Citrus Sinensis ID: 003943

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780----
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVILILLHHVLSSSCVLNSK
ccccccccccEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEcccccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEcccccccccccHHHHccccccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccccccccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEEccccHHHHHHHHccEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEccc
cccccccccccEEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEEEccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEcccccccHHHHHHHHHccccEEEcccHcccccHHHHHHHHHHHHHHHHHHccHcccccccccHHHHcccccEEEEEEEEcccEEEEEEcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccHHHHHHHHHcccEEEcccHHHccccHHHHHHHHHHHHHHHHcHHHccccccccccccHHHHHcccEEEEEEEEEHcEccccEEEccc
matpaaagggwyrarvkavpsgdSLVITAlsnpnpgpprektltlssiitprlarrggldepfawDSREFLRKLCigkevtfrvdyavpnigrefgtvilgDKNVAMLVVSEGWAKVkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYvegeevsngaavegkQKEVLKVILILLHHVLssscvlnsk
matpaaagggwyrARVKAVPSGDSLVITAlsnpnpgpprekTLTLSSIItprlarrggldepfawdSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVkeqgsqkgeASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGeevsngaavegKQKEVLKVILILLHhvlssscvlnsk
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEvlkvilillhhvlssscvlnsK
*********GWYRARVKAVP**DSLVIT****************LSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKV*************LAELLRL*****LQGLGRW*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVEGEEVSNGAAVEGKQKEVLKVILILLHHVLSSSCV****
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST********DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN*****************GKVVEVVSGDCIIVADDSIPYGNALAERRVNLS******************YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIF**********************QPAGVNVAELVVSRGLGNVINHRDFEERSNYYDA*************************IQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG****YSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE******************KVILILLHHVLSSSCVLN**
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAK**********ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVEGEEVSNGAAVEGKQKEVLKVILILLHHVLSSSCVLNSK
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGR*********ASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA*************************PLNSAQRLAASTA**GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLS****************A***PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEE*SNGAAVEGKQKEVLKVILILLHHVLSSSCVLNS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVILILLHHVLSSSCVLNSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query784 2.2.26 [Sep-21-2011]
Q78PY7 910 Staphylococcal nuclease d yes no 0.779 0.671 0.353 1e-103
Q66X93 909 Staphylococcal nuclease d yes no 0.779 0.672 0.351 1e-103
Q863B3 910 Staphylococcal nuclease d yes no 0.779 0.671 0.347 1e-102
Q5REU4 910 Staphylococcal nuclease d yes no 0.779 0.671 0.347 1e-102
Q7KZF4 910 Staphylococcal nuclease d yes no 0.779 0.671 0.345 1e-102
Q7ZT42 897 Staphylococcal nuclease d yes no 0.801 0.700 0.345 1e-101
Q9Y7U7 878 Staphylococcal nuclease d yes no 0.488 0.436 0.281 1e-34
O60168230 Probable endonuclease C19 no no 0.218 0.743 0.237 3e-07
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function desciption
 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 271/766 (35%), Positives = 399/766 (52%), Gaps = 155/766 (20%)

Query: 13  RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL---------DEPF 63
           R  VK V SG ++++     P  GPP E+ + LS+I    LARR            DEP+
Sbjct: 21  RGIVKMVLSGCAIIVRG--QPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPW 78

Query: 64  AWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKE 119
           A+ +REFLRK  IGKEV F ++   P  GRE+G + LG     +N+A  +V+EG A  +E
Sbjct: 79  AFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLATRRE 137

Query: 120 QGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMAL 179
            G +    +P    L   EEQAK    G WS+  G    +IR+L    I +  +F     
Sbjct: 138 -GMRAN--NPEQNRLSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF----- 186

Query: 180 LDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 239
           +D++  +P+  I+E  RDGS +R  LLP    V V ++GI+ P   R           ET
Sbjct: 187 VDSHHQKPVNAIIEHVRDGSVVRALLLPGHHLVTVMLSGIKCPTFRR-----------ET 235

Query: 240 NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVD 299
           +G                            T EPFA +AK+FTE R+L R+V+I+LE   
Sbjct: 236 DGS--------------------------ETPEPFAAEAKFFTESRLLQRDVQIILESCH 269

Query: 300 KFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRL 359
             +NL+G++ +P+G    ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RL
Sbjct: 270 N-QNLLGTILHPNG----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRL 323

Query: 360 RMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419
           R+W +YVPP +N     D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P
Sbjct: 324 RIWRDYVPPTANLDQ-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPP 376

Query: 420 K-----IGNPRKDEKP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGA 471
           +     I +  K  +P     Y  EAREFLR +LIG++VNV ++Y R     A+P     
Sbjct: 377 RLEGDNIQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRP----ASP----- 427

Query: 472 KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSN 531
                          A    PA  E   AT T                            
Sbjct: 428 ---------------ATETVPAFSERTCATVT---------------------------- 444

Query: 532 AAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 590
                 G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P
Sbjct: 445 ----IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVP 500

Query: 591 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 650
           +  + D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ 
Sbjct: 501 IHRVADIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIE 559

Query: 651 CP--GRN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVA 700
           CP   RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++
Sbjct: 560 CPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLS 619

Query: 701 VILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
           V+L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E
Sbjct: 620 VLLVEQALSKVH--FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEE 663
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability (By similarity). Functions as a transcriptional coactivator for STAT5.
Mus musculus (taxid: 10090)
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|O60168|LCL3_SCHPO Probable endonuclease C19F8.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F8.04c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query784
307135996 988 short-chain dehydrogenase/reductase [Cuc 0.933 0.740 0.743 0.0
224136368 984 predicted protein [Populus trichocarpa] 0.931 0.741 0.746 0.0
449440482 988 PREDICTED: staphylococcal nuclease domai 0.933 0.740 0.744 0.0
356516458 990 PREDICTED: staphylococcal nuclease domai 0.937 0.742 0.744 0.0
356508886 990 PREDICTED: staphylococcal nuclease domai 0.937 0.742 0.738 0.0
225447723 1000 PREDICTED: staphylococcal nuclease domai 0.936 0.734 0.734 0.0
356527378 995 PREDICTED: staphylococcal nuclease domai 0.937 0.738 0.735 0.0
356512924 991 PREDICTED: staphylococcal nuclease domai 0.938 0.742 0.730 0.0
357464897 992 nuclease domain-containing protein [Medi 0.937 0.740 0.725 0.0
224122258 978 hypothetical protein POPTRDRAFT_806590 [ 0.924 0.741 0.725 0.0
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/772 (74%), Positives = 653/772 (84%), Gaps = 40/772 (5%)

Query: 2   ATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDE 61
           ++ A A  GWYR RVKAVPSGD LVITA+++  PGPP EKT+TLSS+I PRLARRGG+DE
Sbjct: 3   SSTAGATTGWYRGRVKAVPSGDCLVITAMASSKPGPPPEKTITLSSLIAPRLARRGGVDE 62

Query: 62  PFAWDSREFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQG 121
           PFAWDSRE+LRKLCIGKEV FRVDY VP+IGREFG+V L DKN+A LVVSEGWAKV+EQG
Sbjct: 63  PFAWDSREYLRKLCIGKEVAFRVDYTVPSIGREFGSVFLCDKNIAALVVSEGWAKVREQG 122

Query: 122 SQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLD 181
            QKGE SP+LAELLRLE+QAK QGLGRWSKVPGA+EASIRNLPPSAIGD SN +AM LL 
Sbjct: 123 QQKGEVSPYLAELLRLEDQAKQQGLGRWSKVPGASEASIRNLPPSAIGDPSNLDAMGLLA 182

Query: 182 ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARR--PAAIVDTD--TE 237
            NKG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAGIQAP++ RR  P  + +TD  + 
Sbjct: 183 VNKGKPMEGIVEQVRDGSTVRVYLLPEFQFVQVFVAGIQAPSMGRRAPPDTVAETDNSSN 242

Query: 238 ETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEG 297
           + NG+VSA E  A L SAQRLA S+ S+G+ +  E F ++AK+FTE+RVLNR+VRIVLEG
Sbjct: 243 DHNGEVSA-EPRATLTSAQRLAVSSTSSGEVAP-ETFGVEAKHFTEIRVLNRDVRIVLEG 300

Query: 298 VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKT 357
           VDKF NLIGSV+Y DGETAKDLA+EL+ENGLAKY+EWSANMMEEDAKRRLK A+LQAKKT
Sbjct: 301 VDKFSNLIGSVYYSDGETAKDLALELIENGLAKYVEWSANMMEEDAKRRLKTAELQAKKT 360

Query: 358 RLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIR 417
           RLR+W NYVPP +NSKAIHDQNF GKVVEVVSGDCIIVADDS+PYG+ LAERRVNLSSIR
Sbjct: 361 RLRLWANYVPPPTNSKAIHDQNFMGKVVEVVSGDCIIVADDSVPYGSPLAERRVNLSSIR 420

Query: 418 CPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGT 477
           CPK+GNPR+DEKPA YAREA+EFLRTRLIGRQV +QMEYSRKV +   P  A        
Sbjct: 421 CPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVKIQMEYSRKVSMVDGPATA-------- 472

Query: 478 KGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPA 537
                                   ++R++DFGS+FLLS  KGEG+D SA    N++ Q A
Sbjct: 473 ----------------------PPDSRVMDFGSVFLLSSTKGEGEDTSA---KNSSDQQA 507

Query: 538 GVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDL 597
           GVNV ELVVSRG G VI HRDFEERSNYYDALLAAE+RA AGKKG +S+K+PPVMH+ DL
Sbjct: 508 GVNVGELVVSRGFGTVIRHRDFEERSNYYDALLAAESRAIAGKKGIHSAKDPPVMHVTDL 567

Query: 598 TMAPVKKARDFLPFLQRS-RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNE 656
             AP KK+RDFLPFL RS RRIPAVVEYVLSGHRFK+LIPKETCSIAF+FSGVRCPGR+E
Sbjct: 568 LTAPAKKSRDFLPFLHRSGRRIPAVVEYVLSGHRFKLLIPKETCSIAFAFSGVRCPGRDE 627

Query: 657 RYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFG 716
            YS+EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWE+RTN+AV+L+EAGLAK+QTSF 
Sbjct: 628 PYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWEARTNMAVVLVEAGLAKIQTSFS 687

Query: 717 SDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVIL 768
           SDRIPD+HLLEQAE+SAK QKLKIWENYVEGEEVSNGAAVE KQKEVLKVI+
Sbjct: 688 SDRIPDAHLLEQAERSAKRQKLKIWENYVEGEEVSNGAAVESKQKEVLKVIV 739

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356512924|ref|XP_003525164.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224122258|ref|XP_002318790.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] gi|222859463|gb|EEE97010.1| hypothetical protein POPTRDRAFT_806590 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query784
TAIR|locus:2159218 985 Tudor2 "TUDOR-SN protein 2" [A 0.584 0.464 0.675 9.6e-253
ZFIN|ZDB-GENE-030131-3124 913 snd1 "staphylococcal nuclease 0.281 0.242 0.391 3.4e-88
MGI|MGI:1929266 910 Snd1 "staphylococcal nuclease 0.267 0.230 0.407 4.4e-87
UNIPROTKB|Q863B3 910 SND1 "Staphylococcal nuclease 0.293 0.252 0.379 4.5e-87
RGD|631340 909 Snd1 "staphylococcal nuclease 0.267 0.231 0.407 1.5e-86
UNIPROTKB|Q66X93 909 Snd1 "Staphylococcal nuclease 0.267 0.231 0.407 1.5e-86
UNIPROTKB|Q7KZF4 910 SND1 "Staphylococcal nuclease 0.267 0.230 0.407 1.5e-86
UNIPROTKB|E2RH91 910 SND1 "Uncharacterized protein" 0.267 0.230 0.407 6.2e-86
FB|FBgn0035121 926 Tudor-SN "Tudor-SN" [Drosophil 0.239 0.203 0.411 1.1e-80
UNIPROTKB|F1SML4594 SND1 "Uncharacterized protein" 0.221 0.292 0.384 3e-74
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 9.6e-253, Sum P(2) = 9.6e-253
 Identities = 315/466 (67%), Positives = 374/466 (80%)

Query:     1 MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
             MAT AA    W + RVKAV SGD LVITAL++   GPP EKT+TLSS++ P++ARRGG+D
Sbjct:     1 MATGAATENQWLKGRVKAVTSGDCLVITALTHNRAGPPPEKTITLSSLMAPKMARRGGID 60

Query:    61 EPFAWDSREFLRKLCIGKEVTFRVDYAVPNI-GREFGTVILGDKNVAMLVVSEGWAKVKE 119
             EPFAW+SREFLRKLCIGKEV F+VDY V  I GREFG+V LG++N+A LVV  GWAKV+ 
Sbjct:    61 EPFAWESREFLRKLCIGKEVAFKVDYKVEAIAGREFGSVYLGNENLAKLVVQNGWAKVRR 120

Query:   120 QGSQ-KGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMA 178
              G Q + + SP++AEL +LEEQA+ +G GRWSKVPGAAEASIRNLPPSA+GDS NF+AM 
Sbjct:   121 PGQQNQDKVSPYIAELEQLEEQAQQEGFGRWSKVPGAAEASIRNLPPSAVGDSGNFDAMG 180

Query:   179 LLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXX---XXXXXXXDTD 235
             LL A+KG+PM+GIVEQ RDGST+RVYLLPEFQFVQVFVAG                 D D
Sbjct:   181 LLAASKGKPMEGIVEQVRDGSTIRVYLLPEFQFVQVFVAGLQAPSMGRRQSTQEAVVDPD 240

Query:   236 -TEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNREVRIV 294
              T  +NGD SA E   PL +AQRL            D PFA++AKYFTE+RVLNR+VRIV
Sbjct:   241 VTATSNGDASA-ETRGPLTTAQRLAASAASSVEVSSD-PFAMEAKYFTELRVLNRDVRIV 298

Query:   295 LEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA 354
             LEGVDKF NLIGSV+Y DG+T KDL +ELVENGLAKY+EWSANM++E+AK++LKA +LQ 
Sbjct:   299 LEGVDKFNNLIGSVYYSDGDTVKDLGLELVENGLAKYVEWSANMLDEEAKKKLKATELQC 358

Query:   355 KKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLS 414
             KK R++MW NYVPP SNSKAIHDQNFTGKVVEVVSGDC++VADDSIP+G+ +AERRV LS
Sbjct:   359 KKNRVKMWANYVPPASNSKAIHDQNFTGKVVEVVSGDCLVVADDSIPFGSPMAERRVCLS 418

Query:   415 SIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKV 460
             SIR PK+GNPR++EKPA YAREA+EFLR +LIG +V VQMEYSRK+
Sbjct:   419 SIRSPKMGNPRREEKPAPYAREAKEFLRQKLIGMEVIVQMEYSRKI 464
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SML4 SND1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query784
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 4e-24
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-23
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 3e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 8e-20
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 9e-15
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 2e-14
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 5e-12
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 4e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 9e-11
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 4e-08
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 4e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 1e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 5e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 8e-04
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information 
 Score = 98.1 bits (245), Expect = 4e-24
 Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG----GLDEPFAWDS 67
            R  V+ V  GD++ +       P      T+ LS I  P  AR        DEPF  ++
Sbjct: 3   IRGVVERVIDGDTIRV--RLPKGP----LITIRLSGIDAPETARPNKGDGTPDEPFGEEA 56

Query: 68  REFLRKLCIGKEVTFRVDYAVPNIGREFGTVILGDK-NVAMLVVSEGWAKVKEQGSQKGE 126
           +EFL+KL +GK+V   VD      GR  GTV L    N+A  +V EG AKV        +
Sbjct: 57  KEFLKKLLLGKKVQVEVDSKDRY-GRFLGTVYLNGGNNIAEELVKEGLAKVYR---YADK 112

Query: 127 ASPFLAELLRLEEQAKLQGLGRWS 150
                 ELL  EE AK    G WS
Sbjct: 113 DEYVYDELLEAEEAAKKARKGLWS 136

Length = 137
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 784
KOG2039 875 consensus Transcriptional coactivator p100 [Transc 100.0
KOG2039875 consensus Transcriptional coactivator p100 [Transc 99.94
smart00318138 SNc Staphylococcal nuclease homologues. 99.94
smart00318138 SNc Staphylococcal nuclease homologues. 99.93
PRK06518177 hypothetical protein; Provisional 99.93
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.93
PRK06518177 hypothetical protein; Provisional 99.92
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.92
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.84
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.84
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.84
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.83
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-57  Score=537.45  Aligned_cols=638  Identities=45%  Similarity=0.718  Sum_probs=549.0

Q ss_pred             eEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCC-CCCChhHHHHHHHHHhhcCCCeEEEEEccccC
Q 003943           11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAVP   89 (784)
Q Consensus        11 ~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~-~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~d   89 (784)
                      ...|.|.+|.|||.+.++..  +..+++++..++|+.+.+|++.+++ +.++||+|++++|+|++++||.|.|..++...
T Consensus         4 ~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~~   81 (875)
T KOG2039|consen    4 RLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMSA   81 (875)
T ss_pred             EEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeecc
Confidence            45689999999999999984  4568889999999999999999874 34799999999999999999999999997456


Q ss_pred             CCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccccCCCCCCC
Q 003943           90 NIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIG  169 (784)
Q Consensus        90 ~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~r~i~~s~~~  169 (784)
                      .++|.+|.+++++.++++.|+..||+.+.+...   .+.+|...+...|.+|++.++|+|+.    .....+++.++   
T Consensus        82 ~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~---  151 (875)
T KOG2039|consen   82 NNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDS---  151 (875)
T ss_pred             ccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeecccc---
Confidence            679999999999899999999999999988764   33788899999999999999999993    33456888876   


Q ss_pred             CCchhhHHHHHhhhcCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCcccccc
Q 003943          170 DSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEA  248 (784)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~iVe~V~dG~-t~rv~~~~~~~~i~v~l~GI~~P~~~~~~~~~~~~~~~~~~g~~~~~~~  248 (784)
                         ..++..|+..+.++++.|+||+|++|+ +.||++.+++..++++|+|+.||.+..+.           ++       
T Consensus       152 ---~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~-------  210 (875)
T KOG2039|consen  152 ---ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG-------  210 (875)
T ss_pred             ---ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC-------
Confidence               356788999988999999999999999 68888888888899999999999987532           11       


Q ss_pred             ccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEEEEEEecCCCchhHHHHHHHhcCc
Q 003943          249 VAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGL  328 (784)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~la~V~~~~g~~~~Dl~~eLL~~Gl  328 (784)
                                        .+...+||+.+|+.|.+.++++|.|.|.+.+...+-.++|+|++++|+    +++.|+.+|+
T Consensus       211 ------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~  268 (875)
T KOG2039|consen  211 ------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGL  268 (875)
T ss_pred             ------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccch
Confidence                              012458999999999999999999999999988877799999999984    9999999999


Q ss_pred             eEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccccCCCCCCccccccceeeEEEEEEEeCCEEEEEeCCCCCCCCcc
Q 003943          329 AKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALA  407 (784)
Q Consensus       329 A~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-Wk~~~~~~~~~~~~~~k~~~g~V~~V~sGDti~v~~~~~~~~~~~~  407 (784)
                      +++.+|+...++......++.+|..++..+..+ |+++..+....+++..+.+.+.|++++.+|++.+....   |.   
T Consensus       269 ~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~---  342 (875)
T KOG2039|consen  269 AKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS---  342 (875)
T ss_pred             HHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---
Confidence            999999999887777677999999999999999 99999998888777778899999999999999999865   22   


Q ss_pred             eeEEEeecccCCCCCCCCCCCh--hhhhHHHHHHHHHhhcCCCEEEEEEeeeeeccccccccccCCCCCCCCCCCCCccc
Q 003943          408 ERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG  485 (784)
Q Consensus       408 e~~i~L~~i~~P~~~~~~~~~~--~~~~~~eare~lR~~ligk~v~v~vdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (784)
                      +.++.+++|+.|+.+.+.+..+  .-|+..+|++|+|+++||++|.+.++|.++..                ..      
T Consensus       343 ~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~------  400 (875)
T KOG2039|consen  343 ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN------  400 (875)
T ss_pred             ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc----------------cc------
Confidence            7889999999999444332223  47999999999999999999999999987631                00      


Q ss_pred             cccccCCCCCccccccccceeceeeEEecCCCCCCCCCchhhhhcccCCCCCCcchHHHHHhccceeEEecCC-ccccch
Q 003943          486 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD-FEERSN  564 (784)
Q Consensus       486 ~~~~k~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~g~ni~~~Lv~~Gla~v~~~r~-~~~rs~  564 (784)
                           +|             -..|.+++.                      .|.|+++.++.+|++.+.+|++ ++.+++
T Consensus       401 -----~~-------------~~~c~~~~~----------------------~~~~~a~~~~~kg~~~~v~~~~~~~~~s~  440 (875)
T KOG2039|consen  401 -----VP-------------TKVCALPLG----------------------GGKNVAELLVKKGLATVVRKRQDDEQRSS  440 (875)
T ss_pred             -----cc-------------cccccccCC----------------------CcceeeEEEecccchhhhhhHhhhhhhcc
Confidence                 00             022334431                      3689999999999999999994 577799


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCCCCCccceeeccccchhhhhhhchhhhcCCcccEEEEEEecCCEEEEEecCCcceEEE
Q 003943          565 YYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAF  644 (784)
Q Consensus       565 ~~~~L~~aE~~A~~~~~G~w~~~~~~~~~~~d~~~~~~~~ak~~l~~l~~~~~~~a~V~~V~DGdTl~v~~~~~~~~i~v  644 (784)
                      .||.|+.+|..|...++|||+.+..+.+.+.+++..-..++..|++++++...++++|+.+++|..++++++.+.+.+++
T Consensus       441 ~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~  520 (875)
T KOG2039|consen  441 HYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQF  520 (875)
T ss_pred             hhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEE
Confidence            99999999999999999999998776778899876434445599999999999999999999999999999999999999


Q ss_pred             EEeeecCCC-------CCchhHHHHHHHHHHHHcCCceeEEEeeecCCCcEEEEEEeC-CcchHHHHHHhCCeEEeeecC
Q 003943          645 SFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFG  716 (784)
Q Consensus       645 rL~GIdaPe-------~~qpfg~eAk~~l~~~ll~r~V~v~~~~~DkyGr~lg~v~~~-~~di~~~Lv~~GlA~v~~~~~  716 (784)
                      -+.|++||+       .++||+.+|..|...+++++++++.++.+|+.|+++|..|.+ +.++...++++||++.+  |.
T Consensus       521 ~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~  598 (875)
T KOG2039|consen  521 ALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FA  598 (875)
T ss_pred             eeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hh
Confidence            999999997       488999999999999999999999999999999999999998 88999999999999997  76


Q ss_pred             CCCCCChHHHHHHHHHHH-HcccCCCCCCCCCccccCcc--cccccceeEeEEEEEEecc
Q 003943          717 SDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSNGA--AVEGKQKEVLKVILILLHH  773 (784)
Q Consensus       717 ~~~~~~~~~l~~aE~~Ak-~~k~GlW~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~  773 (784)
                      .+.......|..+|..|+ ..+.++|.++.+...+....  ........+..+++++|..
T Consensus       599 ~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p  658 (875)
T KOG2039|consen  599 AERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITP  658 (875)
T ss_pred             hhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecC
Confidence            666666678999999999 99999999998874432221  1124667889999999887

>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query784
3bdl_A 570 Crystal Structure Of A Truncated Human Tudor-Sn Len 2e-39
4j1m_A143 Crystal Structure Of Staphylococcal Nuclease Varian 3e-04
4iun_A143 Crystal Structure Of Staphylococcal Nuclease Varian 3e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3mhb_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3sk8_A143 Crystal Structure Of Staphylococcal Nuclease Varian 9e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 133/220 (60%), Gaps = 14/220 (6%)
Query: 538 GVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQD 596
           G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + D
Sbjct: 129 GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVAD 188
Query: 597 LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GR 654
           ++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   R
Sbjct: 189 IS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGAR 247
Query: 655 N--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEA 706
           N        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E 
Sbjct: 248 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH 307
Query: 707 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746
            L+K+   F ++R      L  AE++AK +K K+W +Y E
Sbjct: 308 ALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEE 345
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3SK8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs M98g Apo Protein At Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query784
3bdl_A 570 Staphylococcal nuclease domain-containing protein 4e-73
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-42
3bdl_A570 Staphylococcal nuclease domain-containing protein 1e-20
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-11
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 5e-10
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 1e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 4e-09
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 1e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 3e-05
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 1e-08
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  248 bits (633), Expect = 4e-73
 Identities = 135/402 (33%), Positives = 201/402 (50%), Gaps = 88/402 (21%)

Query: 362 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 421
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 422 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 473
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 474 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 533
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 534 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 592
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 593 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 652
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 653 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 702
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 703 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY 744
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHY 343
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query784
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
3bdl_A 570 Staphylococcal nuclease domain-containing protein 100.0
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.96
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 99.95
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.62
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 99.55
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.39
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 99.3
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 96.32
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 96.23
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 96.22
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 95.87
2diq_A110 Tudor and KH domain-containing protein; tudor doma 92.71
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 92.62
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 90.84
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 82.79
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-63  Score=581.60  Aligned_cols=503  Identities=27%  Similarity=0.329  Sum_probs=371.3

Q ss_pred             CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCC----------CCChhHHHHHHHHHhhcC
Q 003943            7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI   76 (784)
Q Consensus         7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~----------~~ep~a~eAre~Lr~ll~   76 (784)
                      +....+.|+|++|+|||||+|...+    |  ++++|||+||||||+.++++          .++|||++||+|||++|+
T Consensus        20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~   93 (570)
T 3bdl_A           20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI   93 (570)
T ss_dssp             -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred             cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence            3567889999999999999998642    3  57899999999999965432          479999999999999999


Q ss_pred             CCeEEEEEcc---------ccCCCC-ceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCC
Q 003943           77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL  146 (784)
Q Consensus        77 Gk~V~v~~~~---------~~d~yg-R~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~  146 (784)
                      ||+|+|.+++         .+|+|| |.+|+||++|.|||++||++|||+++++.....+++.++++|.+||++||++++
T Consensus        94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~  173 (570)
T 3bdl_A           94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK  173 (570)
T ss_dssp             TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence            9999999997         468999 999999999999999999999999987531112356678999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCchhhHHHHHhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCC
Q 003943          147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA  225 (784)
Q Consensus       147 GiWs~~~~~~~~~~r~i~~s~~~~~~~~~~~~~~~~-~~~~~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~GI~~P~~~  225 (784)
                      |||+.++.++. .++++.++      ..++++|++. +++++++|+|++|+|||||+|+++++++.++|||+||||||+.
T Consensus       174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~  246 (570)
T 3bdl_A          174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA  246 (570)
T ss_dssp             GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred             CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence            99998654322 24565543      4688999984 5799999999999999999999988899999999999999986


Q ss_pred             CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEE
Q 003943          226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI  305 (784)
Q Consensus       226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~l  305 (784)
                      +..           .+                    +     ..+.+|||.||++|++++|++|+|+|.+.+.|+|||++
T Consensus       247 ~~~-----------~~--------------------~-----~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l  290 (570)
T 3bdl_A          247 RNL-----------PG--------------------L-----VQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI  290 (570)
T ss_dssp             EEE-----------TT--------------------E-----EECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred             CCC-----------CC--------------------C-----ccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence            521           00                    0     12478999999999999999999999999999999999


Q ss_pred             EEEEecCCCchhHHHHHHHhcCceEEEecccccchHHHHHHHHHHHHHHHHhccccccccCCCCCC-------ccccccc
Q 003943          306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSN-------SKAIHDQ  378 (784)
Q Consensus       306 a~V~~~~g~~~~Dl~~eLL~~GlA~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiWk~~~~~~~~-------~~~~~~k  378 (784)
                      |+||++ |.   ||+++||++|||+++ +......  +...|++||++||++++|||+.+.++...       .......
T Consensus       291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~  363 (570)
T 3bdl_A          291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS  363 (570)
T ss_dssp             EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred             EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcc--hHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence            999996 44   499999999999998 3322222  23589999999999999999998775211       0112245


Q ss_pred             eeeEEEEEEEeCCEEEEEeCCCCCCCCcceeEE----EeecccCCC--CCCCCCCChhhhhHHHHHHHHHhhcCC----C
Q 003943          379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRV----NLSSIRCPK--IGNPRKDEKPAAYAREAREFLRTRLIG----R  448 (784)
Q Consensus       379 ~~~g~V~~V~sGDti~v~~~~~~~~~~~~e~~i----~L~~i~~P~--~~~~~~~~~~~~~~~eare~lR~~lig----k  448 (784)
                      .+.+.|+.|.+...|+|+..+...  ..++..-    .+++. +|.  ...|+.|..|.+... +..|+|.+++.    .
T Consensus       364 ~~~V~Vt~V~sp~~Fyvq~~~~~~--~l~~l~~~l~~~~~~~-~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v~~~~  439 (570)
T 3bdl_A          364 YKPVFVTEITDDLHFYVQDVETGT--QLEKLMENMRNDIASH-PPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPA  439 (570)
T ss_dssp             CEEEEEEEECTTSEEEEEEGGGHH--HHHHHHHHHHHHHHHS-CCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEEEETT
T ss_pred             EEEEEEEEEECCCeEEEEECCcHH--HHHHHHHHHHHHHhcC-CCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEEEcCCC
Confidence            678999999999999999854210  0000000    11111 121  124566777776555 78899999974    4


Q ss_pred             EEEE-EEeeeeeccccccccccCCCCCCCC--CCCCCccccccccCCCCCcccc----ccccc---eeceeeEEecCCCC
Q 003943          449 QVNV-QMEYSRKVVVEAAPVAAGAKGPAGT--KGPAGTKGQAAAKGPAGEESVG----ATETR---IIDFGSIFLLSPIK  518 (784)
Q Consensus       449 ~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~p~~~~~~~----~~~~~---~~~~~~v~l~~~~~  518 (784)
                      .+.| +|||++...+..+.++|+++.|...  +.++-.|.|+.++.|...+-..    -+.+.   ..-.+.|.--    
T Consensus       440 ~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~lv~~k~l~~~V~~~----  515 (570)
T 3bdl_A          440 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHL----  515 (570)
T ss_dssp             EEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHHHTTEEEEEEEEEC----
T ss_pred             eEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHHhCCCEEEEEEEEE----
Confidence            5544 6999999999999999999999976  9999999999999887322111    11110   0112222211    


Q ss_pred             CCCCCchhhhhcccCCCCCCcchHHHHHhccceeEEecCCccccchhHHHHHHHHHHHHHc
Q 003943          519 GEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAG  579 (784)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~g~ni~~~Lv~~Gla~v~~~r~~~~rs~~~~~L~~aE~~A~~~  579 (784)
                       . +++..+++..   ..++.+||+.||++|||.+.+.+ ...-...+++|+++|+.||++
T Consensus       516 -~-~~~~~V~L~~---~~~~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~~  570 (570)
T 3bdl_A          516 -S-AGCPHVTLQF---ADSKGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKSA  570 (570)
T ss_dssp             -C-SSSCEEEEEE---TTTCCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC---
T ss_pred             -e-CCcEEEEEEE---CCCCccHHHHHHHCCCeEcchhh-hhhHHHHHHHHHHHHHHHhcC
Confidence             0 1122222221   12468999999999999975332 111256889999999999863
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 784
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 8e-12
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 5e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 3e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.003
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 61.1 bits (147), Expect = 8e-12
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 13/142 (9%)

Query: 12  YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFL 71
             A +     GD++ +           +  T  L  + TP         E +  ++  F 
Sbjct: 5   EPATLIKAIDGDTVKLM-------YKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFT 57

Query: 72  RKLCIGKEVTFRVDYAVPNIGREFG---TVILGDKNVAMLVVSEGWAKVKEQGSQKGEAS 128
           +K+    +             +       +    K V   +V +G AKV          +
Sbjct: 58  KKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPN---N 114

Query: 129 PFLAELLRLEEQAKLQGLGRWS 150
                L + E QAK + L  WS
Sbjct: 115 THEQLLRKSEAQAKKEKLNIWS 136
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query784
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.95
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.93
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 81.98
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=1.1e-27  Score=225.87  Aligned_cols=130  Identities=22%  Similarity=0.226  Sum_probs=115.2

Q ss_pred             eEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcC-CCeEEEEEccc--
Q 003943           11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRVDYA--   87 (784)
Q Consensus        11 ~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~Lr~ll~-Gk~V~v~~~~~--   87 (784)
                      ...++|++|+|||||.|...+       ...+|||+||||||+.++....+|||++|++||+++|. |+.|.+.++..  
T Consensus         4 ~~~a~V~~V~DGDT~~v~~~~-------~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~   76 (136)
T d1snoa_           4 KEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQR   76 (136)
T ss_dssp             EEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCS
T ss_pred             ccceEEEEEEcCCEEEEEeCC-------cEEEEEEEEEcccccccCCcchhhhHHHHHHHHHHHhhcCceeEEEEecccc
Confidence            346899999999999999763       56899999999999988777789999999999999996 79999987643  


Q ss_pred             cCCCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003943           88 VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS  150 (784)
Q Consensus        88 ~d~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs  150 (784)
                      .|+|||.+|+||++|.|||++||++|||+++..+.   .+..+.+.|..||++|+++++||||
T Consensus        77 ~D~~gR~la~v~~~g~~l~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          77 TDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---PNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             BCTTSCEEEEEEETTEEHHHHHHHTTSCEECCCBT---TBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             CCccccceeEEEEecchhHHHHHHCCCEEEeeecC---CChhHHHHHHHHHHHHHHcCCCCCC
Confidence            58899999999999999999999999999987664   3345778899999999999999997
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure