQF------------------------------------   41 (725)
T ss_pred             cccccchhccHHHHHHHHHHHHHHHHhhc------cccccHHHH------------------------------------
Confidence            35789999999999999999999776322      556777773                                    


Q ss_pred             chhhhHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 003927           85 KSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYF  164 (786)
Q Consensus        85 ~~lY~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~y  164 (786)
                      ..+|+++|++|+++.+.+.+++||+++++++.+|+.+.+.+......++.+|+.+++.|.+|+.++++++++|+||||+|
T Consensus        42 ~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~  121 (725)
T KOG2166|consen   42 MYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYY  121 (725)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            36777999999999655556999999999999999998888888888999999999999999999999999999999999


Q ss_pred             hhcC-CCCcHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccHHhhHHHH
Q 003927          165 IARR-SLPPLNEVG-LTCFRDLVYT-ELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAM  241 (786)
Q Consensus       165 v~~~-~~~~i~~l~-l~~fr~~vf~-~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~~~FE~~~  241 (786)
                      |+++ +..++++++ +.+|+..+.. ++.+++++++|.+|..+|.|+.||+.+|++++++++.+|.+.+++|..+||++|
T Consensus       122 v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~f  201 (725)
T KOG2166|consen  122 VAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHKEREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKF  201 (725)
T ss_pred             HHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHH
Confidence            9876 666676666 8888877776 699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 003927          242 LKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLR  321 (786)
Q Consensus       242 L~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~  321 (786)
                      ++.|+.||..++..|+..+++++||.+|+.++.+|..|+..|++..+.+++.+.++..++..|.+.+++.+++||..|+.
T Consensus       202 l~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~yl~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~  281 (725)
T KOG2166|consen  202 LQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHYLHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLN  281 (725)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHh
Confidence            99999999999999999889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 003927          322 DDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYV  401 (786)
Q Consensus       322 ~~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~lv  401 (786)
                      +++.+||.+||+|++|++.|+++++..|+.|++.+|..++.+.....           ..+|+.+|+.+++++++|..++
T Consensus       282 ~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r~~~~~-----------~~~~~~~v~~~l~~~~~~~~~~  350 (725)
T KOG2166|consen  282 DDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVARPAETA-----------ATNPVEYVQGLLELHDKYKVLV  350 (725)
T ss_pred             ccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhhhhhhc-----------ccchHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988887765432           1579999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHhhhhccCChhHHHHHH
Q 003927          402 NDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFY  481 (786)
Q Consensus       402 ~~~F~~~~~f~~~l~~af~~~iN~~~~~~~~~e~La~y~D~~lkk~~~~~~~~~e~e~~l~~i~~lf~~l~~KD~F~~~Y  481 (786)
                      ..||++|..|.++++.||..|+|.+..+  .||+||+|||.+||++ ..+.++++++..|++++.+|+|++|||+|+++|
T Consensus       351 ~~~f~~d~~f~~~ld~a~~~fin~n~~~--~~E~la~y~D~~lkk~-~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Y  427 (725)
T KOG2166|consen  351 KECFANDTLFKKALDAAFEEFINKNVAT--SAELLATYCDDILKKG-SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFY  427 (725)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHcccCCC--cHHHHHHHhHHHhccc-ccCCchhHHHhHhhcceeeeeeccHHHHHHHHH
Confidence            9999999999999999999999999632  3799999999999995 467889999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCC
Q 003927          482 RKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGF  561 (786)
Q Consensus       482 ~~~LakRLL~~~s~s~d~E~~~I~~Lk~~~G~~~t~kl~~M~~D~~~S~~l~~~F~~~~~~~~~~~~~~~f~v~VLt~~~  561 (786)
                      +++||||||+++|.|+|+|++||++|+++||.+||+||++||+|+..|++++..|+++  .+.....+++|.|.|||+|+
T Consensus       428 kk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf~D~~~s~~l~~~F~~~--~~~~~~~~~df~v~VLt~g~  505 (725)
T KOG2166|consen  428 KKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMFTDLTLSRELQTAFADY--ANYSANLGIDFTVTVLTTGF  505 (725)
T ss_pred             HHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccHHHHHHHHHHHHhh--hchhccCCCceeEEEeecCC
Confidence            9999999999999999999999999999999999999999999999999999999987  22223457999999999999


Q ss_pred             CCCCCCCCccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHH
Q 003927          562 WPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSE  641 (786)
Q Consensus       562 WP~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~i~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~e  641 (786)
                      ||.+++.++.||++|.++++.|..||.++|+||+|.|+|++|+|+|.++|.+++|+|+|||+|||||++||+.+.+|+++
T Consensus       506 WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~~~ei~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~e  585 (725)
T KOG2166|consen  506 WPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLGTGEINGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEE  585 (725)
T ss_pred             cCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccCceEEEEEecCceEEEEEEhHHHHHHHHccchhhccHHH
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCCCCcceEeecCCCchhhhhHHHhHHHHhhhhh
Q 003927          642 IMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAI  721 (786)
Q Consensus       642 i~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~F~~~~~ki~i~~~~~~e~~~~~~~v~~dR~~~i  721 (786)
                      |.++|+++.+++.++|+||++.|.+++.+ |.++. +|++.|.+|.+|+++++|+++|.++..|++++.+.+++||+..|
T Consensus       586 I~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~~~N~~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i  663 (725)
T KOG2166|consen  586 ILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEFAFNSKFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAI  663 (725)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEEEeeccccCcceeeccCCCCchhHHHHHhhhhhHHHHHH
Confidence            99999999999999999999988777766 77777 89999999999999999999998888898999999999999999


Q ss_pred             cceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 003927          722 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY  784 (786)
Q Consensus       722 ~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y  784 (786)
                      +||||||||+||.|.|++|+.||++|+++||.|++.+||+|||.|||||||+|| +|+++|+|
T Consensus       664 ~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~Ie~LIEkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  664 DAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRIEDLIEREYLERD-ENPNIYRY  725 (725)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccC
Confidence            999999999999999999999999999999999999999999999999999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-115
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-115
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-108
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-108
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 2e-94
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 3e-94
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 4e-53
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 4e-51
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-36
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-36
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-35
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-35
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-32
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 3e-32
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 6e-29
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 6e-25
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 6e-17
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 7e-11
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 2e-10
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 1e-05
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 1e-05
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 393/708 (55%), Gaps = 42/708 (5%)
Query: 87  VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 145
           +Y+ + N+C+    H  S  LY + R++ E+++ + +LP   +  D  + L+++   W +
Sbjct: 69  LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 146 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 202
           H   +  +   F +LDR ++ + S LP + ++GL  FR  + ++  +  K  D ++ LI+
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 184
Query: 203 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 262
           +ER GE +DR+LL+++L +     +  +  Y++ FE   L++T   Y+ +    + E   
Sbjct: 185 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 239
Query: 263 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322
           P+Y+    + L+ E DRV  YL  S++  L+  V+ +LL  +   +L+K   G   LL +
Sbjct: 240 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 296
Query: 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 382
           ++V DL++M++LFS++  G   +   + +++   GTA+V   E                +
Sbjct: 297 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 340
Query: 383 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 442
           ++  V+ +++  DK    +  CFQ +  F   +KE+FE F NK    +  AEL+A   D+
Sbjct: 341 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 398
Query: 443 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 502
            L+ G  E  +DE +E  L+K++ L  +I  KD+F  FY+K LA+RLL  KSA+ D E+S
Sbjct: 399 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 457
Query: 503 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 562
           +L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P IDLTV +LT G+W
Sbjct: 458 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 516
Query: 563 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 622
           P+Y   +++L  EM+K  EVF+ FY  K   RKL W  +LG   L  +F+    E  V+ 
Sbjct: 517 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 576
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 682
           +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L K P  K +   D 
Sbjct: 577 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 636
Query: 683 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 738
           F FN +F  K+ RIKI                      R+Y IDA+IVRIMK RK LGH 
Sbjct: 637 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 696
Query: 739 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
            LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 697 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-111
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 2e-89
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 5e-89
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 4e-85
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 8e-75
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 3e-30
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 1e-29
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 1e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 2e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  641 bits (1653), Expect = 0.0
 Identities = 232/804 (28%), Positives = 407/804 (50%), Gaps = 72/804 (8%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFF 70
           L+Q W+ ++ GI ++            +   YM LYT+                 ++N+ 
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTH-----------------VYNYC 37

Query: 71  LAFLWYCFFFFFSKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREK 130
            +                       T         +LY + +E  + Y+++ +L    + 
Sbjct: 38  TSVHQSN--QARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDL 94

Query: 131 HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDL 184
            DE +L+   ++W +++   + L+    YL+R+++ R      + +  +  + L  +RD 
Sbjct: 95  MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDC 154

Query: 185 VYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMD---------YYEN 235
           ++  LN +V +AV+ LI++ER GE I+  L+  V+  +VE+G+ + D          Y+ 
Sbjct: 155 LFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKE 214

Query: 236 DFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEK 295
            FE+  L DT  +Y+R+++ ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K
Sbjct: 215 SFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARK 274

Query: 296 VQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTA 355
            +  L+  +    LE  H+    LL  DK EDL RM+ L S+I  GL  +  + + H+  
Sbjct: 275 CEQVLIEKH----LEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHN 330

Query: 356 EGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSL 415
           +G A ++   +AA N             +++V+ V+++H KY A V   F N   F  +L
Sbjct: 331 QGLAAIEKCGEAALN-----------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAAL 379

Query: 416 KEAFEVF------CNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLA 469
            +A   F           + S S ELLA +CD++LKK  S+   +  +E+ L +V+ +  
Sbjct: 380 DKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK-SSKNPEEAELEDTLNQVMVVFK 438

Query: 470 YISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLA 529
           YI DKD+F +FY K LA+RL+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++
Sbjct: 439 YIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVS 498

Query: 530 RENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQT 589
           ++    F+++L+N+      +D ++ VL++G WP  +S    LP+E+ +  + F  FY +
Sbjct: 499 KDLNEQFKKHLTNSE--PLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYAS 556

Query: 590 KTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLS 649
           +   RKLTW+Y L    L+         L  +T+Q + LL +N+ D  +  ++     + 
Sbjct: 557 RHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIK 616

Query: 650 DDDVVRLLHSLSCAKYKILNKEPNTKT---ISPTDHFEFNSKFTDKMRRIKIPLP----P 702
            D + ++L  L  +K  +L  E        + P    +    + +K  R+ I +P     
Sbjct: 617 MDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQ 676

Query: 703 VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR 762
             E++   +++++DR+  I A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK 
Sbjct: 677 KQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKC 736

Query: 763 IEDLITRDYLERDKSNPNMFRYLA 786
           I+ LI ++YLER     + + YLA
Sbjct: 737 IDILIEKEYLERVDGEKDTYSYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.94
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.93
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.93
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.92
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 83.96
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 83.36
3jth_A98 Transcription activator HLYU; transcription factor 82.06
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 81.4
2jt1_A77 PEFI protein; solution structure, winged helix-tur 81.1
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 80.99
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=3.5e-142  Score=1272.87  Aligned_cols=707  Identities=32%  Similarity=0.586  Sum_probs=658.4

Q ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccchhhhH
Q 003927           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRT   90 (786)
Q Consensus        11 ~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lY~~   90 (786)
                      ||++|+.|++||++|.+      .++++...||+|||                                          +
T Consensus         1 f~~~W~~L~~ai~~I~~------~~~~s~~~~~~LY~------------------------------------------~   32 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYT------------------------------------------H   32 (760)
T ss_dssp             CHHHHHHHHHHHHHHTT------CCCCCHHHHHHHHH------------------------------------------H
T ss_pred             ChhhHHHHHHHHHHHHh------cCCCCHHHHHHHHH------------------------------------------H
Confidence            68999999999999854      25799999999999                                          9


Q ss_pred             HhhhhccC-----------------------CCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Q 003927           91 IYNMCTQK-----------------------PPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHK  147 (786)
Q Consensus        91 vY~~c~~~-----------------------~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~  147 (786)
                      ||++|+++                       +|+.+|++||+++++++++|+...+. .+....++.||..|.++|++|+
T Consensus        33 vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~  111 (760)
T 1ldj_A           33 VYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYR  111 (760)
T ss_dssp             HHHHTCCC----------------------------TTHHHHHHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHH
Confidence            99999997                       13457999999999999999998653 4455668899999999999999


Q ss_pred             HHHHHHHHhhcccchhhhhcCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Q 003927          148 VMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDI  221 (786)
Q Consensus       148 ~~~~~l~~vF~YLdR~yv~~~~------~~~i~~l~l~~fr~~vf~~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~  221 (786)
                      .++++|+++|+||||+||+++.      +++|+++||.+||++||.++++++.+++|++|+++|+|+.||+.+|+++++|
T Consensus       112 ~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~m  191 (760)
T 1ldj_A          112 FSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQS  191 (760)
T ss_dssp             HHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            9999999999999999999875      7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccC---------cccccHHhhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHH
Q 003927          222 FVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKL  292 (786)
Q Consensus       222 l~~lg~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl  292 (786)
                      |++||.+         ++.+|.+.||++||++|+.||+.+|+.|++++++++||++|+.+|++|.+||+.||+++|.++|
T Consensus       192 l~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l  271 (760)
T 1ldj_A          192 YVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDEL  271 (760)
T ss_dssp             HHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHH
T ss_pred             HHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHH
Confidence            9999863         3689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhccCChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 003927          293 LEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK  372 (786)
Q Consensus       293 ~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~  372 (786)
                      .++|+++||.+|.+.|+    +||..||++++.+||++||+||+|+|+|+++|+..|++||.+.|.+++.+..+..    
T Consensus       272 ~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~----  343 (760)
T 1ldj_A          272 ARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA----  343 (760)
T ss_dssp             HHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG----
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence            99999999999999885    5899999999999999999999999999999999999999999999997643111    


Q ss_pred             hhcccccccchhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCC------CCCCchHHHHHHHHHHHHhc
Q 003927          373 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG------VAGSSSAELLATFCDNILKK  446 (786)
Q Consensus       373 ~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~~~~f~~~l~~af~~~iN~~------~~~~~~~e~La~y~D~~lkk  446 (786)
                             ..+|..||+.||++|++|+.++..||++|+.|..++++||+.|+|.+      ....++||+||+|||.+||+
T Consensus       344 -------~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk  416 (760)
T 1ldj_A          344 -------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK  416 (760)
T ss_dssp             -------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBC
T ss_pred             -------ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhC
Confidence                   35789999999999999999999999999999999999999999987      23468999999999999998


Q ss_pred             CCCCCCChHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHH
Q 003927          447 GGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL  526 (786)
Q Consensus       447 ~~~~~~~~~e~e~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~s~d~E~~~I~~Lk~~~G~~~t~kl~~M~~D~  526 (786)
                      |. ++.++++++..|++++.||+|+++||+|+++|+++||+|||+++|+|.|+|+.||++||.+||.+||+||++||+|+
T Consensus       417 ~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di  495 (760)
T 1ldj_A          417 SS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDI  495 (760)
T ss_dssp             CS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            74 55688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEE
Q 003927          527 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN  606 (786)
Q Consensus       527 ~~S~~l~~~F~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~  606 (786)
                      ..|++++..|++++.++  ...+++|+|.|||+|+||.++..++.||++|+.+++.|++||..+|+||+|+|+|++|+|+
T Consensus       496 ~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~  573 (760)
T 1ldj_A          496 GVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE  573 (760)
T ss_dssp             HHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCE
T ss_pred             HHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEE
Confidence            99999999999987651  1246999999999999999988899999999999999999999999999999999999999


Q ss_pred             EEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC-----CCCCCCCCC
Q 003927          607 LLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTD  681 (786)
Q Consensus       607 i~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~  681 (786)
                      |+++|++++|+|+||++||+||++||+.+++|++||++.||+++++|+++|.+|+  |.+||.+.|     +|+.+.+++
T Consensus       574 l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~  651 (760)
T 1ldj_A          574 LVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDT  651 (760)
T ss_dssp             EEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTC
T ss_pred             EEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999997  778998565     788899999


Q ss_pred             eEEEccCCCCCcceEeecCCCch----hhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChH
Q 003927          682 HFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFK  757 (786)
Q Consensus       682 ~f~~N~~F~~~~~ki~i~~~~~~----e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~  757 (786)
                      .|++|.+|++++.||+||.+...    |.+++.+.|++||++.||||||||||+||+|+|++|++||++|+++||+|++.
T Consensus       652 ~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~  731 (760)
T 1ldj_A          652 LIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP  731 (760)
T ss_dssp             EEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHH
T ss_pred             EEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHH
Confidence            99999999999999999876543    34557789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccccCCCCCceeecC
Q 003927          758 AIKKRIEDLITRDYLERDKSNPNMFRYLA  786 (786)
Q Consensus       758 ~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a  786 (786)
                      +||+|||.|||||||+|+++|+++|+|+|
T Consensus       732 ~IKk~Ie~LIereYl~R~~~~~~~y~YlA  760 (760)
T 1ldj_A          732 VIKKCIDILIEKEYLERVDGEKDTYSYLA  760 (760)
T ss_dssp             HHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred             HHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence            99999999999999999999999999998
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 786
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-90
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-86
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 5e-86
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-85
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 3e-30
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 4e-30
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 2e-28
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  283 bits (726), Expect = 1e-90
 Identities = 110/274 (40%), Positives = 167/274 (60%), Gaps = 2/274 (0%)

Query: 430 SSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRL 489
           +  AEL+A   D+ L+ G +++ +DE +E  L+K++ L  +I  KD+F  FY+K LA+RL
Sbjct: 1   NKPAELIAKHVDSKLRAG-NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRL 59

Query: 490 LFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPG 549
           L  KSA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P 
Sbjct: 60  LVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP- 118

Query: 550 IDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLG 609
           IDLTV +LT G+WP+Y   +++L  EM+K  EVF+ FY  K   RKL W  +LG   L  
Sbjct: 119 IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKA 178

Query: 610 KFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669
           +F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L 
Sbjct: 179 EFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 238

Query: 670 KEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPV 703
           K P  K +   D F FN +F  K+ RIKI    +
Sbjct: 239 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM 272
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.92
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.89
d1mkma175 Transcriptional regulator IclR, N-terminal domain 85.72
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 84.66
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 84.49
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 83.28
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 82.86
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 81.39
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 80.27
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-60  Score=526.36  Aligned_cols=352  Identities=30%  Similarity=0.561  Sum_probs=322.8

Q ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccchhhhH
Q 003927           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRT   90 (786)
Q Consensus        11 ~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lY~~   90 (786)
                      +|++|+.|++||++|.+      .++++..+||++|+                                          +
T Consensus         1 ~d~~W~~L~~ai~~I~~------~~~~~~~~~~~lY~------------------------------------------~   32 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYT------------------------------------------H   32 (394)
T ss_dssp             CHHHHHHHHHHHHHHTT------CCCCCHHHHHHHHH------------------------------------------H
T ss_pred             CcchHHHHHHHHHHHHh------cCCCCHHHHHHHHH------------------------------------------H
Confidence            58999999999999853      45789999999999                                          9


Q ss_pred             HhhhhccCCCC-----------------------CchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Q 003927           91 IYNMCTQKPPH-----------------------DYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHK  147 (786)
Q Consensus        91 vY~~c~~~~~~-----------------------~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~  147 (786)
                      ||++|+++++.                       ..|++||+++++.++.|+.+. .+.+....++++|..|.+.|++|+
T Consensus        33 vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l~~~l~~i-~~~~~~~~~~~~L~~~~~~W~~~~  111 (394)
T d1ldja2          33 VYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQWEDYR  111 (394)
T ss_dssp             HHHHTCCC----------------------------TTHHHHHHHHHHHHHHHHH-HHTTCSCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999987421                       148899999999999999874 466767778899999999999999


Q ss_pred             HHHHHHHHhhcccchhhhhcC------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Q 003927          148 VMVRWLSRFFHYLDRYFIARR------SLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDI  221 (786)
Q Consensus       148 ~~~~~l~~vF~YLdR~yv~~~------~~~~i~~l~l~~fr~~vf~~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~  221 (786)
                      .++.+|+++|+||||+|++++      +.++|+++|+.+|+++||.++++++.++++++|+++|+|+.+|+.+|++++.|
T Consensus       112 ~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~  191 (394)
T d1ldja2         112 FSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQS  191 (394)
T ss_dssp             HHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            999999999999999999875      35799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccC---------cccccHHhhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHH
Q 003927          222 FVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKL  292 (786)
Q Consensus       222 l~~lg~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl  292 (786)
                      |+.||..         .+++|.+.||++||++|.+||++++..|+++.++++||++|+.++++|.+||+.||+++|.++|
T Consensus       192 l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l  271 (394)
T d1ldja2         192 YVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDEL  271 (394)
T ss_dssp             HHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHH
T ss_pred             HHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHccChhhHHHH
Confidence            9999853         3578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhccCChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 003927          293 LEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK  372 (786)
Q Consensus       293 ~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~  372 (786)
                      .+.|+++||.+|.+.|.    +||..||++++.++|++||+||+++++|++.|+..|++||.+.|.++++.....+    
T Consensus       272 ~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~----  343 (394)
T d1ldja2         272 ARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA----  343 (394)
T ss_dssp             HHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG----
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhhhhcc----
Confidence            99999999999998773    5899999999999999999999999999999999999999999999987643221    


Q ss_pred             hhcccccccchhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCC
Q 003927          373 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG  426 (786)
Q Consensus       373 ~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~~~~f~~~l~~af~~~iN~~  426 (786)
                             ..+|..||+.|+++|++|+.++..||++|+.|.+++++||+.|+|+|
T Consensus       344 -------~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n  390 (394)
T d1ldja2         344 -------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN  390 (394)
T ss_dssp             -------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred             -------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcc
Confidence                   35789999999999999999999999999999999999999999987
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure