Citrus Sinensis ID: 003960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780---
MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEccccccccHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEcccccEEEEccccEEEcccccccccccEEEEEEc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccHcccEEEEcccHHHHHHHHHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEcccHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHcccEEEEEEEEEcccccccccccEEEEEEcccccHcHHHHHHHHccHHHcccccccccHHHHHccccccEEEEEccccEEEEEEEEEcccccccEEEEcccccHccccccEccccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEccccEEEccHHHHHcccEEEEEEEc
mlepreadvPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRveavpsvsvsplvptsinefhvstsknefnvptlknefpastskngfqlcarcfapattrcsrcksvrycsgkcqiiHWRQVHKQECQQlektsssspslagsvddsvNESLNLQLSgynnkqggmgeappdgvihpsmsrcasssmdcstlensqtsmmerTVDKRVYRKSKKDLLRRDVATMFDSHDEIlrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsngyrsrhwniseprnscesssssnsakygtytreneldftsNGKKFLNESIELNgycemkamnpmgtkncksaksctkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvVSKMGIMKMMGlrkstklrqdsseLWHDQHRKLKMLFPYEEFLKLFQYEVIDllsprgllncgnscyaNAVLQCLTCTKPLVIYLLRrshssaccgkdwclMCELEQHVMMLResagplspgrilsHMRSiscqigdgsqEDAHEFLRLLVASMQSIClerhggeskvdprlqeTTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALtqftspedldgenmykcarcATYVRARKQLSIHEAPNILTIVLKRFqegrygkinkcitfpemldmmpfmtgtgdtpplYMLYSVVVHLdtqnasfsGHYVSYIKDMqgtwfriddtqvhpvpmsqvmseGAYMLFYMR
mlepreadvpVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLensqtsmmertvdkrvyrkskkdllrrdvatmfdshdeilrsctsdpissnnfsskeapirhksrtgasavsseesqrnlnlnssdgcaygqgttgsttydsnGYRSRHWNiseprnscesssssnsaKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTkvvgdqsclekerkgpiadeskaarvrdtipaqgsnvvskmGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERhggeskvdprLQETTFiqhtfggrlwskVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFtspedldgenMYKCARCATYVRARKqlsiheapniLTIVlkrfqegrygkINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
MLEPREADvpvlflvlvvlplvayvllGKWSEAAKKRERISllaqlaaeealRVEAvpsvsvsplvptsINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIseprnscesssssnsAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHV********V************KNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHK**********************************************************************************************************************************************************************************************************************KFLNESIELNGYCEMK******************************************************************************LWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRE********RILSHMRSISCQIGD***EDAHEFLRLLVASMQSICLERHGGE*KVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFY**
***PREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEF*******************LCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHK************************************************************************************************************************************************************************************************************************************************************************************************************************************EFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS**********CLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQS*******************TFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
********VPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ********************DSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMS***************QTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSN******************************LNSSDGCAYGQGTTGSTTYDSNGYRSRHWNIS****************YGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
*****EADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSIN**H***********************NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQ**********************************************************************************************************************************************************************************************************************************************************************************************************************RKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSVSVSPLVPTSINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSLAGSVDDSVNESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSMMERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCESSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query783 2.2.26 [Sep-21-2011]
Q9FPS9 924 Ubiquitin carboxyl-termin yes no 0.902 0.765 0.548 0.0
Q67XW5 631 Ubiquitin carboxyl-termin no no 0.418 0.519 0.537 1e-106
Q9SJA1 672 Ubiquitin carboxyl-termin no no 0.508 0.592 0.462 1e-105
Q9FKP5731 Ubiquitin carboxyl-termin no no 0.412 0.441 0.531 2e-95
Q9SB51 1008 Ubiquitin carboxyl-termin no no 0.604 0.469 0.378 9e-95
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.407 0.240 0.419 5e-70
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.407 0.239 0.419 9e-70
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.407 0.240 0.419 9e-70
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.407 0.240 0.419 1e-69
D6R9N7 530 Ubiquitin carboxyl-termin no no 0.375 0.554 0.386 3e-62
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function desciption
 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/819 (54%), Positives = 537/819 (65%), Gaps = 112/819 (13%)

Query: 1   MLEPREADVPVLFLVLVVLPLVAYVLLGKWSEAAKKRERISLLAQLAAEEALRVEAVPSV 60
           MLEPR AD+P+LFLVLVVLP+VAY+LLGKWS  ++KR R +LLAQ+AAEEALR E V + 
Sbjct: 1   MLEPRGADIPILFLVLVVLPVVAYILLGKWSNISEKRVRANLLAQMAAEEALRAETVVNA 60

Query: 61  ---------------------SVSPLVPTSINEFH------VSTSKNEFNVPTLKNEFPA 93
                                +VS        EF       V+  +++    T      A
Sbjct: 61  DRGVRFESVATENRAQRTRTKTVSAGGGAVRAEFDAGARETVAEQRSDSVTATCGVTVVA 120

Query: 94  STSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPSL 153
             + N   +CARCF PA TRCSRCKSVRYCSGKCQIIHWR  HK EC  +E  SSSS  +
Sbjct: 121 PVNNNELHVCARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSERV 180

Query: 154 AGSVDDSV-NESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLENSQTSM 212
           +   D  + +  ++  +   N  Q   G+     V   S+     S  D +   N+Q   
Sbjct: 181 SFEKDSVLYDHGMDSTMYSNNTTQAAKGKTSKSSVDFASL---GISQNDITPQINTQG-- 235

Query: 213 MERTVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPIRHKSRTG 272
             ++V K+   K+ ++  RRD AT+FDS DE          +S    +K + I+HKSR  
Sbjct: 236 -RKSVGKQHSSKANRESCRRDSATVFDSSDEA---------ASAGGDNKTSHIKHKSR-- 283

Query: 273 ASAVSSEESQRNLNLNSS----DGCAYGQGTTGSTTYDSN-GYRSRHW--NISEPRNSCE 325
            ++ ++E + R  +++SS    +G ++  G   S  +++N G RS     N   P N   
Sbjct: 284 GNSYAAETNPRRHSVDSSAVQMNGQSFVSGMQESHKHENNLGVRSSFGCPNTQYPSN--- 340

Query: 326 SSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELNGYCEMKAMNPMGTKNCKSAKSCTK 385
                                                          GT+     ++   
Sbjct: 341 -----------------------------------------------GTRTATLPRTGIN 353

Query: 386 VVGDQSCLEKERKGPIADESKAARVRDT-IPAQGSNVVSKMGIMKMMGLRKSTKLRQDSS 444
             G+QSC E  +KG +A  SK  R +DT I  + + + S MGIMKMMGLR STK      
Sbjct: 354 KSGEQSCTETSKKGQVAAVSKTVRSKDTGISEESNGISSTMGIMKMMGLRNSTK------ 407

Query: 445 ELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVI 504
               D+++ LKMLFPYEEFLK FQ EV DL SPRGL+NCGNSCYANAVLQ LTCTKPLV 
Sbjct: 408 --HDDRYKNLKMLFPYEEFLKFFQCEVFDL-SPRGLVNCGNSCYANAVLQSLTCTKPLVA 464

Query: 505 YLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDGSQEDA 564
           YLLRRSHS +C GKDWCLMCELEQHVMMLRES GPLS  RILSHMRSI+CQIGDGSQEDA
Sbjct: 465 YLLRRSHSRSCSGKDWCLMCELEQHVMMLRESGGPLSASRILSHMRSINCQIGDGSQEDA 524

Query: 565 HEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYE 624
           HEFLRLLVASMQSICLER GGE+KVDPRLQETT +QH FGGRL SKVKCLRC HESERYE
Sbjct: 525 HEFLRLLVASMQSICLERLGGETKVDPRLQETTLVQHMFGGRLRSKVKCLRCDHESERYE 584

Query: 625 NIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILT 684
           NIMDLTLEIYGWVESL+DALTQFT PEDLDGENMY+C+RCA YVRARK+LSIHEAPNILT
Sbjct: 585 NIMDLTLEIYGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILT 644

Query: 685 IVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHY 744
           IVLKRFQEGRYGKINKCI+FPEMLDM+PFMT TGD PPLYMLY+V+VHLDT NASFSGHY
Sbjct: 645 IVLKRFQEGRYGKINKCISFPEMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHY 704

Query: 745 VSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
           +SY+KD++G W+RIDD+++HPVPM+QVMSEGAYMLFYMR
Sbjct: 705 ISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMR 743
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2 Back     alignment and function description
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|D6R9N7|U17LI_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 18 OS=Homo sapiens GN=USP17L18 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query783
296086860 894 unnamed protein product [Vitis vinifera] 0.872 0.763 0.605 0.0
356556906 989 PREDICTED: ubiquitin carboxyl-terminal h 0.951 0.753 0.583 0.0
147832982 945 hypothetical protein VITISV_035043 [Viti 0.906 0.751 0.564 0.0
297850108 926 ubiquitin-specific protease 15 [Arabidop 0.910 0.769 0.550 0.0
356546765 990 PREDICTED: ubiquitin carboxyl-terminal h 0.951 0.752 0.577 0.0
18394440 924 ubiquitin carboxyl-terminal hydrolase 15 0.902 0.765 0.548 0.0
334182643 928 ubiquitin carboxyl-terminal hydrolase 15 0.902 0.761 0.545 0.0
357451869 983 Ubiquitin carboxyl-terminal hydrolase [M 0.956 0.761 0.554 0.0
11993475 924 ubiquitin-specific protease 15 [Arabidop 0.902 0.765 0.545 0.0
224116680777 predicted protein [Populus trichocarpa] 0.629 0.634 0.676 0.0
>gi|296086860|emb|CBI33027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/718 (60%), Positives = 528/718 (73%), Gaps = 35/718 (4%)

Query: 93  ASTSKNGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSSSSPS 152
            S+SK+G   CARCF PATTRCSRCKSVRYCSGKCQIIHWRQVHK+ECQQLE  SS +  
Sbjct: 4   VSSSKSGNHECARCFGPATTRCSRCKSVRYCSGKCQIIHWRQVHKEECQQLETHSSITSL 63

Query: 153 LAGSVDDSV------NESLNLQLSGYNNKQGGMGEAPPDGVIHPSMSRCASSSMDCSTLE 206
              ++++SV      N+S+N Q  G   KQ  + +A  + +I+PS S    ++  CS+++
Sbjct: 64  KDAAIEESVHERVSVNDSMNSQFYGSGIKQTVLEKASGN-IINPSFSTGMPATNACSSID 122

Query: 207 NSQTSMMER-TVDKRVYRKSKKDLLRRDVATMFDSHDEILRSCTSDPISSNNFSSKEAPI 265
            S+ +MMER T DK V RKS +++L+++   +  S +E+  S  +   SS++ S KEA  
Sbjct: 123 TSRITMMERRTGDKWVSRKSSREILKKEDVAICGSTEEVSTSSNTSITSSDDISLKEAYT 182

Query: 266 RHKSRTGASAVSSEESQRNLNLNSSDGCAYGQGTTGSTTYDSNGYRSRHWNISEPRNSCE 325
           R K     S VS EE  +  N ++    A+ +G T S+ ++ +  ++++ N+ EPR++  
Sbjct: 183 RQKLGNCDSVVSEEEMYKKYNFSAPT--AFARGHTSSSMHERHKLQNQNGNVFEPRSN-Y 239

Query: 326 SSSSSNSAKYGTYTRENELDFTSNGKKFLNESIELN----------GYCEMK-------A 368
             SSS S K GT   E E D  S G     E I  N          G   +K       A
Sbjct: 240 GISSSCSEKNGTNGCEIERDHISCGGNLHREGITANDETGEPNCSPGITSIKRSGKSKTA 299

Query: 369 MNPMGTKNCKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIP--AQGSNVVSKMG 426
           ++ +GTK  KS K+  K+  +++C E ERKG  A+   A R+ D+ P  A G+N V+ MG
Sbjct: 300 LHTLGTKTTKSPKASMKLSREETCSEIERKGQTAE---ATRMSDSTPILAPGNNEVTSMG 356

Query: 427 IMKMMGLRKSTKL-RQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGN 485
            MKMMGLRK  K  +QD+SE   D H+K+KMLFPYEEF++ FQ EV ++ SPRGLLNCGN
Sbjct: 357 FMKMMGLRKPLKPPKQDASEESSDIHKKIKMLFPYEEFVRFFQCEVFNI-SPRGLLNCGN 415

Query: 486 SCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRI 545
           SCYANAVLQCLTCTKPL+IYLL+RSHS  CC  +WCLMCELE+HVMMLRES GPLSP RI
Sbjct: 416 SCYANAVLQCLTCTKPLIIYLLQRSHSRTCCVTNWCLMCELEKHVMMLRESGGPLSPSRI 475

Query: 546 LSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGG 605
           LSHMRSI+CQIGDGSQEDAHEFLRLLV SMQSICLE+ GGE +VD RLQETTFIQHTFGG
Sbjct: 476 LSHMRSINCQIGDGSQEDAHEFLRLLVTSMQSICLEKLGGEREVDARLQETTFIQHTFGG 535

Query: 606 RLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCA 665
           RL SKVKCLRC  ESERYENIMDLTLEI+GWVESLEDALTQFT+PEDLDGENMY+C RC 
Sbjct: 536 RLRSKVKCLRCHLESERYENIMDLTLEIFGWVESLEDALTQFTTPEDLDGENMYRCRRCT 595

Query: 666 TYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYM 725
           TYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFP+MLDM+PFMTGT D PPLYM
Sbjct: 596 TYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPDMLDMIPFMTGTYDVPPLYM 655

Query: 726 LYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
           LY+VVVH+DT NASFSGHYV+Y+KD+QG WFR+DD +V PV  +QVMSEGAY+LFYMR
Sbjct: 656 LYAVVVHMDTLNASFSGHYVAYVKDLQGNWFRVDDAEVQPVSTNQVMSEGAYILFYMR 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356556906|ref|XP_003546761.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|147832982|emb|CAN68406.1| hypothetical protein VITISV_035043 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297850108|ref|XP_002892935.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] gi|297338777|gb|EFH69194.1| ubiquitin-specific protease 15 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356546765|ref|XP_003541793.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|18394440|ref|NP_564014.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|166201354|sp|Q9FPS9.2|UBP15_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15; AltName: Full=Deubiquitinating enzyme 15; Short=AtUBP15; AltName: Full=Ubiquitin thioesterase 15; AltName: Full=Ubiquitin-specific-processing protease 15 gi|332191421|gb|AEE29542.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182643|ref|NP_001185019.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] gi|332191422|gb|AEE29543.1| ubiquitin carboxyl-terminal hydrolase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357451869|ref|XP_003596211.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355485259|gb|AES66462.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|11993475|gb|AAG42756.1|AF302665_1 ubiquitin-specific protease 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224116680|ref|XP_002317364.1| predicted protein [Populus trichocarpa] gi|222860429|gb|EEE97976.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query783
TAIR|locus:2046678 672 UBP19 "AT2G24640" [Arabidopsis 0.512 0.596 0.463 1e-109
TAIR|locus:2124809 631 UBP18 "AT4G31670" [Arabidopsis 0.418 0.519 0.537 1.3e-107
TAIR|locus:2121959 1008 UBP16 "ubiquitin-specific prot 0.503 0.390 0.435 2.1e-107
TAIR|locus:2168282731 UBP17 "AT5G65450" [Arabidopsis 0.453 0.485 0.501 1.2e-104
UNIPROTKB|E2RHU7 1331 USP42 "Ubiquitin carboxyl-term 0.407 0.239 0.419 9.7e-66
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.407 0.239 0.419 9.7e-66
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.407 0.240 0.419 1.2e-65
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.407 0.240 0.419 1.5e-65
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.407 0.240 0.419 2e-65
DICTYBASE|DDB_G0274827 919 DDB_G0274827 "putative ubiquit 0.412 0.351 0.406 1.5e-63
TAIR|locus:2046678 UBP19 "AT2G24640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 969 (346.2 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
 Identities = 189/408 (46%), Positives = 259/408 (63%)

Query:   377 CKSAKSCTKVVGDQSCLEKERKGPIADESKAARVRDTIPAQGSNVVSKMGIMKMMGLRKS 436
             CKS + C+      +C   + K     + K  R  D+ P +  ++  +  +       K 
Sbjct:    78 CKSVRYCSA-----ACQTSDWKSGHKLKCKGFRSTDSSPVRRDDIDFEASLFGNRSASKK 132

Query:   437 TKLRQDSSELWHDQHRK-LKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQC 495
             T++     +       K   +LFPYE F++ + ++   +++P GL NCGNSC+AN VLQC
Sbjct:   133 TRIALVPQQSQSKATLKPTDVLFPYESFVRYYNWDR-PIMAPCGLTNCGNSCFANVVLQC 191

Query:   496 LTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQ 555
             L+ T+PLV YLL R H   C   DWC +CE E H+     S  P SP  I+S + +I   
Sbjct:   192 LSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANYSRFPFSPMNIISRLPNIGGN 251

Query:   556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR 615
             +G G QEDAHE +R  +  MQS+CL+  GGE  V PR QETT IQ+ FGG L S+V+C  
Sbjct:   252 LGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQETTLIQYIFGGLLQSQVQCTA 311

Query:   616 CSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLS 675
             CS+ S++YEN+MDLT+EI+G   SLE+ L QFT+ E L G+N+YKC RC  YV+A K+LS
Sbjct:   312 CSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLS 371

Query:   676 IHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDT 735
             I  APNILTI LKRFQ GR+GK+NK I+FPE  D+ P+M+G G+   +Y LY+V+VHLD 
Sbjct:   372 IRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMSGGGEGSDVYKLYAVIVHLDM 431

Query:   736 QNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
              NASF GHY+ Y+KD +G W+RIDD++V  V +  V+S+ AYML Y R
Sbjct:   432 LNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSR 479
GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2124809 UBP18 "AT4G31670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121959 UBP16 "ubiquitin-specific protease 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168282 UBP17 "AT5G65450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHU7 USP42 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274827 DDB_G0274827 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS9UBP15_ARATH3, ., 4, ., 1, 9, ., 1, 20.54820.90290.7651yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-163
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-64
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 2e-63
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-59
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-52
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 5e-51
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 2e-50
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 3e-37
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-34
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 6e-33
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 7e-31
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 8e-27
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-25
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 2e-24
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 2e-22
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 2e-21
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-18
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 2e-16
pfam0175339 pfam01753, zf-MYND, MYND finger 5e-11
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 1e-07
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 1e-07
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 1e-06
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 2e-04
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 4e-04
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 0.004
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  473 bits (1219), Expect = e-163
 Identities = 161/307 (52%), Positives = 200/307 (65%), Gaps = 4/307 (1%)

Query: 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES 536
             GL N GN+C+ N+VLQCLT T PL  YLL R HS  CC + +C+MC LE HV     S
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 537 AGPLS-PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQE 595
           +GP S P    S+++ IS     G QEDAHEFLR L+ +MQ  CL+R      VDP  QE
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 596 TTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDG 655
           TT +Q  FGG L S+VKCL C H S  Y+  +DL+L+I G  +SLEDAL QFT PE LDG
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA-DSLEDALEQFTKPEQLDG 179

Query: 656 ENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMMPFMT 715
           EN YKC RC   V+A KQL+IH APN+LTI LKRF   R GKINK I+FPE LD+ P+M+
Sbjct: 180 ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239

Query: 716 GTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQVMSEG 775
              D P  Y LY+V+VH        SGHY  Y+K   G W+ +DD++V PV +  V+S+ 
Sbjct: 240 QPNDGPLKYKLYAVLVHSGFSP--HSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQK 297

Query: 776 AYMLFYM 782
           AY+LFY+
Sbjct: 298 AYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 783
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.97
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.93
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.91
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.8
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.86
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 98.85
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 98.44
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.8
KOG2061362 consensus Uncharacterized MYND Zn-finger protein [ 96.55
KOG3612588 consensus PHD Zn-finger protein [General function 96.42
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 96.25
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 93.89
PF08715320 Viral_protease: Papain like viral protease; InterP 93.85
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 93.66
PLN03158396 methionine aminopeptidase; Provisional 92.32
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 90.3
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 86.0
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-66  Score=571.27  Aligned_cols=323  Identities=49%  Similarity=0.899  Sum_probs=304.9

Q ss_pred             cCceeecchhhhhhccccccccCcCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHH
Q 003960          452 RKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVM  531 (783)
Q Consensus       452 ~~~~~~~~~e~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~  531 (783)
                      .+.+.+|++|.+.  +...++. ..+.||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++.
T Consensus        86 ~p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~  162 (545)
T KOG1865|consen   86 PPAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHIT  162 (545)
T ss_pred             Ccchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHH
Confidence            4448999999987  3333344 567999999999999999999999999999999999999999899999999999998


Q ss_pred             HHHhCCC-CCChHHHHHHHHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEE
Q 003960          532 MLRESAG-PLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSK  610 (783)
Q Consensus       532 ~L~s~~~-~isP~~fl~~l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~  610 (783)
                      ......+ +|+|..|+..|..+..+|..|+|+||||||++++|.|+..++   ++....++..++.++|+++|+|.++++
T Consensus       163 ~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~  239 (545)
T KOG1865|consen  163 RALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQ  239 (545)
T ss_pred             HHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhc
Confidence            7666555 999999999999999999999999999999999999999987   567788899999999999999999999


Q ss_pred             EEecCCCCccceeeeeeeeeeccccccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEee
Q 003960          611 VKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRF  690 (783)
Q Consensus       611 i~C~~C~~~s~~~e~f~~LsL~I~~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF  690 (783)
                      ++|..|.+++.++|+.++|+|+|. ++.+|+++|++|+.+|.++|+|+|.|++|++++.|.|+++|.++|+||+|+|+||
T Consensus       240 vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF  318 (545)
T KOG1865|consen  240 IKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRF  318 (545)
T ss_pred             eecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehh
Confidence            999999999999999999999999 7899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccccceEEecCCccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEcCCeeeeeCCCc
Q 003960          691 QEGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDMQGTWFRIDDTQVHPVPMSQ  770 (783)
Q Consensus       691 ~~~~~~Ki~~~V~fP~~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~~~~W~~fNDs~Vt~vs~e~  770 (783)
                      +.+...||++.|.||+.|||.|||+.+.+.+..|.|+|||+|.|.  +.++|||+||||..+|.||.|||+.|+.++++.
T Consensus       319 ~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~--~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~  396 (545)
T KOG1865|consen  319 SNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGT--SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES  396 (545)
T ss_pred             ccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccc--cccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence            999899999999999999999999988888999999999999999  899999999999999999999999999999999


Q ss_pred             cCCCCcEEEEEEC
Q 003960          771 VMSEGAYMLFYMR  783 (783)
Q Consensus       771 v~~~~aYILfY~R  783 (783)
                      |+++.||||||.|
T Consensus       397 VLsq~AYmLfY~R  409 (545)
T KOG1865|consen  397 VLSQQAYILFYAR  409 (545)
T ss_pred             eecccceEEEEEe
Confidence            9999999999987

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3612 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 5e-30
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 2e-29
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 3e-29
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 6e-28
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 6e-28
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 6e-28
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 8e-24
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 9e-24
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-23
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 1e-22
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 2e-22
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 2e-22
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 1e-21
2f1z_A522 Crystal Structure Of Hausp Length = 522 5e-17
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 1e-16
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 8e-16
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 2e-08
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 35/333 (10%)
Query: 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK--DWCLMCELEQHVMML--- 533
           GL+N GN+C+ +++LQCL      + + + + HS+ C  +  D C  C L++ V  L   
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 534 ----RESAGPLSPGRILSHMRSISC------QIGDGSQEDAHEFLRLLVASM-QSICLER 582
               + S+   S  R    +  ++C       +   SQ+DAHEF + ++  + QS  L+ 
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 583 HGGESKVDPRLQETTFIQHT-FGGRLWSKVKCLRCSHESER-YENIMDLTLEIYGWVESL 640
              +       ++   I HT F G L S + C  C + S+   +  +DL+L+I    + L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KKKL 321
Query: 641 EDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRYGK 697
            + L  F   E L   N Y C  C +   A KQL IH+ P++L + LKRF+    G   K
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRK 380
Query: 698 INKCITFPEMLDMMPFMTG--------TGDTPPL-YMLYSVVVHLDTQNASFSGHYVSYI 748
           ++  I FP  L+M  + +          G  P + Y L  +V H  T N    GHY+++ 
Sbjct: 381 LDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIAFC 437
Query: 749 KDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFY 781
           K   G WF+ +D+ V  +   +V+ E AY+LFY
Sbjct: 438 KISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-108
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-108
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 4e-97
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 7e-94
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-87
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 3e-87
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 8e-81
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 1e-72
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-27
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 3e-27
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-10
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 9e-15
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 1e-14
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 2e-14
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 4e-14
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 5e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 4e-05
3qww_A433 SET and MYND domain-containing protein 2; methyltr 7e-05
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  337 bits (866), Expect = e-108
 Identities = 90/337 (26%), Positives = 149/337 (44%), Gaps = 35/337 (10%)

Query: 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCG--KDWCLMCELEQHVMMLR 534
             GL+N G++C+ +++LQCL      + + + + HS+ C     D C  C L++ V  L 
Sbjct: 141 LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELY 200

Query: 535 E-------------SAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLE 581
                         +        +L+    I+  +   SQ+DAHEF + ++  +    + 
Sbjct: 201 GALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVL 260

Query: 582 RHGGESKVDPRL--QETTFIQHTFGGRLWSKVKCLRCSHESER-YENIMDLTLEIYGWVE 638
                 +V      Q    +   F G L S + C  C + S+   +  +DL+L+I    +
Sbjct: 261 DLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD-KK 319

Query: 639 SLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQE---GRY 695
            L + L  F   E L   N Y C  C +   A KQL IH+ P++L + LKRF+    G  
Sbjct: 320 KLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSN 378

Query: 696 GKINKCITFPEMLDMMPFMTGTGD---------TPPLYMLYSVVVHLDTQNASFSGHYVS 746
            K++  I FP  L+M  + +                +Y L  +V H  T N    GHY++
Sbjct: 379 RKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVN---EGHYIA 435

Query: 747 YIKDMQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
           + K   G WF+ +D+ V  +   +V+ E AY+LFY  
Sbjct: 436 FCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTI 472
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query783
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.94
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 99.07
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.95
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.93
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 98.93
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.86
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.08
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.05
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.88
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.81
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 95.27
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 95.2
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 88.45
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.8e-58  Score=510.64  Aligned_cols=306  Identities=28%  Similarity=0.472  Sum_probs=265.7

Q ss_pred             cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCccc-----CCCCchHHHHHHHHHHHHHhCC-CCCChHHHHHH
Q 003960          475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH  548 (783)
Q Consensus       475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~-----~~~~~~l~~qL~~L~~~L~s~~-~~isP~~fl~~  548 (783)
                      +|++||.|+|||||||||||+|+++|+|+++|+...+....     .....++.++|+.|+..|+.+. ..++|..|+..
T Consensus         6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~   85 (367)
T 2y6e_A            6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ   85 (367)
T ss_dssp             TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred             CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence            78999999999999999999999999999999875443221     1234579999999999999754 57999999999


Q ss_pred             HHhcccccCCCccccHHHHHHHHHHHHHHHHhhhcCCCC--CCC----C------------ccccccccccccceEEEEE
Q 003960          549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KVD----P------------RLQETTFIQHTFGGRLWSK  610 (783)
Q Consensus       549 l~~~~~~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~--~~~----~------------~~~~~siI~~lF~g~l~~~  610 (783)
                      ++...+.|..++||||+|||.+||+.|++++........  ..+    +            .....++|.++|+|++.++
T Consensus        86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~  165 (367)
T 2y6e_A           86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST  165 (367)
T ss_dssp             HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred             HHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeee
Confidence            999999999999999999999999999987643211100  000    0            0123578999999999999


Q ss_pred             EEecCCCCccceeeeeeeeeeccccc------------------cCCHHHHHhhcCCCccCCCCCccccCccCcceeeEE
Q 003960          611 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARCATYVRARK  672 (783)
Q Consensus       611 i~C~~C~~~s~~~e~f~~LsL~I~~~------------------~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k  672 (783)
                      ++|..|++++.+.++|+.|+|+||..                  ..+|++||+.|+.+|.++++++|+|++|++++.+.|
T Consensus       166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K  245 (367)
T 2y6e_A          166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK  245 (367)
T ss_dssp             EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred             EEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEE
Confidence            99999999999999999999999853                  358999999999999999999999999999999999


Q ss_pred             EEeeecCCceEEEEEEeeecCc--ccccceEEecCC-ccCCCccccCCCCCCCcEEEEEEEEEecCCCCCCCCeEEEEEE
Q 003960          673 QLSIHEAPNILTIVLKRFQEGR--YGKINKCITFPE-MLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK  749 (783)
Q Consensus       673 ~~~i~~lP~iLiIqL~RF~~~~--~~Ki~~~V~fP~-~LDL~~~~~~~~~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk  749 (783)
                      +..|.++|+||+|||+||.++.  ..|++..|.||. .|||.+|+.........|+|+|||+|.|.   .++|||+||+|
T Consensus       246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~---~~~GHY~a~~~  322 (367)
T 2y6e_A          246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA---MGVGHYTAYAK  322 (367)
T ss_dssp             EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS---SSSCEEEEEEE
T ss_pred             EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC---CCCCeeeEEEE
Confidence            9999999999999999998754  379999999996 79999999877666789999999999996   45999999999


Q ss_pred             cC-CCCEEEEcCCeeeeeCCCccCCCCcEEEEEEC
Q 003960          750 DM-QGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR  783 (783)
Q Consensus       750 ~~-~~~W~~fNDs~Vt~vs~e~v~~~~aYILfY~R  783 (783)
                      .. +++||+|||+.|+++++++|....||||||+|
T Consensus       323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r  357 (367)
T 2y6e_A          323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR  357 (367)
T ss_dssp             CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEE
T ss_pred             cCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEE
Confidence            86 78999999999999999999999999999987
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 783
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-54
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-50
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 1e-41
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 4e-37
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-29
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 4e-12
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 6e-12
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 9e-12
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  189 bits (479), Expect = 2e-54
 Identities = 85/335 (25%), Positives = 134/335 (40%), Gaps = 32/335 (9%)

Query: 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMM 532
            GL N GN+CY N++LQCL     L  Y  R  +          G    +  E    +  
Sbjct: 16  TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKA 75

Query: 533 LRES-AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP 591
           L       +SP      +  I+ Q    SQ+D+ E L  L+  +     +    +   + 
Sbjct: 76  LWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEE 135

Query: 592 RLQ------------------ETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633
                                  + I   F G+  S V+CL C  +S  +E  M L+L +
Sbjct: 136 NNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPL 195

Query: 634 YG-WVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQ- 691
                 +L+D L  F+  E L   N + C+ C     + K++ I + P +L + LKRF  
Sbjct: 196 ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 692 --EGRYGKINKCITFPEMLDMMPFMTGTGDTPPLYMLYSVVVHLDTQNASFSGHYVSYIK 749
               +           E LD+  ++ G  +    Y L+SV  H    +    GHY +Y K
Sbjct: 256 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLD---GGHYTAYCK 312

Query: 750 D-MQGTWFRIDDTQVHPVPMSQVMSEGAYMLFYMR 783
           +  +  WF+ DD +V  + +S V S  AY+LFY  
Sbjct: 313 NAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query783
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 99.18
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 99.18
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 99.17
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 80.21
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-52  Score=451.22  Aligned_cols=289  Identities=27%  Similarity=0.432  Sum_probs=250.7

Q ss_pred             cCCcccccCCCcccHHHHHHHHhcCHHHHHHHHhcccCcccCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHhccc
Q 003960          475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC  554 (783)
Q Consensus       475 ~~~~GL~NlGNTCYmNSVLQ~L~~ip~fr~~ll~~~~~~~~~~~~~~l~~qL~~L~~~L~s~~~~isP~~fl~~l~~~~~  554 (783)
                      +|++||.|+||||||||+||+|+++|+|+++++.....  ......++.++|+.+|..|+.+..++.|..++..+.  ..
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~--~~   79 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE   79 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT--TCCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTT--CC
T ss_pred             CCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc--CCcccchHHHHHHHHHHHHhcCCCCcChHHHHHhhc--hh
Confidence            88999999999999999999999999999999864433  223456799999999999999888999999887763  34


Q ss_pred             ccCCCccccHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccceEEEEEEEecCCCCccceeeeeeeeeeccc
Q 003960          555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY  634 (783)
Q Consensus       555 ~f~~g~QQDA~EFL~~LLd~L~~e~~~~~~~~~~~~~~~~~~siI~~lF~g~l~~~i~C~~C~~~s~~~e~f~~LsL~I~  634 (783)
                      .|..+.||||+|||..||+.|++++...           ...++|.++|.|.+...++|..|+..+.+.++|+.|+|+++
T Consensus        80 ~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~  148 (347)
T d1nbfa_          80 TLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK  148 (347)
T ss_dssp             GGGGGSCBCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECT
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHhhc-----------cccccccceeceEEEEeEEeCCccceeeeeccccccccccc
Confidence            6788899999999999999999876431           12357899999999999999999999999999999999998


Q ss_pred             cccCCHHHHHhhcCCCccCCCCCccccCccCcceeeEEEEeeecCCceEEEEEEeeecC----cccccceEEecCCccCC
Q 003960          635 GWVESLEDALTQFTSPEDLDGENMYKCARCATYVRARKQLSIHEAPNILTIVLKRFQEG----RYGKINKCITFPEMLDM  710 (783)
Q Consensus       635 ~~~~sLed~L~~~~~~E~l~g~n~y~C~~C~~~~~a~k~~~i~~lP~iLiIqL~RF~~~----~~~Ki~~~V~fP~~LDL  710 (783)
                      . ..++.++|..++.+|.+++++.+.|..| +...+.++..|.++|++|+|||+||.+.    ...|++..|.||+.|||
T Consensus       149 ~-~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl  226 (347)
T d1nbfa_         149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL  226 (347)
T ss_dssp             T-CCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEEC
T ss_pred             c-ccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeecc
Confidence            6 5789999999999999999887777655 5677889999999999999999999742    34699999999999999


Q ss_pred             CccccCCC-CCCCcEEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEcCCeeeeeCCCccCC---------------
Q 003960          711 MPFMTGTG-DTPPLYMLYSVVVHLDTQNASFSGHYVSYIKDM-QGTWFRIDDTQVHPVPMSQVMS---------------  773 (783)
Q Consensus       711 ~~~~~~~~-~~~~~Y~L~gVV~H~G~~~s~~sGHYva~Vk~~-~~~W~~fNDs~Vt~vs~e~v~~---------------  773 (783)
                      .+|+.... .....|+|+|||+|.|.   .++|||+||+|+. +++||+|||+.|+++++++|+.               
T Consensus       227 ~~~~~~~~~~~~~~Y~L~~vI~H~G~---~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~  303 (347)
T d1nbfa_         227 DEFLQKTDPKDPANYILHAVLVHSGD---NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC  303 (347)
T ss_dssp             GGGBSSCCTTSCCEEEEEEEEEEEEE---TTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTT
T ss_pred             ccccccccccCccceeeEEEEEecCC---CCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCC
Confidence            99987544 34578999999999997   3599999999975 6799999999999999998864               


Q ss_pred             CCcEEEEEEC
Q 003960          774 EGAYMLFYMR  783 (783)
Q Consensus       774 ~~aYILfY~R  783 (783)
                      .+||||||+|
T Consensus       304 ~~aYiLfY~r  313 (347)
T d1nbfa_         304 TNAYMLVYIR  313 (347)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            2599999987
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure