Citrus Sinensis ID: 003941
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VYU6 | 725 | Golgin candidate 4 OS=Ara | yes | no | 0.910 | 0.984 | 0.566 | 0.0 | |
| Q84WU4 | 712 | Golgin candidate 3 OS=Ara | no | no | 0.900 | 0.991 | 0.549 | 0.0 |
| >sp|Q8VYU6|GOGC4_ARATH Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/791 (56%), Positives = 570/791 (72%), Gaps = 77/791 (9%)
Query: 1 MRGTLANYKENLNKIALDVHYDDDGEE--LKIYDSRNVDDMSVSDRRDSHSFANSKSVSW 58
M ++AN KENLNKIA DVH DD+ ++ L IY S N +DRR+S+ F S+S
Sbjct: 1 MWSSVANLKENLNKIAHDVHDDDEDDDEDLTIYGSTN----GGTDRRNSNGFRYSRS--- 53
Query: 59 SPVSNGFESPHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLL 118
P++NGFESP +PEIERYKAEI +LQ+SE+EIKALSVNYAALLKEKE+QISRLN E G L
Sbjct: 54 -PMANGFESPVNPEIERYKAEINKLQKSESEIKALSVNYAALLKEKEDQISRLNQENGSL 112
Query: 119 KQNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGF 178
KQNL +TNAAL R S+AS+N N KG+GD SP+R + KNR+ Q+ NG
Sbjct: 113 KQNLTSTNAALKESRLDLSRASNN--NAIKGNGDHSPNRSQRSPTNWKNRN---QMNNGI 167
Query: 179 -SKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMEL 237
SK +G N S + KEKE A++LEE+ RS+A+ +A EL
Sbjct: 168 ASKPNGTENDSES-----------HKKEKEFAEMLEERTRSMASAQA----------REL 206
Query: 238 EQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297
E++R K A++Q+ LQEE++ NE+F++EL+SL++DK+KT +E ++R+EL+ KL+E+R+LQ
Sbjct: 207 EKEREKSANLQILLQEERKQNETFKEELQSLRLDKEKTLMESNKVRRELDAKLAEIRQLQ 266
Query: 298 MELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP---- 353
M+LN E ENLK V LEKENN LK++++EL AALE ++KS++ K+FP
Sbjct: 267 MKLNGGEQHAFGISRENLKEVNKALEKENNELKLKRSELEAALEASQKSTSRKLFPKSTE 326
Query: 354 DASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413
D S + S LD + + FPGKE+ME+SLQ+LEK+L+E E+DKA QEL RLKQHL+EK
Sbjct: 327 DLSRHLSSLDEEKAGT--FPGKEDMEKSLQRLEKELEEARREKDKARQELKRLKQHLLEK 384
Query: 414 AQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEI 473
EESEKMDEDS++I+ELR+ NEYQR+QIL LE L+QT+A QEE K + EI+KSK I
Sbjct: 385 ETEESEKMDEDSRLIDELRQTNEYQRSQILGLEKALRQTMANQEEIKSSSDLEIRKSKGI 444
Query: 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 533
I+ LN KLANC+RTI++KNVELLNLQTALGQY+AEIEAK H ERELA+A+E++ KLS L
Sbjct: 445 IEDLNQKLANCLRTIDSKNVELLNLQTALGQYYAEIEAKEHFERELAVAKEDAMKLSARL 504
Query: 534 KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593
K+ D++ E S+ EKEEI K+ H+E + AE K R +K+E+DNAK+R +EQSMTRLNRMS
Sbjct: 505 KDVDEQLESSKKEKEEITSKVLHAENIAAEWKNRVSKVEDDNAKVRRVLEQSMTRLNRMS 564
Query: 594 VDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQG-AGKGVVR 652
+DSDFLVDRRIVIKLLVTYFQRNHS+EVLDLMVRMLGFS+E+KQRIG+AQQG AGKGVVR
Sbjct: 565 MDSDFLVDRRIVIKLLVTYFQRNHSREVLDLMVRMLGFSEEEKQRIGLAQQGAAGKGVVR 624
Query: 653 GVLGLPGRLVGGIIGGSQ--ADANAKMASENQSFADLWVDFLLKETEERERRESAENMAR 710
GVLG PGRLVGGI+GG D++ MAS+NQSFAD+WV+FLLK+ EERERRE+ + +
Sbjct: 625 GVLGFPGRLVGGILGGGGGSPDSHPNMASDNQSFADMWVEFLLKDAEERERREAEDAANK 684
Query: 711 SKEDIHGRSRTTAETSPTAVPGFSRSNLSPSQNLNPLSSQGNFRQLEHSDSEFSTVPLSS 770
+E A S T P + E SDSEFSTVPL+S
Sbjct: 685 EQE--------KATVSSTQRPKY-----------------------EQSDSEFSTVPLTS 713
Query: 771 SKSNSRLSRLL 781
S SN RLSRLL
Sbjct: 714 SNSNHRLSRLL 724
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Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WU4|GOGC3_ARATH Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| 225454379 | 790 | PREDICTED: golgin candidate 4-like isofo | 0.983 | 0.975 | 0.661 | 0.0 | |
| 255541734 | 755 | Structural maintenance of chromosome 1 p | 0.950 | 0.986 | 0.650 | 0.0 | |
| 359489673 | 776 | PREDICTED: golgin candidate 4-like isofo | 0.970 | 0.980 | 0.660 | 0.0 | |
| 297745365 | 729 | unnamed protein product [Vitis vinifera] | 0.871 | 0.936 | 0.681 | 0.0 | |
| 224067944 | 734 | predicted protein [Populus trichocarpa] | 0.927 | 0.990 | 0.622 | 0.0 | |
| 224130406 | 729 | predicted protein [Populus trichocarpa] | 0.926 | 0.995 | 0.618 | 0.0 | |
| 356522556 | 782 | PREDICTED: golgin candidate 3-like [Glyc | 0.970 | 0.973 | 0.600 | 0.0 | |
| 356560312 | 783 | PREDICTED: golgin candidate 4-like [Glyc | 0.971 | 0.973 | 0.584 | 0.0 | |
| 357507611 | 755 | Golgin candidate [Medicago truncatula] g | 0.952 | 0.989 | 0.570 | 0.0 | |
| 356566931 | 758 | PREDICTED: golgin candidate 3-like [Glyc | 0.948 | 0.981 | 0.575 | 0.0 |
| >gi|225454379|ref|XP_002279017.1| PREDICTED: golgin candidate 4-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/803 (66%), Positives = 638/803 (79%), Gaps = 32/803 (3%)
Query: 1 MRGTLANYKENLNKIALDVHYDDDGEELKIYDSR-NVDDMSVSDRRDSHSFANSKSVSWS 59
M T+AN KENLNKIALDVH DDD EEL+I+ +D SVSDRR SH +A+S
Sbjct: 1 MWSTIANLKENLNKIALDVH-DDDDEELQIHAPVVAAEDPSVSDRRFSHKYAHS------ 53
Query: 60 PVSNGFESPHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLK 119
NG +S ++ EIE+YKAEIKRLQESEAEIKALS+NYAALLK+KE+QIS+L+ E G LK
Sbjct: 54 ---NGIDSAYNSEIEQYKAEIKRLQESEAEIKALSINYAALLKDKEDQISKLSKENGSLK 110
Query: 120 QNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLTAQVKNRHAGHQLQNGFS 179
NLD+TNA L+A R+ NS+ S+N ++ KGSGD SPSRQHKLTAQVK R G+Q+ NG
Sbjct: 111 HNLDSTNAVLSASRSENSRTSTNSLHALKGSGDQSPSRQHKLTAQVKGRSTGNQMHNGVV 170
Query: 180 KQDGVSNG-SHALQTEVVQS------SKMQGKEKELADLLEEKNRSLAAERAAYESQTRQ 232
KQDG+SNG +HA+Q + QS S ++G EKELADLLEEKNRSLAA +A +E Q +Q
Sbjct: 171 KQDGLSNGIAHAVQPDAAQSKMETKNSNLKGNEKELADLLEEKNRSLAALQATHELQIKQ 230
Query: 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE 292
LRMEL+++R+K ++ LKLQEE +LN SF ++L SLKMDK+KTS+E+ ++R ELN K S
Sbjct: 231 LRMELDKERDKLKNINLKLQEENKLNHSFLEDLNSLKMDKEKTSMEMNKIRSELNEKRSV 290
Query: 293 LRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIF 352
++RLQMELNRRE+ +AND+VE+LK V+A LEKEN+ LK EK E+ AL ++K+S +KI
Sbjct: 291 IQRLQMELNRREEEEANDMVESLKGVIANLEKENSCLKREKDEMEVALRMSKKASTDKIS 350
Query: 353 PDASE----YPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 408
PD S+ + S L+ ++ SS SFPGKEEM+ SLQ++E+DLKE C ERDKALQELTRLKQ
Sbjct: 351 PDVSDASEKHFSSLNEQVNSSGSFPGKEEMQISLQQVERDLKEACQERDKALQELTRLKQ 410
Query: 409 HLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 468
HL+EK EESEKMDEDSKIIEELR+NNEYQRAQIL+LE LKQ +A+Q+E KM+N SE+Q
Sbjct: 411 HLLEKESEESEKMDEDSKIIEELRQNNEYQRAQILNLEKALKQAIARQDEIKMLNSSELQ 470
Query: 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAK 528
KSKEIID LN KLA+ M T++AKNVELLNLQTALGQY+AE+EAK LER+LA AREESAK
Sbjct: 471 KSKEIIDDLNKKLASYMCTLDAKNVELLNLQTALGQYYAEMEAKERLERDLAHAREESAK 530
Query: 529 LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTR 588
LSE LK+A Q+AE+S+ EKEEIL KLS +E ML EGK R NKLEEDN KLR A+EQSM R
Sbjct: 531 LSELLKDASQQAELSKREKEEILAKLSQAETMLGEGKSRVNKLEEDNMKLRRALEQSMIR 590
Query: 589 LNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQGAGK 648
LNRMS+DSD+ VDRRIV+KLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIG+AQQG GK
Sbjct: 591 LNRMSMDSDYFVDRRIVVKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGVAQQGTGK 650
Query: 649 GVVRGVLGLPGRLVGGIIGGSQADANAKMASENQSFADLWVDFLLKETEERERRESAENM 708
GVVRGVLGLPGRLVGGI+GGS +A A +ASENQSFADLWVDFLLKETEERERRE+ +
Sbjct: 651 GVVRGVLGLPGRLVGGILGGSSGEAQANVASENQSFADLWVDFLLKETEERERREAVDVT 710
Query: 709 ARSKEDIHGRSRTTAETSPT-----AVPGFSRSNLSPSQNLNPLS--SQGNFRQLEHSDS 761
K D H RS +SP A GFSR L+P+ N NP S S G+ Q E SDS
Sbjct: 711 GAPKGDPH-RSPNFPGSSPMPDRVGAASGFSR--LNPAVNPNPSSMFSHGSVLQSEASDS 767
Query: 762 EFSTVPLSSSKSNSRLSRLLPDH 784
EFS VPL+S++S+SRLSRLLP +
Sbjct: 768 EFSNVPLTSAESSSRLSRLLPKY 790
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541734|ref|XP_002511931.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] gi|223549111|gb|EEF50600.1| Structural maintenance of chromosome 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359489673|ref|XP_003633963.1| PREDICTED: golgin candidate 4-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297745365|emb|CBI40445.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224067944|ref|XP_002302611.1| predicted protein [Populus trichocarpa] gi|222844337|gb|EEE81884.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224130406|ref|XP_002320829.1| predicted protein [Populus trichocarpa] gi|222861602|gb|EEE99144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356522556|ref|XP_003529912.1| PREDICTED: golgin candidate 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356560312|ref|XP_003548437.1| PREDICTED: golgin candidate 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357507611|ref|XP_003624094.1| Golgin candidate [Medicago truncatula] gi|355499109|gb|AES80312.1| Golgin candidate [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356566931|ref|XP_003551678.1| PREDICTED: golgin candidate 3-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 784 | ||||||
| TAIR|locus:2082782 | 712 | GDAP1 "GRIP-related ARF-bindin | 0.618 | 0.681 | 0.557 | 2.5e-136 | |
| TAIR|locus:2062984 | 725 | GC4 "AT2G46180" [Arabidopsis t | 0.826 | 0.893 | 0.453 | 6.6e-136 | |
| DICTYBASE|DDB_G0346831 | 1369 | DDB_G0346831 [Dictyostelium di | 0.517 | 0.296 | 0.194 | 2.6e-18 | |
| UNIPROTKB|F1SQ11 | 1411 | EEA1 "Uncharacterized protein" | 0.641 | 0.356 | 0.215 | 7.9e-15 | |
| SGD|S000002764 | 944 | SPC110 "Inner plaque spindle p | 0.686 | 0.569 | 0.219 | 3.4e-14 | |
| DICTYBASE|DDB_G0287291 | 1738 | abpD "interaptin" [Dictyosteli | 0.683 | 0.308 | 0.209 | 7.5e-14 | |
| UNIPROTKB|J9P2D7 | 1364 | EEA1 "Uncharacterized protein" | 0.633 | 0.364 | 0.220 | 1.9e-13 | |
| UNIPROTKB|Q15075 | 1411 | EEA1 "Early endosome antigen 1 | 0.632 | 0.351 | 0.223 | 2e-13 | |
| UNIPROTKB|F1PZD3 | 1411 | EEA1 "Uncharacterized protein" | 0.633 | 0.352 | 0.220 | 2e-13 | |
| ZFIN|ZDB-GENE-041111-270 | 1398 | eea1 "early endosome antigen 1 | 0.621 | 0.348 | 0.207 | 5.4e-13 |
| TAIR|locus:2082782 GDAP1 "GRIP-related ARF-binding domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1315 (468.0 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 275/493 (55%), Positives = 353/493 (71%)
Query: 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRR 295
EL ++R K D QL LQEE++ +ESF++EL+S+++DK+KTS+EI++MR EL+ KL E++
Sbjct: 200 ELAKEREKLRDFQLSLQEERKRSESFKEELESMRLDKNKTSMEISKMRSELDAKLLEIKH 259
Query: 296 LQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDA 355
LQM+L +E +E+LK V LEKENN LK++++EL AALE++RK +N K+FPDA
Sbjct: 260 LQMKLTGQESHAIGPGMEHLKEVNKALEKENNELKLKRSELEAALEESRKLTNSKVFPDA 319
Query: 356 SE----YPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 411
+E +PS LD + ESFPGKEEMEQSLQ+LE DLKET ERDKA QEL RLKQHL+
Sbjct: 320 TESLTRHPSTLDKE--KPESFPGKEEMEQSLQRLEMDLKETQRERDKARQELKRLKQHLL 377
Query: 412 EKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSK 471
EK EESEKMDEDS++IEELR+ NEYQR+QI HLE LKQ ++ QE+ ++ N ++I+K K
Sbjct: 378 EKETEESEKMDEDSRLIEELRQTNEYQRSQISHLEKSLKQAISNQEDNRLSNDNQIRKLK 437
Query: 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHXXXXXXXXXXXXXXXXX 531
+ +D LN KL NC+RTIE+KNVELLNLQTALGQY+AEIEAK H
Sbjct: 438 DTVDDLNQKLTNCLRTIESKNVELLNLQTALGQYYAEIEAKEHFERELAMAKDELMKLSA 497
Query: 532 YLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591
LK++D+R E S EKE++ KL H+EK+ AE K R K+EEDNAK+R +EQSMTRLNR
Sbjct: 498 RLKDSDERLESSNKEKEDVTSKLLHAEKVAAEWKNRVTKVEEDNAKVRRVLEQSMTRLNR 557
Query: 592 MSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQQXXXXXXX 651
MS++SD+LVDRRIVIKLLVTYFQ+NH+KEVLDLMVRMLGFS+EDK+RIG A+Q
Sbjct: 558 MSMESDYLVDRRIVIKLLVTYFQKNHNKEVLDLMVRMLGFSEEDKERIGAAKQGGGKGVV 617
Query: 652 XXXXXXXXXXXXXXXXXSQADANAKMASENQSFADLWVDFLLKXXXXXXXXXSAENMA-R 710
A+ +A AS+NQSFADLWVDFLLK + E A +
Sbjct: 618 RGVLGFPGRFVGGILGGKSAELHANAASDNQSFADLWVDFLLKDAEERERREAEEAAASK 677
Query: 711 SKEDIHGRSRTTA 723
+K+D R+R A
Sbjct: 678 AKQDSE-RTRQEA 689
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| TAIR|locus:2062984 GC4 "AT2G46180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0346831 DDB_G0346831 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| SGD|S000002764 SPC110 "Inner plaque spindle pole body (SPB) component" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0287291 abpD "interaptin" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15075 EEA1 "Early endosome antigen 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041111-270 eea1 "early endosome antigen 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VYU6 | GOGC4_ARATH | No assigned EC number | 0.5663 | 0.9107 | 0.9848 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 784 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| pfam05483 | 787 | pfam05483, SCP-1, Synaptonemal complex protein 1 ( | 0.002 | |
| TIGR01069 | 771 | TIGR01069, mutS2, MutS2 family protein | 0.002 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.004 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.004 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.004 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-11
Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 55/390 (14%)
Query: 204 KEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQD 263
+ K + + + + L E A E+Q +L EL+ +N+ ++ L+E +R E +
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLE 323
+L+ LK + E+ +++ L EL L+ EL + + +E L+ + +LE
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELE-----ELQERLEELEEELESLE 771
Query: 324 KENNSLKMEKTEL---VAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQ 380
+ LK E EL AL++ + E++ EE E+
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEEL------------------------EEAER 807
Query: 381 SLQKLEKDLKETCSERDKALQELTRLKQ---HLIEKAQEESEKMDEDSKIIEELRENNEY 437
L LE++L+ R++ QE+ L++ L EK E E+++E K +EEL+E E
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
Query: 438 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLN 497
A+ LE+ LK+ ++EE +E + L ++LA IE L
Sbjct: 868 LEAEKEELEDELKELEEEKEEL-----------EEELRELESELAELKEEIEKLRERLEE 916
Query: 498 LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEI----LVK 553
L+ L + E+ E E L E L L+ +R E + + +
Sbjct: 917 LEAKLERLEVELP-----ELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEE 971
Query: 554 LSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583
E+ E K + LEE KL +E
Sbjct: 972 YEEVEERYEELKSQREDLEEAKEKLLEVIE 1001
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) | Back alignment and domain information |
|---|
| >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.91 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.88 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.79 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.71 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.69 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.67 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.65 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.64 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.64 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.61 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.59 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.55 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.42 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.35 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 98.34 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.14 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.99 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.98 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.87 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.85 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 97.82 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.81 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.79 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.79 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 97.77 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 97.71 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 97.69 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.65 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.64 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.51 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 97.51 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.48 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 97.46 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.43 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.4 | |
| PRK11637 | 428 | AmiB activator; Provisional | 97.38 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.37 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.34 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.33 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.32 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 97.3 | |
| PF10375 | 19 | GRAB: GRIP-related Arf-binding domain ; InterPro: | 97.24 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.24 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.22 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.06 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.06 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 97.05 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.98 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.96 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.94 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.91 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 96.86 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 96.73 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.71 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.62 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 96.55 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 96.54 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 96.47 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.46 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 96.4 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.4 | |
| PF13514 | 1111 | AAA_27: AAA domain | 96.33 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 96.3 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 96.11 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 96.09 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.07 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.02 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.0 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 95.94 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.86 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 95.85 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 95.84 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 95.81 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 95.81 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 95.78 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.78 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 95.73 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.7 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 95.66 | |
| PF01465 | 46 | GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g | 95.64 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 95.58 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.54 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 95.54 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 95.46 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 95.45 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 95.43 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 95.4 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.24 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 94.96 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 94.94 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.73 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 94.58 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.53 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 94.47 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.41 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 94.39 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 94.35 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 94.26 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 94.15 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 94.04 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 94.02 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 93.92 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 93.88 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 93.8 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 93.78 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.72 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 93.65 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 93.44 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.32 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 93.3 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 93.01 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 92.79 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 92.75 | |
| PF13514 | 1111 | AAA_27: AAA domain | 92.67 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.5 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 92.38 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 92.33 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.29 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 92.26 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 92.19 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 91.98 | |
| smart00755 | 46 | Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin- | 91.88 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 91.74 | |
| KOG2129 | 552 | consensus Uncharacterized conserved protein H4 [Fu | 91.71 | |
| KOG4302 | 660 | consensus Microtubule-associated protein essential | 91.57 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 91.56 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 91.44 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 91.25 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 91.14 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 91.13 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 90.84 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 90.73 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 90.44 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 90.31 | |
| KOG2991 | 330 | consensus Splicing regulator [RNA processing and m | 89.96 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 89.91 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 89.81 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 89.58 | |
| PF06548 | 488 | Kinesin-related: Kinesin-related; InterPro: IPR010 | 89.44 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 89.39 | |
| KOG4603 | 201 | consensus TBP-1 interacting protein [Signal transd | 89.38 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 89.31 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 89.23 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 89.06 | |
| PF13870 | 177 | DUF4201: Domain of unknown function (DUF4201) | 88.86 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 88.65 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 88.28 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 88.25 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 88.25 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 88.18 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 88.12 | |
| PF08826 | 61 | DMPK_coil: DMPK coiled coil domain like; InterPro: | 88.09 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.98 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 87.34 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 87.26 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 86.66 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 86.45 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 86.38 | |
| TIGR03017 | 444 | EpsF chain length determinant protein EpsF. Sequen | 85.95 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 85.57 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 85.35 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 85.16 | |
| PF03999 | 619 | MAP65_ASE1: Microtubule associated protein (MAP65/ | 84.84 | |
| PF07989 | 75 | Microtub_assoc: Microtubule associated; InterPro: | 84.8 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 84.51 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 84.4 | |
| KOG0249 | 916 | consensus LAR-interacting protein and related prot | 84.09 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 83.55 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 83.53 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 83.53 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 83.25 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 82.7 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 82.38 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 82.31 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 82.26 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 82.16 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 82.08 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 81.79 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 81.35 | |
| COG2433 | 652 | Uncharacterized conserved protein [Function unknow | 80.99 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 80.91 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 80.89 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 80.43 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 80.32 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 80.29 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 80.27 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-05 Score=89.35 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHhccc--ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCC
Q 003941 274 KTSIEITEMRKELNGKLSELRRLQMELNRR--EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (784)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~ 349 (784)
.....+..+..++.....++..+...|..- +-.+..+.++.++..+..+......++..+..+...|+.++..+..
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 451 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA 451 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444321 1123335677888888888888888888888888888888754333
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245 | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] | Back alignment and domain information |
|---|
| >KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG2991 consensus Splicing regulator [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF13870 DUF4201: Domain of unknown function (DUF4201) | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR03017 EpsF chain length determinant protein EpsF | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins | Back alignment and domain information |
|---|
| >PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >COG2433 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 85.7 bits (211), Expect = 3e-17
Identities = 69/455 (15%), Positives = 147/455 (32%), Gaps = 100/455 (21%)
Query: 204 KEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESF-Q 262
++E+ ++ K+ S T +L L ++ + VQ ++E R+N F
Sbjct: 47 SKEEIDHIIMSKDA---------VSGTLRLFWTLLSKQEEM--VQKFVEEVLRINYKFLM 95
Query: 263 DELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATL 322
+K+ + + E R L + ++R + L++ + L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQP------YLKLRQALLEL 147
Query: 323 EKENN-SLK-ME---KTELVAALEKNRKSSNEKIFPDASEYPSRLD-GKMVSSESFPGKE 376
N + + KT + + + K + + L+ S E+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFW---LNLKNCNSPET----- 197
Query: 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNE 436
+E LQKL + D + ++ + + + L ++
Sbjct: 198 VLEM-LQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKP 242
Query: 437 YQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRT-IEAKNVEL 495
Y+ +L L NV ++ + + N C + + + ++
Sbjct: 243 YENC-LLVLLNV--------------------QNAKAWNAFNLS---C-KILLTTRFKQV 277
Query: 496 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEI--LVK 553
+ +A ++ + L +E L LK D R + E
Sbjct: 278 TDFLSAATTTHISLD-----HHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRR- 329
Query: 554 LSHSEKMLAEGKGRANKLEEDNA-KLRLAVEQSMTRLN---------RMSVDSDFLVDRR 603
LS + + +G + + N KL +E S+ L R+SV F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAH 386
Query: 604 IVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQR 638
I LL + +V+ ++ ++ +S +KQ
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 784 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.65 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.45 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.39 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 98.34 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.35 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 97.06 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 96.64 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.24 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 95.67 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 95.41 | |
| 1go4_E | 100 | MAD1 (mitotic arrest deficient)-like 1; mitotic sp | 94.09 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 93.62 | |
| 1wt6_A | 81 | Myotonin-protein kinase; coiled-coil, kinase activ | 93.59 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 92.78 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 92.63 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 92.16 | |
| 1upt_B | 60 | Golgi autoantigen, golgin subfamily A member 4; hy | 90.14 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 87.12 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 84.67 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 83.87 | |
| 3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coi | 80.68 | |
| 1deq_A | 390 | Fibrinogen (alpha chain); coiled-coil, blood clott | 80.31 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=98.65 E-value=0.00026 Score=65.12 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=19.3
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 555 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 555 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
......+..+...+..+......++..++....+|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 247 TKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555555555556566555555544
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E* | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
| >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00