Citrus Sinensis ID: 003979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780--
MLPPNITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHcccccccccHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccHHHcccccHHHHHHHHHccccccEEEEEcccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHccccccEEEEccccccccHHHHHcccccccccccHHHHHHHcccccccccEEEEEEEcccccccccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHEEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEccccccHHEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEEcccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccHHHHcccccHHHHHHcHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHcccccEEEEEccccccccHHHcHHcHHHccccccccHHcccccccccEEEEEEEEccccccccccc
mlppnitsiktssdgvwqgdnplnfafPLLIIQTTLVLLTSHCLAVlikplrqpKVIAEILGGillgpsalgrnkeylhlvfpswstpilESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAvhgenkvgyGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLagkgsgaeshhqSSLISIWVLISGVAFVAFMLIVVRPIMDWVArqcssdnvlvDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVfgltipkgGEFAVRLMKKIQDFVSGLLLPLyfassglktdVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTfmttpmrqlpaakdskdeFRIQAcvhgpenvpslIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDrgfgfgsdqtvaepAATVLKRVCIIFfggpddrraldlggrmaenpggnvTLVRFIGQASRAatssiaerptsdistengnsfsrereLDEAAVDDFMrkwggsveYEEKVMANVKDEVlkigqirdyELVVvgkgrfpstieaeladhqpenvglGLIGNilassdhgiFASVLVIQQHNVADINEAIV
mlppnitsiktssdgvwqGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQAcvhgpenvpslikLTELIRTTEKSTLKLYVMRLVEltdrsssilmvqktrkngvPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAatssiaerptsdistengnsfsrereldeaaVDDFMRKWGGSVEYEEKVMANVKDevlkigqirdyeLVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV
MLPPNITSIKTSSDGVWQGDNPLNFAFPlliiqttlvlltSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILEslasvgllfflflvgleldlssIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTamaaaaFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV
**************GVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKG*******QSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQL********EFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRM****GGNVTLVRFIG************************************VDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADI*****
**************GVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRI*******ENVPSLIKLTELIR***KSTLKLYVMRLVELTDRSS**************************QIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFH***************HGWREVNRTVLQNAPCSVAVLVDRGFGF***********TVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQ****************************RELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKG***************ENVGLGLIGNILASSDHGIFASVLVIQQHN*********
MLPPNITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSL*************SLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQA**********RPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV
****NITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKT**************MSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTV****ATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQA*********************NSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNV********
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLPPNITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNDEMFAILVLMALFTTFMTTPMRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFSRERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query782 2.2.26 [Sep-21-2011]
Q9M353842 Cation/H(+) antiporter 20 yes no 0.997 0.926 0.596 0.0
Q9LUN4800 Cation/H(+) antiporter 19 no no 0.941 0.92 0.482 0.0
Q9FFR9810 Cation/H(+) antiporter 18 no no 0.946 0.913 0.476 0.0
Q9SUQ7820 Cation/H(+) antiporter 17 no no 0.945 0.901 0.456 0.0
Q9SIT5821 Cation/H(+) antiporter 15 no no 0.945 0.900 0.446 1e-173
Q1HDT3811 Cation/H(+) antiporter 16 no no 0.947 0.913 0.440 1e-170
Q8VYD4867 Cation/H(+) antiporter 23 no no 0.925 0.835 0.337 1e-105
Q9SKA9832 Cation/H(+) antiporter 21 no no 0.934 0.878 0.320 3e-99
Q9LMJ1829 Cation/H(+) antiporter 14 no no 0.911 0.860 0.282 2e-82
Q9P7I1889 K(+)/H(+) antiporter 1 OS yes no 0.686 0.604 0.317 3e-80
>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1 Back     alignment and function desciption
 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/826 (59%), Positives = 621/826 (75%), Gaps = 46/826 (5%)

Query: 2   LPPNITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEIL 61
           +P NITS+KTSS+GVWQGDNPLNFAFPLLI+QT L++  S  LAVL KPLRQPKVIAEI+
Sbjct: 1   MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

Query: 62  GGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSA 121
           GGILLGPSALGRN  Y+  +FP WS PILES+AS+GLLFFLFLVGLELDLSSIR++GK A
Sbjct: 61  GGILLGPSALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVGLELDLSSIRRSGKRA 120

Query: 122 FKIALAGITLPFLFGAGVSLFLQKAVH-GENKVGYGQFIIFMGVSLSITAFPVLARILAD 180
           F IA+AGITLPF+ G GV+  ++  ++   +K GY +F++FMGV+LSITAFPVLARILA+
Sbjct: 121 FGIAVAGITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVALSITAFPVLARILAE 180

Query: 181 LKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240
           LKLLTTQ+G+TAMAAAAFNDV AWILLALAV+LAG G       +S L+S+WVL+SG  F
Sbjct: 181 LKLLTTQIGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKKSPLVSLWVLLSGAGF 240

Query: 241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFG 300
           V FML+V+RP M WVA++ S +N +V + Y+CLTL GVMVSGF TDLIGIH+IFGAFVFG
Sbjct: 241 VVFMLVVIRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFG 300

Query: 301 LTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACA 360
           LTIPK GEF  RL+++I+DFVSGLLLPLYFA+SGLKTDVAKIRG E+WG+L LV+  ACA
Sbjct: 301 LTIPKDGEFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACA 360

Query: 361 GKILGTFVMALLCMIPVRESLALGVLMNTKGLVELI---------VLNDEMFAILVLMAL 411
           GKI+GTFV+A++  +P RE+L LG LMNTKGLVELI         VLNDE FAILVLMAL
Sbjct: 361 GKIVGTFVVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMAL 420

Query: 412 FTTFMTTP---------------MRQLPAAKDS-KDEFRIQACVHGPENVPSLIKLTELI 455
           FTTF+TTP               ++ L A++DS K+E RI AC+HGP NV SLI L E I
Sbjct: 421 FTTFITTPTVMAIYKPARGTHRKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESI 480

Query: 456 RTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQ 515
           RTT+   LKL+VM L+ELT+RSSSI+MVQ+ RKNG+PF++R+R G  H  ++  FEAY+Q
Sbjct: 481 RTTKILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRHGERHSNVIGGFEAYRQ 540

Query: 516 LRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRRE-----------GEEE 564
           L RV +R  TA+S L TMHEDI H+A+ KRV MI+LPFHK+W  +           G+  
Sbjct: 541 LGRVAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSHHHQDGGGDGN 600

Query: 565 IAR-VCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPD 623
           +   V HGWR VN+ VL+NAPCSVAVLVDRG G    QT++   + V++RVC+IFFGGPD
Sbjct: 601 VPENVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVERVCVIFFGGPD 660

Query: 624 DRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSF-------S 676
           DR +++LGGRMAE+P   VT++RF+ + +  +T ++  RP      E   +F        
Sbjct: 661 DRESIELGGRMAEHPAVKVTVIRFLVRETLRST-AVTLRPAPSKGKEKNYAFLTTNVDPE 719

Query: 677 RERELDEAAVDDFMRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEA 736
           +E+ELDE A++DF  KW   VEY+EK   N+ +E+L IGQ +D++L+VVG+GR PS   A
Sbjct: 720 KEKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSIGQSKDFDLIVVGRGRIPSAEVA 779

Query: 737 ELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHNVADINEAIV 782
            LA+ Q E+  LG IG++LASS + I  S+LV+QQHN A + +  V
Sbjct: 780 ALAERQAEHPELGPIGDVLASSINHIIPSILVVQQHNKAHVEDITV 825
Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1 Back     alignment and function description
>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2 Back     alignment and function description
>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1 Back     alignment and function description
>sp|Q9P7I1|KHA1_SCHPO K(+)/H(+) antiporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kha1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query782
225440302839 PREDICTED: cation/H(+) antiporter 20-lik 0.988 0.921 0.662 0.0
147776948859 hypothetical protein VITISV_023524 [Viti 0.988 0.899 0.647 0.0
297740402858 unnamed protein product [Vitis vinifera] 0.988 0.900 0.647 0.0
255573649847 monovalent cation:proton antiporter, put 0.989 0.913 0.627 0.0
224090288833 cation proton exchanger [Populus trichoc 0.989 0.929 0.627 0.0
225440298826 PREDICTED: cation/H(+) antiporter 20 iso 0.964 0.912 0.644 0.0
359481798832 PREDICTED: cation/H(+) antiporter 20 iso 0.964 0.906 0.639 0.0
255573653798 monovalent cation:proton antiporter, put 0.941 0.922 0.638 0.0
297740403809 unnamed protein product [Vitis vinifera] 0.942 0.911 0.636 0.0
449448910853 PREDICTED: cation/H(+) antiporter 20-lik 0.978 0.896 0.622 0.0
>gi|225440302|ref|XP_002269591.1| PREDICTED: cation/H(+) antiporter 20-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/813 (66%), Positives = 644/813 (79%), Gaps = 40/813 (4%)

Query: 5   NITSIKTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGI 64
           NITSI TSS+GVWQGDNPL+FAFPLLI+QTTL+L  S  LA L+KPLRQPKVIAEI+GGI
Sbjct: 4   NITSISTSSNGVWQGDNPLDFAFPLLIVQTTLILALSRFLAFLLKPLRQPKVIAEIIGGI 63

Query: 65  LLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKI 124
           LLGPSALGRN+ YLH +FPSWSTPILES+AS+GLLFFLFLVGLELDLSSIR++G+ A  I
Sbjct: 64  LLGPSALGRNQNYLHRIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRKALSI 123

Query: 125 ALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLL 184
           A  GITLPF+ G GV+  L+K+V G +K GYG F++FMGV+LSITAFPVLARILA+LKLL
Sbjct: 124 ATVGITLPFVCGVGVAFVLRKSVDGADKAGYGTFLVFMGVALSITAFPVLARILAELKLL 183

Query: 185 TTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFM 244
           TT+VG+TAMAAAAFNDVVAWILLALAV+LAG G G E  H+S LIS+WVL+SGVAFV FM
Sbjct: 184 TTRVGETAMAAAAFNDVVAWILLALAVALAGDGEGGE--HKSPLISVWVLLSGVAFVIFM 241

Query: 245 LIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIP 304
           ++V++P M WVAR+ S D+  VD+ YICLTL GVMVSGF+TDLIGIH+IFGAFVFGLTIP
Sbjct: 242 MVVIKPAMSWVARR-SPDSHSVDEAYICLTLAGVMVSGFVTDLIGIHSIFGAFVFGLTIP 300

Query: 305 KGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKIL 364
           KGG F+ RL+++I+DFV+GLLLPLYFASSGLKT+VAKIRG+EAWGLLVLVI+ ACAGKI+
Sbjct: 301 KGGGFSERLIERIEDFVTGLLLPLYFASSGLKTNVAKIRGLEAWGLLVLVITTACAGKIV 360

Query: 365 GTFVMALLCMIPVRESLALGVLMNTKGLVELI---------VLNDEMFAILVLMALFTTF 415
           GTFV+A++CMIP RESL LGVLMNTKGLVELI         VLNDE+FAILVLMALFTTF
Sbjct: 361 GTFVVAMMCMIPARESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTF 420

Query: 416 MTTP-------------------MRQLPAAKDSKDEFRIQACVHGPENVPSLIKLTELIR 456
           MTTP                   +R   +   SK + RI ACVHGP NVPSLI L E  R
Sbjct: 421 MTTPIVMTIYKPVRGGPARTHRRLRDFSSVDSSKYDLRILACVHGPGNVPSLISLIEATR 480

Query: 457 TTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQL 516
           + +KS LKLYVMRLVELT+RSSSI+MVQ+ RKNG PFINRFR+G S D++  +FEAY QL
Sbjct: 481 SAKKSQLKLYVMRLVELTERSSSIIMVQRARKNGFPFINRFRRGQSDDRVEVAFEAYGQL 540

Query: 517 RRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVN 576
            RV++R +TAIS+LSTMHEDI HVAE KR  M++LPFHKQW+ EG E +  + +GWR VN
Sbjct: 541 GRVSVRPTTAISSLSTMHEDICHVAEEKRATMVILPFHKQWKGEGYESMENMGNGWRGVN 600

Query: 577 RTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAE 636
           + VL+N+PCSVAVLVDRGFG G  QT   P +TV +R+CI+FFGGPDDR AL+LG RMAE
Sbjct: 601 QRVLKNSPCSVAVLVDRGFGSGPQQTRG-PTSTVTQRICILFFGGPDDREALELGARMAE 659

Query: 637 NPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFS-------RERELDEAAVDDF 689
           +P   VT++RF+ +   + +  I  RP+ +   E   SFS       +E+ELDE A  +F
Sbjct: 660 HPAVKVTVIRFV-EKDGSDSKDIILRPSPEKCDEQSYSFSTAAMDRQKEKELDEIATAEF 718

Query: 690 MRKWGGSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLG 749
             +WGG VEY EKV +NV + VL IG+  DY+LVVVGKGRFPST+ AELA+ Q E+  LG
Sbjct: 719 KSRWGGLVEYVEKVASNVVEGVLAIGKSGDYDLVVVGKGRFPSTMVAELAERQAEHAELG 778

Query: 750 LIGNILASSDHGIFASVLVIQQHNVADINEAIV 782
            IG+ILASS  GI +SVLVIQQH++A   E  V
Sbjct: 779 PIGDILASSGQGIVSSVLVIQQHDIAHAEEVPV 811

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147776948|emb|CAN63422.1| hypothetical protein VITISV_023524 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740402|emb|CBI30584.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573649|ref|XP_002527747.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223532888|gb|EEF34660.1| monovalent cation:proton antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224090288|ref|XP_002308966.1| cation proton exchanger [Populus trichocarpa] gi|222854942|gb|EEE92489.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225440298|ref|XP_002262680.1| PREDICTED: cation/H(+) antiporter 20 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481798|ref|XP_003632674.1| PREDICTED: cation/H(+) antiporter 20 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573653|ref|XP_002527749.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223532890|gb|EEF34662.1| monovalent cation:proton antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297740403|emb|CBI30585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448910|ref|XP_004142208.1| PREDICTED: cation/H(+) antiporter 20-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query782
TAIR|locus:2084370842 CHX20 "cation/H+ exchanger 20" 0.534 0.496 0.628 5.6e-215
TAIR|locus:2090462800 CHX19 "cation/H+ exchanger 19" 0.543 0.531 0.493 7.1e-167
TAIR|locus:2160457810 CHX18 "cation/H+ exchanger 18" 0.534 0.516 0.498 1.2e-162
TAIR|locus:2054152821 CHX15 "cation/hydrogen exchang 0.507 0.483 0.464 4.3e-156
TAIR|locus:2128484820 CHX17 "cation/H+ exchanger 17" 0.512 0.489 0.509 2.4e-153
TAIR|locus:2024578811 CHX16 "cation/H+ exchanger 16" 0.521 0.503 0.488 7e-143
TAIR|locus:2031968867 CHX23 "cation/H+ exchanger 23" 0.503 0.454 0.330 3.6e-85
ASPGD|ASPL0000061348883 AN1290 [Emericella nidulans (t 0.465 0.412 0.398 1.2e-77
DICTYBASE|DDB_G0290253 1008 nhe4 "cation/hydrogen exchange 0.734 0.569 0.315 2.2e-65
POMBASE|SPAC105.01c 889 kha1 "potassium ion/proton ant 0.588 0.517 0.338 4.1e-65
TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 5.6e-215, Sum P(2) = 5.6e-215
 Identities = 269/428 (62%), Positives = 321/428 (75%)

Query:     2 LPPNITSIKTSSDGVWQGDNPLNFAFPXXXXXXXXXXXXSHCLAVLIKPLRQPKVIAEIL 61
             +P NITS+KTSS+GVWQGDNPLNFAFP            S  LAVL KPLRQPKVIAEI+
Sbjct:     1 MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

Query:    62 GGILLGPSALGRNKEYLHLVFPSWSTPILEXXXXXXXXXXXXXXXXXXXXXXIRQNGKSA 121
             GGILLGPSALGRN  Y+  +FP WS PILE                      IR++GK A
Sbjct:    61 GGILLGPSALGRNMAYMDRIFPKWSMPILESVASIGLLFFLFLVGLELDLSSIRRSGKRA 120

Query:   122 FKIALAGITLPFLFGAGVSLFLQKAVH-GENKVGYGQFIIFMGVSLSITAFPVLARILAD 180
             F IA+AGITLPF+ G GV+  ++  ++   +K GY +F++FMGV+LSITAFPVLARILA+
Sbjct:   121 FGIAVAGITLPFIAGVGVAFVIRNTLYTAADKPGYAEFLVFMGVALSITAFPVLARILAE 180

Query:   181 LKLLTTQVGQTXXXXXXFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAF 240
             LKLLTTQ+G+T      FNDV AWILLALAV+LAG G       +S L+S+WVL+SG  F
Sbjct:   181 LKLLTTQIGETAMAAAAFNDVAAWILLALAVALAGNGGEGGGEKKSPLVSLWVLLSGAGF 240

Query:   241 VAFMLIVVRPIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFG 300
             V FML+V+RP M WVA++ S +N +V + Y+CLTL GVMVSGF TDLIGIH+IFGAFVFG
Sbjct:   241 VVFMLVVIRPGMKWVAKRGSPENDVVRESYVCLTLAGVMVSGFATDLIGIHSIFGAFVFG 300

Query:   301 LTIPKGGEFAVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACA 360
             LTIPK GEF  RL+++I+DFVSGLLLPLYFA+SGLKTDVAKIRG E+WG+L LV+  ACA
Sbjct:   301 LTIPKDGEFGQRLIERIEDFVSGLLLPLYFATSGLKTDVAKIRGAESWGMLGLVVVTACA 360

Query:   361 GKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLN---------DEMFAILVLMAL 411
             GKI+GTFV+A++  +P RE+L LG LMNTKGLVELIVLN         DE FAILVLMAL
Sbjct:   361 GKIVGTFVVAVMVKVPAREALTLGFLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMAL 420

Query:   412 FTTFMTTP 419
             FTTF+TTP
Sbjct:   421 FTTFITTP 428
GO:0006812 "cation transport" evidence=IEA;IC
GO:0009507 "chloroplast" evidence=ISM
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS
GO:0012505 "endomembrane system" evidence=IDA
GO:0030104 "water homeostasis" evidence=IMP
GO:0030007 "cellular potassium ion homeostasis" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IMP
GO:0006885 "regulation of pH" evidence=IMP
TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000061348 AN1290 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290253 nhe4 "cation/hydrogen exchanger 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC105.01c kha1 "potassium ion/proton antiporter Kha1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M353CHX20_ARATHNo assigned EC number0.59680.99740.9263yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000456
cation proton exchanger (833 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query782
PLN03159832 PLN03159, PLN03159, cation/H(+) antiporter 15; Pro 0.0
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 2e-61
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 9e-60
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 6e-39
PRK03562621 PRK03562, PRK03562, glutathione-regulated potassiu 5e-12
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 6e-12
PRK03659601 PRK03659, PRK03659, glutathione-regulated potassiu 9e-11
COG4651408 COG4651, RosB, Kef-type K+ transport system, predi 3e-08
PRK10669558 PRK10669, PRK10669, putative cation:proton antipor 2e-07
pfam00582139 pfam00582, Usp, Universal stress protein family 2e-04
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
 Score =  698 bits (1803), Expect = 0.0
 Identities = 372/797 (46%), Positives = 517/797 (64%), Gaps = 63/797 (7%)

Query: 12  SSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSAL 71
           +++G+WQGDNPL+F+ PL I+Q TLV++T+  L  ++KP RQP+VI+EILGG++LGPS L
Sbjct: 26  TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVL 85

Query: 72  GRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITL 131
           G+++ + + +FP  S  +LE++A++GLL+FLFLVG+E+D+S IR+ GK A  IA+AG+ L
Sbjct: 86  GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMAL 145

Query: 132 PFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSITAFPVLARILADLKLLTTQVGQT 191
           PF  G   S    +       V  G FI+F+GV+LS+TAFPVLARILA++KL+ T++G+ 
Sbjct: 146 PFCIGLAFSFIFHQV---SRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRI 202

Query: 192 AMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVRPI 251
           AM+AA  ND+ AWILLALA++LA   S       +SL S+WVL+S VAFV F   VVRP 
Sbjct: 203 AMSAALVNDMCAWILLALAIALAENDS-------TSLASLWVLLSSVAFVLFCFYVVRPG 255

Query: 252 MDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAV 311
           + W+ R+         + YICL L GVM+SGF+TD IG H++FGAFVFGL IP  G   V
Sbjct: 256 IWWIIRRTPEGET-FSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIP-NGPLGV 313

Query: 312 RLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMAL 371
            L++K++DFVSGLLLPL+FA SGLKT+V KI+G   WGLLVLVI MA AGKI+GT ++A 
Sbjct: 314 TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAF 373

Query: 372 LCMIPVRESLALGVLMNTKGLVELIVLN---------DEMFAILVLMALFTTFMTTPM-- 420
              +P RE + LG LMNTKGLVE+IVLN         DE FA++VL+A+  T + TP+  
Sbjct: 374 FYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVT 433

Query: 421 --------------RQLPAAK-DSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKL 465
                         R +  +K D+  E R+  CVH P NVP++I L E    T++S + +
Sbjct: 434 VVYRPARRLVGYKRRTIQRSKHDA--ELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI 491

Query: 466 YVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQ-LRRVTIRHS 524
           YV+ LVELT R+S++L+V  TRK+G P +NR  Q  S D I+ +FE Y+Q    V+++  
Sbjct: 492 YVLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQS-DHIINAFENYEQHAGCVSVQPL 549

Query: 525 TAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAP 584
           TAIS  STMHED+ ++AE KRV++I++PFHKQ   +G  E       +R VN+ VL NAP
Sbjct: 550 TAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNP--AFRGVNQNVLANAP 607

Query: 585 CSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTL 644
           CSV +LVDRG            +  V   V ++FFGGPDDR AL    RM+E+PG  +T+
Sbjct: 608 CSVGILVDRGL----SGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTV 663

Query: 645 VRFIGQASRAATSSIAERPTSD-----ISTENGNSFSRERELDEAAVDDFMRKWGG--SV 697
           +RFI     A T+S      SD     + T+      +ER+LDE  +++F  +  G  S+
Sbjct: 664 MRFIPGEDAAPTASQPASSPSDPRIPTVETDG----KKERQLDEEYINEFRARNAGNESI 719

Query: 698 EYEEKVMANVKDEVLKI-GQIRDYELVVVGKGR-FPSTIEAELADHQPENVGLGLIGNIL 755
            Y EKV++N ++ V  I      ++L +VG+G+   S + A L D   E   LG IG++L
Sbjct: 720 VYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWS-ECPELGAIGDLL 778

Query: 756 ASSDHGIFASVLVIQQH 772
           ASSD     SVLV+QQ+
Sbjct: 779 ASSDFAATVSVLVVQQY 795

Length = 832
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 782
PLN03159832 cation/H(+) antiporter 15; Provisional 100.0
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PRK03562621 glutathione-regulated potassium-efflux system prot 100.0
PRK03659601 glutathione-regulated potassium-efflux system prot 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
PRK10669558 putative cation:proton antiport protein; Provision 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.96
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.95
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.93
PRK11175305 universal stress protein UspE; Provisional 99.93
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.92
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.91
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.76
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.71
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.61
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.53
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.46
PRK15456142 universal stress protein UspG; Provisional 99.45
PRK15005144 universal stress protein F; Provisional 99.43
PRK09982142 universal stress protein UspD; Provisional 99.41
PRK15118144 universal stress global response regulator UspA; P 99.39
PRK15456142 universal stress protein UspG; Provisional 99.37
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.35
PRK15005144 universal stress protein F; Provisional 99.34
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 99.34
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.32
cd01987124 USP_OKCHK USP domain is located between the N-term 99.32
PRK15118144 universal stress global response regulator UspA; P 99.32
PRK10116142 universal stress protein UspC; Provisional 99.31
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.29
PRK09982142 universal stress protein UspD; Provisional 99.28
cd01987124 USP_OKCHK USP domain is located between the N-term 99.2
KOG1966670 consensus Sodium/hydrogen exchanger protein [Inorg 99.19
PRK10116142 universal stress protein UspC; Provisional 99.18
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.14
PRK11175 305 universal stress protein UspE; Provisional 99.14
cd00293130 USP_Like Usp: Universal stress protein family. The 98.91
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 98.88
COG0589154 UspA Universal stress protein UspA and related nuc 98.87
cd00293130 USP_Like Usp: Universal stress protein family. The 98.86
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 98.78
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 98.75
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 98.74
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 98.71
COG0589154 UspA Universal stress protein UspA and related nuc 98.66
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 98.65
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 98.64
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 98.46
PRK12652357 putative monovalent cation/H+ antiporter subunit E 98.04
TIGR00698335 conserved hypothetical integral membrane protein. 97.82
PRK10490 895 sensor protein KdpD; Provisional 97.44
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 97.38
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 97.36
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 97.35
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 97.34
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 97.31
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 97.03
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 96.96
PRK10490 895 sensor protein KdpD; Provisional 96.96
COG3493438 CitS Na+/citrate symporter [Energy production and 96.64
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.6
COG2855334 Predicted membrane protein [Function unknown] 96.38
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 96.1
PF03956191 DUF340: Membrane protein of unknown function (DUF3 96.02
PRK03562621 glutathione-regulated potassium-efflux system prot 95.99
PRK03659601 glutathione-regulated potassium-efflux system prot 95.89
TIGR00832328 acr3 arsenical-resistance protein. The first prote 95.79
COG0385319 Predicted Na+-dependent transporter [General funct 95.45
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 95.29
PRK03818552 putative transporter; Validated 95.22
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 95.19
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 94.99
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 94.98
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 94.87
PRK10669558 putative cation:proton antiport protein; Provision 94.77
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 94.55
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 94.44
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 94.29
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 94.09
PLN03159832 cation/H(+) antiporter 15; Provisional 93.91
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 93.35
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 93.31
COG0475397 KefB Kef-type K+ transport systems, membrane compo 93.21
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 93.1
PRK05326562 potassium/proton antiporter; Reviewed 93.0
PRK04972558 putative transporter; Provisional 92.94
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 92.88
TIGR01625154 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati 92.72
TIGR00698335 conserved hypothetical integral membrane protein. 92.67
TIGR00841286 bass bile acid transporter. Functionally character 92.62
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 92.02
COG2855334 Predicted membrane protein [Function unknown] 91.96
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 91.95
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 90.77
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 90.6
COG3180352 AbrB Putative ammonia monooxygenase [General funct 90.47
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 88.91
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 88.46
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 88.0
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 87.8
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 86.88
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 86.84
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 86.74
PRK04972558 putative transporter; Provisional 86.38
COG2985544 Predicted permease [General function prediction on 85.14
PRK03818552 putative transporter; Validated 84.15
COG1646240 Predicted phosphate-binding enzymes, TIM-barrel fo 83.88
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 83.26
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 82.71
PRK04288232 antiholin-like protein LrgB; Provisional 82.27
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 81.48
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 80.88
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.8e-128  Score=1145.96  Aligned_cols=743  Identities=49%  Similarity=0.841  Sum_probs=651.2

Q ss_pred             ccCCCCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHhhCccccCCchhhhcccCCCCchHH
Q 003979           10 KTSSDGVWQGDNPLNFAFPLLIIQTTLVLLTSHCLAVLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPI   89 (782)
Q Consensus        10 ~~~s~~~~~~~~~~~~~~~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~il~GillGp~~lg~~~~~~~~~fp~~~~~~   89 (782)
                      +.+|+|+|+|+||++|++|.+++|+++++++++++++++||+|||.++|||++|+++||+++|.++.+.+.+||.++.+.
T Consensus        24 ~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~  103 (832)
T PLN03159         24 MITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMV  103 (832)
T ss_pred             CccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999888889999888889


Q ss_pred             HHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhHHHHHHHHHHhhc
Q 003979           90 LESLASVGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFMGVSLSIT  169 (782)
Q Consensus        90 l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~s~T  169 (782)
                      +++++++|++++||++|+|+|++.+|+++|+++.+++.++++||++|+.++++++...   ........++++|+++|.|
T Consensus       104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~---~~~~~~~~~l~~g~alS~T  180 (832)
T PLN03159        104 LETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS---RNVHQGTFILFLGVALSVT  180 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998887764321   1122234578999999999


Q ss_pred             cHHHHHHHHHHccccCCchHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 003979          170 AFPVLARILADLKLLTTQVGQTAMAAAAFNDVVAWILLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVR  249 (782)
Q Consensus       170 s~~vv~~il~el~l~~s~~g~l~l~~a~i~D~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  249 (782)
                      |+||++++|+|+|+++++.||+++++++++|+++|++++++..+...+       ......+|.++..++|++++.+++|
T Consensus       181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-------~~~~~~l~~~l~~~~f~~~~~~v~r  253 (832)
T PLN03159        181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-------STSLASLWVLLSSVAFVLFCFYVVR  253 (832)
T ss_pred             hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887665431       1223355666777788888889999


Q ss_pred             HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhhhHHHH
Q 003979          250 PIMDWVARQCSSDNVLVDDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGEFAVRLMKKIQDFVSGLLLPLY  329 (782)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~i~~~~g~~~~lgaf~aGl~~~~~~~~~~~l~~~l~~~~~~~f~plf  329 (782)
                      |++.|+.||+ +++++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|++++++++|+|+|
T Consensus       254 ~~~~~~~r~~-~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlF  331 (832)
T PLN03159        254 PGIWWIIRRT-PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLF  331 (832)
T ss_pred             HHHHHHHHhC-cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 888888899999999999999999999999999999999999997 78899999999999999999999


Q ss_pred             HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcccceeec---------cCh
Q 003979          330 FASSGLKTDVAKIRGIEAWGLLVLVISMACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV---------LND  400 (782)
Q Consensus       330 F~~~G~~id~~~l~~~~~~~~~~~~v~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~m~~kG~~~lvl---------i~~  400 (782)
                      |+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++         +++
T Consensus       332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~  411 (832)
T PLN03159        332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD  411 (832)
T ss_pred             HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence            99999999998886544566666777888999999999999999999999999999999999999987         899


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhcc---cccc------------CCcccceEEEEecCCCChhHHHHHHHHhccCCCCCceE
Q 003979          401 EMFAILVLMALFTTFMTTPMRQL---PAAK------------DSKDEFRIQACVHGPENVPSLIKLTELIRTTEKSTLKL  465 (782)
Q Consensus       401 ~~~~~lv~~~~v~t~i~~pl~~~---~~~~------------~~~~e~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v  465 (782)
                      +.|++++++++++|.+++|++.+   |+||            ++++|+|||+|+|++++++.+++|++++++++++|.++
T Consensus       412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~v  491 (832)
T PLN03159        412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI  491 (832)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceE
Confidence            99999999998899999999988   5444            57889999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHHHhhc-cceEEEEeEEecCCCchHHHHHHHHHhc
Q 003979          466 YVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEAYKQL-RRVTIRHSTAISALSTMHEDIFHVAEAK  544 (782)
Q Consensus       466 ~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~v~~~~~v~~~~~~~~~I~~~a~~~  544 (782)
                      |+|||+|+++|+++.++.|+.+++..+..++.  ..++|++.++|+.|++. ++++++++++++|+++||+|||+.|+|+
T Consensus       492 y~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~--~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~  569 (832)
T PLN03159        492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRT--QAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDK  569 (832)
T ss_pred             EEEEEEeecCCCccceeeeecccccccccccc--cccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhc
Confidence            99999999999999998887654433222211  24579999999999976 5899999999999999999999999999


Q ss_pred             CccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEecCCCCCCCCCcccCccccccceEEEeccCCcch
Q 003979          545 RVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVDRGFGFGSDQTVAEPAATVLKRVCIIFFGGPDD  624 (782)
Q Consensus       545 ~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~~  624 (782)
                      ++++||+|||++|+.||.+++.  +..+|.+|++|+++|||+|+|+||||.. +..+....+   ..+||+++|.||+||
T Consensus       570 ~~slIilpfhk~~~~dg~~~~~--~~~~r~~n~~VL~~ApCsVgIlVDRg~~-~~~~~~~~~---~~~~v~~~F~GG~DD  643 (832)
T PLN03159        570 RVSLIIIPFHKQQTVDGGMEAT--NPAFRGVNQNVLANAPCSVGILVDRGLS-GATRLASNQ---VSHHVAVLFFGGPDD  643 (832)
T ss_pred             CCCEEEECCCCccCCCCCcccc--CchHHHHHHHHHccCCCCEEEEEeCCCC-ccccccccc---cceeEEEEecCCcch
Confidence            9999999999999999999888  8899999999999999999999999865 332322233   467999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEeeecCccccccc-ccCCCCCCCcccCCCCcchhhhhHHHHHHHHHHh--cCCcEEEEE
Q 003979          625 RRALDLGGRMAENPGGNVTLVRFIGQASRAATSS-IAERPTSDISTENGNSFSRERELDEAAVDDFMRK--WGGSVEYEE  701 (782)
Q Consensus       625 ~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~~e  701 (782)
                      ||||+||+|||+|+++++|++|+++.+....... ...++............++|++.||++++||+.+  .++++.|.|
T Consensus       644 REALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E  723 (832)
T PLN03159        644 REALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTE  723 (832)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence            9999999999999999999999997543221000 0000000000000001134788999999999998  467899999


Q ss_pred             EEecChHHHHHHhhcccC-CcEEEEccCCC-CccccccccccCCCCcccccchhhhhcCCCCCcccEEEEeecc
Q 003979          702 KVMANVKDEVLKIGQIRD-YELVVVGKGRF-PSTIEAELADHQPENVGLGLIGNILASSDHGIFASVLVIQQHN  773 (782)
Q Consensus       702 ~~v~~g~~~~~~~~~~~~-~DLivvG~~g~-~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~~~~~sVLvvqq~~  773 (782)
                      +.|+|++|++..++++++ |||++|||+++ +|++++||++ |+||||||+|||+|||+||.+++||||||||.
T Consensus       724 ~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~-w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        724 KVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             EecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccc-cccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            999999999999999997 99999999884 6999999999 99999999999999999999999999999997

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>COG2985 Predicted permease [General function prediction only] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query782
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 84/645 (13%), Positives = 173/645 (26%), Gaps = 231/645 (35%)

Query: 55  KVIAEILGGILLGPSALGRNKEYLHLVFPSWSTPILESLASVGLLFFLFLVGLELDLSSI 114
           K + ++   IL         +E  H         I+ S  +V     LF          +
Sbjct: 36  KDVQDMPKSIL-------SKEEIDH---------IIMSKDAVSGTLRLFWT--------L 71

Query: 115 RQNGKSAFKIALAGITLPFLFGAGVSLFLQKAVHGENKVGYGQFIIFM-------GVSLS 167
               +   +  +  + L   +      FL   +  E +       +++         +  
Sbjct: 72  LSKQEEMVQKFVEEV-LRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 168 ITAFPV--------LARILADLK---LLTTQ----VGQTAMAAAA---------FNDVVA 203
              + V        L + L +L+    +        G+T +A             +  + 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 204 WI--------------LLALAVSLAGKGSGAESHHQSSLISIWVLISGVAFVAFMLIVVR 249
           W+              L  L   +    +    H  +  + I  + + +          R
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---------R 236

Query: 250 PIMDWVARQCSSDNVLV-DDVYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGE 308
            +       C    +LV  +V                +       + AF     I     
Sbjct: 237 LLKSKPYENC----LLVLLNVQ---------------NA----KAWNAFNLSCKI----- 268

Query: 309 FAVRLM----KKIQDFVSGLL---LPLYFASSGLKTDVAKIRGIEAWGLLVLVISM---- 357
               L+    K++ DF+S      + L   S  L  D       E   LL+  +      
Sbjct: 269 ----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-------EVKSLLLKYLDCRPQD 317

Query: 358 ----ACAGKILGTFVMALLCMIPVRESLALGVL-------MNTKGLVELI-----VLND- 400
                             L +I   ES+  G+        +N   L  +I     VL   
Sbjct: 318 LPREVLTTNPR------RLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 401 ------EMFAIL---------VLMALFT--------TFMTTPMRQLPAAKDSKDEFRIQA 437
                 +  ++          +L  ++           +    +     K  K E  I  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTIS- 427

Query: 438 CVHG--------PENVPSL-IKLTE---LIRTTEKSTLKL-----YV-------MRLVEL 473
            +           EN  +L   + +   + +T +   L       Y        ++ +E 
Sbjct: 428 -IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 474 TDRSSSILMV--------QKTRKNGVPF---------INRFRQGMSHDQIVTSFEAYKQL 516
            +R +   MV        QK R +   +         + + +    +  I  +   Y++L
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERL 544

Query: 517 RRVTIR--HSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRR 559
               +        + + + + D+  +A       I    HKQ +R
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query782
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.93
3olq_A319 Universal stress protein E; structural genomics, P 99.92
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.91
3loq_A294 Universal stress protein; structural genomics, PSI 99.91
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.88
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.85
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.47
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.46
3dlo_A155 Universal stress protein; unknown function, struct 99.44
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.44
3tnj_A150 Universal stress protein (USP); structural genomic 99.43
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.43
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.43
2z08_A137 Universal stress protein family; uncharacterized c 99.42
3fg9_A156 Protein of universal stress protein USPA family; A 99.39
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.39
3fdx_A143 Putative filament protein / universal stress PROT; 99.36
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.35
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.34
3fdx_A143 Putative filament protein / universal stress PROT; 99.33
3dlo_A155 Universal stress protein; unknown function, struct 99.31
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.31
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.29
2z08_A137 Universal stress protein family; uncharacterized c 99.28
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.28
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.27
3tnj_A150 Universal stress protein (USP); structural genomic 99.26
3fg9_A156 Protein of universal stress protein USPA family; A 99.25
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.25
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.24
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.23
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.22
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.13
3olq_A 319 Universal stress protein E; structural genomics, P 99.11
3loq_A 294 Universal stress protein; structural genomics, PSI 99.1
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.08
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.06
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.06
1q77_A138 Hypothetical protein AQ_178; structural genomics, 98.92
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 97.22
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 95.74
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=99.93  E-value=3.5e-25  Score=235.38  Aligned_cols=263  Identities=12%  Similarity=0.092  Sum_probs=189.5

Q ss_pred             ceEEEEecCCCChhHHHHHHHHhccCCCCCceEEEEEEeecCCCCchhhHHHhhhcCCCCccccccCCCchhHHHHHHHH
Q 003979          433 FRIQACVHGPENVPSLIKLTELIRTTEKSTLKLYVMRLVELTDRSSSILMVQKTRKNGVPFINRFRQGMSHDQIVTSFEA  512 (782)
Q Consensus       433 ~rILvpv~~~~~~~~~i~l~~~~~~~~~~~~~v~~Lhliel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  512 (782)
                      -|||+|+|+++....+++.+..++.  +.+..++++|+++ +.                         ...+.+.+..+.
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la~--~~~a~l~ll~v~~-~~-------------------------~~~~~l~~~~~~   59 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIAG--VTQSHLHLLVCEK-RR-------------------------DHSAALNDLAQE   59 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHHH--HHCCEEEEEEECS-SS-------------------------CCHHHHHHHHHH
T ss_pred             ceEEEEeCCCccchHHHHHHHHHHH--hcCCeEEEEEeeC-cH-------------------------HHHHHHHHHHHH
Confidence            4799999999999999999988874  3567899999986 10                         011222222222


Q ss_pred             HhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecccccccCCCcchhhhcccchHHHHHHHhhcCCCceEEEec
Q 003979          513 YKQLRRVTIRHSTAISALSTMHEDIFHVAEAKRVAMIVLPFHKQWRREGEEEIARVCHGWREVNRTVLQNAPCSVAVLVD  592 (782)
Q Consensus       513 ~~~~~~v~v~~~~~v~~~~~~~~~I~~~a~~~~~dlIv~g~~~~~~~~~~~~~~~~~~~~~~v~~~Vl~~apc~V~i~v~  592 (782)
                      +. ..++++++.....  ++..+.|++.|++.++||||||+|++.+..        +..+|++.+++++++||||+++. 
T Consensus        60 ~~-~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~--------~~~~gs~~~~vl~~~~~PVlvv~-  127 (290)
T 3mt0_A           60 LR-EEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLK--------KAILTPDDWKLLRFAPCPVLMTK-  127 (290)
T ss_dssp             HH-HTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTS--------TTSCCHHHHHHHHHCSSCEEEEC-
T ss_pred             Hh-hCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchh--------hcccCHHHHHHHhcCCCCEEEec-
Confidence            32 3556777766533  578999999999999999999999887655        45899999999999999999962 


Q ss_pred             CCCCCCCCCcccCccccccceEEEeccCCcc-------hHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCC
Q 003979          593 RGFGFGSDQTVAEPAATVLKRVCIIFFGGPD-------DRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTS  665 (782)
Q Consensus       593 r~~~~~~~~~~~~~~~~~~~~Ilv~~~g~~~-------~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~  665 (782)
                      .+..       .     .+++|++|+||+++       ++.|+++|.++|+..+++++++|+.++.......     +  
T Consensus       128 ~~~~-------~-----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~-----~--  188 (290)
T 3mt0_A          128 TARP-------W-----TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSAD-----P--  188 (290)
T ss_dssp             CCSC-------S-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----------------
T ss_pred             CCCC-------C-----CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccC-----c--
Confidence            2211       0     36899999999998       8999999999999999999999999754321000     0  


Q ss_pred             CCcccCCCCcchhhhhHHHHHHHHHHhcC-CcEEEEEEEecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCC
Q 003979          666 DISTENGNSFSRERELDEAAVDDFMRKWG-GSVEYEEKVMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPE  744 (782)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~v~~~e~~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e  744 (782)
                         .. . ..+..++..++.++++..+.+ ..+. .....+++.+.+...++..++||||||+||     ++|+.+    
T Consensus       189 ---~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g-----~~~~~~----  253 (290)
T 3mt0_A          189 ---TF-Q-LSETIEARYREACRTFQAEYGFSDEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA-----RTGLSG----  253 (290)
T ss_dssp             ---CH-H-HHHHHHHHHHHHHHHHHHHHTCCTTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS-----SCCGGG----
T ss_pred             ---hh-H-HHHHHHHHHHHHHHHHHHHcCCCcce-EEEeccCHHHHHHHHHHhcCCCEEEECCCC-----CcCCcc----
Confidence               00 0 001123444566666655421 1111 122345677777766666669999999999     999999    


Q ss_pred             CcccccchhhhhcCCCCCcccEEEEeecc
Q 003979          745 NVGLGLIGNILASSDHGIFASVLVIQQHN  773 (782)
Q Consensus       745 ~~~LG~vgd~l~s~d~~~~~sVLvvqq~~  773 (782)
                       ..+|++++.++++   ++||||||+.+.
T Consensus       254 -~~~Gsv~~~vl~~---~~~pVLvv~~~~  278 (290)
T 3mt0_A          254 -ALIGNTAEVVLDT---LESDVLVLKPDD  278 (290)
T ss_dssp             -CCSCHHHHHHHTT---CSSEEEEECCHH
T ss_pred             -eecchHHHHHHhc---CCCCEEEECCCC
Confidence             4899999999999   999999998764
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query782
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.56
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.51
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.46
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.45
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.42
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.31
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.31
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.29
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.26
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.2
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.16
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 98.95
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=4.2e-15  Score=140.48  Aligned_cols=149  Identities=13%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             ccceEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCcccccccccCCCCCCCcccCCCCcc-------hhhhhH
Q 003979          610 VLKRVCIIFFGGPDDRRALDLGGRMAENPGGNVTLVRFIGQASRAATSSIAERPTSDISTENGNSFS-------RERELD  682 (782)
Q Consensus       610 ~~~~Ilv~~~g~~~~~~al~~a~~la~~~~~~l~vl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  682 (782)
                      .++|||||+||++.+++|+++|..+|+..+++++++|++++.........+......  ..+....+       ...+..
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVA--GLNKSVEEFENELKNKLTEEA   79 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-------------------CHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEeccccccccccccccccccc--ccchhHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999765432110000000000  00000000       012233


Q ss_pred             HHHHHHHHHh-cCCcEEEEEE-EecChHHHHHHhhcccCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCC
Q 003979          683 EAAVDDFMRK-WGGSVEYEEK-VMANVKDEVLKIGQIRDYELVVVGKGRFPSTIEAELADHQPENVGLGLIGNILASSDH  760 (782)
Q Consensus       683 ~~~l~~~~~~-~~~~v~~~e~-~v~~g~~~~~~~~~~~~~DLivvG~~g~~~~~~~GL~~~w~e~~~LG~vgd~l~s~d~  760 (782)
                      ++.++++..+ ...++.++.. ..+++.+.+...++..++||||||+|+     ++++++     ..+|++++.++++  
T Consensus        80 ~~~l~~~~~~~~~~gv~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~-----~~~~~~-----~~~GS~a~~vl~~--  147 (160)
T d1mjha_          80 KNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHG-----KTNLKE-----ILLGSVTENVIKK--  147 (160)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCC-----SSCCTT-----CSSCHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeccHHHHHhhhhhccccceEEeccCC-----CCcccc-----cccCcHHHHHHhc--
Confidence            3555555544 2233444333 334567777777776669999999999     999999     4899999999999  


Q ss_pred             CCcccEEEEeecc
Q 003979          761 GIFASVLVIQQHN  773 (782)
Q Consensus       761 ~~~~sVLvvqq~~  773 (782)
                       ++||||||+.+.
T Consensus       148 -s~~pVlvV~~~~  159 (160)
T d1mjha_         148 -SNKPVLVVKRKN  159 (160)
T ss_dssp             -CCSCEEEECCCC
T ss_pred             -CCCCEEEEcCCC
Confidence             999999999863
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure