Citrus Sinensis ID: 003991

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-
Protein Sequence
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTKSNDQDHSCY
Secondary Structure (PSIPRED)
cccccHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHccccccHHcccccccccHHHHccccccHHHHHHcccHccccHHHHHHHHHcHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGcafsalgrkEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKqdrsvtceydvsnsmssltvsesglnandkmsetsenhnksdicdsssqsrdvsetcsksshdpdlcngrsdeakggssvpvsksglhingklrevsenhngssdgsksthasrdaseinrqssddfdicngpidkasvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQilkedpmypealigRGTARAFQRELEAAISDFTEAiqsnpsagEAWKRRGQARAALGESVEAIQDLSKalefepnsadilhergivnfkfkdFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDlssglgidpsnieCLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASkinsefcwfdidgdidplfkeywckrlhpknvcekvyrqpplrdslkkgklrrqdfsvTKQKTALLLVADSIGkkiqydcpgflsnrrqtynlshftksndqdhscy
Flexible Loop (DISEMBL)
mlkrklldsryrlnkthkticeidelvrvDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETsenhnksdicdsssqsrDVSEtcsksshdpdlcngrsdeakggssvpvsksgLHINGKLrevsenhngssdgsksthasrdaseinrqssddfdicNGPIDKAsvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklsfkWDMLKetsneakrnkkfcvtrisksksisvdfrlsrgiaqvnegkyASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRlhpknvcekvyrqpplrdslkkgklrrqdfsvtkqktaLLLVADSIGKKIQYDCPGFLSNRRQTynlshftksndqdhscy
Low Complexity Region (SEG)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAkggssvpvsksgLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKlssdsaslndsntnsesyskssisdnkssdstesrsklsFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYhlrglllhglgqhKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTKSNDQDHSCY
Disordered region (IsUnstruct)
*********RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ**SVTCE************************************************************************************************************************************************************************************************************KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF*************************************LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQ****************FSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNL**************
Disordered Region (DISOPRED)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTKSN*******
Disordered Region (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN*************************************LCNGRS**********VSKSGLHINGKLREVS***********************RQSSDDFDICNGPIDKASVNER**************************************************KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS******************GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTK*********
Disordered Region (DISPRO)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTKSNDQ***C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHFTKSNDQDHSCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	781	2.2.26 [Sep-21-2011]
Q8NBP0	860	Tetratricopeptide repeat	yes	no	0.483	0.439	0.289	5e-40
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.262	0.209	0.255	1e-12
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.331	0.278	0.242	9e-12
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.279	0.233	0.248	1e-10
Q68FQ7	659	RNA polymerase II-associa	no	no	0.302	0.358	0.269	6e-10
Q04737	248	TPR repeat-containing pro	N/A	no	0.186	0.588	0.270	1e-09
Q86TZ1	520	Tetratricopeptide repeat	no	no	0.313	0.471	0.252	1e-09
Q5ZKQ3	665	RNA polymerase II-associa	no	no	0.302	0.354	0.252	1e-09
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.279	0.238	0.248	1e-09
Q54VG4	334	Small glutamine-rich tetr	no	no	0.148	0.347	0.316	4e-09

>sp|Q8NBP0|TTC13_HUMAN Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 199/390 (51%), Gaps = 12/390 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAA 434
           S +  L+     +  G Y  AI  F  +L+E+P    A+ GRG A   +     +  E A
Sbjct: 142 STNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELA 201

Query: 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494
           + + +  I   P   E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F
Sbjct: 202 LFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYF 260

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
             +D+  A ED    ++L+K    A  Y GL     G  K+A E+  +A++   +F++A+
Sbjct: 261 ISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAY 320

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
             L Q Y++L N E A E  Q+ L +++   +   LRG++L+  G  ++A+K+    L +
Sbjct: 321 KSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQL 380

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF-YQKEIALYTA 673
           +P N  C Y++   + A+G++ E IK     +  +    +K   + L   Y +E + Y  
Sbjct: 381 EPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLH 440

Query: 674 SKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVT 733
           + +++    ++ID D+   FK++W K L    + E    QP L+  +K   +  Q+F   
Sbjct: 441 AHLDTPLTEYNIDVDLPGSFKDHWAKNL--PFLIEDYEEQPGLQPHIK--DVLHQNFESY 496

Query: 734 KQKTA-LLLVADSIGKKIQYDCPGFLSNRR 762
           K +   L+ VAD +G  +QY+ PGFL N+R
Sbjct: 497 KPEVQELICVADRLGSLMQYETPGFLPNKR 526

Homo sapiens (taxid: 9606)

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +L  A+  + EA++  P+  +A+   G    ALG   EAI     AL+  PNSA      
Sbjct: 238 DLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNI 297

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             + ++    + A+      +  D     AY  LG AL  IG   +A   + + + L  N
Sbjct: 298 ASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPN 357

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             +A  +L   Y +      A    +  L +    S  ++   ++    G +  AI   +
Sbjct: 358 HPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYN 417

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L IDP   + L  R + Y  IG   EAI+DY  A++ 
Sbjct: 418 EVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINF 456

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 72.8 bits (177), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 17/276 (6%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F+EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   +++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y +A C
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA--------YYKKALC 294

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           Y+    Y +A+ +   A    L      V   LAF+
Sbjct: 295 YN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   AI  + 
Sbjct: 139 KGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  +A +D  K LE EP++ +  +E R I        N+  +D
Sbjct: 199 SYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKD 258

Query: 506 LSACVK-LDKENKS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++A +K  + E K+           A   LG      G+Y++A E + + I  D      
Sbjct: 259 IAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALL 318

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    Y  +   E+A     Q + +D  +SKA+  RG     LG+  +A +D  + L 
Sbjct: 319 PANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLL 378

Query: 614 IDPSNIECL 622
           ++P N + +
Sbjct: 379 LEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q04737|Y751_SYNY3 TPR repeat-containing protein slr0751 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0751 PE=4 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +RG+A    G    AI+ + + +  D  Y    I RG   + Q++   AI DFT+AI  +
Sbjct: 100 NRGLAWERLGNVDQAIADYGRSIALDRYYIPPYINRGNLYSQQQDHHTAIQDFTQAITYD 159

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+  +A+  R  +   LG+  +AI D ++ L   P+  + ++ RG+ +F+    +++ +D
Sbjct: 160 PNRYKAYYNRANSYFQLGQYAQAIADYNRVLVLRPDYINAIYNRGLAHFQAGQLDSSRQD 219

Query: 506 L--SACVKLDKENKSAYTYLGLALSSIG 531
           L  SA   L++ ++ +Y      +S +G
Sbjct: 220 LLFSAQAYLNRGDRRSYLEALDQMSELG 247

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q86TZ1|TTC6_HUMAN Tetratricopeptide repeat protein 6 OS=Homo sapiens GN=TTC6 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 1/246 (0%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
           F + L  +P Y +A I  G     Q + + A + FT AI ++P    A++ R      +G
Sbjct: 270 FLKALHINPAYIKARISFGYNLQAQGKFQKAWNHFTIAIDTDPKNYLAYEGRAVVCLQMG 329

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
            +  A+QD++ A++    +A+ L  RG+++        A++D    + L+ +   AY   
Sbjct: 330 NNFAAMQDINAAMKIS-TTAEFLTNRGVIHEFMGHKQNAMKDYQDAITLNPKYSLAYFNA 388

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G       ++ +A +   KA++ D        +       L   E+A E    V+     
Sbjct: 389 GNIYFHHRQFSQASDYFSKALKFDPENEYVLMNRAITNTILKKYEEAKEDFANVIESCPF 448

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           ++  Y  R    + L Q++ A +DL+  L + P++      RA     IG   EA+ DY+
Sbjct: 449 WAAVYFNRAHFYYCLKQYELAEEDLNKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYN 508

Query: 644 AALDLE 649
            ALDLE
Sbjct: 509 QALDLE 514

Homo sapiens (taxid: 9606)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G +  AI  + + +  DP  P     R +A    ++   A SD   A+  + 
Sbjct: 139 KGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDK 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------KDF 499
           +  +A+ RRG AR AL     A +D  K LE + N+ +  +E   +           K+F
Sbjct: 199 NYTKAYARRGAARFALKNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEF 258

Query: 500 NAAV-----EDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             AV     E+   C++ ++  + A T   LG      G+Y+ A E + + I  D     
Sbjct: 259 EEAVRSELTENERRCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNAL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
              +    Y  +   E+A     Q L +D  +SKA+  RG     LG+ K+A++D  + L
Sbjct: 319 LPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVL 378

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 379 KLEPGNKQAI 388

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+++++ +L++D    EA IG+G     Q +   A   F+EAI+ +P    A    
Sbjct: 58  KFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHC 117

Query: 456 GQARAALGESVEAIQDLSKAL----EFEPNS---ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL     ++P +   A +L + G       +    ++    
Sbjct: 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYE 177

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVA 282

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
           +KF  ++  + K+I+   + + G A++NEGK+  A+S +++ +  D         R    
Sbjct: 131 QKFMESKAGEVKAIAEKLK-NEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATY 189

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
           +  +  E +I D  EAI+ NP+ G+A+ R G A  +LG+  EA++  +KA+E EPN+
Sbjct: 190 SALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	781
255567975	1101	tetratricopeptide repeat protein, tpr, p	0.930	0.660	0.711	0.0
225438920	1068	PREDICTED: tetratricopeptide repeat prot	0.886	0.647	0.680	0.0
449448472	1046	PREDICTED: tetratricopeptide repeat prot	0.855	0.638	0.629	0.0
449520722	1046	PREDICTED: tetratricopeptide repeat prot	0.855	0.638	0.628	0.0
356565517	1042	PREDICTED: tetratricopeptide repeat prot	0.848	0.636	0.631	0.0
356496945	1047	PREDICTED: tetratricopeptide repeat prot	0.845	0.630	0.622	0.0
297798124	1043	hypothetical protein ARALYDRAFT_912592 [	0.845	0.632	0.593	0.0
186517170	1052	suppressor of RPS4-RLD 1 / tetratricopep	0.852	0.633	0.588	0.0
26449774	883	unknown protein [Arabidopsis thaliana] g	0.852	0.754	0.588	0.0
357482703	798	Tetratricopeptide repeat protein [Medica	0.678	0.664	0.679	0.0

>gi|255567975|ref|XP_002524965.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223535800|gb|EEF37462.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/732 (71%), Positives = 598/732 (81%), Gaps = 5/732 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLC+ R+WSKAIR+LDSLL+QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCASRDWSKAIRVLDSLLSQSCTIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQLDP LLQAYILKG AFS+LGRK++AL VW++GYEHAL QSADLKQ LELEELL  
Sbjct: 61  DKALQLDPMLLQAYILKGRAFSSLGRKDDALLVWQQGYEHALRQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQ+R++     V+ S + +  +E   + N K +E S+N ++ SDI +S  +S D SE C
Sbjct: 121 AKQERNIGLRDHVTES-TPMNTTEFATHTNGKSNEASKNRDQLSDISNSCRESGDGSEIC 179

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SK   + D  N   D+A G S + + +   H+NGK  +V  NH+   D SK  + SRD  
Sbjct: 180 SKFGGNFDAMNVIRDKAGGESPITIPECRPHMNGKSDDVCTNHDKLGDKSKLHNESRDTY 239

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           +I   S D+  I N    KA  + +  +  NGTH+  DK+S DS S N  +  S   SKS
Sbjct: 240 KICCNSGDNCAIQNYLSRKAEGDVKTDK--NGTHNFIDKIS-DSESCNVLSDTSVPSSKS 296

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S     S D+++ R KLS K D+  E  +E K++KKF VTRISK+KSI+VDFRLSRGIAQ
Sbjct: 297 STISISSGDTSDIRVKLSNKTDIPNEAGDETKKSKKFSVTRISKTKSITVDFRLSRGIAQ 356

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYASAISIFDQIL EDP YPEALIGRGTA AFQRELEAAI+DF++AIQSNP AGEA
Sbjct: 357 VNEGKYASAISIFDQILTEDPTYPEALIGRGTAHAFQRELEAAIADFSKAIQSNPLAGEA 416

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES+EAI DL+KALEFEPNSADILHERGIVNFKFKDF+AAV+DLSACVK
Sbjct: 417 WKRRGQARAALGESIEAIHDLTKALEFEPNSADILHERGIVNFKFKDFDAAVQDLSACVK 476

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           LDK+NKSAYTYLGLALSS GEYKKAEEAHLK+IQLDR+FLE W HLTQFYQDLAN  KA 
Sbjct: 477 LDKDNKSAYTYLGLALSSTGEYKKAEEAHLKSIQLDRSFLEGWAHLTQFYQDLANLTKAF 536

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
           EC++QVL ID RF+KAYHL GLLLHG+G+H+KAIK+LS GL I+ SNIECLYLRASCYHA
Sbjct: 537 ECIKQVLQIDARFAKAYHLHGLLLHGMGEHRKAIKELSLGLSIENSNIECLYLRASCYHA 596

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691
           IGEY EA+KDYDA LD+ELDSMEKFVLQCLAFYQKE+ALYTASKINSEFCWFDIDGDIDP
Sbjct: 597 IGEYGEAVKDYDATLDMELDSMEKFVLQCLAFYQKELALYTASKINSEFCWFDIDGDIDP 656

Query: 692 LFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQ 751
           LFKEYWCKRLHPKNVCEKVYRQPPLRDSLK+GKLR+QDF +TKQKTALL+ ADSIGKKIQ
Sbjct: 657 LFKEYWCKRLHPKNVCEKVYRQPPLRDSLKRGKLRKQDFVITKQKTALLMAADSIGKKIQ 716

Query: 752 YDCPGFLSNRRQ 763
           YDCPGFL NRRQ
Sbjct: 717 YDCPGFLPNRRQ 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438920|ref|XP_002279290.1| PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera]

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/733 (68%), Positives = 578/733 (78%), Gaps = 41/733 (5%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           M SAI+ R ELAKLCS R+WSKAIR+LDSLLAQS  IQDICNRAFCYS+LELHKHVIRDC
Sbjct: 1   MESAISERQELAKLCSCRDWSKAIRVLDSLLAQSCVIQDICNRAFCYSKLELHKHVIRDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQL+PTLLQAYILKG A SALG+KE+AL VWE+GY HA+ QSADLKQFLELEELL  
Sbjct: 61  DKALQLEPTLLQAYILKGHALSALGKKEDALLVWEQGYGHAVRQSADLKQFLELEELL-- 118

Query: 153 AKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211
            KQ+R +TCE + + +  SS++VSES L+ N+K + T +N +K +         D SE C
Sbjct: 119 -KQNRRITCENHAMESPESSISVSESALHVNEKPNSTHKNDSKLN---------DESELC 168

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           S+SS   +                       I+ K     +N +  +D S+    S D S
Sbjct: 169 SESSDTSE-----------------------IHCKPNSTHKNDSKLNDESELCSESSDTS 205

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI+ ++ D  D  +   D  + NE+   ++NGT+D+  K S +S   ++ N  SE  SKS
Sbjct: 206 EIHCKAFDTSDGHDELRDTVNGNEKLNSESNGTYDIFVKSSDESELCSELNDTSEQSSKS 265

Query: 332 SIS-DNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390
           S+   +KSSD +E R K S K+D+  E  +EA RNKKFCVTRISK+KSISVDFRLSRGIA
Sbjct: 266 SVVIHSKSSDISEVRRKSSNKYDIRSELGDEANRNKKFCVTRISKTKSISVDFRLSRGIA 325

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           QVNEG Y++AISIFDQILKEDP YPEAL+GRGTA AFQREL +AI+DFT+AI+SNPSA E
Sbjct: 326 QVNEGNYSNAISIFDQILKEDPTYPEALVGRGTAYAFQRELSSAIADFTKAIESNPSACE 385

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
           AWKRRGQARAALGES EAI+DL+KALEFEPNS DILHERGIVNFKFKDFNAAVEDLSACV
Sbjct: 386 AWKRRGQARAALGESSEAIEDLTKALEFEPNSTDILHERGIVNFKFKDFNAAVEDLSACV 445

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
           +LDKENKSAYTYLGLALSSIGEYK+AEEAH+K+IQLD+NFLE W HLTQFYQDLAN  KA
Sbjct: 446 QLDKENKSAYTYLGLALSSIGEYKRAEEAHMKSIQLDQNFLEGWAHLTQFYQDLANPTKA 505

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
           LEC+++VL ID+ F+KAYHLRGLL HG+G+HKKAI DLS GLGI+ SNIECLYLRASCYH
Sbjct: 506 LECIERVLQIDEGFAKAYHLRGLLRHGMGEHKKAITDLSIGLGIENSNIECLYLRASCYH 565

Query: 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690
           AIGEY EAIKDYD AL LELDSMEKFVLQCLAFYQKE+ALY ASK+N EFCWFDID DI+
Sbjct: 566 AIGEYGEAIKDYDKALTLELDSMEKFVLQCLAFYQKELALYAASKMNVEFCWFDIDRDIN 625

Query: 691 PLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKI 750
           PLFKEYWCKRLHPK+V E V+RQP    SLKK K R+QDF+VTKQK ALL  ADSIGKKI
Sbjct: 626 PLFKEYWCKRLHPKHVSENVFRQP----SLKKNKHRKQDFAVTKQKAALLHAADSIGKKI 681

Query: 751 QYDCPGFLSNRRQ 763
           QY+CPGFL NRRQ
Sbjct: 682 QYNCPGFLPNRRQ 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448472|ref|XP_004141990.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/734 (62%), Positives = 552/734 (75%), Gaps = 66/734 (8%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESGFSTVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689
           HAIGEY  A+KDYDA LDL+LDSMEKFVLQCLAFYQKEIALYTASK +S+FCWFDIDGDI
Sbjct: 538 HAIGEYGLAVKDYDATLDLDLDSMEKFVLQCLAFYQKEIALYTASKSSSDFCWFDIDGDI 597

Query: 690 DPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKK 749
           DPLFKEYWCKRLHPK+VCEKV+RQPP+R+SLKKG+LR+Q+  +TKQK +LLL AD+ G+K
Sbjct: 598 DPLFKEYWCKRLHPKDVCEKVFRQPPIRESLKKGRLRKQEHGMTKQKISLLLAADTTGRK 657

Query: 750 IQYDCPGFLSNRRQ 763
           IQYDCPGFLSNRRQ
Sbjct: 658 IQYDCPGFLSNRRQ 671

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520722|ref|XP_004167382.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/734 (62%), Positives = 551/734 (75%), Gaps = 66/734 (8%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESRFSAVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689
           HAIGEY  A+KDYD  LDL+LDSMEKFVLQCLAFYQKEIALYTASK +S+FCWFDIDGDI
Sbjct: 538 HAIGEYGLAVKDYDVTLDLDLDSMEKFVLQCLAFYQKEIALYTASKSSSDFCWFDIDGDI 597

Query: 690 DPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKK 749
           DPLFKEYWCKRLHPK+VCEKV+RQPP+R+SLKKG+LR+Q+  +TKQK +LLL AD+ G+K
Sbjct: 598 DPLFKEYWCKRLHPKDVCEKVFRQPPIRESLKKGRLRKQEHGMTKQKISLLLAADTTGRK 657

Query: 750 IQYDCPGFLSNRRQ 763
           IQYDCPGFLSNRRQ
Sbjct: 658 IQYDCPGFLSNRRQ 671

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565517|ref|XP_003550986.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/735 (63%), Positives = 549/735 (74%), Gaps = 72/735 (9%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA A + R+ELA+LC+ ++WSKAIRILDSL++ S  IQD+CNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPATSERVELARLCASKDWSKAIRILDSLVSHSNAIQDLCNRAFCYSKLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG A S LGRKE AL VWE+GYEHALHQSADLKQ LELEEL+  
Sbjct: 61  DRALQLDPTLLQAYILKGSALSVLGRKENALLVWEQGYEHALHQSADLKQLLELEELIAT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN----KSDICDSSSQSRDVS 208
           AKQ  +  CE   S +  SL  ++S   +N   SET +  +    ++++C  ++   D S
Sbjct: 121 AKQGNNTLCE---SETHRSLPQTKSVSLSNGSSSETCKIQDTLGTRAELCGDATG--DKS 175

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASR 268
           ETC KS+ + +L +   DE                    RE S   +G  +GS       
Sbjct: 176 ETCLKSADNSNLKHESHDE-------------------YRE-SNKSDGQVNGSPDV---L 212

Query: 269 DASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY 328
           D    N +S +D    +   DK S N                 S DSA++     N    
Sbjct: 213 DTLSYNSESCNDSSDASESSDKVSTN-----------------SGDSANVPKIFRN--PI 253

Query: 329 SKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRG 388
           SK   SD +  +                     A++NKKFCV RIS + SISVDFRLSRG
Sbjct: 254 SKFIFSDERKGE---------------------ARKNKKFCVARISNTNSISVDFRLSRG 292

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           IA+VNEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP A
Sbjct: 293 IAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLA 352

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
           GEAWKRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSA
Sbjct: 353 GEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSA 412

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
           CVKLDK+N SAYTYLGLALSSIGEYK+AEEAHLK++QLD+NFLEAW HLTQFYQDLA   
Sbjct: 413 CVKLDKDNTSAYTYLGLALSSIGEYKEAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPT 472

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
           KA EC+ ++L+ID RF++AYHLRGLL H +G+H+KAIKDL+ GL ID SNIECLYLRASC
Sbjct: 473 KAQECINRMLHIDGRFARAYHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASC 532

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688
           YHA+G+Y+EA+KDYDAALDLELDSM+KFVLQCL FYQKEIALYTASK N +FCWFDIDGD
Sbjct: 533 YHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLVFYQKEIALYTASKFNGDFCWFDIDGD 592

Query: 689 IDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGK 748
           ID LFKEYWCK+LHPKNVCEKV+RQPPLR+SL+KGKL++Q+F++TKQK ALL  +DSIG 
Sbjct: 593 IDALFKEYWCKKLHPKNVCEKVFRQPPLRESLRKGKLKKQEFTITKQKAALLQASDSIGM 652

Query: 749 KIQYDCPGFLSNRRQ 763
           KIQYDCPGFL NRRQ
Sbjct: 653 KIQYDCPGFLPNRRQ 667

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496945|ref|XP_003517325.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/741 (62%), Positives = 544/741 (73%), Gaps = 81/741 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA   + R  LA+LCS ++WSKAIR+LDSL++QS  IQDICNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPTTSQRATLARLCSSKDWSKAIRVLDSLVSQSGAIQDICNRAFCYSRLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           +KALQLDP+ LQAYILKG A SALGRK +AL VWE+GYEHA HQSADLK  LELEELLT 
Sbjct: 61  NKALQLDPSRLQAYILKGHALSALGRKTDALLVWEQGYEHAQHQSADLKLLLELEELLTT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK----SDICDSSSQSRDVS 208
            KQ  S   E     + S ++ SES   ++  ++E  EN ++     ++CD++S   D S
Sbjct: 121 TKQGNSALYE----TNGSPVSQSESDSPSDGNLTEICENQDRLSVQDELCDNAS---DKS 173

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHING------KLREVSENHNGSSDGSK 262
               KS+ + DL N  + E +       +KS   +NG      KL   SE+ N SSD S+
Sbjct: 174 LILLKSADNFDLRNELNIEDRES-----NKSDSQVNGSPDVIDKLSYNSESCNDSSDTSE 228

Query: 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSN 322
           S    +  +     SSD  D+                      ++  KLSS         
Sbjct: 229 SCDKDKVFTNSGESSSDSLDVA---------------------EILRKLSS--------- 258

Query: 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382
                                       K++   E   EA++N KFCV RISK+KSISVD
Sbjct: 259 ----------------------------KFNFPHEKIGEARKN-KFCVARISKTKSISVD 289

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
           FRLSRGI +VNEGKYA AISIFDQILKEDP YPEALIGRGTA AF+REL+AAI+DF++AI
Sbjct: 290 FRLSRGIGEVNEGKYAHAISIFDQILKEDPAYPEALIGRGTAYAFKRELDAAIADFSKAI 349

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + NPSAGEAWKRRGQARAALGE VEAI+DL+ ALEFE NSADILHERGIVNFKFK+F+AA
Sbjct: 350 EFNPSAGEAWKRRGQARAALGEFVEAIEDLTMALEFESNSADILHERGIVNFKFKEFDAA 409

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           VEDLSACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++Q+DRNFLEAW HLTQFYQ
Sbjct: 410 VEDLSACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQIDRNFLEAWAHLTQFYQ 469

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622
           DL+   KA ECL Q+L ID RF++AYHLRGLL H +G+H+KAI DL+  L +D +N+ECL
Sbjct: 470 DLSKPTKAQECLNQMLQIDGRFARAYHLRGLLFHAMGEHRKAISDLTMSLNVDGANVECL 529

Query: 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682
           YLR SCYHA+G Y+EA+KDYDAALDLELDSM+KFVLQCLAFYQKEIALYTASK NSEFCW
Sbjct: 530 YLRGSCYHAVGRYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEIALYTASKFNSEFCW 589

Query: 683 FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLV 742
           FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPP R+SL+KGKLR+Q+  +TKQKTAL+  
Sbjct: 590 FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPFRESLRKGKLRKQELVLTKQKTALIQA 649

Query: 743 ADSIGKKIQYDCPGFLSNRRQ 763
           ADSIGK+IQYDCPGFL N RQ
Sbjct: 650 ADSIGKRIQYDCPGFLPNGRQ 670

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798124|ref|XP_002866946.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata] gi|297312782|gb|EFH43205.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/740 (59%), Positives = 535/740 (72%), Gaps = 80/740 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA+A + R+ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DC
Sbjct: 1   MATATSERVELAKHCSSRNWSKAIRVLDSLLAKQSSILDICNRAFCYNQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY++AL Q+AD+KQ LELEELLT 
Sbjct: 61  DKALLLEPCAIQAFILKGRALLALGRKQEAVLVLEQGYKNALQQTADVKQLLELEELLTD 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
           A++      E D + S      S S    +D+ ++  +NH               S  CS
Sbjct: 121 ARR------EIDATESRQETPASHS--EKSDEKTDKLDNHE--------------SGACS 158

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
                    NG S                H +   RE+ E        SK    S+D S+
Sbjct: 159 ---------NGNS----------------HDHEASRELGEK-------SKIISFSKDTSK 186

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNT 323
            ++QS    D+CNG   K   N + G Q NG++         D+HD L+  S  L D + 
Sbjct: 187 ASKQSDGSSDLCNGSAYKEKENGKCGSQINGSYESCKPCNGSDLHDNLAESSDRLGDLSI 246

Query: 324 NSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383
           N    +K  I  +K S   E+R              +E ++NKK+ + RIS + SISVDF
Sbjct: 247 NG---NKLIIKSSKMSHKAEARC-------------DETRKNKKYTIARISGTHSISVDF 290

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           RLSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQ
Sbjct: 291 RLSRGIAQVNEGNYMKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQ 350

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SNP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV
Sbjct: 351 SNPAATEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAV 410

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           +DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+
Sbjct: 411 KDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQE 470

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
           LA+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLY
Sbjct: 471 LADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLY 529

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF 683
           LR SCYHAIGEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQKE+ALYTASK++SEF  F
Sbjct: 530 LRGSCYHAIGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQKELALYTASKVSSEFLCF 589

Query: 684 DIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVA 743
           DIDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+SLKKGKL++QD ++TKQK  +L  A
Sbjct: 590 DIDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRESLKKGKLKKQDLAITKQKANVLRFA 649

Query: 744 DSIGKKIQYDCPGFLSNRRQ 763
           D IGK+IQYDCPGFL N+RQ
Sbjct: 650 DLIGKRIQYDCPGFLPNKRQ 669

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186517170|ref|NP_195462.3| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332661397|gb|AEE86797.1| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/739 (58%), Positives = 536/739 (72%), Gaps = 73/739 (9%)

Query: 34  ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
           A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4   ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94  KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
           KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64  KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
           +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124 RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214 SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
           S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166 S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
           ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194 SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325 SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
               +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254 G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301 LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361 NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421 DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481 ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684
           R SCYHA+GEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQKE+ALYTASK++SEF  FD
Sbjct: 540 RGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQKELALYTASKVSSEFLCFD 599

Query: 685 IDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVAD 744
           IDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+SLKKGKL++QD ++TKQK  +L  AD
Sbjct: 600 IDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRESLKKGKLKKQDLAITKQKANILRFAD 659

Query: 745 SIGKKIQYDCPGFLSNRRQ 763
            IGK+IQYDCPGFL N+RQ
Sbjct: 660 LIGKRIQYDCPGFLPNKRQ 678

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26449774|dbj|BAC42010.1| unknown protein [Arabidopsis thaliana] gi|29029044|gb|AAO64901.1| At4g37460 [Arabidopsis thaliana]

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/739 (58%), Positives = 536/739 (72%), Gaps = 73/739 (9%)

Query: 34  ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
           A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4   ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94  KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
           KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64  KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
           +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124 RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214 SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
           S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166 S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
           ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194 SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325 SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
               +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254 G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301 LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361 NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421 DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481 ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684
           R SCYHA+GEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQKE+ALYTASK++SEF  FD
Sbjct: 540 RGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQKELALYTASKVSSEFLCFD 599

Query: 685 IDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVAD 744
           IDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+SLKKGKL++QD ++TKQK  +L  AD
Sbjct: 600 IDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRESLKKGKLKKQDLAITKQKANILRFAD 659

Query: 745 SIGKKIQYDCPGFLSNRRQ 763
            IGK+IQYDCPGFL N+RQ
Sbjct: 660 LIGKRIQYDCPGFLPNKRQ 678

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482703|ref|XP_003611638.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512973|gb|AES94596.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/540 (67%), Positives = 442/540 (81%), Gaps = 10/540 (1%)

Query: 231 GSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDK 290
           G S+P +KS    N  L E  E+       +K +  + D SE+  +S+D FD  N    +
Sbjct: 134 GLSIPQAKSDSSSNRNLTETCESQ------AKLSGNTSDKSEVLLKSADKFDARNELNSE 187

Query: 291 ASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF 350
              + +   Q NG+ D+ D L  DS+   D++ + +    +S   + S+D+ E   K SF
Sbjct: 188 GGESSKCDGQVNGSPDIIDNLRYDSS---DTSESCDKVLTNSGESSDSNDAAEILRKPSF 244

Query: 351 KWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE 410
           K+    E S+EA+++KKF V R+SK+KSISVDFRLSRGIA+VNEGKYA AISIFDQILKE
Sbjct: 245 KFTFPSEKSSEARKSKKFSVARVSKTKSISVDFRLSRGIAEVNEGKYAHAISIFDQILKE 304

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+AGEAWKRRGQARAALGE VEAI+
Sbjct: 305 DSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPAAGEAWKRRGQARAALGEFVEAIE 364

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
           DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLSACV+LD++NKSAYTYLGLALSSI
Sbjct: 365 DLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLSACVQLDRDNKSAYTYLGLALSSI 424

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           GEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+   KALECL QVL ID RF++AYHL
Sbjct: 425 GEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKPTKALECLTQVLQIDGRFARAYHL 484

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
           RG+L H +G+H+KAIKDL++GL ID +NIE LYLRA+CYHA+G+Y+EA+KDYDAALDLEL
Sbjct: 485 RGVLFHAMGEHRKAIKDLTTGLSIDGANIESLYLRAACYHAVGQYKEAVKDYDAALDLEL 544

Query: 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKV 710
           DSM+KFVLQCLAFYQKEI LYTASK NSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKV
Sbjct: 545 DSMDKFVLQCLAFYQKEITLYTASKFNSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKV 604

Query: 711 YRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQTYNLSHF 770
           +RQPPLR+SL+KGKLR+Q+ ++TKQK+AL+  ADSIG+KIQYDCPGFL NRRQ + +S F
Sbjct: 605 FRQPPLRESLRKGKLRKQELTLTKQKSALIQAADSIGQKIQYDCPGFLPNRRQ-HRMSGF 663

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	781
TAIR|locus:2126347	1052	SRFR1 "SUPPRESSOR OF RPS4-RLD	0.517	0.384	0.728	2.6e-206
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.477	0.451	0.288	1.6e-33
DICTYBASE|DDB_G0272186	1050	DDB_G0272186 "TPR_1 repeat-con	0.285	0.212	0.290	3.9e-28
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.285	0.838	0.271	1.3e-14
TIGR_CMR|GSU_1166	266	GSU_1166 "TPR domain protein"	0.285	0.838	0.271	1.3e-14
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.345	0.450	0.224	3.6e-12
UNIPROTKB|P72802	266	mom72 "Mitochondrial outer mem	0.233	0.684	0.279	1e-11
RGD|1303049	610	Tomm70a "translocase of outer	0.355	0.455	0.223	2.9e-11
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.355	0.454	0.223	2.9e-11
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.230	0.332	0.247	1e-10

TAIR|locus:2126347 SRFR1 "SUPPRESSOR OF RPS4-RLD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1574 (559.1 bits), Expect = 2.6e-206, Sum P(2) = 2.6e-206
 Identities = 295/405 (72%), Positives = 350/405 (86%)

Query:   359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL 418
             S+E+++NKK+ + RIS + SISVDFRLSRGIAQVNEG Y  AISIFD++LKE+P YPEAL
Sbjct:   275 SDESRKNKKYTIARISGTHSISVDFRLSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEAL 334

Query:   419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
             IGRGTA AFQRELE+AI+DFT+AIQSNP+A EAWKRRGQARAALGE VEA++DL+KAL F
Sbjct:   335 IGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVEDLTKALVF 394

Query:   479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             EPNS D+LHERGIVNFK KDF AAV+DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEE
Sbjct:   395 EPNSPDVLHERGIVNFKSKDFTAAVKDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEE 454

Query:   539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXX 598
             AHLK+IQLD N+LEAW HL QFYQ+LA+  KALEC++QVL +D R  KAY          
Sbjct:   455 AHLKSIQLDSNYLEAWLHLAQFYQELADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGL 514

Query:   599 XXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                +KAI++LS GL I+ + IECLYLR SCYHA+GEYR+A+KDYDA +D+ELD++EKFVL
Sbjct:   515 GEHRKAIQELSIGLSIE-NTIECLYLRGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVL 573

Query:   659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRD 718
             QCLAFYQKE+ALYTASK++SEF  FDIDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+
Sbjct:   574 QCLAFYQKELALYTASKVSSEFLCFDIDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRE 633

Query:   719 SLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQ 763
             SLKKGKL++QD ++TKQK  +L  AD IGK+IQYDCPGFL N+RQ
Sbjct:   634 SLKKGKLKKQDLAITKQKANILRFADLIGKRIQYDCPGFLPNKRQ 678

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 395 (144.1 bits), Expect = 1.6e-33, P = 1.6e-33
 Identities = 111/385 (28%), Positives = 190/385 (49%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAFQ--RELEAAISDFT 439
             L+ G   +  G Y  AI  F  +L+ DP    A+ GRG A   ++ Q  +  + A+ + +
Sbjct:   113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELS 172

Query:   440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
               I   P+  E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+
Sbjct:   173 RVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDY 231

Query:   500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              AA+ED    ++L K    A  Y GL     G  K+A E   +A++L  +F++A+  L Q
Sbjct:   232 MAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQ 291

Query:   560 FYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNI 619
              Y++L + E A+E  Q+ L +D+   ++              ++AI +    L ++P N 
Sbjct:   292 AYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNE 351

Query:   620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF-YQKEIALYTASKINS 678
              C Y++   + A+G++ E IK     +  +    +K   + L   Y +E + Y  S ++ 
Sbjct:   352 VCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLLGQKASSEYLKVKYLREYSRYLHSHLDV 411

Query:   679 EFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQD-FSVTKQKT 737
                 +++D D+   FK +W K L P  + E    QP L+  +K    +  D +S   QK 
Sbjct:   412 PVAEYNVDQDLPGNFKNHWAKNL-PFLI-EDYEEQPGLQPHIKDVLPQNFDSYSAEVQK- 468

Query:   738 ALLLVADSIGKKIQYDCPGFLSNRR 762
              L+  AD +G  +QYD  GFL N R
Sbjct:   469 -LICTADHLGALMQYDTSGFLPNLR 492

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0272186 DDB_G0272186 "TPR_1 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 306 (112.8 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
 Identities = 65/224 (29%), Positives = 125/224 (55%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             +S+G   VN G+Y  AI +F  I+  +P+ P   +GRGT+ AF  +L  AI+DF+ AI+ 
Sbjct:   291 ISQGNTFVNAGQYEEAIELFTMIIDNNPLVPSLYLGRGTSNAFLGQLNEAINDFSRAIEL 350

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAV 503
             + ++ +A+KRRGQ++ A     EA++D ++A+ F+  +  DI + RG+++++ +++  A+
Sbjct:   351 DNTSSDAYKRRGQSKVAKSMEQEALEDFNQAVAFDKEDDYDIYYNRGLLHYQMRNYERAL 410

Query:   504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             +D      ++  +K A+  +GL L+  G   +A +A  +A+++D  F  +  ++ Q ++D
Sbjct:   411 KDFKKVTSIEPSHKLAWNRIGLCLNVNGYPMEAYQAFTEALRIDPYFEASHTNIGQCWKD 470

Query:   564 LANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
             L   + + +   + L I   +S A                AIKD
Sbjct:   471 LGKFDPSYQSFTKALEICPNYSNALHLRGLLFFNSGRHLDAIKD 514

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 65/289 (22%), Positives = 116/289 (40%)

Query:   369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDP---MYPEALIGRGTA 424
             C   I        +  L R    +  G   +A    DQ++  ED    +   ALI RG+ 
Sbjct:   308 CTKEIEAKGKYMAEALLLRATFYLLIGNANAAKPDLDQVISMEDANVKLRANALIKRGSM 367

Query:   425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                Q++   +  DF  A   +P   + +  RGQ +  L +  EA++D  + +   P+SA 
Sbjct:   368 YMQQQQPALSTQDFNMAADIDPQNADVYHHRGQLKILLDQIEEAVEDFDECIRLRPDSAL 427

Query:   485 ILHERGIVNFK--FKDFN-----AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
                ++    ++  +   N      A++     +K   +    Y     AL+   ++ KA+
Sbjct:   428 AQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKFPKCAEGYALYAQALTDQQQFGKAD 487

Query:   538 EAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXX 593
             E + K I L+ +    + H      Q+ QDL   +K LE + + + ID +   AY     
Sbjct:   488 EMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDNKCDFAYETMGT 544

Query:   594 XXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                      KAI+  +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 IEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAYAQ-TEVAKKY 592

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P72802 mom72 "Mitochondrial outer membrane 72K protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 182 (69.1 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 52/186 (27%), Positives = 96/186 (51%)

Query:   388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
             G+ ++    ++ AI+ F + +K +    +A   RG A+    + +AAI+D+ +AI  NP 
Sbjct:    49 GVDKLAAQNFSGAIADFTESIKLNDQDADAYYNRGYAKHVLGQYQAAITDYNQAISLNPE 108

Query:   448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
                A   R  A   L +  +AIQD S A+E  PN AD    RG    +  +   A+ D +
Sbjct:   109 FAYALGNRCYAYFLLSQYDKAIQDCSNAIEINPNYADFYVYRGNSQSQLGNETTAIADYN 168

Query:   508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH--LTQFYQDLA 565
               ++++ ++ +AY    L  + + + ++A   + ++IQLD +  EA+ +  LTQ+   L 
Sbjct:   169 DAIRINAQHANAYYNRALTHNRLKQDQQALADYNQSIQLDPDSAEAYFNRGLTQYR--LG 226

Query:   566 NSEKAL 571
             +  KA+
Sbjct:   227 DEPKAI 232

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   315 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 367

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   368 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 427

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   428 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKFPRCAEGYALYAQA 487

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   488 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 544

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 603

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   316 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 368

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   369 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 428

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   429 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRCAEGYALYAQA 488

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   489 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 545

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   546 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 604

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 48/194 (24%), Positives = 85/194 (43%)

Query:   366 KKFCVTRISKSKSISVDFR-LSRGIAQVNEG-----KYASAISIFDQILKEDPMYPEALI 419
             ++ C   I   +    D+R +++  A++        KY  A+  F++ L E    P+ L 
Sbjct:   278 RELCEKAIDVGRENREDYRQIAKAYARIGNSYFKQEKYKEAVQFFNKSLTEHRT-PDVL- 335

Query:   420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  +  Q E E  + +  +    NP      K +G      G+   A++  S+A++  
Sbjct:   336 -----KKCQ-EAEKILKEQEKVAYINPDLALEEKNKGNDAFQKGDYPLAMKHYSEAIKRN 389

Query:   480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             P  A +   R     K  +F  A++D   C+ LD      YT  G AL ++ ++ KA + 
Sbjct:   390 PYDAKLFSNRAACYTKLLEFQLALKDCEECINLDSTFIKGYTRKGAALEAMKDFSKAMDV 449

Query:   540 HLKAIQLDRNFLEA 553
             + KA++LD N  EA
Sbjct:   450 YQKALELDSNSKEA 463

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_700334.1	annotation not avaliable (1043 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__1942__AT4G23570.3	annotation not avaliable (351 aa)					•		•		0.701

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	781
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	9e-19
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-16
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-16
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-13
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-13
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-07
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	8e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	6e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	8e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	8e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-04
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	2e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	6e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	7e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	7e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	9e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.003
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.004
PRK09782	987	PRK09782, PRK09782, bacteriophage N4 receptor, out	0.004

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 87.2 bits (214), Expect = 9e-19
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTAR-AFQRELEAAISDFTEAIQSNPSAGEA- 451
                 A++I  + L +      AL+  G A      EL  A+    EA++  P++  A 
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 452 -WKRRGQARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSA 508
                  A   LG   EA++ L KALE E  PN A+ L   G++      +  A+E L  
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 509 CVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLD---RNFLEAWGHLTQFYQDL 564
            + LD +   A   L L AL  +G+Y++A E + KA++LD       EA   L    + L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 565 ANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
              E+ALE L++ L ++    ++A    GLL   LG++++A++     L +DP N E LY
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
             A     +G Y EA++  + AL+L+ D     +   L   +    L  A
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKA 290

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EA    G     LG+  EA++   KALE +P++AD  +      +K   +  A+ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LD +N  AY  LGLA   +G+Y++A EA+ KA++LD N
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 84.8 bits (210), Expect = 7e-17
 Identities = 62/273 (22%), Positives = 112/273 (41%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           S+  +L      + E ++  A ++ D++L  DP   +AL+ +G        +E A++ + 
Sbjct: 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +AI   P+               GE  EA +     L+  PNS    + + +V+F+ K++
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A E L   +K   E   A    G +   +G  ++A +   + ++   N  +A   L  
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
               L   ++A+  L   L +D     A  L G     LG  +KA + L+    +DP N 
Sbjct: 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
                      + G+  EAI D + A  L+ + 
Sbjct: 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 32/99 (32%), Positives = 57/99 (57%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A   LG     +G+Y +A E + KA++LD +  +A+ +L   Y  L   E+ALE  ++ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +D   +KAY+  GL  + LG++++A++     L +DP+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 84.4 bits (209), Expect = 1e-16
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 4/261 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+A +  G+   A   ++Q L  DP    A +G       +   + A +   E + ++P
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A   +G    +LG    A+    KA+   PN+  +L     +  +  +F  A +  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
            A +K    +  A+    L       Y+ A E    A++    +L A      +++   L
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L 308

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N E+A + L Q+L       +A  L   +   LG+  +AI  LS  LG+DP +   L L
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 625 RASCYHAIGEYREAIKDYDAA 645
               Y A+G++ +A +    A
Sbjct: 369 LGEAYLALGDFEKAAEYLAKA 389

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.0 bits (182), Expect = 5e-16
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EA  +L   Y  L + ++ALE  ++ L +D   + AY+      + LG++++A++D    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L +DP N +  Y     Y+ +G+Y EA++ Y+ AL+L+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 78.6 bits (194), Expect = 6e-15
 Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 5/255 (1%)

Query: 415 PEALIGRGTARAFQRELE--AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           PE LI    A+++ ++ +  AAI     A+Q +P+  EA    G+   ALG+   A ++L
Sbjct: 22  PEELIEA--AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKEL 79

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIG 531
            KAL        +L            F   +++L     LD E  +      GLA   +G
Sbjct: 80  RKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           + + A++++ +A+ +D   L A   L Q        ++A   + +VL  D     A  L+
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
           G LL  LG  + A+      + + P+NI  L   A+     GE+ EA K  DA L    +
Sbjct: 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN 259

Query: 652 SMEKFVLQCLAFYQK 666
           S     L+ L  +QK
Sbjct: 260 SPLAHYLKALVDFQK 274

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
           + L   G + +K  D++ A+E     ++LD +N  AY  L  A   +G+Y++A E + KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           ++LD +  +A+ +L   Y  L   E+ALE  ++ L +D 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 75.5 bits (186), Expect = 6e-14
 Identities = 66/259 (25%), Positives = 101/259 (38%), Gaps = 20/259 (7%)

Query: 404 FDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           F Q+L E        D    E L  RG A     +LE A   + +A+  +P +  A    
Sbjct: 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            Q   A     EA   + + L  +P + D L  +G +     +   A+      + L   
Sbjct: 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEK 569
           N +    L   L   GE+++A E H  A+          ++L+A   L  F +   N E 
Sbjct: 226 NIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKA---LVDFQKK--NYED 279

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A E LQ  L     +  A  L G   + LG  ++A + L+  L   P++ +   L AS  
Sbjct: 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

Query: 630 HAIGEYREAIKDYDAALDL 648
             +G   EAI     AL L
Sbjct: 340 LRLGRVDEAIATLSPALGL 358

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+ G      G Y  A+  +++ L+ DP   +A      A     + E A+ D+ +A++ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +P   +A+   G A   LG+  EA++   KALE +PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 73.6 bits (181), Expect = 3e-13
 Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 42/310 (13%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G A +  G +  A     +  + DP    A    G ++  Q +   AI+D   A Q +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 448 AGEA-------WKRRGQARAAL---------------------------GESVEAIQDLS 473
            G A       + R GQ   AL                           G+  +A +   
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KAL  EP+          ++ +  + + A++     + +D +N  A     LAL+ +   
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI----LALAGLYLR 545

Query: 534 KKAEEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
              EE  +    KA +L+   +E    L Q+Y      +KAL  L +         +A+ 
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + G      G   KA+      L + P +   L L A  Y  +  Y +AI     AL+L+
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

Query: 650 LDSMEKFVLQ 659
            D+ E  +  
Sbjct: 666 PDNTEAQIGL 675

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 96/420 (22%), Positives = 160/420 (38%), Gaps = 75/420 (17%)

Query: 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD--NKSSDSTESRSK 347
           K  ++++  R+        +  + +  S    N   E   +    D  + ++ S E R K
Sbjct: 66  KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125

Query: 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407
            + K   LKE  N+A RNK F       +K+I +               Y+ AI      
Sbjct: 126 YAAK---LKEKGNKAYRNKDF-------NKAIKL---------------YSKAI-----E 155

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467
            K DP+Y         A     + E  + D T A++ +P   +A  RR  A   LG+  +
Sbjct: 156 CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212

Query: 468 AIQDLSKAL---EFEPNSADILHERGIVNF-------KFKDFNAAV-------------- 503
           A+ DL+ +     F    +    ER +  F         +     +              
Sbjct: 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272

Query: 504 -----EDLSACVKLDKENKSAYTYLGLAL--SSIGE-YKKAEEAHLKAIQLDRNFL---E 552
                  L    +LD+E  +    LGL    S   E Y++A  A  K   LD   L   E
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLGKLGEKE 330

Query: 553 AWGH-LTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           A    L   ++ L     +AL  L + + +D R +++Y  R  +   LG   KA +D   
Sbjct: 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV-LQCLAFYQKEIA 669
            L ++  + +  Y RA  +   GE+ +A KDY  ++DL+ D +   + L    + +  IA
Sbjct: 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           EAL+  G       + + A+  + +A++ +P   +A+     A   LG+  EA++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           LE +P++A   +  G+  +K   +  A+E     ++LD  
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 71.7 bits (176), Expect = 9e-13
 Identities = 53/302 (17%), Positives = 104/302 (34%), Gaps = 10/302 (3%)

Query: 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
           +S     S +  +    + + + KY +AI      L++DP   EA    G       +  
Sbjct: 14  LSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA 73

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEF--EPNSADILHER 489
           AA  +  +A+       +       ARA L +   + + D         +  +A++L  R
Sbjct: 74  AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALR 131

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLD 547
           G+          A +       L  + +S Y  LGLA    +   + +A     + +  D
Sbjct: 132 GLAYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              ++A          L N E AL   ++ + +             +L   G+ ++A K 
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-KFVLQCLAFYQK 666
             + L   P++    YL+A        Y +A +    AL    + +    +     +   
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309

Query: 667 EI 668
            +
Sbjct: 310 NL 311

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 61.8 bits (148), Expect = 3e-10
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG-TARAFQRELEAAISDFTEAIQ 443
           L+ G+     GKY  A+ + ++ L  DP    A       A     + E A+  + +A++
Sbjct: 99  LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158

Query: 444 SNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDF 499
            +P      EA    G    ALG   EA++ L KAL+  P+  A+ L   G++  K   +
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             A+E     ++LD +N  A   L L L  +G Y++A EA  KA++LD +   
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYN 271

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-YREAIKDYD 643
           ++A    G  L  LG + +AI+     L +DP N E  Y  A  Y  +G+ Y EA++D +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 644 AALDL 648
            AL+L
Sbjct: 63  KALEL 67

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 61.6 bits (150), Expect = 1e-09
 Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 33/291 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           EG    AI  F+++L  DP    A++            E A++   +A + NP   E   
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q     G+  +A+  L++A +  P+S +     G       D N AV      + L 
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            ++  A   L  A + +  Y KA  +  +A++L  +  EA   L Q       +E A + 
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691

Query: 574 LQQV----------------LYI-DKR-------FSKAYHLRG-----LLLH----GLGQ 600
            + +                LY+  K        + KA          + LH      G 
Sbjct: 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
             +A+K L + L   P++       A  Y A  +Y +AIK Y   +    D
Sbjct: 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 62/308 (20%), Positives = 110/308 (35%), Gaps = 38/308 (12%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           VD  L +G   ++ G    A++ + + +   P     L+   T      E E A      
Sbjct: 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
            ++  P++  A   +           +A + L  AL+  P     L   G   ++  +  
Sbjct: 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 501 AAVEDLSACVK----------------------------------LDKENKSAYTYLGLA 526
            A + L+  +K                                  LD ++ +A + LG A
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
             ++G+++KA E   KA +LD     A   L        +  +A+  L+    +D    +
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432

Query: 587 AYHLRGLLLHGL--GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           A  L  L+L  L  GQ  KA+          P N     L  + Y   G+  +A + ++ 
Sbjct: 433 ADLL--LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490

Query: 645 ALDLELDS 652
           AL +E D 
Sbjct: 491 ALSIEPDF 498

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 58.1 bits (140), Expect = 1e-08
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           Y  A   F++ L    +  +  I    RGT +  + +   A++D +++I+ +P   +++ 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           +R      LG+  +A +D  KAL+      DI + R  ++F   +F  A +D    + LD
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
            +   ++  LG+     G    +     +     +NF EA
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEA 466

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEA 539
           ++A+ L   G   FK  D++ A+E     ++LD +N  AY  L LA   +G+ Y++A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 540 HLKAIQLD 547
             KA++LD
Sbjct: 61  LEKALELD 68

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           +A    G L + LG + +A++     L +DP N +  Y  A+ Y+ +G+Y EA++DY+ A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 646 LDLELDS 652
           L+L+ D+
Sbjct: 61  LELDPDN 67

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDFNAAVEDLSA 508
           EA K  G A   LG+  EAI+   KALE +P++A+  +   +   K  KD+  A+EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 509 CVKLDK 514
            ++LD 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 22/262 (8%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            YA AI+   + L+  P   EA IG        +  E+A        + +P A   ++  
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G       +   AIQ   KAL+  P+S + +     +     +   AV+ L A +K    
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTHPN 768

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +    T L     +  +Y KA + +   ++   +      +L   Y +L +  +ALE  +
Sbjct: 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAE 827

Query: 576 QVLYIDKRFSKAYHLR----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
                     +A  L           G LL   G+  +A+  L   + I P      Y  
Sbjct: 828 ----------RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

Query: 626 ASCYHAIGEYREAIKDYDAALD 647
           A    A G   EA K+ D  L+
Sbjct: 878 ALALLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473
            EAL   G A     + + AI  + +A++ +P   EA+     A   LG+   EA++DL 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 474 KALEFEP 480
           KALE +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 52.3 bits (125), Expect = 8e-07
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG  +  +GK+  A++   + ++ DP   ++ I R +      + + A  DF +A++ N 
Sbjct: 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +  R Q     GE  +A +D  K+++ +P+      + G+  +K     +++   
Sbjct: 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGH--- 556
             C K   E    Y Y G  L    ++ +A E    AI+L++       N L        
Sbjct: 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           L Q+ QD   +E   E   + L ID     A
Sbjct: 517 LFQWKQDFIEAENLCE---KALIIDPECDIA 544

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 35/148 (23%), Positives = 56/148 (37%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A    G   S++++  +     P   E L  +G  +        A+S   +A +  P+  
Sbjct: 75  ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A   LG   EA +   +ALE  PN   I +  G+      D   A   L   
Sbjct: 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAE 537
                 +      L L +   G++++AE
Sbjct: 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            N A  Y +L  ++  + D +KAL+LDP   +AY   G A+  LG+ EEAL  +EK  E 
Sbjct: 38  YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 369 CVT--RISKSKSISV--DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424
           CVT    S+    +     RL   +  + +G YA A    ++ L+ DP Y  A + R   
Sbjct: 19  CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY 78

Query: 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNS 482
                E + A   + +A+   P+ G+     G    A G   EA+Q   +AL        
Sbjct: 79  YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
           +D L   G+   K   F+ A E L   ++LD +       L LA         A 
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAP 191

Length = 250

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTE 440
           +   + G A    G Y  AI  +++ L+ DP   EA      A     +  E A+ D  +
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 441 AIQSNP 446
           A++ +P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL--- 486
           E+EA I+     +Q NP   E W   G+A  ALG + +A+     AL    ++ +IL   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196

Query: 487 ------HERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
                      +  K +     A       + LD  N  A + L  A    G+Y +A
Sbjct: 197 AEALYYQAGQQMTAKARALLRQA-------LALDPANIRALSLLAFAAFEQGDYAEA 246

Length = 287

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------- 549
           D   A E+L   ++ D ++  AY  L L    +GE +KAE++  +A+ L+ N        
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

Query: 550 --FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             FL   G   Q  Q     E+A+E     LY   + +++    GL     G   KA K 
Sbjct: 106 GTFLCQQGKYEQAMQQF---EQAIE---DPLY--PQPARSLENAGLCALKAGDFDKAEKY 157

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           L+  L IDP   E L   A  Y+  G+Y++A    +        + E   L 
Sbjct: 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
              A     + + A++    A+   P A EA    G+A    G   EA   L  AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 481 NSA 483
           +  
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           + D   +   A    GKY  A+  +++ L+ DP   +A    G A     + E A+  + 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Query: 440 EAIQSNPS 447
           +A++ +P+
Sbjct: 93  KALELDPN 100

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+   A +  G Y  A++  +  L   P+  EAL+  G A   Q  L  A +    A+ +
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 445 NPSA 448
           +P  
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALEC 573
           +N  A   LG AL  +G+Y +A EA+ KA++LD +  EA+ +L   Y  L  + E+ALE 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 574 LQQVLYIDK 582
           L++ L +D 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+   ++A++ +PN+A++  +R   N K  +F  AV D +  ++LD     AY   G A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 528 SSIGEYKKAEEA 539
             + EY+ A+ A
Sbjct: 81  MKLEEYQTAKAA 92

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSS 610
           EA  +L      L + ++A+E  ++ L +D   ++AY+   L    LG  +++A++DL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 611 GLGIDP 616
            L +DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +A     ++ A ++   AA +     ++ NP      K         G++  ++  L K
Sbjct: 34  AKATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYLR-GDADSSLAVLQK 91

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +    P   ++L  +G    +  +F  AV  L    +L   +  A+  LG AL  +G + 
Sbjct: 92  SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151

Query: 535 KAEEAHLKAIQLDRN 549
           +A  A+ +A++L  N
Sbjct: 152 EARRAYRQALELAPN 166

Length = 257

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 18/58 (31%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   G + +A+  L + L   P   E L L        G   EA     AAL  
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Length = 65

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +T+AI  +P+  E +  R QA   LG   EA+ D +KA+E +P+ A     +G 
Sbjct: 19  ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78

Query: 492 VNFKFKDFNAA 502
              K +++  A
Sbjct: 79  ACMKLEEYQTA 89

Length = 356

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+   +++L +      AY L        GQ+K+A + L   L +D S+  C YL A 
Sbjct: 6   ENAIFLAEKLLALTPSNEDAYLL-AQCYFLQGQYKRAYELLRK-LKLDNSS-GCRYLLAQ 62

Query: 628 CYHAIGEYREAIKDYDAA 645
           C   +G+Y EAI   + A
Sbjct: 63  CLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 394 EGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--- 447
            G YA AI  F   LK   +    P A    G A   Q +   A   F   ++  P    
Sbjct: 13  AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPK 72

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A +A  + G +   LG+  +A   L + ++  P S+
Sbjct: 73  APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKA 570
           +A   L L L  +G+Y +A E   KA++L R           A  +L + Y  L + ++A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 571 LECLQQVL 578
           LE L++ L
Sbjct: 66  LEYLEKAL 73

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++L+ N 
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           RG    +LG    A  D S+AL   P+  ++ +  GI   +  +F+AA E   + ++LD 
Sbjct: 71  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
               A+   G+AL   G YK A++  L   Q D N  F   W +L +  Q L + ++A  
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE--QKL-DPKQAKT 187

Query: 573 CLQQ 576
            L+Q
Sbjct: 188 NLKQ 191

Length = 297

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +A    G A   LG+  EA++   KALE  PN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 532 EYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDLA-------NSEKALECLQQVLYIDK 582
           E++KA +    L  +      +E    + QFY +LA       + ++A E L++ L  DK
Sbjct: 156 EWEKAIDVAERLVKLGGQTYRVE----IAQFYCELAQQALASSDVDRARELLKKALQADK 211

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAI 639
           +  +A  + G +    G ++KA++ L   L  +P  + E L +   CY  +G+  E +
Sbjct: 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269

Length = 389

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
                  A  GR        + + A+      I + P      +  G       ++ EAI
Sbjct: 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           + L KAL  +PNS  +         K      A+  L+  +  D E+ + +  L  A + 
Sbjct: 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Query: 530 IGEYKKAEEA 539
           +G   +A  A
Sbjct: 421 LGNRAEALLA 430

Length = 484

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAI 639
           A +   L+L  LG + +A++ L   L +        P     L   A  Y A+G+Y EA+
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 640 KDYDAALDL 648
           +  + AL L
Sbjct: 67  EYLEKALAL 75

Length = 78

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 9e-04
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A  NE ++  A+ ++ ++L+ DP  P+ L+G     A   +   A+    E +   P+  
Sbjct: 95  AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
             ++       A  + ++A+Q   +AL  EP++ +   E 
Sbjct: 155 ARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALEL 194

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A +  G  A A+   +  LK  P               Q++ + AI  +   ++  P   
Sbjct: 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

Query: 450 E-----AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                 AW               A++   +AL+  PN   IL   G +  +  + + A+ 
Sbjct: 805 VVLNNLAWLYLELKDP------RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
            L   V +  E  +   +L LAL + G   +A
Sbjct: 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            + LY   + Y  +G+Y EA++ Y+ AL+L 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELN 31

Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/165 (21%), Positives = 59/165 (35%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            RA    L    +    A +S      A   R       G+  EA++ L   +  +P++ 
Sbjct: 281 IRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP 340

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
             L   G +  +      A+E L   + LD  +      L  AL   G+ ++A     + 
Sbjct: 341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
           +  D      W  L Q Y +L N  +AL    +   +  R  +A 
Sbjct: 401 LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            E LY   + Y  +G+Y EA++ Y+ AL+L+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 46/220 (20%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDF 438
              R+   +  + +G    A    D+ L+ DP    A +    A  +Q+  ELE A   F
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL--ALYYQQLGELEKAEDSF 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
             A+  NP+ G+     G      G+  +A+Q                            
Sbjct: 89  RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ---------------------------Q 121

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
           F  A+ED      L  +   +    GL     G++ KAE+   +A+Q+D    E+   L 
Sbjct: 122 FEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176

Query: 559 QFYQDLANSEKALECLQQV----------LYIDKRFSKAY 588
           + Y      + A   L++           L++  R ++A 
Sbjct: 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++LD N 
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           + + N    Y +L  +   +   +KAL+LDP    AY     A+  LG+ EEAL  +EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 130 YEHA 133
            E  
Sbjct: 61  LELD 64

Length = 100

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 545 QLDRNFLEA-WGHLTQFYQ--DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            LD   LE  +      YQ      + K  + L      + R+             L ++
Sbjct: 11  GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL---AACCQMLKEY 67

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++AI   +    +DP +    +  A C  A+GE   A+K  D A+++
Sbjct: 68  EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
           +A A+ ++ Q +  DP   E    R  A         A++D  +AI+ +PS  +A+ R+G
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 457 QARAALGESVEAIQDLSKALEFEPNS---ADILHE 488
            A   L E   A   L K     P       ++ E
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112

Length = 356

>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane subunit; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
            R    + E A++D T ++   PSA     R    R        A+ DL  ALE EPN
Sbjct: 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQR-HNVPAAVSDLRAALELEPN 641

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	781
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.98
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.92
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.92
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.92
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG2003	840	consensus TPR repeat-containing protein [General f	99.91
KOG2076	895	consensus RNA polymerase III transcription factor	99.9
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
PRK12370	553	invasion protein regulator; Provisional	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.86
KOG1129	478	consensus TPR repeat-containing protein [General f	99.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.86
PRK12370	553	invasion protein regulator; Provisional	99.85
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.85
KOG1125	579	consensus TPR repeat-containing protein [General f	99.85
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.85
KOG1129	478	consensus TPR repeat-containing protein [General f	99.84
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.84
PRK11189	296	lipoprotein NlpI; Provisional	99.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.83
KOG1125	579	consensus TPR repeat-containing protein [General f	99.82
PRK11189	296	lipoprotein NlpI; Provisional	99.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.81
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.81
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
PLN03218	1060	maturation of RBCL 1; Provisional	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
PLN02789	320	farnesyltranstransferase	99.79
PLN02789	320	farnesyltranstransferase	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.78
KOG0553	304	consensus TPR repeat-containing protein [General f	99.78
PLN03077	857	Protein ECB2; Provisional	99.78
PLN03218	1060	maturation of RBCL 1; Provisional	99.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.76
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.74
PLN03077	857	Protein ECB2; Provisional	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.73
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.67
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.63
KOG4234	271	consensus TPR repeat-containing protein [General f	99.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.54
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.52
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.52
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.47
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.44
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.43
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.39
PRK04841	903	transcriptional regulator MalT; Provisional	99.37
PRK04841	903	transcriptional regulator MalT; Provisional	99.35
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.35
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.33
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.31
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.31
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.28
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.27
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.24
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.19
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.17
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.17
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.1
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.06
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.94
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.94
PRK11906	458	transcriptional regulator; Provisional	98.94
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.93
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.92
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.92
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.9
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.89
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.89
PRK15331	165	chaperone protein SicA; Provisional	98.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.86
PRK11906	458	transcriptional regulator; Provisional	98.86
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.86
KOG4555	175	consensus TPR repeat-containing protein [Function	98.85
PRK15331	165	chaperone protein SicA; Provisional	98.84
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.83
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.8
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.77
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.76
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.75
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.74
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.73
PRK10803	263	tol-pal system protein YbgF; Provisional	98.7
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.7
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.64
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.58
PF12688	120	TPR_5: Tetratrico peptide repeat	98.57
PF13371	73	TPR_9: Tetratricopeptide repeat	98.57
PF12688	120	TPR_5: Tetratrico peptide repeat	98.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
KOG2471	696	consensus TPR repeat-containing protein [General f	98.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.53
KOG2471	696	consensus TPR repeat-containing protein [General f	98.53
PF13371	73	TPR_9: Tetratricopeptide repeat	98.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.52
PF13512	142	TPR_18: Tetratricopeptide repeat	98.5
KOG4234	271	consensus TPR repeat-containing protein [General f	98.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.5
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.47
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.42
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.4
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.37
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.36
KOG1586	288	consensus Protein required for fusion of vesicles	98.36
KOG1586	288	consensus Protein required for fusion of vesicles	98.34
PF13512	142	TPR_18: Tetratricopeptide repeat	98.34
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.27
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.26
KOG4555	175	consensus TPR repeat-containing protein [Function	98.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.21
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.1
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.07
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.05
KOG1310	758	consensus WD40 repeat protein [General function pr	98.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.02
KOG1585	308	consensus Protein required for fusion of vesicles	98.0
KOG1258	577	consensus mRNA processing protein [RNA processing	97.98
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.96
KOG1585	308	consensus Protein required for fusion of vesicles	97.96
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.94
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.94
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.92
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.82
PF13428	44	TPR_14: Tetratricopeptide repeat	97.81
PF13428	44	TPR_14: Tetratricopeptide repeat	97.81
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.79
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.76
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.74
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.71
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.7
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.68
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.68
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.63
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.59
PF13431	34	TPR_17: Tetratricopeptide repeat	97.58
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.58
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.54
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.52
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.45
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.45
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.43
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.38
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.33
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.3
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.29
KOG1258	577	consensus mRNA processing protein [RNA processing	97.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.26
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.25
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.21
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.18
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.16
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.1
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.08
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.08
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.0
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.91
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.9
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.84
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.77
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.7
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.7
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.68
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.67
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.66
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.53
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.5
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.48
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.48
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.4
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.25
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.25
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.15
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.06
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.05
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.93
PRK10941	269	hypothetical protein; Provisional	95.89
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.78
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.76
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.69
PRK10941	269	hypothetical protein; Provisional	95.68
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.65
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.59
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.58
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.55
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.37
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.29
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.27
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.13
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.13
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.92
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.85
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.83
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.75
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.53
PRK11619	644	lytic murein transglycosylase; Provisional	94.51
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.46
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.31
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.13
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.95
KOG3364	149	consensus Membrane protein involved in organellar	93.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.74
KOG1310	758	consensus WD40 repeat protein [General function pr	93.6
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.47
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.44
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.36
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.34
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.17
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.14
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.04
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.82
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.78
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.74
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.71
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.62
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.48
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.3
KOG1463	411	consensus 26S proteasome regulatory complex, subun	92.25
KOG3364	149	consensus Membrane protein involved in organellar	92.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.11
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.01
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.0
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.94
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.83
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.63
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.46
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.53
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.13
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.43
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.0
KOG1463	411	consensus 26S proteasome regulatory complex, subun	88.8
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	88.6
COG2912	269	Uncharacterized conserved protein [Function unknow	88.51
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.24
COG2912	269	Uncharacterized conserved protein [Function unknow	88.24
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.72
KOG2581	493	consensus 26S proteasome regulatory complex, subun	87.66
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.52
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.52
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.22
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.48
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.43
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	86.07
COG3947	361	Response regulator containing CheY-like receiver a	85.9
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.1
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.04
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.96
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.69
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.06
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.86
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	83.46
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.12
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.59
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	81.04
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	80.57

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-45  Score=365.05  Aligned_cols=287  Identities=23%  Similarity=0.288  Sum_probs=216.3

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      ++.+.+...|.-+-+|..+|-.+..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.+|.+++.+.|++
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~  285 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH  285 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence            44555556666666777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      ..++-++|.+|..+|..+-|+..|+++++..|+.++++.++|..+-..|+..+|..+|.+++.+.|+.+++..++|.++.
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (781)
                      ++|.+++|...|.++++..|....+..++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      .+++..+|..++++.++|.+|...|+..+|+..|++++++.||.+++
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence            77777777777777777777777777777777777777777777773

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-43  Score=355.34  Aligned_cols=409  Identities=20%  Similarity=0.222  Sum_probs=377.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHH
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  120 (781)
                      -.+-+|+-.+++..+..-..+|.++ .-..+|+|.|.++-..|++.+|+..++.+|+++|++++||+.+|.++...|+.+
T Consensus        88 l~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~  167 (966)
T KOG4626|consen   88 LSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE  167 (966)
T ss_pred             ehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence            3455788889999999888899999 556679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCccccc
Q 003991          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (781)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (781)
                      .|...|..|              ++++|.+--                                                
T Consensus       168 ~a~~~~~~a--------------lqlnP~l~c------------------------------------------------  185 (966)
T KOG4626|consen  168 LAVQCFFEA--------------LQLNPDLYC------------------------------------------------  185 (966)
T ss_pred             ccHHHHHHH--------------HhcCcchhh------------------------------------------------
Confidence            999999999              333333221                                                


Q ss_pred             ccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCc
Q 003991          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (781)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (781)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (966)
T KOG4626|consen  186 --------------------------------------------------------------------------------  185 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhH
Q 003991          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (781)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (781)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (966)
T KOG4626|consen  186 --------------------------------------------------------------------------------  185 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991          361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE  440 (781)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (781)
                                            +...+|..+-..|+..+|..+|.++++.+|..+.+|.++|.++..+|+...|+..|++
T Consensus       186 ----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~e  243 (966)
T KOG4626|consen  186 ----------------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEE  243 (966)
T ss_pred             ----------------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHH
Confidence                                  1112355667789999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      +++++|...++|+++|.+|...+.++.|+.+|.+++...|++..++-++|.+|+.+|..+-|+..|+++++..|+.+.++
T Consensus       244 AvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay  323 (966)
T KOG4626|consen  244 AVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY  323 (966)
T ss_pred             hhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (781)
                      .++|.++-..|+..+|..+|.+++.+.|+++++.+++|.+|..+|.+++|...|.++++..|....++.++|.+|.++|+
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn  403 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN  403 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 003991          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEF  680 (781)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  680 (781)
                      +++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|...+       ++.++|..+...|+..+|+
T Consensus       404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-------AhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-------AHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-------HHhhHHHHhhccCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999988       4555566667789999999


Q ss_pred             HHHhhhcCCCcccHHHHHHhc
Q 003991          681 CWFDIDGDIDPLFKEYWCKRL  701 (781)
Q Consensus       681 ~~~~~~~~~~p~~~~~~~~~~  701 (781)
                      ..|+.++.++|+|++.+++++
T Consensus       477 ~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  477 QSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHHHHccCCCCchhhhHHH
Confidence            999999999999999876654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-41  Score=331.50  Aligned_cols=436  Identities=22%  Similarity=0.276  Sum_probs=331.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 003991           33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (781)
Q Consensus        33 ~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  111 (781)
                      ...+...+.+||++|++|+|++||++|+.||+++|+ |..|+|||.||..+|+|++.+++|++|++++|++++|++|++.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            456778889999999999999999999999999977 9999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccC
Q 003991          112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN  191 (781)
Q Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (781)
                      ++..+|++++|+.+..-.                               |+...             +.....+--..+.
T Consensus       192 A~E~lg~~~eal~D~tv~-------------------------------ci~~~-------------F~n~s~~~~~eR~  227 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVL-------------------------------CILEG-------------FQNASIEPMAERV  227 (606)
T ss_pred             HHHhhccHHHHHHhhhHH-------------------------------HHhhh-------------cccchhHHHHHHH
Confidence            999999999999655433                               11110             0000000000000


Q ss_pred             CCCCcccccccCCcccccccccCCCCCCCC-CCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcc
Q 003991          192 HNKSDICDSSSQSRDVSETCSKSSHDPDLC-NGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDA  270 (781)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (781)
                      .++..+....                 ..+ ....+.+|..+++..+...|+..+...                      
T Consensus       228 Lkk~a~~ka~-----------------e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~----------------------  268 (606)
T KOG0547|consen  228 LKKQAMKKAK-----------------EKLKENRPPVLPSATFIASYFGSFHADPKPL----------------------  268 (606)
T ss_pred             HHHHHHHHHH-----------------HhhcccCCCCCCcHHHHHHHHhhcccccccc----------------------
Confidence            0000000000                 011 112233333333333332332111100                      


Q ss_pred             ccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhh
Q 003991          271 SEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF  350 (781)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (781)
                                                                                     ...+...          
T Consensus       269 ---------------------------------------------------------------~~~~~~k----------  275 (606)
T KOG0547|consen  269 ---------------------------------------------------------------FDNKSDK----------  275 (606)
T ss_pred             ---------------------------------------------------------------ccCCCcc----------
Confidence                                                                           0000000          


Q ss_pred             hhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhC----CCC---------
Q 003991          351 KWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE---GKYASAISIFDQILKED----PMY---------  414 (781)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~----p~~---------  414 (781)
                                                    .+....-+...+..   ..|..|...+.+.....    ..+         
T Consensus       276 ------------------------------sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~  325 (606)
T KOG0547|consen  276 ------------------------------SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM  325 (606)
T ss_pred             ------------------------------chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence                                          11111111112222   24555555555443211    112         


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      +.++...|..++-.|++-.|...|+.++.++|.....|..+|.+|...++.++....|.++..++|+++++|+..|++++
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f  405 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF  405 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence            56788889999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      -++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus       406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCC------CHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          575 QQVLYIDKR------FSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       575 ~~al~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      .+++.+.|.      ++..+...|.+.. -.+++..|+..++++++++|....++..||.+..++|+.++|+++|++++.
T Consensus       486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999997      5555555554432 358999999999999999999999999999999999999999999999998


Q ss_pred             hccCcHH
Q 003991          648 LELDSME  654 (781)
Q Consensus       648 ~~p~~~~  654 (781)
                      +..+-.+
T Consensus       566 lArt~~E  572 (606)
T KOG0547|consen  566 LARTESE  572 (606)
T ss_pred             HHHhHHH
Confidence            8655433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=8.2e-38  Score=353.49  Aligned_cols=439  Identities=19%  Similarity=0.206  Sum_probs=346.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      .+...+..++.+|..|+|++|+.+|+++|.+.|++..|+|+|.||+++|+|++|+.+|++||+++|++.++++++|.+|.
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34556688999999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (781)
                      .+|++++|+..|..++.+.+........++...-. ..+....     ...                             
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~-----~~~-----------------------------  250 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA-----KEI-----------------------------  250 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH-----HHH-----------------------------
Confidence            99999999999988866654443322221111000 0000000     000                             


Q ss_pred             CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (781)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (781)
                                                +.......+....+..+...+...                              
T Consensus       251 --------------------------l~~~~~~~~~~~~~~~~~~~~~~~------------------------------  274 (615)
T TIGR00990       251 --------------------------LETKPENLPSVTFVGNYLQSFRPK------------------------------  274 (615)
T ss_pred             --------------------------HhcCCCCCCCHHHHHHHHHHccCC------------------------------
Confidence                                      000000000000000000000000                              


Q ss_pred             ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (781)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (781)
                                ...                            .                                      
T Consensus       275 ----------~~~----------------------------~--------------------------------------  278 (615)
T TIGR00990       275 ----------PRP----------------------------A--------------------------------------  278 (615)
T ss_pred             ----------cch----------------------------h--------------------------------------
Confidence                      000                            0                                      


Q ss_pred             hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Q 003991          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQ  428 (781)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~  428 (781)
                                    .+.......+.....+..+|...   ...++|++|+..|+++++.   .|....++..+|.++..+
T Consensus       279 --------------~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~  344 (615)
T TIGR00990       279 --------------GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK  344 (615)
T ss_pred             --------------hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence                          00000000111111222233222   3458899999999999986   477788999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003991          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (781)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (781)
                      |++++|+..|++++..+|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k  424 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK  424 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-
Q 003991          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-  587 (781)
Q Consensus       509 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-  587 (781)
                      ++.++|++..++..+|.++..+|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++.+.|..... 
T Consensus       425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY  504 (615)
T ss_pred             HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998865332 


Q ss_pred             -----HHHHHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          588 -----YHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       588 -----~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                           +...+.. +...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus       505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       505 MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence                 2233333 344799999999999999999999999999999999999999999999999999887655

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.1e-33  Score=337.91  Aligned_cols=310  Identities=18%  Similarity=0.138  Sum_probs=293.9

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      .+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  668 (899)
T TIGR02917       589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN  668 (899)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            44555667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      ..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++.
T Consensus       669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~  747 (899)
T TIGR02917       669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALL  747 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988 67788999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (781)
                      ..|++++|+..+++++...|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+ .+|+.++
T Consensus       748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~  826 (899)
T TIGR02917       748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA  826 (899)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 8899999


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      ++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.       +++..+..+...|++++|...+.+..
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA-------IRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999887       55666777888899999999987654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1e-32  Score=331.87  Aligned_cols=320  Identities=19%  Similarity=0.190  Sum_probs=185.0

Q ss_pred             HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q 003991          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (781)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (781)
                      .......|.++..++.+|..+...|++++|+..++++++.+|........++..+...|++++|+..+.+.+...|.++.
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  466 (899)
T TIGR02917       387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS  466 (899)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcH
Confidence            33344445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  530 (781)
                      .+..+|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..+++++...|.+..++..++.++...
T Consensus       467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  546 (899)
T TIGR02917       467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT  546 (899)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence            55555555555556666666666555555555555555555555555666666666655555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      |++++|+..+.+++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++
T Consensus       547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  626 (899)
T TIGR02917       547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK  626 (899)
T ss_pred             CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56666666665555555555555555555555566666666666655555555555555666666666666666666666


Q ss_pred             hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (781)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  690 (781)
                      +++..|.++.++..+|.++...|++++|+..|+++++.+|++..       .++..+..+...+++++|+..++......
T Consensus       627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  699 (899)
T TIGR02917       627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE-------AQIGLAQLLLAAKRTESAKKIAKSLQKQH  699 (899)
T ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            65555555555556666666666666666666666665555554       34444555555666666666665555555


Q ss_pred             cccHHHH
Q 003991          691 PLFKEYW  697 (781)
Q Consensus       691 p~~~~~~  697 (781)
                      |.....|
T Consensus       700 ~~~~~~~  706 (899)
T TIGR02917       700 PKAALGF  706 (899)
T ss_pred             cCChHHH
Confidence            5444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.6e-32  Score=325.43  Aligned_cols=316  Identities=16%  Similarity=0.076  Sum_probs=270.3

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHH
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA  434 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A  434 (781)
                      .+..++...|.++++++.+|.+++..|++++|+.+|+++++.+|++..              ....+|.++...|++++|
T Consensus       291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            556667778999999999999999999999999999999999887642              123557888899999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------
Q 003991          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-----------------------  491 (781)
Q Consensus       435 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------  491 (781)
                      +..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.                       
T Consensus       371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~  450 (1157)
T PRK11447        371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR  450 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999999988766554444                       


Q ss_pred             -------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Q 003991          492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (781)
Q Consensus       492 -------------------~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (781)
                                         ++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|.++.
T Consensus       451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                               3446789999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCCCCHHHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG  592 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la  592 (781)
                      .++.++..+...+++++|+..++++                                        +...|.++..+..+|
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La  610 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence            8887777777777777776665532                                        224677888889999


Q ss_pred             HHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Q 003991          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT  672 (781)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  672 (781)
                      .++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..|+++++..|+++..       +...|.++..
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~-------~~~la~~~~~  683 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT-------QRRVALAWAA  683 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH-------HHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999998874       4455666677


Q ss_pred             HhchhhHHHHHhhhcCCCc
Q 003991          673 ASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       673 ~~~~~~A~~~~~~~~~~~p  691 (781)
                      .|++++|+..|+++....|
T Consensus       684 ~g~~~eA~~~~~~al~~~~  702 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIPQAK  702 (1157)
T ss_pred             CCCHHHHHHHHHHHhhhCc
Confidence            8899999999998877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4.1e-32  Score=326.61  Aligned_cols=306  Identities=19%  Similarity=0.180  Sum_probs=272.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--------------
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--------------  450 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------  450 (781)
                      ..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..              
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            456899999999999999999999999999999999999999999999999999999999997642              


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-----  525 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~-----  525 (781)
                      ....+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.     
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            223458888999999999999999999999999999999999999999999999999999999998776655444     


Q ss_pred             -------------------------------------HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Q 003991          526 -------------------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (781)
Q Consensus       526 -------------------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  568 (781)
                                                           ++...|++++|+..|+++++.+|+++.+++.+|.+|...|+++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence                                                 3456799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh-------------------------------------
Q 003991          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG-------------------------------------  611 (781)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------------------------------  611 (781)
                      +|+..+++++...|+++.+++.++..+...+++++|+..++++                                     
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999998888888777777777777766543                                     


Q ss_pred             ---hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcC
Q 003991          612 ---LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (781)
Q Consensus       612 ---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  688 (781)
                         ++..|.++..+..+|.++...|++++|+..|+++++.+|++++       +++.++..+...+++++|+..|+.+..
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-------a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-------ARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence               2246888889999999999999999999999999999999998       555666777788999999999999998


Q ss_pred             CCcccHHHH
Q 003991          689 IDPLFKEYW  697 (781)
Q Consensus       689 ~~p~~~~~~  697 (781)
                      ..|.....+
T Consensus       666 ~~p~~~~~~  674 (1157)
T PRK11447        666 TANDSLNTQ  674 (1157)
T ss_pred             cCCCChHHH
Confidence            888766553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-33  Score=281.85  Aligned_cols=476  Identities=18%  Similarity=0.168  Sum_probs=351.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      +...+.++|.+|+.|||+.|+.+|+.+|.++ +|+..|+||..+|..+|+|++|+++..+.++++|.++++|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            4567789999999999999999999999999 889999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (781)
                      -+|+|++|+..|.++|++.|....-..++.+.. ....+.                      ......+.++....+.+.
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~----------------------~~~~~~p~~~~~l~~~p~  138 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA----------------------DQLFTKPYFHEKLANLPL  138 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh----------------------hhhccCcHHHHHhhcChh
Confidence            999999999999999666666655444444333 111000                      011122334444444444


Q ss_pred             CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (781)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (781)
                      .......   +.++.+.......|..+..++.+.+......++. +.......                      ...+ 
T Consensus       139 t~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~----------------------~~~~-  191 (539)
T KOG0548|consen  139 TNYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDELLFY----------------------ASGI-  191 (539)
T ss_pred             hhhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCcccccc----------------------cccc-
Confidence            4444444   6777777777777777777777555544444433 22111000                      0000 


Q ss_pred             ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (781)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (781)
                          ........+.                                               .+...+...+.+       
T Consensus       192 ----~~~~~~~~p~-----------------------------------------------~~~~~~~~~~~d-------  213 (539)
T KOG0548|consen  192 ----EILASMAEPC-----------------------------------------------KQEHNGFPIIED-------  213 (539)
T ss_pred             ----ccCCCCCCcc-----------------------------------------------cccCCCCCccch-------
Confidence                0000000000                                               000000000000       


Q ss_pred             hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 003991          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA  434 (781)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  434 (781)
                         ...+.+             .-......-.+|...+...++..|++.|..+++++ .+...+...+.+|+..|.+.++
T Consensus       214 ---~~ee~~-------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c  276 (539)
T KOG0548|consen  214 ---NTEERR-------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAEC  276 (539)
T ss_pred             ---hHHHHH-------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHh
Confidence               000000             00113445678999999999999999999999999 8888899999999999999999


Q ss_pred             HHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003991          435 ISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (781)
Q Consensus       435 ~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (781)
                      +.....+++......       .+...+|..|...++++.|+.+|.+++.....        ..+.......++++....
T Consensus       277 ~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e  348 (539)
T KOG0548|consen  277 IELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAE  348 (539)
T ss_pred             hcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHH
Confidence            999998887654332       23444666777788999999999998765543        455566677788888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (781)
Q Consensus       508 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (781)
                      ...-++|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+
T Consensus       349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            88888888777777789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      |...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+.+++
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            999999999999999999999999999999998888888888875444444455555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=2.3e-31  Score=301.04  Aligned_cols=262  Identities=19%  Similarity=0.253  Sum_probs=239.8

Q ss_pred             ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991          428 QRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (781)
Q Consensus       428 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (781)
                      .++|++|+..|++++..   .|....++..+|.++...|++++|+..|++++.++|.....+..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            36899999999999986   477788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (781)
Q Consensus       505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (781)
                      .|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|++
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH------HHHHHHH-HHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      +.++..+|.++...|++++|+..|++++.+.|.+...      +...+.. +...|++++|+.+++++++++|++..   
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~---  543 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI---  543 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH---
Confidence            9999999999999999999999999999999875332      2333333 34479999999999999999999876   


Q ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                          ++..+|..+...|++++|+.+|+++.++.+...+.
T Consensus       544 ----a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       544 ----AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             ----HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence                55667888888999999999999999888865543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=5.3e-29  Score=280.23  Aligned_cols=284  Identities=14%  Similarity=0.042  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..++ .+.
T Consensus       110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~  188 (656)
T PRK15174        110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL  188 (656)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence            3445556777777788888888888888888888888888888888888888888888877777777777666554 367


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----
Q 003991          461 ALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK----  535 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~----  535 (781)
                      ..|++++|+..+++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++    
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~  268 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQ  268 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence            778888888888887777653 333445556777778888888888888888888888888888888888888775    


Q ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            67888888888888888888888888888888888888888888888888888888888888888888888888888878


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (781)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (781)
                      |+++..+..+|.++...|++++|+..|+++++.+|++....+..+...+.
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~  398 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD  398 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence            87776666677778888888888888888888887766544443333333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.98  E-value=8.4e-28  Score=275.49  Aligned_cols=238  Identities=14%  Similarity=0.055  Sum_probs=209.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  527 (781)
                      ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence            66677888888877 788889999999999988654 36666777788999999999999987765554 4577889999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (781)
                      ...|++++|+.++++++...|.....+..++......|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999988888777777777889999999999999999996 89999999999999999999999


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      |++++..+|+++.++.++|.++...|++++|+..|+++++++|+++.       +++.+|.++...|++++|+..|++++
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA-------LIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998       56677777788899999999999999


Q ss_pred             CCCcccHHH
Q 003991          688 DIDPLFKEY  696 (781)
Q Consensus       688 ~~~p~~~~~  696 (781)
                      .++|+....
T Consensus       705 ~l~P~~a~i  713 (987)
T PRK09782        705 DDIDNQALI  713 (987)
T ss_pred             hcCCCCchh
Confidence            999986543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.98  E-value=1.9e-28  Score=275.77  Aligned_cols=334  Identities=13%  Similarity=0.023  Sum_probs=300.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 003991           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (781)
Q Consensus        41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  119 (781)
                      .-.-+.+++|++++|+..+..++... .++..+++.+.+.+..|++++|+..+++++.++|+++.++..+|.++..+|++
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~  126 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY  126 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence            33457789999999999999999999 66677999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccc
Q 003991          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (781)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (781)
                      ++|+..|++++++.                                                                  
T Consensus       127 ~~Ai~~l~~Al~l~------------------------------------------------------------------  140 (656)
T PRK15174        127 ATVADLAEQAWLAF------------------------------------------------------------------  140 (656)
T ss_pred             HHHHHHHHHHHHhC------------------------------------------------------------------
Confidence            99999999993222                                                                  


Q ss_pred             cccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCC
Q 003991          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (781)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (781)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (656)
T PRK15174        141 --------------------------------------------------------------------------------  140 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhh
Q 003991          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (781)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (781)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (656)
T PRK15174        141 --------------------------------------------------------------------------------  140 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 003991          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (781)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (781)
                                        |.++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++
T Consensus       141 ------------------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        141 ------------------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR  201 (656)
T ss_pred             ------------------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence                              122445666788899999999999999999999999988887664 4788999999999999


Q ss_pred             HHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCC
Q 003991          440 EAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKLDK  514 (781)
Q Consensus       440 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~p  514 (781)
                      +++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++    |+..|++++..+|
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P  281 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS  281 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence            99998763 344455678889999999999999999999999999999999999999999986    8999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991          515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (781)
Q Consensus       515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (781)
                      +++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|++...+..+|.+
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988878888999


Q ss_pred             HHHCCCHHHHHHHHHHhhccCCCCH
Q 003991          595 LHGLGQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~~~  619 (781)
                      +...|++++|+..|+++++..|++.
T Consensus       362 l~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999999999999998864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.6e-27  Score=252.37  Aligned_cols=463  Identities=15%  Similarity=0.090  Sum_probs=369.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc-cchhh---hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHc
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQD---ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSAL  116 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~  116 (781)
                      -.+.+|..|+|+.+..++..+|.-. ..+..   ++..|.+|..+|+|++|...|.++++.+|++ .-+++.+|..|+..
T Consensus       276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~  355 (1018)
T KOG2002|consen  276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR  355 (1018)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence            3367899999999999999999887 43333   9999999999999999999999999999998 77999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCc
Q 003991          117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD  196 (781)
Q Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (781)
                      |+++.|...|++.+...|+....+..+..+...........      +                                
T Consensus       356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~------d--------------------------------  397 (1018)
T KOG2002|consen  356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR------D--------------------------------  397 (1018)
T ss_pred             chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH------H--------------------------------
Confidence            99999999999999999999888877665554432000000      0                                


Q ss_pred             ccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccccc
Q 003991          197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ  276 (781)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (781)
                               ....++.+                          ++                                   
T Consensus       398 ---------~a~~~l~K--------------------------~~-----------------------------------  407 (1018)
T KOG2002|consen  398 ---------KASNVLGK--------------------------VL-----------------------------------  407 (1018)
T ss_pred             ---------HHHHHHHH--------------------------HH-----------------------------------
Confidence                     00000000                          00                                   


Q ss_pred             CCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhH
Q 003991          277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK  356 (781)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (781)
                                                                           .   ..+........++.++.......
T Consensus       408 -----------------------------------------------------~---~~~~d~~a~l~laql~e~~d~~~  431 (1018)
T KOG2002|consen  408 -----------------------------------------------------E---QTPVDSEAWLELAQLLEQTDPWA  431 (1018)
T ss_pred             -----------------------------------------------------h---cccccHHHHHHHHHHHHhcChHH
Confidence                                                                 0   00000000111111111100000


Q ss_pred             HhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHH
Q 003991          357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTARA  426 (781)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~-----~~~~~~la~~~~  426 (781)
                      .  -.........+.  ....+..++.+...|..++..|++..|...|.+++..     +++.     ....+++|.++.
T Consensus       432 s--L~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E  507 (1018)
T KOG2002|consen  432 S--LDAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE  507 (1018)
T ss_pred             H--HHHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence            0  001111111111  2234477999999999999999999999999999876     2222     235899999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003991          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL  506 (781)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  506 (781)
                      ..++++.|.+.|..++...|...+++..+|.+....++..+|...+..++..+..++.++..+|.+++....+..|.+-|
T Consensus       508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f  587 (1018)
T KOG2002|consen  508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF  587 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991          507 SACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (781)
Q Consensus       507 ~~a~~~~p--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (781)
                      +..+....  .++.+...||+++++            .+.+++|+..|.+++..+|.+..+-..+|.++...|++.+|..
T Consensus       588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~d  667 (1018)
T KOG2002|consen  588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARD  667 (1018)
T ss_pred             HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHH
Confidence            87776532  456777888887764            4568899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      +|.++.+-..+++.+|.++|.||..+|+|..|++.|+.+++..  .+++.++..||.+++..|.+.+|...+.+|+.+.|
T Consensus       668 IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  668 IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            9999998877889999999999999999999999999999763  35789999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Q 003991          651 DSMEKFVLQCLAFYQKEIALYT  672 (781)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~  672 (781)
                      .++...++++.+....+.....
T Consensus       748 ~~~~v~FN~a~v~kkla~s~lr  769 (1018)
T KOG2002|consen  748 SNTSVKFNLALVLKKLAESILR  769 (1018)
T ss_pred             ccchHHhHHHHHHHHHHHHHHh
Confidence            9999999999998888766443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=2.8e-27  Score=271.21  Aligned_cols=275  Identities=11%  Similarity=-0.031  Sum_probs=248.7

Q ss_pred             HHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          407 ILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD  484 (781)
Q Consensus       407 ~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  484 (781)
                      ++...|.  ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.+ .
T Consensus       467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~  543 (987)
T PRK09782        467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E  543 (987)
T ss_pred             hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H
Confidence            3334466  88899999999987 899999999999999999765 36667888889999999999999988876654 5


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  564 (781)
                      .+..+|.++...|++++|+.++++++..+|.....+..++......|++++|+..++++++.+|+ ..++..+|.++.+.
T Consensus       544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l  622 (987)
T PRK09782        544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence            67889999999999999999999999999999888887777777889999999999999999997 99999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      |++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|++
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcc
Q 003991          645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL  692 (781)
Q Consensus       645 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  692 (781)
                      +++++|++..       +.+..|.......++..+...+.++..++|.
T Consensus       703 Al~l~P~~a~-------i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        703 VIDDIDNQAL-------ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHhcCCCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999877       6667777777778888888888777777664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=3.9e-27  Score=271.08  Aligned_cols=396  Identities=13%  Similarity=0.013  Sum_probs=258.9

Q ss_pred             HhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 003991           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (781)
Q Consensus        47 ~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  125 (781)
                      .-.|++++|+..|.+++... .....+.+.|.++.+.|++++|+..++++++++|+++.++..+|.++...|++++|+..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            46899999999999999877 44446899999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccCCc
Q 003991          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR  205 (781)
Q Consensus       126 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (781)
                      ++++++..|+                                                                      
T Consensus       106 l~~~l~~~P~----------------------------------------------------------------------  115 (765)
T PRK10049        106 AKQLVSGAPD----------------------------------------------------------------------  115 (765)
T ss_pred             HHHHHHhCCC----------------------------------------------------------------------
Confidence            8888433222                                                                      


Q ss_pred             ccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccCCC
Q 003991          206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN  285 (781)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (781)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (765)
T PRK10049        116 --------------------------------------------------------------------------------  115 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHHhh
Q 003991          286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN  365 (781)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (781)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (765)
T PRK10049        116 --------------------------------------------------------------------------------  115 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 003991          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN  445 (781)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (781)
                                    ++. ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...+..+.|+..++++.. .
T Consensus       116 --------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        116 --------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             --------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence                          234 555566666667777777777777777777776666667766666666667666665554 3


Q ss_pred             CCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHhcCCHHHHHH
Q 003991          446 PSAGE-----AWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSADI-------LHE-RGIVNFKFKDFNAAVE  504 (781)
Q Consensus       446 p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~~~~~~A~~  504 (781)
                      |....     ....+..+..     ..+++   ++|+..++.+++..|.++..       ... ++ .+...|++++|+.
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~  258 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVIS  258 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence            33200     1111111111     11223   55666666666543332211       111 22 2345566777777


Q ss_pred             HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          505 DLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLY  579 (781)
Q Consensus       505 ~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (781)
                      .|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+    ......++.++...|++++|+..++++..
T Consensus       259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence            777766654332 2233335666667777777777777666665544    34455556666666777777777766666


Q ss_pred             hCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          580 IDKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       580 ~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      ..|.               ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~  418 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK  418 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            5542               1234556666666777777777777777777777777777777777777777777777777


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       645 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      ++.++|++..       .++..+......+++++|...++..+...|+....
T Consensus       419 al~l~Pd~~~-------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        419 AEVLEPRNIN-------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHhhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            7777777666       34444445555666677777776666666666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.5e-26  Score=243.87  Aligned_cols=477  Identities=17%  Similarity=0.161  Sum_probs=372.0

Q ss_pred             HHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRKEEALSVWEKG  129 (781)
Q Consensus        52 ~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a  129 (781)
                      ++.|...|..++... +|+..+.++|.+.+..|+|..|+..|.++|-++|.. ++..+.+|.|+.++|+.+.|+..|+++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            699999999999999 888889999999999999999999999999999976 457788999999999999999999999


Q ss_pred             HhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccCCccccc
Q 003991          130 YEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSE  209 (781)
Q Consensus       130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (781)
                      +++.|....++..|..++-..... ...     .                                              
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~-~s~-----~----------------------------------------------  253 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDS-DSY-----K----------------------------------------------  253 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccch-HHH-----H----------------------------------------------
Confidence            766665555544443333222100 000     0                                              


Q ss_pred             ccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccCCCCCCc
Q 003991          210 TCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPID  289 (781)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (781)
                                            ..+......+                                                
T Consensus       254 ----------------------~~~~ll~~ay------------------------------------------------  263 (1018)
T KOG2002|consen  254 ----------------------KGVQLLQRAY------------------------------------------------  263 (1018)
T ss_pred             ----------------------HHHHHHHHHH------------------------------------------------
Confidence                                  0000000000                                                


Q ss_pred             ccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHHhhHHHH
Q 003991          290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC  369 (781)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (781)
                                                                 .+.+.++.....++..++   .    .++...-..+.
T Consensus       264 -------------------------------------------~~n~~nP~~l~~LAn~fy---f----K~dy~~v~~la  293 (1018)
T KOG2002|consen  264 -------------------------------------------KENNENPVALNHLANHFY---F----KKDYERVWHLA  293 (1018)
T ss_pred             -------------------------------------------hhcCCCcHHHHHHHHHHh---h----cccHHHHHHHH
Confidence                                                       011112221111111111   0    11122222222


Q ss_pred             HHHhh--ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 003991          370 VTRIS--KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (781)
Q Consensus       370 ~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (781)
                      ...+.  ...+...+.+|.+|.++..+|+|++|..+|.++++.+|++ .-.++.+|.+++..|+++.|..+|++++...|
T Consensus       294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p  373 (1018)
T KOG2002|consen  294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP  373 (1018)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence            22222  3456677889999999999999999999999999999998 77889999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH
Q 003991          447 SAGEAWKRRGQARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENK  517 (781)
Q Consensus       447 ~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~p~~~  517 (781)
                      ++.+....+|.+|...+    ..+.|..++.++++..|.+.++|..++.++....-+.. +..|.+|+..     .+-.+
T Consensus       374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~  452 (1018)
T KOG2002|consen  374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP  452 (1018)
T ss_pred             chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence            99999999999998886    67899999999999999999999999999876655554 9999999854     34457


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (781)
                      +.+.++|..++..|++.+|...|.+++..     +++.     ....+++|.++...++++.|.+.|..++..+|....+
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~  532 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA  532 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence            89999999999999999999999999876     1221     3358899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE  667 (781)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (781)
                      +..+|......++..+|...+..++..+..++.++..+|.++....++..|.+-|+..++.-....++|...+++.+...
T Consensus       533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~  612 (1018)
T KOG2002|consen  533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ  612 (1018)
T ss_pred             HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence            99999888888999999999999999999999999999999999999999999888888765555666666555544332


Q ss_pred             HH-------HHHHhchhhHHHHHhhhcCCCcccHHHHHHhcCc
Q 003991          668 IA-------LYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHP  703 (781)
Q Consensus       668 ~~-------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  703 (781)
                      ..       .-..+.+++|+.+|.+++..+|.+-  |+..+.+
T Consensus       613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~--yAANGIg  653 (1018)
T KOG2002|consen  613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM--YAANGIG  653 (1018)
T ss_pred             HhcccccChHHHHHHHHHHHHHHHHHHhcCcchh--hhccchh
Confidence            22       3356778999999999999998654  5444444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.1e-27  Score=241.82  Aligned_cols=300  Identities=21%  Similarity=0.226  Sum_probs=273.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      .|......-+..+|+..|++.-...++...++..+|.+|+.+++|++|..+|+.+-...|-..+..-.+..+++.+.+--
T Consensus       325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v  404 (638)
T KOG1126|consen  325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV  404 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence            34444556678899999999778888888999999999999999999999999999999987777667777777777766


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (781)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (781)
                      +--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|+...+|..+|.-+....++|.|..+|++|+..
T Consensus       405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            66667778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (781)
                      +|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCccc
Q 003991          627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF  693 (781)
Q Consensus       627 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  693 (781)
                      .++..++++++|+..+++..++-|++..       +++-.|..+-..|+.+.|+..|..+.+++|.=
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es~-------v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQESS-------VFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchHH-------HHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            9999999999999999999999999987       66666667777888899999998888888843

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-25  Score=222.26  Aligned_cols=260  Identities=19%  Similarity=0.183  Sum_probs=229.5

Q ss_pred             CHHHHHHHHHHHHHhC----CCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991          430 ELEAAISDFTEAIQSN----PSA---------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (781)
Q Consensus       430 ~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (781)
                      .|..|...+.+.....    ..+         ..++...|..++..|++-.|...|.+++.++|.+...+..+|.+|...
T Consensus       294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~  373 (606)
T KOG0547|consen  294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE  373 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence            5666666665554321    111         457788888899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       497 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      ++.++....|.++..++|.++.+|+..|.+++-++++++|+.-|++++.++|++..++..++.+.+++++++++...|+.
T Consensus       374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee  453 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE  453 (606)
T ss_pred             hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhc
Q 003991          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYH-AIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  649 (781)
                      ++...|+.++++...|.++..++++++|++.|+.++.+.|.      ++..+...|.+.. -.+++..|+.++++|++++
T Consensus       454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D  533 (606)
T KOG0547|consen  454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD  533 (606)
T ss_pred             HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999998      6666666555443 3589999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      |.+..       ++-.+|.....+++.++|+..|+++..+.....+-
T Consensus       534 pkce~-------A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~  573 (606)
T KOG0547|consen  534 PKCEQ-------AYETLAQFELQRGKIDEAIELFEKSAQLARTESEM  573 (606)
T ss_pred             chHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence            99877       55666666777889999999999988876655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=5.2e-25  Score=253.51  Aligned_cols=197  Identities=14%  Similarity=0.002  Sum_probs=145.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYK  534 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~  534 (781)
                      ...|++++|+..|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+    ......++.++...|+++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            34455555555555555543221 1122224555555555555555555555554443    233444555555556666


Q ss_pred             HHHHHHHHHHhhCc-------------cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991          535 KAEEAHLKAIQLDR-------------NF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       535 ~A~~~~~~al~~~~-------------~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (781)
                      +|+..++++....|             ++  ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            66666665555544             32  4577889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      ++++|+..+++++..+|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus       408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999998643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.2e-26  Score=237.23  Aligned_cols=285  Identities=18%  Similarity=0.219  Sum_probs=269.6

Q ss_pred             HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (781)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (781)
                      +..+....++....+..+|..|+..++|++|..+|+.+-+..|-..+..-....+++.+.+--+--.+.+..+..+|+.+
T Consensus       342 ~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP  421 (638)
T KOG1126|consen  342 FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP  421 (638)
T ss_pred             HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence            34455667778899999999999999999999999999999998877777778888888776666666777889999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      +.|..+|.||..+++++.|+++|+++++++|....++..+|.-+.....++.|..+|+.|+..+|.+..+|+.+|.+|.+
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      +++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++...+++++|+..++
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +..++.|++..+++.+|.+|.++|+.+.|+..|.-|.+++|.-.+
T Consensus       582 eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  582 ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            999999999999999999999999999999999999999997644

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-24  Score=218.42  Aligned_cols=280  Identities=17%  Similarity=0.154  Sum_probs=263.2

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      -..+++.....+..++..++|.+..++++..++.+|-+..++...-.++...|+..+-...-.+.+...|+.+..|+..|
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg  319 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG  319 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence            34678899999999999999999999999999999999888766555999999999988888999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      ..|...|++.+|..+|.++..++|....+|...|..+...+..++|+.+|..|-++.|........+|.-|...++++-|
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-------RFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      ..+|.+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+       .....+.++|.++.+++.+++|+.+|+
T Consensus       400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999984322       245568999999999999999999999


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      +++.+.|.++.++..+|.+|..+|+++.|+.+|.+++-++|++.-.-
T Consensus       480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~  526 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS  526 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence            99999999999999999999999999999999999999999996543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.94  E-value=1.3e-23  Score=198.58  Aligned_cols=331  Identities=15%  Similarity=0.190  Sum_probs=268.7

Q ss_pred             hHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHH
Q 003991           30 DSVMASAITAR--IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY  106 (781)
Q Consensus        30 ~~~~~~~~~~r--~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  106 (781)
                      .+....+.-+|  ..+.++|..|++.+|+..|-.||+.+ .+-.+++.||.+|+.+|+-.-|+.++.++|++.|++.-|.
T Consensus        30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR  109 (504)
T KOG0624|consen   30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR  109 (504)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence            33333343344  67788999999999999999999999 6778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCc
Q 003991          107 ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMS  186 (781)
Q Consensus       107 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (781)
                      +.+|.+++++|++++|..+|...|...|.+....      +...                                    
T Consensus       110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~------eaqs------------------------------------  147 (504)
T KOG0624|consen  110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL------EAQS------------------------------------  147 (504)
T ss_pred             HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH------HHHH------------------------------------
Confidence            9999999999999999999999965444332110      0000                                    


Q ss_pred             ccccCCCCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccc
Q 003991          187 ETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHA  266 (781)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (781)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (504)
T KOG0624|consen  148 --------------------------------------------------------------------------------  147 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhh
Q 003991          267 SRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRS  346 (781)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (781)
                                                                                                   .++
T Consensus       148 -----------------------------------------------------------------------------kl~  150 (504)
T KOG0624|consen  148 -----------------------------------------------------------------------------KLA  150 (504)
T ss_pred             -----------------------------------------------------------------------------HHH
Confidence                                                                                         000


Q ss_pred             hhhhhhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA  426 (781)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  426 (781)
                      .           ..                   .-..+..+...++..|++..|+.....+++..|-++..+...+.||.
T Consensus       151 ~-----------~~-------------------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i  200 (504)
T KOG0624|consen  151 L-----------IQ-------------------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI  200 (504)
T ss_pred             h-----------HH-------------------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            0           00                   01223445566788999999999999999999999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHH
Q 003991          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVNF  494 (781)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~  494 (781)
                      ..|+...|+..+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++-.            -+.-..
T Consensus       201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i  280 (504)
T KOG0624|consen  201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI  280 (504)
T ss_pred             hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987544322            123345


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  570 (781)
                      ..++|.++++..++.++.+|..+.    ....+..|+...|++.+|+..+.+++..+|++..++...+..|+....|+.|
T Consensus       281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A  360 (504)
T KOG0624|consen  281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA  360 (504)
T ss_pred             hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence            667888888888888888887543    3445677777888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhCCCCHHHHH
Q 003991          571 LECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~  589 (781)
                      +..|+++.+.++++..+.-
T Consensus       361 I~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  361 IHDYEKALELNESNTRARE  379 (504)
T ss_pred             HHHHHHHHhcCcccHHHHH
Confidence            8888888888887765544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.3e-23  Score=226.19  Aligned_cols=309  Identities=17%  Similarity=0.090  Sum_probs=266.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR  455 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  455 (781)
                      .....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            355677789999999999999999999999999999999999999999999999999999998854332    3578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI  530 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~  530 (781)
                      |.++...|++++|+..|.++++..|.+..++..++.++...|++++|+..+++++...|.+.     ..+..+|.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999887653     3566789999999


Q ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      |++++|+..|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988876 4667889999999999999999999


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHh----h
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD----I  685 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----~  685 (781)
                      ++++..|+... +..++.++...|++++|+..++++++..|++..........     ......|+..+++..++    +
T Consensus       274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~-----~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH-----LAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh-----hhccCCccchhHHHHHHHHHHH
Confidence            99999998654 48999999999999999999999999999987533222211     11111335555555544    3


Q ss_pred             hcCCCcccH
Q 003991          686 DGDIDPLFK  694 (781)
Q Consensus       686 ~~~~~p~~~  694 (781)
                      .+..+|.|.
T Consensus       348 ~~~~~p~~~  356 (389)
T PRK11788        348 QLKRKPRYR  356 (389)
T ss_pred             HHhCCCCEE
Confidence            445667654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.9e-23  Score=201.90  Aligned_cols=283  Identities=16%  Similarity=0.178  Sum_probs=257.2

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK  453 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~  453 (781)
                      .+...+.-+..+..++.+|+++.|++++.-.-+.+.... .+-.++..+++.+  .++..|..+...++.++..++.++.
T Consensus       415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~  494 (840)
T KOG2003|consen  415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT  494 (840)
T ss_pred             hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence            445566778889999999999999999876655554432 3344555555553  4799999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  533 (781)
                      +.|.+-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+...+--++..+++.++.+|..+.+.
T Consensus       495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            99999999999999999999999998888999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      .+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++.-
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      +.|+.......++.|+.+.|+|..|...|+..-...|.+.+-+..+
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl  700 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL  700 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence            9999888889999999999999999999999999999998855443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-22  Score=197.75  Aligned_cols=303  Identities=15%  Similarity=0.087  Sum_probs=262.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 003991          387 RGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (781)
                      ++.++......++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-....+++-.++-
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            344555556788888888888887 7888888889999999999999999999999999998777666777777777665


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      .+---.-+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+.|++
T Consensus       313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            55556666777888878888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (781)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (781)
                      ++|.+..+|+.+|..|..++...=|+-+|++++...|+++..|..||.||.+.++.++|+.+|.+++.....+..++..+
T Consensus       393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L  472 (559)
T KOG1155|consen  393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL  472 (559)
T ss_pred             cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhh-------ccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          626 ASCYHAIGEYREAIKDYDAALDL-------ELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      |.+|.++++..+|..+|++.++.       .|+...+..       -++.-....+++++|-.+...+...++.-.+.
T Consensus       473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~-------fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea  543 (559)
T KOG1155|consen  473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL-------FLAEYFKKMKDFDEASYYATLVLKGETECEEA  543 (559)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH-------HHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence            99999999999999999999983       343333222       24555567788889888877777766554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5e-23  Score=207.85  Aligned_cols=260  Identities=18%  Similarity=0.207  Sum_probs=240.0

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      ....+.+..|.++..+...-.+++..|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|..
T Consensus       266 it~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f  345 (611)
T KOG1173|consen  266 ITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF  345 (611)
T ss_pred             HhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence            34566777888888776666699999999988888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      ..+|...|..+...|..++|+.+|..|-++.|........+|.-|...++++.|..+|.+|+.+.|.++-++..+|.+.+
T Consensus       346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            99999999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRN-------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      ..+.|.+|..+|+.++..-+.       ....+.++|.++.+.+.+++|+.++++++...|.++.++..+|.+|..+|++
T Consensus       426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence            999999999999999854221       2456899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASC  628 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~  628 (781)
                      +.|+++|.+++.+.|++..+-..|+.+
T Consensus       506 d~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  506 DKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            999999999999999987666666543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.92  E-value=1.1e-20  Score=193.15  Aligned_cols=323  Identities=16%  Similarity=0.095  Sum_probs=299.8

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      ..+.-..|+.-+..+...+.++-|+.+|..+++.+|.....|...+..-...|..++-..++++++...|.....|...+
T Consensus       512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~a  591 (913)
T KOG0495|consen  512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYA  591 (913)
T ss_pred             cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence            34446678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      ..+...|+...|...+..+++.+|++.++|.....+.+...+++.|..+|.++....|. ..+|+.-+.+...+++.++|
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999887664 56788888888999999999


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      +.+++.+++..|.....|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++.-.+|
T Consensus       671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH-----------------------HHHHHHHHHHHHH
Q 003991          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC-----------------------LAFYQKEIALYTA  673 (781)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------------------~~~~~~~~~~~~~  673 (781)
                      ++...|...-.+-.+.|+.+.|.....+|++-.|++...|....                       -++...+...+..
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e  830 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE  830 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988774322                       2345567788899


Q ss_pred             hchhhHHHHHhhhcCCCcccHHHHHHh
Q 003991          674 SKINSEFCWFDIDGDIDPLFKEYWCKR  700 (781)
Q Consensus       674 ~~~~~A~~~~~~~~~~~p~~~~~~~~~  700 (781)
                      .+++.|..||.++...+|++.+.|++.
T Consensus       831 ~k~~kar~Wf~Ravk~d~d~GD~wa~f  857 (913)
T KOG0495|consen  831 KKIEKAREWFERAVKKDPDNGDAWAWF  857 (913)
T ss_pred             HHHHHHHHHHHHHHccCCccchHHHHH
Confidence            999999999999999999999998654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=1.5e-20  Score=211.82  Aligned_cols=441  Identities=13%  Similarity=-0.011  Sum_probs=308.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-hhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHH--HHH
Q 003991           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCA  112 (781)
Q Consensus        36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~-~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l--g~~  112 (781)
                      +...+..+--.+++|+|+.|+..|.++++.+|+. ......+.++...|++++|+..|++++  +|.+...+..+  |.+
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l  111 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA  111 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence            3455677778899999999999999999999654 343488888889999999999999999  66555555555  779


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH  192 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (781)
                      +..+|++++|+..|+++++..|+.+..+..+..+.-...                                         
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~-----------------------------------------  150 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG-----------------------------------------  150 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC-----------------------------------------
Confidence            999999999999999998888888655432111000000                                         


Q ss_pred             CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991          193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE  272 (781)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (781)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (822)
T PRK14574        151 --------------------------------------------------------------------------------  150 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991          273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW  352 (781)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (781)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (822)
T PRK14574        151 --------------------------------------------------------------------------------  150 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 003991          353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE  432 (781)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  432 (781)
                       .    ..    .....+..+....|..... ..++..+...++..+|+..++++++.+|++..++..+..++...|-..
T Consensus       151 -q----~~----eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        151 -R----GG----VVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             -C----HH----HHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence             0    00    0001233444455654443 555666666788877999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHH--HHHHHc---------C---CHHHHHHHHHHHHHhCCCCH-------HHHHHHHH
Q 003991          433 AAISDFTEAIQSNPSAGEAWKRRG--QARAAL---------G---ESVEAIQDLSKALEFEPNSA-------DILHERGI  491 (781)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~la--~~~~~~---------g---~~~~A~~~~~~al~~~p~~~-------~~~~~la~  491 (781)
                      .|.+...+--.........+....  .-..+.         +   -.+.|+.-++..+...+..+       .+..-.-.
T Consensus       221 ~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~  300 (822)
T PRK14574        221 PALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG  300 (822)
T ss_pred             HHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence            888766553222111111111111  111111         1   23456666666666333222       12334445


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHHc
Q 003991          492 VNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDL  564 (781)
Q Consensus       492 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~  564 (781)
                      ++...+++.+++..|+.+.... |-...+....|..|...+++++|+.+|..++...|      ........|...|...
T Consensus       301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~  380 (822)
T PRK14574        301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES  380 (822)
T ss_pred             HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence            5667788888888888766544 23445667778888888888888888888877542      2233346677778888


Q ss_pred             CCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991          565 ANSEKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (781)
Q Consensus       565 g~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (781)
                      +++++|..++++.....|               +...+...++.++...|++.+|.+.+++.+...|.|+.++..+|.++
T Consensus       381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~  460 (822)
T PRK14574        381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY  460 (822)
T ss_pred             ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            888888888888776433               33456677788888888888888888888888888888888888888


Q ss_pred             HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      ...|++.+|...++.+..++|++..       +.+.++.+...++++.+|....+......|+....
T Consensus       461 ~~Rg~p~~A~~~~k~a~~l~P~~~~-------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        461 LARDLPRKAEQELKAVESLAPRSLI-------LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HhcCCHHHHHHHHHHHhhhCCccHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            8888888888888888888888876       55666666777788888877777777777776644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.5e-22  Score=201.25  Aligned_cols=304  Identities=24%  Similarity=0.354  Sum_probs=227.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (781)
                      -.+|...+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            34566677777777777777777777777767777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH------------------------------------------------------
Q 003991          465 SVEAIQDLSKALEFEPNSADILHERG------------------------------------------------------  490 (781)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la------------------------------------------------------  490 (781)
                      |++|+..|.+.++.+|++..+...++                                                      
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence            77777777777776666544444333                                                      


Q ss_pred             ------------------------------------------------------------------HHHHhcCCHHHHHH
Q 003991          491 ------------------------------------------------------------------IVNFKFKDFNAAVE  504 (781)
Q Consensus       491 ------------------------------------------------------------------~~~~~~~~~~~A~~  504 (781)
                                                                                        ...+...++..|++
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence                                                                              33444445555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQV  577 (781)
Q Consensus       505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (781)
                      .|..++.++ .+...+.+.+-+|+..|.+.+.+....++++.....       ..+...+|..|...++++.|+.+|+++
T Consensus       246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            666666655 555555566666666666666666655555544332       123334666788889999999999998


Q ss_pred             HhhCC--------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          578 LYIDK--------------------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       578 l~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      +....                          .-..--...|..++..|+|..|+..|.+++..+|+++..|.++|.||.+
T Consensus       325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k  404 (539)
T KOG0548|consen  325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK  404 (539)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            75432                          2222344568999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       632 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      +|.+..|+...+++++++|+...       +|+.+|.+++.+.+|+.|+..|..+.+.+|..+++
T Consensus       405 L~~~~~aL~Da~~~ieL~p~~~k-------gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  405 LGEYPEALKDAKKCIELDPNFIK-------AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HhhHHHHHHHHHHHHhcCchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99999999999999999999988       78888999999999999999999999999999887

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.1e-22  Score=198.16  Aligned_cols=278  Identities=18%  Similarity=0.175  Sum_probs=256.4

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa  337 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA  337 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence            56777778888999999999999999999999999988877777888887777766666666777888888888889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      ..|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|..++...=|
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc---
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG---  613 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---  613 (781)
                      +-+|++|+...|+++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++   
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~  497 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE  497 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999998   


Q ss_pred             ----cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          614 ----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       614 ----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                          ..|+...+...|+.-+.+.+++++|..+..+++.-++..-+
T Consensus       498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee  542 (559)
T KOG1155|consen  498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE  542 (559)
T ss_pred             hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence                45555678888999999999999999999999887655443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.92  E-value=4e-22  Score=188.56  Aligned_cols=314  Identities=17%  Similarity=0.221  Sum_probs=272.1

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      ..|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-..|+..+.+++++.|+...+....
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSA---DI------------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      |.+++++|++++|..-|..++..+|++.   ++            +......++..|++..|+.+....+++.|=+...+
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            9999999999999999999999999552   22            22233445667899999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---H-------
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH---L-------  590 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~-------  590 (781)
                      ...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-   .       
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~  272 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS  272 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998754321   1       


Q ss_pred             --HHHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          591 --RGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       591 --la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                        -+......++|.++++..++.++.+|..+.    ....+..|+..-|++.+|+....++++++|++.+       ++.
T Consensus       273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-------~l~  345 (504)
T KOG0624|consen  273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-------VLC  345 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-------HHH
Confidence              133345678899999999999999888543    4455778888899999999999999999999988       666


Q ss_pred             HHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          665 QKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       665 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      .++.++.....|+.|+.-|+++.+.+++....
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~  377 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRA  377 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence            77777777788888999898888888876554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=3.8e-21  Score=207.04  Aligned_cols=280  Identities=19%  Similarity=0.116  Sum_probs=247.2

Q ss_pred             HHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991          367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAI  442 (781)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (781)
                      ...+..++...|.++.+++.+|..+...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|.+++
T Consensus        55 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l  134 (389)
T PRK11788         55 IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV  134 (389)
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            335566677789999999999999999999999999999998754332    3578899999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (781)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~  517 (781)
                      +..|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|.++...|++++|+..++++++..|+..
T Consensus       135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            99999999999999999999999999999999999887653     3566789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (781)
                      .++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++...|+... +..++.++.
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~  293 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLE  293 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHH
Confidence            999999999999999999999999999998876 467889999999999999999999999999998754 488999999


Q ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHh
Q 003991          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALD  647 (781)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  647 (781)
                      ..|++++|+..++++++..|++......++..+..  .|+..+|+..+++.++
T Consensus       294 ~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        294 EQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            99999999999999999999987655455444422  4588888888877764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.91  E-value=4e-21  Score=187.89  Aligned_cols=270  Identities=17%  Similarity=0.135  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIV  492 (781)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (781)
                      +.-...+-.+++.|+++.|++.+.-.-+.+... ..+-.++..+++.+  .++..|..+...++.++..++.++.+.|.+
T Consensus       420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~  499 (840)
T KOG2003|consen  420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI  499 (840)
T ss_pred             hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence            344667888999999999999987665554433 33455666666664  378999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (781)
Q Consensus       493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (781)
                      .+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+-.++.++++.++.+|..+.+..+|++
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      ++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+...++|..|....-+++|+.+|+++--+.|+-
T Consensus       580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~  659 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ  659 (840)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcc
Q 003991          653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL  692 (781)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  692 (781)
                      ..       +.+..+.++...|+|..|+..|+..-...|.
T Consensus       660 ~k-------wqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  660 SK-------WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             HH-------HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            65       3334455556677777777777655444444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.90  E-value=2e-20  Score=199.22  Aligned_cols=301  Identities=15%  Similarity=0.125  Sum_probs=238.8

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAW  452 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~  452 (781)
                      |.+.+.|..++....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|..     ....
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i  283 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI  283 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            33467888899999999999999999999999999999999999999999999999999999999999932     1233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-------------
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE-------------  515 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~p~-------------  515 (781)
                      ...+..+...++-+.|++.++.++....  ...+-+..++.++.....++.|..........  .++             
T Consensus       284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~  363 (895)
T KOG2076|consen  284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE  363 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence            4457778888888999999999998322  23456778899999999999999888766551  011             


Q ss_pred             -------------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          516 -------------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       516 -------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                                   +..+ ...++.+....++..+++..+..--...| +.+..+..++..+...|++.+|+.+|..+...
T Consensus       364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~  443 (895)
T KOG2076|consen  364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR  443 (895)
T ss_pred             ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence                         1122 44455555555566666655543333224 34789999999999999999999999999877


Q ss_pred             CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC--cHHHHH
Q 003991          581 DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFV  657 (781)
Q Consensus       581 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~  657 (781)
                      .+ ++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++....-++.  ...+|.
T Consensus       444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~  523 (895)
T KOG2076|consen  444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE  523 (895)
T ss_pred             ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence            65 457799999999999999999999999999999999999999999999999999999999988733333  333455


Q ss_pred             HHHHHHHHHHHHHHHHhchhh
Q 003991          658 LQCLAFYQKEIALYTASKINS  678 (781)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~  678 (781)
                      ......+.+...+...|+.++
T Consensus       524 ~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  524 PERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhHHH
Confidence            555566777777777777766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.89  E-value=7.9e-23  Score=208.15  Aligned_cols=264  Identities=20%  Similarity=0.225  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ..+.+|..++..|++++|++++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            4457799999999999999999766554  488999999999999999999999999999999999988888888888 7


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      ..+++++|+.+++++.+..+ ++..+.....++...++++++...++++....  +.++..+..+|.++...|++++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988764 56777888889999999999999999987655  6788999999999999999999999


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (781)
                      .|+++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          619 IECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      +.++..+|.++...|++++|..+++++++.
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=5.1e-19  Score=171.78  Aligned_cols=294  Identities=18%  Similarity=0.132  Sum_probs=273.1

Q ss_pred             HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 003991          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (781)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (781)
                      +..+....++.......-|.++..+..+|.+++..|++.+|+..|+++.-.+|.+..+.-..|..+...|+++.-.....
T Consensus       211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~  290 (564)
T KOG1174|consen  211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD  290 (564)
T ss_pred             ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence            33445555677777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (781)
Q Consensus       440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  519 (781)
                      ..+........-|+--+...+...++..|+.+-++++..+|++..++...|.++...++.++|+-.|+.++.+.|...+.
T Consensus       291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~  370 (564)
T KOG1174|consen  291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI  370 (564)
T ss_pred             HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence            99998877888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      |..+-.+|...|.+.+|.-.-+.+++..|.+..++..+| .++. .----++|.+++++++.+.|....+...++.++..
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~  450 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV  450 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999886 4433 33446899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .|.++.++..+++.+...|+ ...+..+|.++...+.+++|+.+|..|+.++|++..
T Consensus       451 Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  451 EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            99999999999999999888 578999999999999999999999999999999865

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.88  E-value=5.6e-18  Score=173.52  Aligned_cols=318  Identities=14%  Similarity=0.087  Sum_probs=213.6

Q ss_pred             HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (781)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (781)
                      +.+.....|.....|+..+......|+...|+.++.++++.+|++.++|+....+.+...+++.|..+|.++....|. .
T Consensus       573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e  651 (913)
T KOG0495|consen  573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E  651 (913)
T ss_pred             HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c
Confidence            444555566666666666666666666666666666666666666666666666666666666666666666664443 3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      .+|+.-+.....+++.++|+..++++++..|.....|..+|+++...++.+.|...|...++..|..+..|..++.+-..
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      .|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.++++..|.+...|..-..+.-.-++-..++..++
T Consensus       732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk  811 (913)
T KOG0495|consen  732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK  811 (913)
T ss_pred             hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666555554444444444344443333


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  689 (781)
                          ....++.++...|.++....+++.|.++|.++++.+|++.++|.+.-..+.       ..|.-+.-...+.+....
T Consensus       812 ----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-------~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  812 ----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-------RHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             ----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-------HhCCHHHHHHHHHHHhcc
Confidence                334567888999999999999999999999999999999998765433322       345455556677788888


Q ss_pred             CcccHHHHHH
Q 003991          690 DPLFKEYWCK  699 (781)
Q Consensus       690 ~p~~~~~~~~  699 (781)
                      +|.+.+.|..
T Consensus       881 EP~hG~~W~a  890 (913)
T KOG0495|consen  881 EPTHGELWQA  890 (913)
T ss_pred             CCCCCcHHHH
Confidence            9999988854

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=9.9e-20  Score=193.95  Aligned_cols=303  Identities=22%  Similarity=0.236  Sum_probs=249.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|.++|+.+++....-.|-.++|.+.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            66788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK  535 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~  535 (781)
                      ++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|...     ......+..+...++-+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999998321     222334666667777788


Q ss_pred             HHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q 003991          536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY----------------------------------  579 (781)
Q Consensus       536 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------  579 (781)
                      |++.++.++...  .....-+..++.+++....++.|.......-.                                  
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            888887777622  12233444555555555555555554433222                                  


Q ss_pred             -----------------------------hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHHHHHHH
Q 003991          580 -----------------------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC  628 (781)
Q Consensus       580 -----------------------------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~  628 (781)
                                                   ..| +.+..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                         011 33566889999999999999999999999987664 56799999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (781)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  690 (781)
                      |..+|.+++|+.+|++++.+.|++.+       +...++..+..+|+.++|+..+.....-+
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D-------~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLD-------ARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchh-------hhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            99999999999999999999999999       55556666677889999999887655434

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=1.3e-19  Score=201.33  Aligned_cols=265  Identities=14%  Similarity=0.001  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCcHH
Q 003991          383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSAGE  450 (781)
Q Consensus       383 ~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~  450 (781)
                      .++..|...+..   +.+++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.
T Consensus       260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~  339 (553)
T PRK12370        260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ  339 (553)
T ss_pred             HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence            455666655443   4567899999999999999999998888887644         3478899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  530 (781)
                      ++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            99899999989999999999999999999999889999999999999999999999999999998887766777777788


Q ss_pred             CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      |++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++..+...|+  +|...++
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~  497 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR  497 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence            88999999998888775 67788888889998889999999999988888888888888888888888774  6777676


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      +.++.....+.-....+.+|.-.|+.+.+..+ +++.+.+.
T Consensus       498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            66654333332333377788888888888777 66665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=1.4e-17  Score=187.96  Aligned_cols=399  Identities=11%  Similarity=-0.008  Sum_probs=306.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhcccchhh--hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 003991           46 LCSLRNWSKAIRILDSLLAQSYEIQD--ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (781)
Q Consensus        46 ~~~~g~~~~A~~~y~~ai~~~~~~~~--~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  123 (781)
                      +...|++++|+.++++++.. .+...  +...|.++..+|+|++|+..++++++.+|+++.++..++.++...|+.++|+
T Consensus        78 ~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl  156 (822)
T PRK14574         78 AGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL  156 (822)
T ss_pred             HHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence            34679999999999999922 23333  4444779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccccC
Q 003991          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (781)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (781)
                      ..+++++...|..... ..+..+                ..                                       
T Consensus       157 ~~l~~l~~~dp~~~~~-l~layL----------------~~---------------------------------------  180 (822)
T PRK14574        157 KQATELAERDPTVQNY-MTLSYL----------------NR---------------------------------------  180 (822)
T ss_pred             HHHHHhcccCcchHHH-HHHHHH----------------HH---------------------------------------
Confidence            9999994433331110 000000                00                                       


Q ss_pred             CcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcccC
Q 003991          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (781)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (781)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (822)
T PRK14574        181 --------------------------------------------------------------------------------  180 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHHHH
Q 003991          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (781)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (781)
                                                                                           +     .....
T Consensus       181 ---------------------------------------------------------------------~-----~~~~~  186 (822)
T PRK14574        181 ---------------------------------------------------------------------A-----TDRNY  186 (822)
T ss_pred             ---------------------------------------------------------------------h-----cchHH
Confidence                                                                                 0     00000


Q ss_pred             hhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHc---------c---
Q 003991          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI--GRGTARAFQ---------R---  429 (781)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~la~~~~~~---------g---  429 (781)
                       .....+.+++...|.+.+.+..+...+...|-...|.++..+--.........++  ..+.-..+.         +   
T Consensus       187 -~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~  265 (822)
T PRK14574        187 -DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD  265 (822)
T ss_pred             -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence             0222566777889999999999999999999999998776653322111111111  111111111         1   


Q ss_pred             CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Q 003991          430 ELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNA  501 (781)
Q Consensus       430 ~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~  501 (781)
                      -.+.|+..++..+...+..+       .+....-.++...|++.+++..|+.+.... |--..+....|..|+..+++++
T Consensus       266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k  345 (822)
T PRK14574        266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK  345 (822)
T ss_pred             HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence            24567777777777433322       234445566778899999999999987655 2245678889999999999999


Q ss_pred             HHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------------ccHHHHHHHHHH
Q 003991          502 AVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEAWGHLTQF  560 (781)
Q Consensus       502 A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~  560 (781)
                      |+.+|+.++...|      ........|...+...+++++|..++.+.....|               +...+...++.+
T Consensus       346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            9999999988653      2333457788999999999999999999988544               336778889999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      +...|++.+|++.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...+|.++..+|++.+|..
T Consensus       426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~  505 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL  505 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCcHHHH
Q 003991          641 DYDAALDLELDSMEKF  656 (781)
Q Consensus       641 ~~~~al~~~p~~~~~~  656 (781)
                      ....+++..|+++...
T Consensus       506 ~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        506 LTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHHHhhCCCchhHH
Confidence            9999999999998644

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.86  E-value=1.8e-21  Score=198.10  Aligned_cols=267  Identities=21%  Similarity=0.208  Sum_probs=121.8

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991          410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (781)
Q Consensus       410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (781)
                      ..|.  ...+.+|.+++..|++++|++.+.+.+..  .|++...|..+|.+....++++.|+..|++++..++.++..+.
T Consensus         5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~   82 (280)
T PF13429_consen    5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455  23346799999999999999999766544  4888999999999999999999999999999999999888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcC
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLA  565 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g  565 (781)
                      .++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...+.++....  +.++..|..+|.++.+.|
T Consensus        83 ~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G  160 (280)
T PF13429_consen   83 RLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG  160 (280)
T ss_dssp             -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred             ccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence            88888 799999999999999987664 46667778888999999999999999977655  677899999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                      +.++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|+++
T Consensus       161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence            99999999999999999999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       646 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      ++.+|+++.       +....|.++...|+.++|+....++.
T Consensus       241 ~~~~p~d~~-------~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  241 LKLNPDDPL-------WLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHSTT-HH-------HHHHHHHHHT----------------
T ss_pred             ccccccccc-------cccccccccccccccccccccccccc
Confidence            999999998       55666677778888999988876553

>TIGR00540 hemY_coli hemY protein

Probab=99.86  E-value=2.1e-18  Score=184.70  Aligned_cols=298  Identities=14%  Similarity=0.029  Sum_probs=252.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR  459 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~  459 (781)
                      .......|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            445577899999999999999999999999999888889999999999999999999999999999885 5666679999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK  535 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~----~la~~~~~~g~~~~  535 (781)
                      ...|+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+....++....    .........+..++
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988655443321    22222234445555


Q ss_pred             HHHHHHHHHhhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Q 003991          536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       536 A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~  609 (781)
                      +...+.++....|    +++..+..++..+...|++++|...++++++..|++....  ..........++...++..++
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            6678888888777    5899999999999999999999999999999999887532  223333445688999999999


Q ss_pred             HhhccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991          610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (781)
Q Consensus       610 ~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  685 (781)
                      ++++..|+++  ..+..+|.++.+.|++++|.++|+  .+++..|++..        +...|..+...|+.++|..++++
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--------~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--------LAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999  889999999999999999999999  68888998764        33557777788888888888766


Q ss_pred             h
Q 003991          686 D  686 (781)
Q Consensus       686 ~  686 (781)
                      +
T Consensus       396 ~  396 (409)
T TIGR00540       396 S  396 (409)
T ss_pred             H
Confidence            5

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=7.4e-19  Score=165.55  Aligned_cols=269  Identities=14%  Similarity=0.056  Sum_probs=205.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          391 QVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ++...+...|-..+...++.+   |.       +......+|.||+.+|.+.+|.+.++.+++..| .++.+..++.+|.
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~  267 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQ  267 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHH
Confidence            445566666665555555432   11       122234678888888888888888888887655 4667777888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  540 (781)
                      ...+...|+..+...++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|..|+..++.+-|+.+|
T Consensus       268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY  347 (478)
T KOG1129|consen  268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY  347 (478)
T ss_pred             HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888887777788888888888888888


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      ++.++..-.+++.+.++|.+.+..++++-++..|++++....   .-.++|+++|.+....|++..|..+|+-++..+++
T Consensus       348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            888888888888888888888888888888888888876543   23567888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      +.+++.++|.+-.+.|+.++|..++..|-...|+-.+...+++
T Consensus       428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ  470 (478)
T ss_pred             hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence            8888888888888888888888888888888887766655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.86  E-value=2.7e-18  Score=180.00  Aligned_cols=289  Identities=15%  Similarity=0.113  Sum_probs=247.9

Q ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (781)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (781)
                      .-+.+.+..+..|.++.+.+.++..+..+++.+.|.++.+++++. ..+++.+|..++.++...+++.+|+...+.++..
T Consensus       463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            344677888889999999999999999999999999999999999 5568899999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 003991          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL---------HERGIVNFKFKDFNAAVEDLSACVKL---  512 (781)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~~~~~~~A~~~~~~a~~~---  512 (781)
                      .|+|.........+-...++.++|+..+...+........+-         ...+......++..+|+..++++...   
T Consensus       543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~  622 (799)
T KOG4162|consen  543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS  622 (799)
T ss_pred             hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence            999888777777777889999999999988887654322222         22222333344555666655554322   


Q ss_pred             -----C-----C------CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991          513 -----D-----K------EN-------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (781)
Q Consensus       513 -----~-----p------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  569 (781)
                           .     |      ..       ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|+..+
T Consensus       623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence                 0     1      11       24567788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      |.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.++.++|+.++|.++|..+++
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888888  99999999999999999999999999999999999999999


Q ss_pred             hccCcHH
Q 003991          648 LELDSME  654 (781)
Q Consensus       648 ~~p~~~~  654 (781)
                      +.+.+|-
T Consensus       783 Le~S~PV  789 (799)
T KOG4162|consen  783 LEESNPV  789 (799)
T ss_pred             hccCCCc
Confidence            9998863

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=8.3e-19  Score=194.85  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHH
Q 003991          418 LIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI  485 (781)
Q Consensus       418 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~  485 (781)
                      ++..|..+...   +.+++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            34455444332   4578999999999999999999999999887644         34899999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (781)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  565 (781)
                      +..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888777777888899


Q ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       566 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      ++++|+..+++++... |+++.++..+|.++...|++++|...+.+.....|....++..++..|...|+  .|...+++
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~  498 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE  498 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence            9999999999999875 78899999999999999999999999999999999988899999999998884  77777776


Q ss_pred             HHhh
Q 003991          645 ALDL  648 (781)
Q Consensus       645 al~~  648 (781)
                      .++.
T Consensus       499 ll~~  502 (553)
T PRK12370        499 FLES  502 (553)
T ss_pred             HHHH
Confidence            6554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.4e-19  Score=174.48  Aligned_cols=301  Identities=19%  Similarity=0.226  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      -.+++.+..++.++++.+|..|+..|+.||+.+ .+...|.|||.++..+++|++|..++++.+.++|+..+++.+.|.|
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c  126 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC  126 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence            355777788999999999999999999999999 6667789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH  192 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (781)
                      +..+++.-+|...|+-.      +           +. . +.+.+     ..+                           
T Consensus       127 ~~a~~~~i~A~~~~~~~------~-----------~~-~-~anal-----~~~---------------------------  155 (486)
T KOG0550|consen  127 HLALSDLIEAEEKLKSK------Q-----------AY-K-AANAL-----PTL---------------------------  155 (486)
T ss_pred             hhhhHHHHHHHHHhhhh------h-----------hh-H-Hhhhh-----hhh---------------------------
Confidence            99999999999776633      0           00 0 00000     000                           


Q ss_pred             CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991          193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE  272 (781)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (781)
                                                             .   .....                                
T Consensus       156 ---------------------------------------~---~~~~s--------------------------------  161 (486)
T KOG0550|consen  156 ---------------------------------------E---KLAPS--------------------------------  161 (486)
T ss_pred             ---------------------------------------h---ccccc--------------------------------
Confidence                                                   0   00000                                


Q ss_pred             ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991          273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW  352 (781)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (781)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (486)
T KOG0550|consen  162 --------------------------------------------------------------------------------  161 (486)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 003991          353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE  432 (781)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  432 (781)
                                           ....|....+.+..+.++...|++++|...--.++++++.+..+++..|.+++..++.+
T Consensus       162 ---------------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~  220 (486)
T KOG0550|consen  162 ---------------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD  220 (486)
T ss_pred             ---------------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence                                 00002224455667889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                      .|+..|++++.++|++..+-..    +                  ..|.--..+..-|.-.++.|++..|.++|..+|.+
T Consensus       221 ka~~hf~qal~ldpdh~~sk~~----~------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  221 KAINHFQQALRLDPDHQKSKSA----S------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             HHHHHHhhhhccChhhhhHHhH----h------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            9999999999999987542110    0                  01111233444445555555555555555555555


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          513 DKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       513 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      +|++    ...|.+++.+...+|+..+|+.-.+.++.+++....++...|.++..++++++|++.|+++++...
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5543    234455555555555555555555555555555555555555555555555555555555554433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=9.2e-20  Score=185.51  Aligned_cols=255  Identities=18%  Similarity=0.211  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      -+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            35678888888888888888998888899888999999998888888888899999999999988888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK  534 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~  534 (781)
                      .-.+|+.++.+.+...|.....-..       ...-......+..-.+.|..+....|  .++++...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            8888888888888877643221110       00000111123334455555666666  56777777777777777777


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      +|+++|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|.+++.+|.|.+|+++|-.+|.+
T Consensus       448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777766


Q ss_pred             CCCC----------HHHHHHHHHHHHHhCCHHHH
Q 003991          615 DPSN----------IECLYLRASCYHAIGEYREA  638 (781)
Q Consensus       615 ~p~~----------~~~~~~la~~~~~~g~~~~A  638 (781)
                      .+..          ..+|-.|-.++..+++.+-+
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            4431          13555555555555555533

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.2e-18  Score=167.41  Aligned_cols=304  Identities=17%  Similarity=0.103  Sum_probs=274.5

Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          385 LSRGIAQVNEGKY--ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       385 ~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      ...+.+.+..++.  ..+..++-.....-|+|...+..+|.+++..|++.+|+..|+++..++|......-..|.++...
T Consensus       200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e  279 (564)
T KOG1174|consen  200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE  279 (564)
T ss_pred             HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence            3344444445544  44555566666778999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      |+++.-.......+........-|+.-+..++..+++..|+.+-+++|..+|.+..++...|..+...|+.++|+-.|+.
T Consensus       280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~  359 (564)
T KOG1174|consen  280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT  359 (564)
T ss_pred             cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence            99999999999999988888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHhhccCCCCHH
Q 003991          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG-LLLH-GLGQHKKAIKDLSSGLGIDPSNIE  620 (781)
Q Consensus       543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~  620 (781)
                      +..+.|...+.|..+..+|...|.+.+|...-+.++...|.++.++..+| .++. .-.--++|...+++++.+.|....
T Consensus       360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~  439 (564)
T KOG1174|consen  360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP  439 (564)
T ss_pred             HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence            99999999999999999999999999999999999999999999999886 4443 334568999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      +-..+|.++...|++++++..+++++...||+.        ....+|...-..+.+.+|+.+|.+++.++|.....
T Consensus       440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--------LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHhhccccH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            999999999999999999999999999999874        45566777888899999999999999999988765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=168.82  Aligned_cols=245  Identities=14%  Similarity=0.127  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      ....+|.+|+..|-+.+|.+.++..++..| .++.+..++.+|....+...|+..+...+...|.+...+...++++..+
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            345789999999999999999999999876 4889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      +++++|.++|+.+++..|.+.++...+|.-|+..++.+-|+.+|++.+...-.+++.+.++|.+++..++++-++..|++
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991          543 AIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       543 al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (781)
                      ++....+   -.++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            9987542   3789999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 003991          620 ECLYLRASC  628 (781)
Q Consensus       620 ~~~~~la~~  628 (781)
                      +..++++.+
T Consensus       464 E~~~Nl~~~  472 (478)
T KOG1129|consen  464 EVTTNLQFM  472 (478)
T ss_pred             ccccceeEE
Confidence            887777644

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.84  E-value=1.4e-17  Score=177.18  Aligned_cols=297  Identities=12%  Similarity=0.033  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQA  458 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~  458 (781)
                      ....+..|...+..|+|+.|.+.+.+..+..+ ++..++.+ +.+....|+++.|..++.++.+..|++.. .....+.+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            44567788999999999999988887665443 34554444 66669999999999999999999998854 33455899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT--------YLGLALSSI  530 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~--------~la~~~~~~  530 (781)
                      +...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++....        .+.......
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999988766544222        222222223


Q ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      .+.+.....++..-...|+++.+...++..+...|+.++|...++++++. +.++......+.+  ..++.++++..+++
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~  319 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ  319 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence            33444555555554556778999999999999999999999999999994 4456555555544  44999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (781)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  689 (781)
                      .++..|+++..+..+|.++...|++++|..+|+++++..|++..        +...+..+...|+.++|..+|+++..+
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--------~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--------YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999753        455677778889999999999877553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=2.6e-18  Score=174.87  Aligned_cols=230  Identities=17%  Similarity=0.164  Sum_probs=133.3

Q ss_pred             CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991          395 GKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (781)
Q Consensus       395 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  470 (781)
                      +..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            455666777777765332   2 245667777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (781)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (781)
                      .|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            7777777777777777777777777777777777777777777766532111 122334556666666665554432211


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL  622 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  622 (781)
                        .|. .+.++...|+...+ ..++.+       .++.|..+++|+.+|.++...|++++|+.+|+++++.+| +..+..
T Consensus       199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence              111 23333344444322 122222       233344455566666666666666666666666666554 334444


Q ss_pred             HHHHHHH
Q 003991          623 YLRASCY  629 (781)
Q Consensus       623 ~~la~~~  629 (781)
                      +.+..+.
T Consensus       275 ~~~~e~~  281 (296)
T PRK11189        275 YALLELA  281 (296)
T ss_pred             HHHHHHH
Confidence            4443333

>TIGR00540 hemY_coli hemY protein

Probab=99.83  E-value=1.8e-17  Score=177.40  Aligned_cols=278  Identities=14%  Similarity=0.024  Sum_probs=235.6

Q ss_pred             HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      +....+..|...-.++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++..+..|++
T Consensus       107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~  186 (409)
T TIGR00540       107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH  186 (409)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3445566777788888999999999999999999999999999875 466667999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CCHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAY  520 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~  520 (781)
                      +.++..++.++...|++++|...+.+..+....++....    ....-+...+..+++...+.++....|    +++..+
T Consensus       187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~  266 (409)
T TIGR00540       187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK  266 (409)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence            999999999999999999999999999988654444321    222222444555566678888888777    589999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLH  596 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~  596 (781)
                      ..++..+...|++++|.+.++++++..|++....  ..........++.+.+++.++++++..|+++  .....+|+++.
T Consensus       267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~  346 (409)
T TIGR00540       267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM  346 (409)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999987532  2233334446889999999999999999999  88899999999


Q ss_pred             HCCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          597 GLGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       597 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      +.|++++|.++|+  .+++..|++. .+..+|.++.++|+.++|.++|++++..
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999  6778888754 4669999999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=3.1e-19  Score=181.74  Aligned_cols=233  Identities=18%  Similarity=0.249  Sum_probs=208.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (781)
                      +..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHH
Q 003991          499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK  569 (781)
Q Consensus       499 ~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~  569 (781)
                      -.+|+.++.+-+...|........       ..........+..-.+.|..+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887754322110       00011111223455677777777788  689999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      |+.+|+.++...|++...|..||-.+..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++|-.||.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 003991          650 LD  651 (781)
Q Consensus       650 p~  651 (781)
                      +.
T Consensus       529 ~k  530 (579)
T KOG1125|consen  529 RK  530 (579)
T ss_pred             hc
Confidence            76

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=4.2e-18  Score=173.38  Aligned_cols=224  Identities=23%  Similarity=0.247  Sum_probs=184.0

Q ss_pred             HccCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 003991          427 FQRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (781)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (781)
                      ..+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34577889999999996444   3 3678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      +..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999874222 12234557899999999988775533


Q ss_pred             CCHHHHHHHHHHHHHCCCHHH--HHHHHHHh----hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-CcHH
Q 003991          583 RFSKAYHLRGLLLHGLGQHKK--AIKDLSSG----LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSME  654 (781)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~  654 (781)
                      ...  |. .+.+....|+..+  ++..+.+.    .++.|..+++|+++|.++..+|++++|+.+|+++++++| +..+
T Consensus       197 ~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        197 KEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             ccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            222  22 3555556666543  33333332    345566778999999999999999999999999999997 5544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.5e-18  Score=169.03  Aligned_cols=271  Identities=26%  Similarity=0.314  Sum_probs=243.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ++.....|..++...+|.+|+..+..+++..|+++..|...+.+++..|+|++|....++.+.+.|.....+...+.++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            34455678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          461 ALGESVEAIQDLSKAL------------EFE------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  522 (781)
                      .+++..+|...++..-            .+.      |....+....+.++...+++++|...--..+++++.+..+++.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v  208 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV  208 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence            9998888876665221            111      2223456677889999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK  586 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~  586 (781)
                      .|.++...++.+.|+..|++++.++|+.            ...+..-|+-.++.|++..|.++|..+|.++|++    ..
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            9999999999999999999999999976            3456778899999999999999999999999975    55


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .|.+++.+..++|+..+|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            78899999999999999999999999999999999999999999999999999999999998766

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.81  E-value=2.2e-16  Score=181.84  Aligned_cols=293  Identities=11%  Similarity=-0.029  Sum_probs=239.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQA  458 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  458 (781)
                      +...+..+...|.+.|++++|..+|++..   +.+...|..+...|...|++++|+..|.+..... ..+...+..+...
T Consensus       258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a  334 (697)
T PLN03081        258 DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI  334 (697)
T ss_pred             cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            45566677888999999999999998763   4567889999999999999999999999987643 2345678888899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      +...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+   .+...|..+...|...|+.++|+
T Consensus       335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~  411 (697)
T PLN03081        335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAV  411 (697)
T ss_pred             HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHH
Confidence            999999999999999998875 45677888999999999999999999998753   35678899999999999999999


Q ss_pred             HHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          538 EAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       538 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      +.|++..... ..+...+..+...+...|..++|..+|+...+..+  .+...|..+...+.+.|++++|.+.+++. ..
T Consensus       412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~  490 (697)
T PLN03081        412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PF  490 (697)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence            9999987653 22356677888888999999999999999876432  23567888999999999999999998875 23


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      .|+ ..+|..+...+...|+++.|...+++++++.|++...       |..+...+...|++++|...++...
T Consensus       491 ~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~-------y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        491 KPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN-------YVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             CCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            444 6778899999999999999999999999999988763       4445556667888999988876543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.81  E-value=5.8e-16  Score=162.75  Aligned_cols=292  Identities=19%  Similarity=0.182  Sum_probs=247.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSK  474 (781)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (781)
                      ...++++.++++++.+|+|+.+.+.++.-|..+++.+.|..+..++++. ..+++.+|..++.++...+++.+|+...+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999 456789999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHh
Q 003991          475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---------LGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---------la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      ++.-.|++.........+-...++.++|+..+...+.+-.....+...         .+......++..+|+..++++..
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            999999988887778888888999999999988887764433222222         22222333455555555554432


Q ss_pred             hC-------------c--------cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991          546 LD-------------R--------NF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       546 ~~-------------~--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (781)
                      .-             |        ..     ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~  698 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG  698 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence            20             1        11     3567788999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN  677 (781)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (781)
                      ++++|.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.+++       +||..|......|+.+
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWYYLGEVFKKLGDSK  771 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHccchH
Confidence            99999999999999999999999999999999999988888  99999999999999       6666677778889999


Q ss_pred             hHHHHHhhhcCCCcccH
Q 003991          678 SEFCWFDIDGDIDPLFK  694 (781)
Q Consensus       678 ~A~~~~~~~~~~~p~~~  694 (781)
                      .|..+|.-+.++++..+
T Consensus       772 ~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  772 QAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHHhhccCCC
Confidence            99999998888776443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.81  E-value=9.8e-18  Score=179.40  Aligned_cols=287  Identities=15%  Similarity=0.080  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--------------------HHHHHHHH
Q 003991          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--------------------EAWKRRGQ  457 (781)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------~~~~~la~  457 (781)
                      ..|..+|+.++..+|.+   ....|.+......|..|...+........++.                    ...+..+.
T Consensus       385 ~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~  461 (1238)
T KOG1127|consen  385 SWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENS  461 (1238)
T ss_pred             HHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHH
Confidence            34444455555444443   34455555566666666666655554431111                    11111111


Q ss_pred             H-----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003991          458 A-----RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (781)
Q Consensus       458 ~-----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  532 (781)
                      .     -....+...|...|-+++.+++....++..+|.+|...-+...|..+|.+|.++++.+..+.-..+..|....+
T Consensus       462 ~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~  541 (1238)
T KOG1127|consen  462 EFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST  541 (1238)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence            1     12234588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          533 YKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      ++.|......+-+..|-.  ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.+
T Consensus       542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k  621 (1238)
T KOG1127|consen  542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK  621 (1238)
T ss_pred             HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence            999999977777776654  456777999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      +..++|.+....+..+.+...+|+|.+|+..+...+............++..+...+..++..|-..+|...+++.+
T Consensus       622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi  698 (1238)
T KOG1127|consen  622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI  698 (1238)
T ss_pred             hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999988777666667777777777777777776666666665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=1.5e-17  Score=150.39  Aligned_cols=205  Identities=20%  Similarity=0.108  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      .+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..++.
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            35666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (781)
                      +|++++|...|++++..  .+.....+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|+|..|..+
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            77777777777777763  2344667777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +++.....+-..+.+.....+-...|+-+.|-++=.+.....|...+
T Consensus       196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            77777766666777777777777777777777777777777777655

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=2.2e-17  Score=149.39  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ..+.+.+|..|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46777888888888999999999999998898888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      .+|++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888888864  344577888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (781)
                      +++......+-....+.....+-...|+-+.+-++=.+.....|...+.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            8887777766666666666677777788777777777777777765543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=2.5e-17  Score=163.62  Aligned_cols=201  Identities=18%  Similarity=0.139  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34555556666666666666666666666666656666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      ..|++++|+..+.+++...  +.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++++|+.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666532  33455666677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            7777777767677777777777777777777777766665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=1.6e-16  Score=169.12  Aligned_cols=265  Identities=13%  Similarity=0.020  Sum_probs=221.9

Q ss_pred             HHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          381 VDFRL-SRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       381 ~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      +..++ ..+......|+++.|..+|.++.+.+|++..+. ...+.++...|+++.|+..++++.+..|+++.++..++.+
T Consensus       117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44444 446666999999999999999999999975443 4559999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  530 (781)
                      |...|++++|+..+.+..+..+.++....        .+........+.+.....++......|+++.+...++..+...
T Consensus       197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~  276 (398)
T PRK10747        197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC  276 (398)
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence            99999999999999999988776544222        2222222333445555555555556678999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      |+.++|...++++++. +.++......+.+  ..++.+++++.+++.++..|+++..+..+|.++...+++++|.++|++
T Consensus       277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999995 4455555445544  459999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus       354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999984 557789999999999999999999998864

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.80  E-value=9e-15  Score=170.01  Aligned_cols=268  Identities=14%  Similarity=0.021  Sum_probs=231.6

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWK  453 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~  453 (781)
                      .+...|..+...|.+.|++++|+.+|.++.+.. .-+...|..+...+.+.|++++|...|.++...    .| +...+.
T Consensus       505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn  583 (1060)
T PLN03218        505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG  583 (1060)
T ss_pred             CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence            467888899999999999999999999987653 124778999999999999999999999999763    34 456788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIG  531 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g  531 (781)
                      .+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+..... .-+...+..+...+...|
T Consensus       584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G  663 (1060)
T PLN03218        584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG  663 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            88899999999999999999999876 4467899999999999999999999999998763 224678888999999999


Q ss_pred             CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003991          532 EYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (781)
Q Consensus       532 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (781)
                      ++++|..++..+.+.. +.+...+..+...|.+.|++++|...|++....  .| +...|..+...|.+.|++++|+++|
T Consensus       664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf  742 (1060)
T PLN03218        664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVL  742 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998864 345788999999999999999999999988653  34 5778999999999999999999999


Q ss_pred             HHhhcc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          609 SSGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       609 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +++...  .|+ ...|..+...+.+.|++++|..++.++++..
T Consensus       743 ~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        743 SEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            988754  444 6778888899999999999999999998864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=4.2e-17  Score=161.98  Aligned_cols=201  Identities=21%  Similarity=0.241  Sum_probs=148.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      .+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            36677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      ...|++++|+..+.+++...  +.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888877643  3345566666777777777777777777777777666666666777777777777777


Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      ..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            7776666666666666666666666666666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=99.79  E-value=3.7e-17  Score=165.30  Aligned_cols=217  Identities=17%  Similarity=0.134  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      ..++-.+-.++...+.+++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++
T Consensus        37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            3444444444555566666666666666666666666666666666665 456666666666666666666666666666


Q ss_pred             HhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc---CCH-
Q 003991          494 FKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS-  567 (781)
Q Consensus       494 ~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~-  567 (781)
                      ...|+.  ++++.++.++++.+|.+..+|..++.++...|+++++++++.++++.+|.+..+|..++.++...   |.+ 
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence            555542  45566666666666666666666666666666666666666666666666666666666655543   212 


Q ss_pred             ---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          568 ---EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       568 ---~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                         ++++.+..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.+|..
T Consensus       197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence               345555555566666665566555555554    2334455555555555555555555555555543

>PLN02789 farnesyltranstransferase

Probab=99.79  E-value=5.2e-17  Score=164.23  Aligned_cols=221  Identities=15%  Similarity=0.135  Sum_probs=198.5

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      .+...+++-..-.++...+.+++|+..+.++++.+|.+..+|..++.++..+| ++++++..+.+++..+|++..+|...
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            34445555444455677889999999999999999999999999999999998 68999999999999999999999999


Q ss_pred             HHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 003991          456 GQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---  530 (781)
Q Consensus       456 a~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---  530 (781)
                      +.++...|+.  ++++.++.++++.+|++..+|...+.++...|++++|++++.++++.+|.+..+|..++.++...   
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence            9999999874  78899999999999999999999999999999999999999999999999999999999998776   


Q ss_pred             CCH----HHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          531 GEY----KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       531 g~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      |.+    ++++.+..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.++..
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            333    578888899999999999999999999987    4566789999999999999999999999999975

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=5.3e-16  Score=146.77  Aligned_cols=270  Identities=17%  Similarity=0.153  Sum_probs=241.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHH
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQ  457 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~  457 (781)
                      --|..|..++-..+.++|++.|..+++.+|...++.+.+|..+...|..+.|+..-+..+. .|+.     ..+...+|.
T Consensus        37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~  115 (389)
T COG2956          37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR  115 (389)
T ss_pred             HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence            3466788888899999999999999999999999999999999999999999999887765 3443     347889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCC
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGE  532 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~  532 (781)
                      -|+..|-++.|...|....+....-..+...+..+|....+|++|++..++..++.+..     ...+..++..+....+
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999988766667899999999999999999999999999998876     3567778888888999


Q ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (781)
                      .+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|..+|+.++.+..+.++
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999976 667888999999999999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .+..++ +.+-..++..-....-.+.|..++.+-+...|+-..
T Consensus       276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g  317 (389)
T COG2956         276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG  317 (389)
T ss_pred             HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence            999887 566677777777777789999999999999998543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.78  E-value=9.5e-16  Score=176.61  Aligned_cols=265  Identities=10%  Similarity=-0.043  Sum_probs=230.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG  456 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  456 (781)
                      .+...|..+...|...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li  367 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV  367 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence            456788889999999999999999999987643 2246788899999999999999999999999875 55677888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKK  535 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~  535 (781)
                      ..|.+.|++++|...|+++.+   .+...|..+...|.+.|+.++|++.|++..... .-+...+..+...+...|..++
T Consensus       368 ~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~  444 (697)
T PLN03081        368 DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ  444 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence            999999999999999998754   366789999999999999999999999988753 2245667888889999999999


Q ss_pred             HHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          536 AEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       536 A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      |..+|+...+..+  .+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+.
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            9999999986432  23567888999999999999999998864 2333 467799999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      ..|++...|..++.+|...|++++|.+.++...+.
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999988765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=5.5e-19  Score=166.69  Aligned_cols=107  Identities=29%  Similarity=0.409  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHH
Q 003991           31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (781)
Q Consensus        31 ~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l  109 (781)
                      +....+++.|..||+++..++|++|+..|++||+++ .|+.+|+|||.+|.++|.|+.||++|+.||++||.+.++|.|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            466788999999999999999999999999999999 8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991          110 GCAFSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                      |.+|+.+|++++|+..|++||++.|+..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999988888775

>PLN03077 Protein ECB2; Provisional

Probab=99.78  E-value=4.6e-15  Score=175.26  Aligned_cols=292  Identities=11%  Similarity=-0.039  Sum_probs=240.7

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      ..+...+..+...|.+.|++++|.++|++..+   .+...|..+...|...|++++|+..|+++....+.+...+..+-.
T Consensus       421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~  497 (857)
T PLN03077        421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS  497 (857)
T ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence            34566777888899999999999999998643   356688899999999999999999999998765556667777778


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      .+...|..+.+.+.+..+++..- .+..+...+...|.+.|+.++|...|+..    +.+...|..+...|...|+.++|
T Consensus       498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A  573 (857)
T PLN03077        498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMA  573 (857)
T ss_pred             HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHH
Confidence            88899999999999999887643 24556677889999999999999999886    56788999999999999999999


Q ss_pred             HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          537 EEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       537 ~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      +..|++..+.  .|+ ...+..+...+...|..++|..+|+......+  .+...|..+..++.+.|++++|.+.+++. 
T Consensus       574 ~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-  651 (857)
T PLN03077        574 VELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-  651 (857)
T ss_pred             HHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence            9999998874  344 45566666788999999999999999884432  24678899999999999999999999986 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991          613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (781)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  686 (781)
                      ...|+ +.+|..+-..+...|+.+.|....+++++++|++...+..       ++..|...|++++|....+..
T Consensus       652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l-------l~n~ya~~g~~~~a~~vr~~M  717 (857)
T PLN03077        652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL-------LCNLYADAGKWDEVARVRKTM  717 (857)
T ss_pred             CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH-------HHHHHHHCCChHHHHHHHHHH
Confidence            35565 7778888888888999999999999999999999885444       444556778888887766543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.77  E-value=8.9e-14  Score=161.79  Aligned_cols=270  Identities=15%  Similarity=0.038  Sum_probs=220.1

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAW  452 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  452 (781)
                      ..+...+..+...+.+.|++++|.++|.++...    .|+ ...+..+...|.+.|++++|.+.|+.+.+.. +.+...|
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty  617 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY  617 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence            345778889999999999999999999999763    343 6788888999999999999999999999876 4567889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSS  529 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~  529 (781)
                      ..+...|.+.|++++|+..|.++...  .| +...+..+...+.+.|++++|..++..+.+.. +.+...+..+...|.+
T Consensus       618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k  696 (1060)
T PLN03218        618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN  696 (1060)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999876  44 46788899999999999999999999998865 3467889999999999


Q ss_pred             cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKD  607 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  607 (781)
                      .|++++|...|++..... ..+...|..+...|.+.|++++|+++|++..... ..+...|..+...+.+.|++++|..+
T Consensus       697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l  776 (1060)
T PLN03218        697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL  776 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999886542 2346789999999999999999999999887542 23467788888999999999999999


Q ss_pred             HHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          608 LSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       608 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      +.++++.... +...+..+-.++.  +++++|....+..+..++.
T Consensus       777 ~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g  819 (1060)
T PLN03218        777 LSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG  819 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc
Confidence            9999875332 2344444332222  3577777776666655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.76  E-value=1.5e-14  Score=149.22  Aligned_cols=436  Identities=14%  Similarity=0.110  Sum_probs=317.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCH
Q 003991           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (781)
Q Consensus        41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  119 (781)
                      -+.-+.|..++|.+.++..+.++... .++..+...|..+..+|+-++|-..++.++..||...--|+-+|.++....+|
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y   91 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY   91 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence            45667899999999999999999988 66777999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccc
Q 003991          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (781)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (781)
                      ++|+++|+.||.+.|++...+..+..+....... .+.                                          
T Consensus        92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~-~~~------------------------------------------  128 (700)
T KOG1156|consen   92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY-EGY------------------------------------------  128 (700)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-hhH------------------------------------------
Confidence            9999999999777777765554443333332211 000                                          


Q ss_pred             cccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCC
Q 003991          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (781)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (781)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (700)
T KOG1156|consen  129 --------------------------------------------------------------------------------  128 (700)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhh
Q 003991          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (781)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (781)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (700)
T KOG1156|consen  129 --------------------------------------------------------------------------------  128 (700)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHccCH
Q 003991          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PM-----YPEALIGRGTARAFQREL  431 (781)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-----~~~~~~~la~~~~~~g~~  431 (781)
                             ...-...++..|..-..|+..|..++..|++..|..+.+...+..   |.     ...+......+....|.+
T Consensus       129 -------~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~  201 (700)
T KOG1156|consen  129 -------LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL  201 (700)
T ss_pred             -------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence                   001122345577888999999999999999999999999887755   33     234566777888889999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACV  510 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~  510 (781)
                      ++|++.+..--..--+........+.++..++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-
T Consensus       202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls  281 (700)
T KOG1156|consen  202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS  281 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            999888776544444445566778999999999999999999999999999988888877776333444444 5555554


Q ss_pred             HhCCCCHHHH-------------HHHHHHH---HHc-------------CCHHHHHHHHHHHH-------hhC-------
Q 003991          511 KLDKENKSAY-------------TYLGLAL---SSI-------------GEYKKAEEAHLKAI-------QLD-------  547 (781)
Q Consensus       511 ~~~p~~~~~~-------------~~la~~~---~~~-------------g~~~~A~~~~~~al-------~~~-------  547 (781)
                      +..|......             ..+..++   ...             .+... ...+++.+       .-.       
T Consensus       282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D  360 (700)
T KOG1156|consen  282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLD  360 (700)
T ss_pred             hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCccc
Confidence            4444321000             0000000   000             11111 11222221       111       


Q ss_pred             -----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991          548 -----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (781)
Q Consensus       548 -----~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (781)
                           |..  ...++.++.-+-..|+++.|..+++.++...|..++.+...|.++...|++++|...+..+-+++-.|..
T Consensus       361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~  440 (700)
T KOG1156|consen  361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA  440 (700)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence                 111  2345678888889999999999999999999999999999999999999999999999999999877666


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH-HHHHH-HHHHHHHHHHhchhhHHHHHhhhc
Q 003991          621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL-QCLAF-YQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      +-..-|....+.++.++|.+...+.-+..-+-..-... .|+++ ..-|.+++.++++.+|+.-|....
T Consensus       441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            66678888999999999999888776655322222222 22222 244788888888888877665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.76  E-value=2.9e-16  Score=168.29  Aligned_cols=286  Identities=14%  Similarity=0.118  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (781)
                      ..|..+|..+...+++..|+..|+.++..+|.+..+|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHH
Q 003991          462 LGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLA  526 (781)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~-p~~~~~~~~la~~  526 (781)
                      .|.|.+|+..+...+......       .+++...+..+...|-..+|..+++++++.       . -++...|..++.+
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda  722 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA  722 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence            999999999998888765433       344555555555566666677777666543       1 2233333333332


Q ss_pred             HHH-----------------------cCCH---H---HHHHHHHHHHhhCcccHHHHHHHHHHHHH--------cCCHHH
Q 003991          527 LSS-----------------------IGEY---K---KAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEK  569 (781)
Q Consensus       527 ~~~-----------------------~g~~---~---~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~g~~~~  569 (781)
                      +.-                       .+..   +   -+.+++-..+.... .+..|+++|..|++        ..+...
T Consensus       723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~  801 (1238)
T KOG1127|consen  723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACT  801 (1238)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence            211                       1111   1   12233333333222 26678889888776        234458


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      |+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+++-|...|.++..++
T Consensus       802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd  880 (1238)
T KOG1127|consen  802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD  880 (1238)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence            9999999999999999999999988 666899999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHH
Q 003991          650 LDSMEKFVLQCLAFYQKEIA  669 (781)
Q Consensus       650 p~~~~~~~~~~~~~~~~~~~  669 (781)
                      |.+...|...++..-..|..
T Consensus       881 P~nl~~WlG~Ali~eavG~i  900 (1238)
T KOG1127|consen  881 PLNLVQWLGEALIPEAVGRI  900 (1238)
T ss_pred             chhhHHHHHHHHhHHHHHHH
Confidence            99988766665555444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=7.2e-15  Score=140.34  Aligned_cols=304  Identities=16%  Similarity=0.110  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (781)
                      +-.+.+|-..+..-.|++|++.|.+++..+|+....-..+|.||+++.-|+-+.+.+.--+...|+++-+...++...++
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR  231 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR  231 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence            45566777888888999999999999999999888888999999999999999999999999999998888777766655


Q ss_pred             c--CCHHH----------------HHHHHH----------HHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991          462 L--GESVE----------------AIQDLS----------KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSAC  509 (781)
Q Consensus       462 ~--g~~~~----------------A~~~~~----------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (781)
                      +  |+..+                +...++          -+++.-|.    -|++..++...|.++++.++|+...+. 
T Consensus       232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-  310 (557)
T KOG3785|consen  232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-  310 (557)
T ss_pred             hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-
Confidence            4  22211                111111          11222221    267888999999999999999988764 


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       510 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                        ++|..|.-+...|.+....|+--...+.+..+-+   +-.      +.......++.+++-..++++.+.+++..-..
T Consensus       311 --l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY  388 (557)
T KOG3785|consen  311 --LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY  388 (557)
T ss_pred             --cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              6899999999999999999886555555444332   211      22344567788888888999999999888888


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      ..++....+++|.+....|+|.+|.+.|-+.-...- +.......+|.||...|..+-|+..+-+.   + ++.+....+
T Consensus       389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~-t~~e~fsLL  464 (557)
T KOG3785|consen  389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---N-TPSERFSLL  464 (557)
T ss_pred             hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---C-CchhHHHHH
Confidence            888888999999999999999999999987765542 33445567999999999999999887542   2 222222211


Q ss_pred             HHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHH
Q 003991          660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW  697 (781)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  697 (781)
                          --.+..+|..++|--|...|+....++|. .++|
T Consensus       465 ----qlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW  497 (557)
T KOG3785|consen  465 ----QLIANDCYKANEFYYAAKAFDELEILDPT-PENW  497 (557)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence                12244455555555555566666666774 3445

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.74  E-value=3.8e-14  Score=146.35  Aligned_cols=282  Identities=17%  Similarity=0.154  Sum_probs=152.5

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN---  445 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  445 (781)
                      |+..++...|++...+..++....+.++++.....-.+.++..|..-..|+..+..+...|++..|....+...+..   
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~  176 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS  176 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            44455555555555555555555555555555555555555555555555555555555555555555554444432   


Q ss_pred             CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          446 PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       446 p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      |..     .........+....|.+++|++.+..--..--+........+.++..++++++|...|...+..+|++...+
T Consensus       177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy  256 (700)
T KOG1156|consen  177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY  256 (700)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence            211     123333344444455555555444433222222233444455555566666666666666666666655555


Q ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHHHHHHHH--------------H---HHHc-------------CCHHH
Q 003991          521 TYLGLALSSIGEYKKAE-EAHLKAIQLDRNFLEAWGHLTQ--------------F---YQDL-------------ANSEK  569 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~la~--------------~---~~~~-------------g~~~~  569 (781)
                      ..+-.++..-.+--+++ ..|...-+..|... +...++.              +   .+..             .+..+
T Consensus       257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k  335 (700)
T KOG1156|consen  257 EGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK  335 (700)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence            55544443222222233 33333333322210 0000000              0   0000             01110


Q ss_pred             HHHHHHHHHh-------hC------------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991          570 ALECLQQVLY-------ID------------KRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (781)
Q Consensus       570 A~~~~~~al~-------~~------------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (781)
                       ...+++.+.       -.            |..  .+.++.++.-+...|+++.|..+++.|+...|.-++.+...|.+
T Consensus       336 -~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI  414 (700)
T KOG1156|consen  336 -VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI  414 (700)
T ss_pred             -hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence             012222211       00            111  23456678888999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhccCc
Q 003991          629 YHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      +...|+.++|..++..+.+++-.|
T Consensus       415 ~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  415 FKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             HHhcCChHHHHHHHHHHHhccchh
Confidence            999999999999999999997543

>PLN03077 Protein ECB2; Provisional

Probab=99.73  E-value=3.4e-14  Score=167.96  Aligned_cols=298  Identities=10%  Similarity=-0.027  Sum_probs=229.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ..+..+-..+...|+++.|.+++..+.+... .+..++..+...|.+.|++++|...|++..+   .+...|..+...|.
T Consensus       390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~  466 (857)
T PLN03077        390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLR  466 (857)
T ss_pred             eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHH
Confidence            3444444567778888888888888887643 3456777888888888888888888887643   34567788888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ..|+.++|+..|+++....+.+...+..+-..+...|..+.+.+.+..+++..- .+......+...|.+.|++++|...
T Consensus       467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~  546 (857)
T PLN03077        467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ  546 (857)
T ss_pred             HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence            888888888888888765455666677777778888888888888888877642 3345566788999999999999999


Q ss_pred             HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---
Q 003991          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---  614 (781)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  614 (781)
                      |...    +.+...|..+...|...|+.++|+..|++....  .|+ ...+..+-..+.+.|..++|..+|+.+.+.   
T Consensus       547 f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi  621 (857)
T PLN03077        547 FNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI  621 (857)
T ss_pred             HHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence            9886    567889999999999999999999999998764  454 555666777899999999999999998843   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccH
Q 003991          615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK  694 (781)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  694 (781)
                      .|+ ...|..+..++.+.|++++|.+.+++. .+.|+. ..|..+       -..+...++.+.+....++..+++|+..
T Consensus       622 ~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-~~~~aL-------l~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        622 TPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-AVWGAL-------LNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-HHHHHH-------HHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence            343 678999999999999999999999886 356652 323222       2233446777778777878888999876


Q ss_pred             HHH
Q 003991          695 EYW  697 (781)
Q Consensus       695 ~~~  697 (781)
                      .+|
T Consensus       692 ~~y  694 (857)
T PLN03077        692 GYY  694 (857)
T ss_pred             chH
Confidence            664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.73  E-value=8.9e-16  Score=161.68  Aligned_cols=243  Identities=19%  Similarity=0.206  Sum_probs=159.9

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      ......|........+|..|..+|+|+.|+..|+.+++.        .|.-.....                        
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~------------------------  245 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLN------------------------  245 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHH------------------------
Confidence            334456666666666777777777777777777777765        222222223                        


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--
Q 003991          444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--  513 (781)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--  513 (781)
                                .+|.+|..++++.+|+..|++++.+        +|....++.+||.+|...|++.+|..++++++++.  
T Consensus       246 ----------~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  246 ----------ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             ----------HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence                      3444555555555555555555443        11223345555555555555555555555555432  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          514 ------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (781)
Q Consensus       514 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (781)
                            |.-...+..++.++..++++++|+.++++++++.        +.-+..+.++|.+|...|++++|.++|++++.
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  2223455667777777777777777777776652        23356778888888888888888888888886


Q ss_pred             hC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          580 ID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       580 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      +.        +.....+..+|..+.+.+++.+|...|.+++.+       .|+....+.+||.+|..+|++++|+++.++
T Consensus       396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            53        233556788888899999999888888888765       344457888999999999999999999988


Q ss_pred             HHhh
Q 003991          645 ALDL  648 (781)
Q Consensus       645 al~~  648 (781)
                      ++..
T Consensus       476 ~~~~  479 (508)
T KOG1840|consen  476 VLNA  479 (508)
T ss_pred             HHHH
Confidence            8753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=9.4e-15  Score=138.40  Aligned_cols=269  Identities=20%  Similarity=0.210  Sum_probs=228.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN  493 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~  493 (781)
                      +..|.-+.-..+.++|+..|..+++.+|...++...+|.++...|..+.|+..-+..+.. |+.     ..+...+|.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence            556777888899999999999999999999999999999999999999999988776654 433     44788999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHcCCHH
Q 003991          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE  568 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~  568 (781)
                      ...|-++.|...|...+....--..+...+..+|....+|++|++.-++...+.+..     ...+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999887666667899999999999999999999999999988765     567889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      .|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++.-.+..||.++|+.++...++.++.+
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985 67889999999999999999999999999


Q ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          648 LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       648 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      ..+...-.....-+..        ...-.+.|...+...+.-.|...-+
T Consensus       278 ~~~g~~~~l~l~~lie--------~~~G~~~Aq~~l~~Ql~r~Pt~~gf  318 (389)
T COG2956         278 TNTGADAELMLADLIE--------LQEGIDAAQAYLTRQLRRKPTMRGF  318 (389)
T ss_pred             ccCCccHHHHHHHHHH--------HhhChHHHHHHHHHHHhhCCcHHHH
Confidence            9887543222211111        1222344555555566667766555

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.72  E-value=4e-15  Score=156.76  Aligned_cols=221  Identities=18%  Similarity=0.172  Sum_probs=129.4

Q ss_pred             hhHHHHhhHHHHHHHhhcc----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Q 003991          358 TSNEAKRNKKFCVTRISKS----KSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTAR  425 (781)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~  425 (781)
                      ..+.+..-.+.++..+.+.    .+.-......+|..|...++|.+|+.+|++++.+        +|.-+.++.++|.+|
T Consensus       214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly  293 (508)
T KOG1840|consen  214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY  293 (508)
T ss_pred             cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3444455555555553322    3333444556999999999999999999999975        344456788999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Q 003991          426 AFQRELEAAISDFTEAIQSNP--------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--------NSADILHER  489 (781)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l  489 (781)
                      ...|++++|..++++++.+..        .-...+..++.++..++++++|..++.+++++.-        .-+..+.++
T Consensus       294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl  373 (508)
T KOG1840|consen  294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL  373 (508)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            999999999999999987532        2233556666666777777777777776665421        113345555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------RNFLEAW  554 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~  554 (781)
                      |.+|...|++++|.+.+++++.+.        +.....+..+|..+.+.+++.+|...|..++.+.       |+....+
T Consensus       374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~  453 (508)
T KOG1840|consen  374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY  453 (508)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence            555555555555555555555442        1112334445555555555555555555444331       1222333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          555 GHLTQFYQDLANSEKALECLQQVL  578 (781)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~~~~al  578 (781)
                      .+|+.+|..+|+++.|+++.++++
T Consensus       454 ~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  454 LNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHH
Confidence            444444444444444444444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=5.2e-12  Score=125.64  Aligned_cols=437  Identities=15%  Similarity=0.106  Sum_probs=320.9

Q ss_pred             HHHHHHH-HhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 003991           40 RIELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (781)
Q Consensus        40 r~~~~~~-~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  117 (781)
                      +++.++. -+++++++|...|.+|+.-+ .++++...-|.+-++.++-..|...+.+|+.+-|.--+.|+..-..-..+|
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            4555553 68899999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcc
Q 003991          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (781)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (781)
                      +.+.|...|++=.+..|++-+=+. .+.+.-.-...                                            
T Consensus       156 Ni~gaRqiferW~~w~P~eqaW~s-fI~fElRykei--------------------------------------------  190 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPDEQAWLS-FIKFELRYKEI--------------------------------------------  190 (677)
T ss_pred             ccHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHhhHH--------------------------------------------
Confidence            999999999999666666532211 11111000000                                            


Q ss_pred             cccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccC
Q 003991          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (781)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (781)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (677)
T KOG1915|consen  191 --------------------------------------------------------------------------------  190 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHH
Q 003991          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKE  357 (781)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (781)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (677)
T KOG1915|consen  191 --------------------------------------------------------------------------------  190 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHH
Q 003991          358 TSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAA  434 (781)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A  434 (781)
                            ....-...+..-.+ ..+..|+..|..-...|+..-|...|+.+++.-.++.   ..+...|..-..+..++.|
T Consensus       191 ------eraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa  263 (677)
T KOG1915|consen  191 ------ERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA  263 (677)
T ss_pred             ------HHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00000111111122 2466788888888889999999999999988654433   2344455555667788999


Q ss_pred             HHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991          435 ISDFTEAIQSNPSA--GEAWKRRGQARAALGES---VEAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (781)
Q Consensus       435 ~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (781)
                      ...|.-++..-|.+  ...+..+...-.+-|+.   ++++     -.|++.+..+|.+.++|+.+-.+....|+.+.-.+
T Consensus       264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire  343 (677)
T KOG1915|consen  264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE  343 (677)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence            99999999888877  33333333333344543   3333     24777888899999999998888888899999999


Q ss_pred             HHHHHHHhCCCCHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHH
Q 003991          505 DLSACVKLDKENKS-------AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       505 ~~~~a~~~~p~~~~-------~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A  570 (781)
                      .|++|+...|....       +|..+-.++   ....+.+.+.+.|+.++++-|..    ...|...|....++.+...|
T Consensus       344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A  423 (677)
T KOG1915|consen  344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA  423 (677)
T ss_pred             HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence            99999988775422       222222222   34678888999999999988854    67888888888899999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      .+.+-.++...|. ...+.....+-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|...|+-|+....
T Consensus       424 RkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~  502 (677)
T KOG1915|consen  424 RKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA  502 (677)
T ss_pred             HHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence            9999999999887 344555566677888999999999999999999999999999999999999999999999988765


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccH
Q 003991          651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK  694 (781)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  694 (781)
                      -+....+..+.+-+.     ...+.++.|...|.+.++..+-.+
T Consensus       503 ldmpellwkaYIdFE-----i~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  503 LDMPELLWKAYIDFE-----IEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             cccHHHHHHHhhhhh-----hhcchHHHHHHHHHHHHHhcccch
Confidence            444444444444443     245666777777776666555433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.69  E-value=8e-14  Score=147.99  Aligned_cols=311  Identities=12%  Similarity=-0.022  Sum_probs=233.7

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (781)
                      +|+.+..+..+|..+...|+...|...+.++.+..|.+   .+..+..|.++...|++++|...+++++..+|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            58889999999999999999999999999988877754   556788899999999999999999999999999987776


Q ss_pred             HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          454 RRGQARAALGES----VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       454 ~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      . +..+...|++    ..+...+.......|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            5 5555555544    4444444443356677777888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCC
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ  600 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~  600 (781)
                      .|++++|+.++.+++...|..+    ..+..+|.++...|++++|+..|++++...|.  ......   .+...+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            9999999999999999876432    35668999999999999999999999866652  221111   22222333443


Q ss_pred             HHHHHHH--H-HHhhccCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHHHHH
Q 003991          601 HKKAIKD--L-SSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQCLAFYQKEIALYTA  673 (781)
Q Consensus       601 ~~~A~~~--~-~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~  673 (781)
                      ...+..+  + .......|  .........+.++...|+.++|...++.+....-.  .............-.++.++..
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3222222  1 11111112  12233346888899999999999999888664422  1111223344556778888999


Q ss_pred             hchhhHHHHHhhhcC
Q 003991          674 SKINSEFCWFDIDGD  688 (781)
Q Consensus       674 ~~~~~A~~~~~~~~~  688 (781)
                      |++..|+..+..+..
T Consensus       321 g~~~~A~~~L~~al~  335 (355)
T cd05804         321 GNYATALELLGPVRD  335 (355)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999977765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.67  E-value=2.9e-13  Score=143.65  Aligned_cols=268  Identities=15%  Similarity=0.053  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCcHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAWKRRG  456 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la  456 (781)
                      .+..+..|..++..|++++|...++++++.+|.+..++.. +..+...|++..+.....+++    ...|....++..+|
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            3445567888999999999999999999999999987775 666655555444444444443    46677778888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGE  532 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~  532 (781)
                      .++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+    ..+..++.++...|+
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~  201 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD  201 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999999877443    346689999999999


Q ss_pred             HHHHHHHHHHHHhhCcc--cHHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHHCCCHH
Q 003991          533 YKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~g~~~  602 (781)
                      +++|+..+++++...|.  ......   .+...+...|....+..+  + .......+.  ........+.++...|+.+
T Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence            99999999999866652  222111   222233334433333322  1 111111121  2233346788889999999


Q ss_pred             HHHHHHHHhhccCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          603 KAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       603 ~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +|...++........         ........|.++...|++++|+..+..++.+.
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999887653322         24667788999999999999999999999765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.5e-11  Score=126.24  Aligned_cols=283  Identities=15%  Similarity=0.064  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------CC-CHHHHHHHHHHHHHcc
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED------------------------------PM-YPEALIGRGTARAFQR  429 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~-~~~~~~~la~~~~~~g  429 (781)
                      ...+...|..+++.|+|++|+.+|+.+++.+                              |. ..+.+|+.|.++...|
T Consensus       110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g  189 (652)
T KOG2376|consen  110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG  189 (652)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence            3345555666777777777777777664322                              22 4567899999999999


Q ss_pred             CHHHHHHHHHHHHHhCC-------Cc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Q 003991          430 ELEAAISDFTEAIQSNP-------SA--------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER-----  489 (781)
Q Consensus       430 ~~~~A~~~~~~al~~~p-------~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-----  489 (781)
                      +|.+|++.+++++.+..       .+        ..+...++.++..+|+..+|...|...+..+|.+.......     
T Consensus       190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv  269 (652)
T KOG2376|consen  190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV  269 (652)
T ss_pred             cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence            99999999999954311       11        23677889999999999999999999999887663221111     


Q ss_pred             --------------------------------------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          490 --------------------------------------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       490 --------------------------------------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                                                                  +.+.+..+.-+.+.+.....-...|....-......
T Consensus       270 a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~  349 (652)
T KOG2376|consen  270 ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEA  349 (652)
T ss_pred             hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHH
Confidence                                                        111111111111111111111111221111122223


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHH
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~  597 (781)
                      ...+...+.+|...+....+.+|.. ..+...++.+.+..|+++.|+..+......       ....|.+-..+-..+..
T Consensus       350 t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~  429 (652)
T KOG2376|consen  350 TKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYK  429 (652)
T ss_pred             HHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHh
Confidence            3333336788888888888888877 677888899999999999999999833311       12234444555556666


Q ss_pred             CCCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          598 LGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      .++-+.|...+..++..       .+..-..+...+..-.+.|+-++|...+++.++.+|++.++...+..+|
T Consensus       430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~  502 (652)
T KOG2376|consen  430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY  502 (652)
T ss_pred             ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            66666666666666543       2223345666777888889999999999999999999999876665444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=6.5e-15  Score=129.47  Aligned_cols=120  Identities=22%  Similarity=0.231  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch------hhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI  107 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~------~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  107 (781)
                      ..+-+.+..||++|.+|+|.+|..-|+.||+++|..      .+|+|||.|+++++.|+.||.+|.+||++.|+|.+|+.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            345566789999999999999999999999998432      34899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (781)
Q Consensus       108 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  153 (781)
                      |++.+|.++.++++|+.+|++.+++.|........+.++.|....-
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er  218 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER  218 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence            9999999999999999999999999999998888888888876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.60  E-value=2e-12  Score=138.51  Aligned_cols=305  Identities=16%  Similarity=0.099  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      .+.++.++.++...|++++|++++++....-.+....+-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            56788889999999999999999999888888888999999999999999999999999999999999999998888873


Q ss_pred             HcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991          461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (781)
Q Consensus       461 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  534 (781)
                      ...     +.+.-...|++.....|....+. .+...+..-..+.. +..++...+..  .-|.....+-.+|....+..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence            332     56777888998888888653332 22222222223433 33444444433  34555555655555433333


Q ss_pred             HHHHHHHHHHhh---------------Cccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       535 ~A~~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      -....+...+..               .|..  ..+++.+|..|-..|++++|+.+++++|...|..++.|...|.++..
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh  240 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            223333332211               1111  34568899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc-HHHHHHHHHHH-HHHHHHHHHHhc
Q 003991          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS-MEKFVLQCLAF-YQKEIALYTASK  675 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~-~~~~~~~~~~~~  675 (781)
                      .|++.+|.+.++.+-.+++.|-.+....+..+.+.|+.++|.+.+......+-+. .+.+-..+.+| ...|.++...|+
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998888899999999999999999998876655321 12222333333 355888888999


Q ss_pred             hhhHHHHHhhhcC
Q 003991          676 INSEFCWFDIDGD  688 (781)
Q Consensus       676 ~~~A~~~~~~~~~  688 (781)
                      +..|+..|.....
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.60  E-value=1.2e-13  Score=136.94  Aligned_cols=189  Identities=16%  Similarity=0.165  Sum_probs=158.1

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---  450 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---  450 (781)
                      .+..++.++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..++++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            456788999999999999999999999999999999876   57899999999999999999999999999998765   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          451 AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (781)
Q Consensus       451 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  522 (781)
                      +++.+|.++...        |++++|+..|++++..+|++...+..+..+....+    .             .......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence            788999999876        78999999999999999988666543332211110    0             0122357


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      +|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++.+....|
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8889999999999999999999987654   68999999999999999999999888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.60  E-value=1e-13  Score=137.44  Aligned_cols=190  Identities=16%  Similarity=0.059  Sum_probs=155.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---
Q 003991          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---  518 (781)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~---  518 (781)
                      ++..+..++.+|..+...|++++|+..+++++...|.++   .+++.+|.++...|++++|+..++++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            445678899999999999999999999999999999875   57899999999999999999999999999988765   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991          519 AYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (781)
Q Consensus       519 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (781)
                      +++.+|.++...        |++++|+..+++++..+|++..++..+..+....+    .             .......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence            688889999876        78899999999999999988665533332211100    0             0123457


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      +|.++...|++.+|+..|++++...|+.   +.+++.+|.++..+|++++|..+++.+....|+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            8889999999999999999999997764   589999999999999999999999888776663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.60  E-value=4.3e-14  Score=126.70  Aligned_cols=126  Identities=14%  Similarity=0.045  Sum_probs=105.1

Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46778888888775   556788888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (781)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (781)
                      +++.+++++|.++..+|++++|+..|++++++.|+++..+.+++.+...
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888876666555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=1.3e-11  Score=121.21  Aligned_cols=299  Identities=14%  Similarity=0.042  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQAR  459 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~  459 (781)
                      +......|..-+..|+|.+|.....+.-+..+....++..-+.+..+.|+++.|-.++.++-+..++ ...+....+.+.
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            4455666788888999999999999988888887788888899999999999999999999998544 356778899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-H--HHHHHHH--HHHc---C
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-A--YTYLGLA--LSSI---G  531 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~--~~~la~~--~~~~---g  531 (781)
                      ...|++..|.....++++..|.++.+......+|...|+|.....++.+.-+..--+.. .  +-..+..  +.+.   +
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999988877654322211 1  1111111  1111   1


Q ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (781)
                      ..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+. .....++  ...-+++..=++..++.
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence            11111223333222223445666666666667777777777777766554332 2221111  23456666666666666


Q ss_pred             hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991          612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (781)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  683 (781)
                      ++..|++|..+..+|.++.+.+.|.+|..+|+.+++..|+. ..+..++.++-..|..........+++..+
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777776666643 345566666666666666666666665443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.57  E-value=1.5e-14  Score=137.64  Aligned_cols=112  Identities=19%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHH
Q 003991           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI  107 (781)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~-~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  107 (781)
                      .++++....+.+.+||++|.+|.|++||+||+++|..+| ||..+.|||.+|++++.+..|..+|+.|+.+|-.|.+||.
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            455666666679999999999999999999999999995 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 003991          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADL  140 (781)
Q Consensus       108 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  140 (781)
                      |+|.+-..+|+..+|.++++++|++.|+.-+--
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence            999999999999999999999999999964433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.56  E-value=8.1e-14  Score=124.88  Aligned_cols=127  Identities=15%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34566666666653   445677777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      +++.+++.+|.++...|++++|+..|++++...|+++..+..+|.+...+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777776666665443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.1e-10  Score=119.85  Aligned_cols=265  Identities=14%  Similarity=0.127  Sum_probs=179.9

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPM-------YPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      .+-+.+|+.|..+...|+|.+|++.+++++++        +.+       -..+...++.++..+|+.++|...|...++
T Consensus       173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK  252 (652)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            35678899999999999999999999999542        111       123567889999999999999999999998


Q ss_pred             hCCCcHHH-------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHH
Q 003991          444 SNPSAGEA-------------------------------------------------WKRRGQARAALGESVEAIQDLSK  474 (781)
Q Consensus       444 ~~p~~~~~-------------------------------------------------~~~la~~~~~~g~~~~A~~~~~~  474 (781)
                      .+|.+...                                                 +.+.+.+.+..+.-+.+.+....
T Consensus       253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~  332 (652)
T KOG2376|consen  253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS  332 (652)
T ss_pred             hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            87765321                                                 11112222222222222222222


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q 003991          475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------  546 (781)
Q Consensus       475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  546 (781)
                      .-...|....-.............+..|..++......+|.. ..+...++.+.+.+|+++.|++.+...+..       
T Consensus       333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~  412 (652)
T KOG2376|consen  333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE  412 (652)
T ss_pred             CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence            212222222112222333333347889999999999999988 677888999999999999999999843321       


Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (781)
                      ....+.+...+-..++..++.+.|...+..++.-       .+.....+...+..-.+.|+-++|...+++.++.+|++.
T Consensus       413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~  492 (652)
T KOG2376|consen  413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT  492 (652)
T ss_pred             hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence            1122445555556677777766676666666643       222334556667777888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      .++..+...|... +.+.|..+-++
T Consensus       493 ~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  493 DLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            9999999888776 56777665443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=8.1e-13  Score=147.34  Aligned_cols=281  Identities=14%  Similarity=-0.019  Sum_probs=199.1

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      ....+..-.|.+..++..++..+...+++++|+..++..++..|+....++.+|.++.+.+++.++...  .++...+.+
T Consensus        19 ~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~   96 (906)
T PRK14720         19 TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN   96 (906)
T ss_pred             hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence            444556678899999999999999999999999999999999999999999999999999987776655  444443333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                                    .++ .+++++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|.
T Consensus        97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a  161 (906)
T PRK14720         97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE  161 (906)
T ss_pred             --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence                          234 44455555555566666677777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--------------------H
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------Y  588 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~  588 (781)
                      .. +.++|+.++.+|+..              +...+++.++..++.+.+..+|++.+.                    +
T Consensus       162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~  226 (906)
T PRK14720        162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL  226 (906)
T ss_pred             Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence            77 777777777777654              444556677777777777666665443                    2


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI  668 (781)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  668 (781)
                      .-+=..|...++|++++.+++.+++.+|.|..+...++.||.  +.|.. ...|+..+++..=.                
T Consensus       227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~----------------  287 (906)
T PRK14720        227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG----------------  287 (906)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc----------------
Confidence            223356667778888888888888888888888888888886  44444 55555555542100                


Q ss_pred             HHHHHhchhhHHHHHhhhcCCCcccHHHHHHhcC
Q 003991          669 ALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLH  702 (781)
Q Consensus       669 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  702 (781)
                        .....+..++..|++-..+++|.--+.+.|+.
T Consensus       288 --~~~~~~~~~i~~fek~i~f~~G~yv~H~~WGv  319 (906)
T PRK14720        288 --NNRKPVKDCIADFEKNIVFDTGNFVYHRTWGV  319 (906)
T ss_pred             --cCCccHHHHHHHHHHHeeecCCCEEEEcCCCC
Confidence              00123556777888888888887665444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.54  E-value=1.1e-13  Score=134.81  Aligned_cols=263  Identities=19%  Similarity=0.201  Sum_probs=208.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHHHHHHH
Q 003991          386 SRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGEAWKRR  455 (781)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l  455 (781)
                      .-|..+++.|++...+.+|+.+++...++.    .+|..+|.+|+.+++|++|+++-..-+.+      .-..+..--++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            447889999999999999999999877654    46789999999999999999986543322      12234456689


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC  509 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a  509 (781)
                      |.++...|.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888766432      25689999999987664                    34455555555


Q ss_pred             HHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          510 VKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV  577 (781)
Q Consensus       510 ~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (781)
                      +++...      ...++-++|..|+-+|+|+.|+..-+.-+.+....      ..++.++|+++.-.|+++.|+++|++.
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            544322      23567788999999999999999988877765443      468899999999999999999999987


Q ss_pred             HhhC----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          578 LYID----K--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       578 l~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                      +.+.    .  ..+...+.+|..|.-..++++|+.++.+-+.+..      ....+++.+|..+..+|..++|+.+.++.
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            6542    2  2355688999999999999999999998776632      23578999999999999999999998888


Q ss_pred             Hhh
Q 003991          646 LDL  648 (781)
Q Consensus       646 l~~  648 (781)
                      +++
T Consensus       342 l~~  344 (639)
T KOG1130|consen  342 LRS  344 (639)
T ss_pred             HHH
Confidence            765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=5.1e-12  Score=116.21  Aligned_cols=184  Identities=17%  Similarity=0.056  Sum_probs=144.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                      ++...++-....+....|+.+.|..++++.....|.+..+....|..+...|.+++|+++|+..++-+|.+..++...-.
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            33344555566666777888888888888777778888888888888888888888888888888888888777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---CHH
Q 003991          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---EYR  636 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~  636 (781)
                      +...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+|   ++.
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            77778888888888888888888888888888888888888888888888888888888888888888887766   566


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          637 EAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       637 ~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      -|.++|.++++++|.+..+++...+.-
T Consensus       209 ~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            788888888888887777665544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.52  E-value=1.4e-10  Score=124.46  Aligned_cols=255  Identities=17%  Similarity=0.115  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ..+++.+|..+-..|++++|+.+++++|+..|..++.+...|.++...|++.+|...++.+..+++.+--+-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH-H-
Q 003991          461 ALGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTY-L-  523 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~-l-  523 (781)
                      +.|+.++|...+......+.  ..       .......|.+|.+.|++..|++.|..+.+...+.      ...|.. . 
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~  353 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM  353 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence            99999999999887765542  11       2234567899999999999999999887763221      111111 0 


Q ss_pred             -HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-------------------------------------
Q 003991          524 -GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-------------------------------------  565 (781)
Q Consensus       524 -a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-------------------------------------  565 (781)
                       -+.|..+=+++.       -+...|....+......+|+...                                     
T Consensus       354 t~r~Y~~~L~~ed-------~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~  426 (517)
T PF12569_consen  354 TLRAYVDMLRWED-------KLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA  426 (517)
T ss_pred             cHHHHHHHHHHHH-------HhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence             011111111110       01111111112122222222110                                     


Q ss_pred             CHHHHHHHHHH-H----------Hh--hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          566 NSEKALECLQQ-V----------LY--IDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       566 ~~~~A~~~~~~-a----------l~--~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      .-+++...-.+ .          -.  ..+.+++   -.|.-+.... =.++|.+.++..+...|++.+.|..--.+|.+
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~R  503 (517)
T PF12569_consen  427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLR  503 (517)
T ss_pred             hHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHh
Confidence            01111100000 0          00  0011111   1233344444 36889999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHH
Q 003991          632 IGEYREAIKDYDAA  645 (781)
Q Consensus       632 ~g~~~~A~~~~~~a  645 (781)
                      .|++-.|++.+.+|
T Consensus       504 k~K~LLaLqaL~kA  517 (517)
T PF12569_consen  504 KGKYLLALQALKKA  517 (517)
T ss_pred             cCcHHHHHHHHHhC
Confidence            99999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=5.1e-12  Score=116.22  Aligned_cols=187  Identities=18%  Similarity=0.156  Sum_probs=147.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                      ++...++-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...--
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            34444555566666777888888888888877778888888888888888888888888888888888888877777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHH
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHK  602 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~  602 (781)
                      +...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-+|   ++.
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            77778888888888888888888888888888888888888888888888888888888888888888877665   567


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      .|.++|.++++++|.+..+++.+-.|....
T Consensus       209 ~arkyy~~alkl~~~~~ral~GI~lc~~~l  238 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNLRALFGIYLCGSAL  238 (289)
T ss_pred             HHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence            788888888888887777777665554433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=3.8e-10  Score=112.64  Aligned_cols=333  Identities=14%  Similarity=0.147  Sum_probs=273.7

Q ss_pred             HhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (781)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (781)
                      ...+...+...+..+..+...|...|..-..++++..|..+|++++..+..+...|...+.+-+.......|...+.+++
T Consensus        55 q~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv  134 (677)
T KOG1915|consen   55 QLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV  134 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence            33344455555666677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (781)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  522 (781)
                      .+-|.-...|+....+-..+|+...|.+.|++-+...| +..+|......-.+.+.++.|...|++.+-..|+ ...|..
T Consensus       135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wik  212 (677)
T KOG1915|consen  135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIK  212 (677)
T ss_pred             HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHH
Confidence            99999999999999999999999999999999999999 5678888888889999999999999999988874 677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHG  597 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~  597 (781)
                      .+..-...|+...|...|..|++...++   ...+...|..-..++.++.|..+|+-++..-|.+  ...+..+...-.+
T Consensus       213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq  292 (677)
T KOG1915|consen  213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ  292 (677)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999876554   3455566777778899999999999999998876  4444444444455


Q ss_pred             CCCH---HHHHH-----HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 003991          598 LGQH---KKAIK-----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA  669 (781)
Q Consensus       598 ~g~~---~~A~~-----~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (781)
                      -|+.   ++++.     .|+..+..+|.|.++|+.+-.+....|+.+.-.+.|++|+..-|-..+-.+..-.+|.-.--+
T Consensus       293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa  372 (677)
T KOG1915|consen  293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA  372 (677)
T ss_pred             hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence            5553   33332     477788899999999999999999999999999999999998886655555555555544444


Q ss_pred             HHH---HhchhhHHHHHhhhcCCCc----ccHHHH
Q 003991          670 LYT---ASKINSEFCWFDIDGDIDP----LFKEYW  697 (781)
Q Consensus       670 ~~~---~~~~~~A~~~~~~~~~~~p----~~~~~~  697 (781)
                      +|.   ..+.+.+...|+.++++=|    .|+..|
T Consensus       373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiW  407 (677)
T KOG1915|consen  373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIW  407 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHH
Confidence            433   5566777778877777766    355555

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=1.4e-12  Score=123.43  Aligned_cols=125  Identities=21%  Similarity=0.268  Sum_probs=109.6

Q ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK  606 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~  606 (781)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567788888899999999999999999999999999999999999999999999999999999874 67677  589999


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .++++++.+|+++.+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999998877654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.49  E-value=5.1e-12  Score=117.80  Aligned_cols=165  Identities=21%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      ....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....|+++.+|
T Consensus        59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~  137 (257)
T COG5010          59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW  137 (257)
T ss_pred             HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence            33334444444 44444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (781)
                      ..+|.+|.+.|++++|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+....|+
T Consensus       138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~  217 (257)
T COG5010         138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD  217 (257)
T ss_pred             hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence            44444444444444444444444444444444444444444444444444444444444434344444444444444444


Q ss_pred             HHHHHH
Q 003991          601 HKKAIK  606 (781)
Q Consensus       601 ~~~A~~  606 (781)
                      +.+|..
T Consensus       218 ~~~A~~  223 (257)
T COG5010         218 FREAED  223 (257)
T ss_pred             hHHHHh
Confidence            444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.49  E-value=5.8e-12  Score=117.44  Aligned_cols=182  Identities=18%  Similarity=0.113  Sum_probs=170.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (781)
                      +...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..++++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4444777777788889999999 999999999999999999999999999999999988999999999999999999999


Q ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHH
Q 003991          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (781)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (781)
                      ....|++..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+..+..
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~  206 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ  206 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Q 003991          624 LRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      +++.+....|++.+|.....+-+
T Consensus       207 NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         207 NLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHhhcCChHHHHhhccccc
Confidence            99999999999999998766544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=8.2e-13  Score=130.82  Aligned_cols=123  Identities=21%  Similarity=0.269  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----------------cchhhhhhHHHHHHhhhCHHHHHHHHHH
Q 003991           31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS----------------YEIQDICNRAFCYSQLELHKHVIRDCDK   94 (781)
Q Consensus        31 ~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~----------------~~~~~~~~rA~~~~~~~~~~~A~~~~~~   94 (781)
                      +..+.+...|.++|.+|+.|+|..|+..|++|+..-                .-..++.|.|.|++++++|.+|+..|++
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            467788899999999999999999999999988642                1123488999999999999999999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991           95 ALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (781)
Q Consensus        95 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  153 (781)
                      +|.++|++++|+||+|.+++.+|+++.|+..|++++++.|++..+..++..+.......
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888887766644

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=5e-11  Score=114.47  Aligned_cols=290  Identities=14%  Similarity=0.098  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      ..-.|.+++..|+|++|+..|.-+...+.-+.+.+.++|.+++.+|.|.+|.....++    |+++-....+-.+-.+.+
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            3344555555555555555555555544444555555555555555555555444332    333333333333333344


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (781)
                      +-++-.. |...+.-   ..+-...++.+.+..-.|++|++.|++++.-+|+.......+|.+|.++.-++-+.+.+.-.
T Consensus       136 dEk~~~~-fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY  211 (557)
T KOG3785|consen  136 DEKRILT-FHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY  211 (557)
T ss_pred             cHHHHHH-HHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence            4333222 2222211   12333445555555566666666666666666666666666666666666666666666666


Q ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      +...|+++.+....+..+++.=+-..|..-....... +...+..-...-.-+.--.+-+.|++++-..++.   -|++.
T Consensus       212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEAR  288 (557)
T KOG3785|consen  212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEAR  288 (557)
T ss_pred             HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhh
Confidence            6666666666666665555543333333333332211 1111111110000000011223333333333322   24667


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      .++...|..+++.++|+...+   +++|..|..+...+.++...|.......++.-|...|...|
T Consensus       289 lNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG  350 (557)
T KOG3785|consen  289 LNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG  350 (557)
T ss_pred             hhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence            777777777777777766544   46777777776666666666555555555555555554443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.47  E-value=5.3e-13  Score=130.23  Aligned_cols=267  Identities=17%  Similarity=0.172  Sum_probs=205.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 003991          420 GRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE------PNSADILHER  489 (781)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l  489 (781)
                      .-|.-+++.|++...+.+|+.+++...++    ..+|..+|..|..+++|++|+++-..-+.+.      -..+...-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            34677889999999999999999987766    3478889999999999999998755433321      1224566789


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGE--------------------YKKAEEAHLKA  543 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a  543 (781)
                      |.++-..|.|++|+.+..+-+.+..      ....+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888765532      235789999999998775                    34455555555


Q ss_pred             HhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991          544 IQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       544 l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (781)
                      +++....      ..++-++|+.|+-+|+|+.|+..-+.-+.+....      -.++.++|.++.-+|+++.|+++|++.
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            5443322      3567789999999999999999988877664432      357889999999999999999999987


Q ss_pred             hccC----CC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991          612 LGID----PS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (781)
Q Consensus       612 l~~~----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  685 (781)
                      +.+.    ..  .+...+.+|..|.-..++++|+.++.+-+.+..+ ..-..-.+.+++.+|.++...+..++|+.+..+
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-L~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-LEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            6542    22  3467789999999999999999999998887643 223445566888888888888988888776655


Q ss_pred             hc
Q 003991          686 DG  687 (781)
Q Consensus       686 ~~  687 (781)
                      ..
T Consensus       341 hl  342 (639)
T KOG1130|consen  341 HL  342 (639)
T ss_pred             HH
Confidence            43

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.47  E-value=7.3e-12  Score=118.59  Aligned_cols=120  Identities=19%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHHH
Q 003991          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVED  505 (781)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~  505 (781)
                      ++.++++..+++++..+|++...|..+|.++...|++++|+..|++++.+.|+++.++..+|.++ ...|+  +++|...
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~  132 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM  132 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444432 33333  2444444


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Q 003991          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (781)
Q Consensus       506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (781)
                      ++++++.+|+++.++..+|..+...|++++|+.+++++++..|
T Consensus       133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4444444444444444444444444444444444444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=1.3e-11  Score=137.32  Aligned_cols=156  Identities=15%  Similarity=0.003  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       501 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      +++.-+.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            33334444445578888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      +|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            9999999999999999999999999999999988888889999999999999999999999999998877665544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.44  E-value=5.1e-12  Score=132.76  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=196.0

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (781)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (781)
                      ........++..+...|-...|+..|++.        ..|.....||...|+..+|.....+-++ .|.++..|..+|.+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence            34456678899999999999999999885        4566788899999999999999999888 67788888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 003991          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (781)
Q Consensus       493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (781)
                      .....-|++|.++.+..      +..+...+|......++|.++.+.++..++++|-....|+.+|.+..+.+++..|.+
T Consensus       467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence            87777777777776653      344667778778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      +|..++.++|++..+|.+++.+|.+.++-.+|...+.++++.+-++..+|.+.-.+....|.+++|++.|.+.+.+..+
T Consensus       541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999888999999999999999999999999999887543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.43  E-value=2.1e-11  Score=136.22  Aligned_cols=223  Identities=16%  Similarity=0.065  Sum_probs=189.7

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991          410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER  489 (781)
Q Consensus       410 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  489 (781)
                      .+|.+..++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++...  .++..           
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----------   92 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----------   92 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence            47889999999999999999999999999999999999999999999999999986666544  34333           


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  569 (781)
                         .....++ .+++++...+...+.+..+++.+|.+|..+|+.++|...|+++++.+|+++.++.++|..|... +.++
T Consensus        93 ---~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         93 ---FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             ---cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence               3344455 5666666677778888889999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH--------------------HHHHHHH
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL--------------------YLRASCY  629 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------------------~~la~~~  629 (781)
                      |+.++.+++..              +...++|..+.+++.+.+..+|++.+.+                    .-+-.+|
T Consensus       168 A~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        168 AITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY  233 (906)
T ss_pred             HHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            99999999876              6667789999999999999888875442                    2233788


Q ss_pred             HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                      ...++|++++..++.+++.+|++..+...++.+|-
T Consensus       234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            88999999999999999999999886665555544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=7.9e-12  Score=131.37  Aligned_cols=223  Identities=17%  Similarity=0.145  Sum_probs=200.6

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .|........+|..++..|-...|+.+|++.        ..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            5667778889999999999999999999985        5677789999999999999999999998 677778888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      .+.....-|++|.++.+..      +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus       465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            7776666666666665543      3457778888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      .+.|..++...|++..+|.+++..|...++-.+|...+.++++.+-.+..+|.+...+....|.+++|++.|.+.+.+
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999899999999999999999999999999999876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.41  E-value=2.9e-12  Score=128.25  Aligned_cols=258  Identities=13%  Similarity=0.051  Sum_probs=196.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      .+.++..|+|..++..++ ....++. .......+.+++..+|+++..+.-...   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            455788999999998777 2233332 345678899999999998876654433   12333445566666665555667


Q ss_pred             HHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (781)
Q Consensus       467 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (781)
                      .++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77776665543322  23556677788899999999999988764     567888888999999999999999999999


Q ss_pred             hhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      +.+.+..-.....+++.+..|  .+.+|...|+......+..+..+..++.++..+|+|++|...+.+++..+|+++.++
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            888877666666666666666  589999999999888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHHhhccCcHH
Q 003991          623 YLRASCYHAIGEY-REAIKDYDAALDLELDSME  654 (781)
Q Consensus       623 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~  654 (781)
                      .+++.+...+|+. +.+.+++.+....+|+++-
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            9999999999998 6677889998889999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.39  E-value=9.5e-12  Score=111.38  Aligned_cols=117  Identities=21%  Similarity=0.213  Sum_probs=101.2

Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      +.+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ++..++.+|.++...|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            8888888888888888888888888888888888765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.39  E-value=7.9e-11  Score=131.20  Aligned_cols=149  Identities=11%  Similarity=-0.002  Sum_probs=124.6

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      .....|.+.+++..+|.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..++
T Consensus        78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~  157 (694)
T PRK15179         78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI  157 (694)
T ss_pred             HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence            34457778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (781)
                      +.+|.++...|++++|+..|++++..+|++..++..+|.++...|+.++|...|++++....+-...+.
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence            888888888888888888888888888888888888888888888888888888888877665444433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.39  E-value=2e-09  Score=106.18  Aligned_cols=258  Identities=12%  Similarity=0.031  Sum_probs=196.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK  497 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~  497 (781)
                      ..-|..-+..|+|.+|.....+.-+..+...-.+..-+..-...|+++.+-.++.++-+..+++ ..+....+.+....|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            4445566678999999999999888887777788888889999999999999999999995544 567888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHH--HHHcCC---HHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQF--YQDLAN---SEK  569 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~--~~~~g~---~~~  569 (781)
                      ++..|..-..++.+..|.++.+......+|...|++.+...++.+.-+..--+   ..-+-+.+..  +.+..+   .+.
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            99999999999999999999999999999999999999999988876643222   1112222211  112222   222


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      -..+++..-..-.+++.....++.-+...|++++|.+....+++..-+ +.....++  ...-+++..=++..++.++..
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence            223444443334466888888999999999999999999999987655 33222222  235688999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991          650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (781)
Q Consensus       650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  686 (781)
                      |+++.       .++..|..++..+.|.+|-.+|+.+
T Consensus       325 ~~~p~-------L~~tLG~L~~k~~~w~kA~~~leaA  354 (400)
T COG3071         325 PEDPL-------LLSTLGRLALKNKLWGKASEALEAA  354 (400)
T ss_pred             CCChh-------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99997       5555666666777788887777665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.37  E-value=8.3e-10  Score=132.58  Aligned_cols=310  Identities=13%  Similarity=0.011  Sum_probs=233.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---  448 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  448 (781)
                      +......+..++..|++++|...+..+....+.         .......+|.++...|++++|..++++++...+..   
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            445677788889999999999999988764321         12345567888899999999999999999854442   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 003991          449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----  515 (781)
Q Consensus       449 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----  515 (781)
                        ..+...+|.++...|++++|...+.+++......      ..++..+|.++...|++++|...+.+++.....     
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence              2356778889999999999999999998764321      345677899999999999999999998876221     


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 003991          516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (781)
Q Consensus       516 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  584 (781)
                         ....+..+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+..   
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence               1234567888999999999999999998875321     25566778999999999999999999987653321   


Q ss_pred             HHHHH----HHHHHHHHCCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          585 SKAYH----LRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       585 ~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      .....    .....+...|+.+.|...+.......+...    ..+..++.++...|++++|...+++++........ .
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~-~  727 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL-M  727 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc-h
Confidence            11111    122445568999999999887765433322    22567999999999999999999999987533221 2


Q ss_pred             HHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      ...+.++...|..+...|+.++|...+.++.++..
T Consensus       728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            24455677788899999999999999998877543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.35  E-value=6.5e-09  Score=124.93  Aligned_cols=267  Identities=17%  Similarity=0.060  Sum_probs=203.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 003991          386 SRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR  454 (781)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  454 (781)
                      .+|..+...|++++|...+++++...+...     .+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            356777889999999999999988544422     355778889999999999999999998753321      235677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 003991          455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT  521 (781)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~  521 (781)
                      +|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.....     ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            899999999999999999998876321        1234567888999999999999999998876322     244566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 003991          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL  590 (781)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~  590 (781)
                      .++.++...|++++|...+.++....+..   .....    .....+...|+.+.|...+.......+...    ..+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            78999999999999999999987753322   11111    122445568999999999877654332222    12467


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          591 RGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      ++.++...|++++|...+++++....      ....++..+|.++...|+.++|...+.+++++....
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            89999999999999999999987522      234578889999999999999999999999987554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.35  E-value=1.5e-11  Score=128.15  Aligned_cols=114  Identities=23%  Similarity=0.252  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 003991           38 TARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (781)
Q Consensus        38 ~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  116 (781)
                      ..+..++.+|..|+|++|+.+|+++|.++ .++.+++++|.+++++|++++|+.++++||.++|+++.+|+++|.++..+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999 67888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003991          117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (781)
Q Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  151 (781)
                      |++++|+..|++++.+.|+.+.....+..+.....
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999988777666655553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=3.2e-11  Score=107.94  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (781)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (781)
                      .|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (781)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~  518 (781)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            555555555555555555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=2.3e-11  Score=115.61  Aligned_cols=120  Identities=25%  Similarity=0.343  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ++.+-..|.-++..++|.+|+..|.++|+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44556678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (781)
                      .+|++++|++.|+++++++|++...+.+|..+-...+...
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999887777766655555443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=3.8e-12  Score=115.72  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchh-hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 003991           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (781)
Q Consensus        32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~-~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg  110 (781)
                      +++.+...+..++++|....|..||.+|+++|.++|++. ++-|||.|++++++|+.+..+|++|++++|+.+++++.+|
T Consensus         6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen    6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            456778888999999999999999999999999997764 5679999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991          111 CAFSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                      .+.+....+++|+..+.+|..+...++
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            999999999999999999977654443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=7.6e-10  Score=104.06  Aligned_cols=153  Identities=21%  Similarity=0.174  Sum_probs=78.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  471 (781)
                      .+..+|..|++++..-.+..|.+-..+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555445555555555555555544


Q ss_pred             HHHHHHh------------------------------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          472 LSKALEF------------------------------EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (781)
Q Consensus       472 ~~~al~~------------------------------~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  519 (781)
                      .......                              -|  ++.+...+.|.+.++.|+++.|++-|+.+++...-++-.
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence            4333221                              12  234445555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAI  544 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al  544 (781)
                      -++++.++++.|++..|+++..+.+
T Consensus       181 AYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  181 AYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5555555555555555555544444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.30  E-value=9.1e-11  Score=102.39  Aligned_cols=111  Identities=15%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Q 003991          543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (781)
Q Consensus       543 al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (781)
                      ...+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34456 67788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      ++++|.|++..|+.+.|.+.|+.++....+.+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            99999999999999999999999998874443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.28  E-value=1.6e-10  Score=100.96  Aligned_cols=112  Identities=14%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             HHHHhhccC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 003991          369 CVTRISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (781)
Q Consensus       369 ~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (781)
                      .+..+.... +...+..+..|..++..|++++|...|+-+...+|.+...|+++|.++..+|++.+|+..|.+++.++|+
T Consensus        22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d  101 (157)
T PRK15363         22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID  101 (157)
T ss_pred             cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            344455556 7778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP  480 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  480 (781)
                      ++..+++.|.|++..|+.+.|.+.|+.++....
T Consensus       102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        102 APQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.27  E-value=1.9e-09  Score=109.29  Aligned_cols=154  Identities=21%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (781)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (781)
                      |....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+.++.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Q 003991          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (781)
Q Consensus       492 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  571 (781)
                      .++..|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+                 +..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence            8888888888888888888888888888888888888888877766554                 34455578888888


Q ss_pred             HHHHHHHhhCC
Q 003991          572 ECLQQVLYIDK  582 (781)
Q Consensus       572 ~~~~~al~~~~  582 (781)
                      ..+..+.+...
T Consensus       446 ~~l~~A~~~~~  456 (484)
T COG4783         446 IFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHHhcc
Confidence            88888776653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.26  E-value=2.5e-07  Score=96.42  Aligned_cols=221  Identities=15%  Similarity=0.183  Sum_probs=161.4

Q ss_pred             ccCHHHHHHHHHHHHH-hCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcC
Q 003991          428 QRELEAAISDFTEAIQ-SNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK  497 (781)
Q Consensus       428 ~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~  497 (781)
                      .|+..+-+..|..|+. .+|..     ...|..+|..|...|+.+.|...|+++.+..-..    ..+|...|..-....
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            5667777777777765 34432     4578888888888999999999998888764332    567888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                      +++.|+.+.+++...-..                  +..+|..++......|-++.....|++.+.+.--.|....+.|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            888888888887654211                  13456667777778888888888888888888778888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH---HHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHh
Q 003991          560 FYQDLANSEKALECLQQVLYIDK--RFSKAYHLR---GLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAI  632 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~  632 (781)
                      .+....-++++.+.|++.+.+.+  .-.+.|...   ...-+.-...+.|...|++|++..|..  -.++...|..-..-
T Consensus       520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            88888888899999988887754  334444432   222333456888899999999887742  23556667777777


Q ss_pred             CCHHHHHHHHHHHHhh
Q 003991          633 GEYREAIKDYDAALDL  648 (781)
Q Consensus       633 g~~~~A~~~~~~al~~  648 (781)
                      |--..|+..|++|-.-
T Consensus       600 GLar~amsiyerat~~  615 (835)
T KOG2047|consen  600 GLARHAMSIYERATSA  615 (835)
T ss_pred             hHHHHHHHHHHHHHhc
Confidence            8888888888877654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.24  E-value=8.6e-11  Score=117.75  Aligned_cols=257  Identities=15%  Similarity=0.078  Sum_probs=182.9

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991          422 GTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (781)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (781)
                      .+-++..|+|..++.-++ .....+. .......+.+++..+|+++..+.-...   ..+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence            345677899999997776 3333332 345677889999999998877655433   22333456667777776656777


Q ss_pred             HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          501 AAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (781)
Q Consensus       501 ~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (781)
                      .++..++..+....  .++......|.++...|++++|++.+.+.     .+.++......++...++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777666543322  34556667788888899999999988764     567888888999999999999999999998


Q ss_pred             hhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          579 YIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       579 ~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      +.+.+..-.....+++....|  ++.+|...|+......+.++..+..+|.+++.+|++++|...++++++.+|++++.+
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            888877766666777776665  699999999999988888999999999999999999999999999999999999955


Q ss_pred             HHHHHHHHHHHHHHHHHhch-hhHHHHHhhhcCCCcccH
Q 003991          657 VLQCLAFYQKEIALYTASKI-NSEFCWFDIDGDIDPLFK  694 (781)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~  694 (781)
                      .++..       +....|+- +.+..++.......|...
T Consensus       239 aNliv-------~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  239 ANLIV-------CSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHH-------HHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHH-------HHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            55444       33444544 223344444444455443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=9.6e-08  Score=99.43  Aligned_cols=192  Identities=15%  Similarity=0.177  Sum_probs=146.4

Q ss_pred             cCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcC
Q 003991          496 FKDFNAAVEDLSACVKL-DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLA  565 (781)
Q Consensus       496 ~~~~~~A~~~~~~a~~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g  565 (781)
                      .|+..+-+..|.+|++. +|..     ...|..+|..|...|+.+.|...|+++.+..-.    -..+|...|..-.+..
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            45566666677776653 4432     457888999999999999999999999886532    2678888898888999


Q ss_pred             CHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991          566 NSEKALECLQQVLYIDKR------------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (781)
Q Consensus       566 ~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (781)
                      +++.|.++++++......                  ...+|..++......|-++.....|++.+.+.--.|.+-.+.|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999888754211                  23457777888888888888888999998887778888888998


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          628 CYHAIGEYREAIKDYDAALDLE--LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      .+....-+++|.+.|++.+.+.  |.-.+.|.    .|..+....|.-...+.|...|.++++.-|
T Consensus       520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~----tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWN----TYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCccCCCccHHHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            8888888899999999988876  34444443    566666667777778888888888877554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=6.9e-09  Score=105.32  Aligned_cols=153  Identities=20%  Similarity=0.170  Sum_probs=108.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                      |....+++..+..++..|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++...|..+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            55666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (781)
                      .|++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|..                 ..+..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence            77777777777777777777777777777777777777776554443                 3445555667777777


Q ss_pred             HHHHHHHhhc
Q 003991          640 KDYDAALDLE  649 (781)
Q Consensus       640 ~~~~~al~~~  649 (781)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            7777776654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=4.1e-09  Score=99.21  Aligned_cols=276  Identities=13%  Similarity=0.043  Sum_probs=199.8

Q ss_pred             hHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Q 003991          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI--  442 (781)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--  442 (781)
                      ....++....+..|.+...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+.......  
T Consensus        28 DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~  107 (459)
T KOG4340|consen   28 DAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN  107 (459)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            334466667778888899999999999999999999999999999999988888888888888888888877654321  


Q ss_pred             ----------------------------HhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          443 ----------------------------QSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (781)
Q Consensus       443 ----------------------------~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (781)
                                                  +.-|  +..+...+.|.+.++.|+++.|++-|+.+++...-.+-+-++++.+
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa  187 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA  187 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence                                        1123  3456778889999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          493 NFKFKDFNAAVEDLSACVKL----DKEN-------------------------KSAYTYLGLALSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       493 ~~~~~~~~~A~~~~~~a~~~----~p~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (781)
                      +++.+++..|+++..+.++.    .|..                         ..++...+-++++.|+++.|.+.+...
T Consensus       188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm  267 (459)
T KOG4340|consen  188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM  267 (459)
T ss_pred             HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence            99999999999998887764    3331                         234555677788888888887666543


Q ss_pred             HhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--
Q 003991          544 IQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI--  619 (781)
Q Consensus       544 l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--  619 (781)
                      --...  -+|..+.+++..-. .+++.+...-+.-.+.++|--++.+-++-.+|.+..-|+.|..++..    +|+..  
T Consensus       268 PPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk  342 (459)
T KOG4340|consen  268 PPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYK  342 (459)
T ss_pred             CCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHH
Confidence            22111  13556666665433 45666777777777788887777888888888887777777765533    34321  


Q ss_pred             ---HHHHHHHHHHH-HhCCHHHHHHHHHHH
Q 003991          620 ---ECLYLRASCYH-AIGEYREAIKDYDAA  645 (781)
Q Consensus       620 ---~~~~~la~~~~-~~g~~~~A~~~~~~a  645 (781)
                         ...+.+-..+. ..-..++|.+-+...
T Consensus       343 ~L~~Yly~LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  343 FLTPYLYDLLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence               22233333332 234566666555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.17  E-value=1.2e-08  Score=99.87  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=78.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (781)
                      .++..++..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            467778888988999999999999999999888887654   4888889999999999999999999888876   4567


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC
Q 003991          453 KRRGQARAALGE------------------SVEAIQDLSKALEFEPNS  482 (781)
Q Consensus       453 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~  482 (781)
                      +.+|.++...+.                  ..+|+..|++.++..|++
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence            777776544331                  234555566666666654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.5e-10  Score=110.68  Aligned_cols=113  Identities=22%  Similarity=0.217  Sum_probs=98.3

Q ss_pred             hccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhh----hhhHHHHHHhhhCHHHHHHHHHHH
Q 003991           21 CEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQD----ICNRAFCYSQLELHKHVIRDCDKA   95 (781)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~----~~~rA~~~~~~~~~~~A~~~~~~a   95 (781)
                      -.|+-++...+-...|...|..||++|..++|..|+.+|+++|... +++..    |.|||+|.+-+|+|..|+.+|.+|
T Consensus        66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444454444555578899999999999999999999999999886 55443    999999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA  133 (781)
Q Consensus        96 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  133 (781)
                      +.++|++.++|+|=+.|++.+.++++|..+-+..+++.
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999999988886544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.14  E-value=1.1e-09  Score=114.07  Aligned_cols=113  Identities=22%  Similarity=0.284  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      +...|..++..|+|++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678888888999999999999999999888888888999988999999999999998888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (781)
                      ++++|+..|++++.++|++..+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888888877777665444

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.13  E-value=6.8e-11  Score=119.64  Aligned_cols=120  Identities=23%  Similarity=0.280  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      +.+...+..++.+|..++|+.|+..|++||+++|| ...+.+||.++++.+++..|+.|+.+||+++|.+.++|+++|.+
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a   81 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA   81 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence            35666778999999999999999999999999965 45578999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  153 (781)
                      .++++++.+|+..|++...+.|+.+.....+.+.+....+-
T Consensus        82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   82 VMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             HHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988888887766643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.11  E-value=1.3e-08  Score=97.41  Aligned_cols=172  Identities=20%  Similarity=0.220  Sum_probs=117.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (781)
                      .++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.+...|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            357889999999999999999999999999988764   5788999999999999999999999999999876   4578


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (781)
Q Consensus       453 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~  518 (781)
                      +.+|.++....           ...+|+..|+..+...|++..+-   ..+..+-              ..+      ..
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------------~~l------a~  142 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------------NRL------AE  142 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------------HHH------HH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------------HHH------HH
Confidence            88888876542           24577888888888888763321   1111110              000      11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHH
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A  570 (781)
                      --+.+|..|.+.|.+..|+..++.+++..|+.   ..++..++..|..+|..+.|
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            12346667777777777777777777776665   35566677777777776643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.10  E-value=6e-08  Score=94.02  Aligned_cols=302  Identities=14%  Similarity=0.141  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA  451 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~  451 (781)
                      +......|..++...++.+|+..+.+.+..-.+..   ..+-.+..+...+|.|++++.+--..+....+      ..++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778889999999999999999987654433   34445667888899999887776554443211      1357


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 003991          452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY  520 (781)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~  520 (781)
                      +.+++..+....++.+++.+-+..+.+....     ..+...++..+..++.++++++.|+.+++...++      -.++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            8889999999999999999998888765433     3567779999999999999999999999875443      2567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCC
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF  584 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~  584 (781)
                      ..+|..+....++++|..+..++.++....          ..+++.++..+..+|..-.|.++.+++.++.      +..
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            889999999999999999999998874322          3567788999999999999999999987653      223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhccCcH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELDSM  653 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~~  653 (781)
                      .....-+|.+|...|+.+.|..-|+.+...-..      ..+++...|.++....-..+     |+++-++++++...-.
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG  325 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIG  325 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh
Confidence            455677899999999999999999999865321      24566667777765544444     8888888887764322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991          654 EKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (781)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  683 (781)
                       .-+..-......+..|...|.-++-...+
T Consensus       326 -~K~~vlK~hcrla~iYrs~gl~d~~~~h~  354 (518)
T KOG1941|consen  326 -AKLSVLKLHCRLASIYRSKGLQDELRAHV  354 (518)
T ss_pred             -hhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence             22222223344444444444444333333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-09  Score=98.99  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------cc-cchhhhhhHHHHHHhhhCHHHHHHHH
Q 003991           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLA------------------QS-YEIQDICNRAFCYSQLELHKHVIRDC   92 (781)
Q Consensus        32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~------------------~~-~~~~~~~~rA~~~~~~~~~~~A~~~~   92 (781)
                      .+..-...|.+||.+|..|+|.+|+..|..||.                  ++ ...+++.|.+.|++..|+|-++++.|
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~  253 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC  253 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence            344456778999999999999999999999984                  23 33455889999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHH
Q 003991           93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL  144 (781)
Q Consensus        93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  144 (781)
                      ..+|..+|++.+|||++|.++...=+.++|..+|.++|++.|.-...+..-+
T Consensus       254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl  305 (329)
T KOG0545|consen  254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL  305 (329)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence            9999999999999999999999999999999999999998887766554333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.10  E-value=3.3e-10  Score=87.51  Aligned_cols=67  Identities=30%  Similarity=0.335  Sum_probs=62.3

Q ss_pred             chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 003991           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL  134 (781)
Q Consensus        68 ~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~  134 (781)
                      ++..+.++|.+++.+|+|++|+..|+++|+++|+++.+++.+|.++..+| ++++|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            56678999999999999999999999999999999999999999999999 79999999999977665

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=3.1e-10  Score=91.44  Aligned_cols=80  Identities=30%  Similarity=0.352  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHHHhccc---chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 003991           49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (781)
Q Consensus        49 ~g~~~~A~~~y~~ai~~~~---~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  125 (781)
                      +|+|++|+.+|.++++..|   ++..++++|.|++++|+|++|+..+++ ++.+|.++..++.+|.++.++|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999999999999996   455678899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHH
Q 003991          126 WEKG  129 (781)
Q Consensus       126 ~~~a  129 (781)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=3.2e-08  Score=96.87  Aligned_cols=181  Identities=15%  Similarity=0.053  Sum_probs=121.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYT  521 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~  521 (781)
                      .+..++..|..+...|++++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45667777777777788888888888887777776443   4677777777778888888887777777765   35666


Q ss_pred             HHHHHHHHcCC------------------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991          522 YLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (781)
Q Consensus       522 ~la~~~~~~g~------------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (781)
                      .+|.++...+.                  ..+|+..|++.++..|+...+              .+|...+..+-   ..
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~~  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---DR  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---HH
Confidence            67766544431                  235666666666666665221              11111111110   00


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                      ...--+..|..|.+.|.|..|+.-++.+++..|+.   .++++.++..|..+|..++|.......
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            01123456888889999999999999999888874   578889999999999999988766543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.06  E-value=1.8e-08  Score=96.40  Aligned_cols=174  Identities=23%  Similarity=0.174  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY  522 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~  522 (781)
                      ...++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.++..|+++   .+++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4566777777777777777777777777776654   55677777777777777777777777777777653   46666


Q ss_pred             HHHHHHHcCC-----------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003991          523 LGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR  591 (781)
Q Consensus       523 la~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  591 (781)
                      +|.++.....           ..+|+..|+..+...|++..+              .+|...+..+-.   .-..--+.+
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~i  147 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELYI  147 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHHH
Confidence            6666655421           224455555555555543211              111111111000   001123456


Q ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHH
Q 003991          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~  639 (781)
                      |..|.+.|.|..|+..++.+++..|+.+   +++..++.+|.++|..+.|.
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8888888999999999999988888864   57888888888888887544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.03  E-value=1.6e-06  Score=86.10  Aligned_cols=223  Identities=32%  Similarity=0.408  Sum_probs=149.1

Q ss_pred             cCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991          429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE  504 (781)
Q Consensus       429 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (781)
                      +.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4455555555555555444  244555556666666666666666666655  455555566666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       505 ~~~~a~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      .+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            666666655555444444444 66677777777777777766555   34455555556666777777777777777777


Q ss_pred             CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       581 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .+. ....+..++..+...+++..|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            777 57777778888888888888888888888877776677777777777667788888888888888876

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.01  E-value=1.7e-06  Score=85.99  Aligned_cols=224  Identities=29%  Similarity=0.351  Sum_probs=196.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 003991          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI  469 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  469 (781)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            57788888888888888776  378888999999999999999999999987  67888889999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999988877566666666 89999999999999999988776   3456667777778889999999999999999


Q ss_pred             hCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       546 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      ..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999 68999999999999999999999999999999987777888888888888899999999999999887

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=1.2e-08  Score=88.94  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR  454 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  454 (781)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+.+|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4566777777777778877887777777777665   4567777777777777777777777777776664   456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          455 RGQARAALGESVEAIQDLSKALEFEPNSADI  485 (781)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  485 (781)
                      +|.++...|++++|+.++.+++...|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7777777777777777777777777766544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=9.2e-09  Score=89.67  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYL  624 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  624 (781)
                      +..++.+|..+...|++++|+..|++++...|++   +.+++.+|.++...|++++|+..|++++...|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3567778888888888888888888888877765   4677888888888888888888888888877764   567888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          625 RASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +|.++..+|++++|..+++++++..|++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            888888888888888888888888888764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.97  E-value=2.7e-08  Score=107.92  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Q 003991          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~  602 (781)
                      ...|+.+|+++++.+|++..++..++.++...        .+...+....++++..  +|..+.++..+|......|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            45566666666666666666655555554332        2234556666666553  6777888999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                      +|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++..+....++++
T Consensus       438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~  498 (517)
T PRK10153        438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQ  498 (517)
T ss_pred             HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcccc
Confidence            999999999999994 8899999999999999999999999999999999875544444433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.96  E-value=2.3e-09  Score=82.75  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhcc
Q 003991          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL  650 (781)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  650 (781)
                      ++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46778888888888888888888888888888888888888888888888 68888888888888877

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.96  E-value=1.1e-07  Score=85.67  Aligned_cols=197  Identities=20%  Similarity=0.139  Sum_probs=122.8

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      ...+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|.+.|...++++|...-+..+.|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            34466778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      .++--|++.-|.+-+.+-.+.+|++|---..+-.. ...-++.+|..-+.+ +...+.+ ...|..   +-+.+|+..+ 
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~i---V~~yLgkiS~-  215 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNI---VEFYLGKISE-  215 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHH---HHHHHhhccH-
Confidence            88888888888888888888888776422111111 122345555544433 3222211 111111   1112222221 


Q ss_pred             HHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          537 EEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       537 ~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      ...++++.....++       .+.++.+|..+...|+.++|...|+-++..
T Consensus       216 e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         216 ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            12222322222222       345666666666666666666666666543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=9.7e-08  Score=86.05  Aligned_cols=197  Identities=17%  Similarity=0.154  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      +..++..|..|-..|-+.-|...|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|....+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            45677788888889999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      .-|++.-|.+-+.+-.+.+|++|---..+-. -...-++.+|...+.+-.+...+....|...+.   ..|+.. -...+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS-~e~l~  219 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKIS-EETLM  219 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhcc-HHHHH
Confidence            9999999999999999999988743222211 123345666665554433322222222222221   123221 11233


Q ss_pred             HHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          575 QQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       575 ~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      +++.....++       .++++.+|..+...|+.++|...|+-++..+-
T Consensus       220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            3333322222       45688888888888888888888888877543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.94  E-value=3.9e-08  Score=91.69  Aligned_cols=121  Identities=22%  Similarity=0.271  Sum_probs=90.2

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (781)
                      ..+..+..++.+|..+...|++++|+.+|+++++..|+.   ..++..+|.++...|++++|+.++.+++...|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            345567778888888888888888888888888776553   45778888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~  516 (781)
                      ..+|.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            8888888887777666655555432                    2566677777777766665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.94  E-value=3.4e-09  Score=80.59  Aligned_cols=65  Identities=26%  Similarity=0.281  Sum_probs=59.5

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus        73 ~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++++.|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36789999999999999999999999999999999999999999999999999999988888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=6.5e-07  Score=83.84  Aligned_cols=256  Identities=15%  Similarity=0.042  Sum_probs=189.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  467 (781)
                      .+.++..|+|..++..-++.-... ........+.+.|..+|++...+.-....-   .....+...++.....-++.+.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            455777899999888777654433 667788889999999998866544332221   1122344455555555555555


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          468 AIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       468 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      -+....+.+...  ..+......-|.++...+++++|++.....     .+.++...-..++.++.+++-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            555444443322  223345566678899999999999988763     3456666667888899999999999999988


Q ss_pred             hCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Q 003991          546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (781)
Q Consensus       546 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (781)
                      ++.+.  .+..||..+..    .+.+.+|.-+|+..-...|..+.....++.++..+|+|++|...++.++..+++++++
T Consensus       166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            86543  34445554443    3568899999999988788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHH-HHHHHHhhccCcHH
Q 003991          622 LYLRASCYHAIGEYREAIK-DYDAALDLELDSME  654 (781)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~  654 (781)
                      +.++-.+-...|...++.. .+.+.....|+++-
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            9999999999998877665 56677777888764

>PRK11906 transcriptional regulator; Provisional

Probab=98.94  E-value=6.7e-08  Score=99.02  Aligned_cols=161  Identities=12%  Similarity=0.086  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 003991          383 FRLSRGIAQVNEGK---YASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS  447 (781)
Q Consensus       383 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~  447 (781)
                      .++.+|...+..+.   ...|+.+|.+++   +.+|..+.++..++.|++..         .+..+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            44778887776664   467888999999   88999999999999988765         2355677888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-  526 (781)
                      ++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ 
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888765544433333 


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 003991          527 LSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~a  543 (781)
                      .+-....++|+..|-+-
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        417 MYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHcCCchhhhHHHHhhc
Confidence            34445667777776553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=3e-08  Score=95.62  Aligned_cols=122  Identities=23%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Q 003991          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLS  609 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~  609 (781)
                      .+..+.-++.-+..+|++.+.|..||.+|+..|++..|...|.+++++.|++++.+..+|.++....   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4556667777788888888889999999999999999999999999888888888888888876543   4577888899


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999999999988776543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=3.7e-08  Score=94.96  Aligned_cols=119  Identities=26%  Similarity=0.311  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSA  508 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~  508 (781)
                      +..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++...   ...++...+++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            334444444555555555555555555555555555555555555555555555555555544332   23455555555


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (781)
Q Consensus       509 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (781)
                      ++..+|.+..+...+|..++..|+|.+|...++..+...|.+
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            555555555555555555555555555555555555554433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.93  E-value=2.5e-08  Score=101.01  Aligned_cols=168  Identities=17%  Similarity=0.128  Sum_probs=108.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKR--F----SKAYH  589 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~--~----~~~~~  589 (781)
                      .+.++... ++++|+.++++++.+.-.      -...+..+|.+|... |++++|+++|++++.....  .    ...+.
T Consensus        81 Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~  159 (282)
T PF14938_consen   81 AANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL  159 (282)
T ss_dssp             HHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence            34444333 666666666666654221      145667788888887 8999999999998876321  1    34567


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                      .+|.++...|+|++|++.|++.....-++       ...++..+.|++..|++..|...+++....+|......-...+.
T Consensus       160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~  239 (282)
T PF14938_consen  160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE  239 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            88999999999999999999987643221       14566788899999999999999999999998654433222222


Q ss_pred             HHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          663 FYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       663 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      -.-.+..-.....+..++..|+....++|
T Consensus       240 ~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  240 DLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            22333333445567788888887777776

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.93  E-value=1.3e-08  Score=84.42  Aligned_cols=99  Identities=29%  Similarity=0.489  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777777777788888787777777777777777788887778888888888888877777777778888888888


Q ss_pred             CCHHHHHHHHHHHHhhccC
Q 003991          633 GEYREAIKDYDAALDLELD  651 (781)
Q Consensus       633 g~~~~A~~~~~~al~~~p~  651 (781)
                      |++++|...+.++++..|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            8888888888887777663

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.92  E-value=8.1e-07  Score=100.40  Aligned_cols=216  Identities=13%  Similarity=0.053  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQDLS  473 (781)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~  473 (781)
                      +..+-|++.+..+|+....|...-..+.+.++.++|.+.+++|+.. ++..    ..+|..+-.+...-|.-+.-.+.|+
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            4456677788888888888888888888888888888888888863 3332    2345444444555566677777888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cH
Q 003991          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FL  551 (781)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~  551 (781)
                      +|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|++.-|.  +.
T Consensus      1522 RAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            8877653 34577778888888888888888888888888777888888888888888888888888888888887  67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      ......|.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            7777888888888888888888888888888888888888888888888888888888887653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.92  E-value=1.1e-09  Score=105.00  Aligned_cols=226  Identities=18%  Similarity=0.106  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      +-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.|.+|++...|..|...+..++.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHcCCHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---------LGLALSSIGEYK  534 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---------la~~~~~~g~~~  534 (781)
                      ...+|.+-++.++.+.|++.++...++.+-.    ..++    +-+.+..|....+...         -|..+...|.++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            9999999999999999998776655554432    1111    1122222322222111         233444445555


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      .++.++..-+.....+...-.+ +..+.+..+++.++....+++..+|.........+.+-.-.|...++...++.++.+
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~  330 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV  330 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence            5555554444333322222222 334444445555555555555444443333333333333334444555555555555


Q ss_pred             CCCC
Q 003991          615 DPSN  618 (781)
Q Consensus       615 ~p~~  618 (781)
                      .|.+
T Consensus       331 ~P~~  334 (536)
T KOG4648|consen  331 APAV  334 (536)
T ss_pred             cccc
Confidence            4443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.91  E-value=8e-08  Score=86.63  Aligned_cols=128  Identities=18%  Similarity=0.156  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR  455 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  455 (781)
                      ...+..+...+..++...+...++.+++.+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   ..+.+.+
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344555555667888888888888888888877   4567778888888888888888888888876554   3467778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  510 (781)
                      +.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            8888888888888888755 23333446677777888888888888888777663

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.90  E-value=3.2e-08  Score=100.23  Aligned_cols=183  Identities=19%  Similarity=0.231  Sum_probs=129.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHcCCHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKAL  571 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~  571 (781)
                      ++++|...|.++              |..|...|++++|...|.++......      -...+...+.++.+. ++++|+
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            556666666553              55666667777777777766554321      134555666666555 999999


Q ss_pred             HHHHHHHhhCC--CC----HHHHHHHHHHHHHC-CCHHHHHHHHHHhhccCCC--C----HHHHHHHHHHHHHhCCHHHH
Q 003991          572 ECLQQVLYIDK--RF----SKAYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPS--N----IECLYLRASCYHAIGEYREA  638 (781)
Q Consensus       572 ~~~~~al~~~~--~~----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A  638 (781)
                      .+|++++.+.-  +.    ...+..+|.+|... |++++|+++|++|+.....  .    ..++..+|.++..+|+|++|
T Consensus        95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            99999987632  21    45688899999998 9999999999999987322  2    35778999999999999999


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHH
Q 003991          639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (781)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  695 (781)
                      +..|+++....-++....+.....++..++++...++...|...|+.....+|+|..
T Consensus       175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            999999988654443322333345567777888889999999999999988987754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.90  E-value=5.6e-08  Score=90.59  Aligned_cols=118  Identities=20%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER  489 (781)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  489 (781)
                      ....+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345566777777777777777777777777665542   34666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  550 (781)
                      |.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            6666666665555544444322                    2455666666666665554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.89  E-value=9.7e-08  Score=103.68  Aligned_cols=137  Identities=18%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CC
Q 003991          380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NP  446 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p  446 (781)
                      .+..++..|..++..++   +..|+.+|+++++.+|+++.++..++.++....        +...+.....+++..  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            34445677777766554   678888888888888888888877777665432        123334444443332  44


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (781)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~  517 (781)
                      ..+.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            4455555555555555566666666666666555 345555555555556666666666666655555554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.89  E-value=1.1e-07  Score=85.81  Aligned_cols=117  Identities=22%  Similarity=0.121  Sum_probs=84.2

Q ss_pred             HcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~  602 (781)
                      ..++...+...++..+...|+.   ..+.+.+|.+++..|++++|+..|+.++...|+.   +.+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4667777777777777777766   4566677777778888888888888877766543   346667788888888888


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      +|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            888887652 3334446677778888888888888888887764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.87  E-value=5.3e-08  Score=85.58  Aligned_cols=114  Identities=13%  Similarity=0.109  Sum_probs=103.5

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      .+..+....+...+..+..|..++..|++++|..+|+-+.-.+|.++..+..+|.++..+++|++|+..|..+..+++++
T Consensus        25 tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         25 TLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            44555666777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  483 (781)
                      +...+..|.|+..+|+.+.|+.+|..++. .|.+.
T Consensus       105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        105 YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            99999999999999999999999999998 45443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.87  E-value=1e-08  Score=78.01  Aligned_cols=64  Identities=31%  Similarity=0.408  Sum_probs=53.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5678888888888888888888888888888888888888888888888888888888888874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.86  E-value=3.7e-08  Score=81.67  Aligned_cols=97  Identities=28%  Similarity=0.414  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      ++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 003991          464 ESVEAIQDLSKALEFEP  480 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p  480 (781)
                      +++.|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            66666666666655544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.86  E-value=8.1e-09  Score=83.16  Aligned_cols=81  Identities=32%  Similarity=0.423  Sum_probs=57.3

Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991          564 LANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD  641 (781)
Q Consensus       564 ~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  641 (781)
                      .|+++.|+.++++++...|.  +...++.+|.++.+.|++++|+.++++ ...+|.++...+.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56777777777777777774  345566677777777777777777777 666676667777777777777777777777


Q ss_pred             HHHH
Q 003991          642 YDAA  645 (781)
Q Consensus       642 ~~~a  645 (781)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7664

>PRK11906 transcriptional regulator; Provisional

Probab=98.86  E-value=2e-07  Score=95.56  Aligned_cols=158  Identities=12%  Similarity=0.033  Sum_probs=106.1

Q ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 003991          419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA  483 (781)
Q Consensus       419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  483 (781)
                      +..|...+..+   ..+.|+.+|.+++   .++|....++..++.|+...         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            66666665554   3566888888888   88888888888888887654         234566667777777777777


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH-HH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ  562 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~  562 (781)
                      .++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777654333222222 22


Q ss_pred             HcCCHHHHHHHHHH
Q 003991          563 DLANSEKALECLQQ  576 (781)
Q Consensus       563 ~~g~~~~A~~~~~~  576 (781)
                      -....++|+..|-+
T Consensus       419 ~~~~~~~~~~~~~~  432 (458)
T PRK11906        419 VPNPLKNNIKLYYK  432 (458)
T ss_pred             cCCchhhhHHHHhh
Confidence            24445555555543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.86  E-value=6.5e-08  Score=89.89  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 003991          395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI  469 (781)
Q Consensus       395 g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~  469 (781)
                      ..|..+...+...++.++..  ...++.+|.++...|++++|+..|.+++.+.|+.   +.++..+|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            34555555555554444433  4455677777777777777777777777665542   346677777777777777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          470 QDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      ..+++++.+.|.....+..+|.++.
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            7777777777766666666666666

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.85  E-value=8.3e-08  Score=78.95  Aligned_cols=112  Identities=20%  Similarity=0.235  Sum_probs=95.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHcC
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL----QAYILKGCAFSALG  117 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g  117 (781)
                      +-.+-..|+.+.|++.|.++|.+. .++.+|.|||.++--+|+-++|+.++++|+++--.-.    .+|+.+|.+|..+|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            334557899999999999999999 7889999999999999999999999999999974433    38999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHcc
Q 003991          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQD  156 (781)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (781)
                      +.+.|..+|+.|.++  +++-..-+++.++|....+.+-
T Consensus       130 ~dd~AR~DFe~AA~L--GS~FAr~QLV~lNPYAAlCN~M  166 (175)
T KOG4555|consen  130 NDDAARADFEAAAQL--GSKFAREQLVELNPYAALCNQM  166 (175)
T ss_pred             chHHHHHhHHHHHHh--CCHHHHHHHHhcChHHHHHHHH
Confidence            999999999999654  4566667778888877655433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.84  E-value=3.7e-08  Score=86.56  Aligned_cols=109  Identities=6%  Similarity=0.027  Sum_probs=94.9

Q ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHH
Q 003991          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (781)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (781)
                      ..+.++..+..+..|.-++..|++++|...|+-+...+|.++..+..||.++..+++|++|+..|..+..+++++|...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            34455667788888888999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          624 LRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      ..|.||..+|+.+.|+.+|+.+++ .|.+.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            999999999999999999999988 45543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.83  E-value=7.4e-07  Score=100.71  Aligned_cols=218  Identities=13%  Similarity=0.080  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003991          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS----ADILHERGIVNFKFKDFNAAVED  505 (781)
Q Consensus       431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~~  505 (781)
                      -.+..+.|++.+.-+|+..-.|..+...+...++.++|.+..++|+.. ++..    ..+|..+-++...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            345677889999999999999999999999999999999999999975 3433    33566666666666777778888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 003991          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--  583 (781)
Q Consensus       506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--  583 (781)
                      |++|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..+++.++-+.|...+.+|+..-|.  
T Consensus      1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            999887643 35678889999999999999999999999999988999999999999999999999999999999887  


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +.......|.+.++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+-+...|++++.+.
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            778888899999999999999999999999999999999999999999999999999999999875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.82  E-value=7.5e-08  Score=89.45  Aligned_cols=125  Identities=12%  Similarity=0.067  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHH
Q 003991          567 SEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKD  641 (781)
Q Consensus       567 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~  641 (781)
                      +..+...+...++..+..  ...++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+.+
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            445555554444444433  5567888888888888888888888888776653   45788899999999999999999


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhH-------HHHHhhhcCCCc
Q 003991          642 YDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE-------FCWFDIDGDIDP  691 (781)
Q Consensus       642 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-------~~~~~~~~~~~p  691 (781)
                      |++++.++|.....+..++.++...|......|++..|       +.+|.++...+|
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p  151 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP  151 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999988888888888888888777777776644       445555555555

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1e-07  Score=95.20  Aligned_cols=147  Identities=27%  Similarity=0.266  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  564 (781)
                      .....|..+++.|+|..|...|++++..-....            .-+.++....  .++     -..++.+++.++.++
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl  270 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYLKL  270 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHHhh
Confidence            445567777777777777777777765432110            0000111100  001     134667788888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHH
Q 003991          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYD  643 (781)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~  643 (781)
                      ++|.+|+...++++..+|++..+++..|.++..+|+|+.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888877777777777766665544 56677


Q ss_pred             HHHhhcc
Q 003991          644 AALDLEL  650 (781)
Q Consensus       644 ~al~~~p  650 (781)
                      .++...+
T Consensus       351 ~mF~k~~  357 (397)
T KOG0543|consen  351 NMFAKLA  357 (397)
T ss_pred             HHhhccc
Confidence            6666544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=3.2e-07  Score=90.40  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 003991          380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (781)
Q Consensus       380 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (781)
                      +....|..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|.+++...|++   ++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            356677778776 56799999999999999999987   5799999999999999999999999999988874   7788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI  485 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  485 (781)
                      +.+|.++...|++++|...|+++++..|+...+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            999999999999999999999999999987654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.77  E-value=1.1e-06  Score=85.53  Aligned_cols=234  Identities=17%  Similarity=0.209  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC--HHHHH
Q 003991          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEP----NS--ADILH  487 (781)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~--~~~~~  487 (781)
                      -....|.-++...++++|+....+.+..-.+..   ..+-.+..+...+|.+++++..--..+....    ..  -+++.
T Consensus         8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l   87 (518)
T KOG1941|consen    8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL   87 (518)
T ss_pred             HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777888899999999988887544432   3444556777888888887766544443321    11  45788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHH
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGH  556 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  556 (781)
                      +++..+....++.+++.+-+..+..-...     ..+...++.++..++.++++++.|+++++...++      ..++..
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            89999999999999999988887764332     3566779999999999999999999999875443      467889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC------CCCHH
Q 003991          557 LTQFYQDLANSEKALECLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID------PSNIE  620 (781)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~  620 (781)
                      +|.++....++++|.-+..++.++....          ..+++.++..+..+|....|.++.+++.++.      +-...
T Consensus       168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar  247 (518)
T KOG1941|consen  168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR  247 (518)
T ss_pred             HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence            9999999999999999999998764321          3457788999999999999999999997762      22356


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          621 CLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      ....+|.+|...|+.+.|..-|++|...-.
T Consensus       248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~  277 (518)
T KOG1941|consen  248 CLLCFADIYRSRGDLERAFRRYEQAMGTMA  277 (518)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence            777899999999999999999999987643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.76  E-value=4.2e-05  Score=75.61  Aligned_cols=297  Identities=16%  Similarity=0.108  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHH
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARA  460 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~  460 (781)
                      -+..|.+....|+-..|.+.-.+.-+.-..  .+-++..-+..-.-.|+++.|.+-|+.++. +|..- -.+..+-.--.
T Consensus        87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq  165 (531)
T COG3898          87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ  165 (531)
T ss_pred             HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence            345677777889999999988887654333  345566667888889999999999998875 33321 12222333335


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHH-HHcCCH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK---SAYTYLGLAL-SSIGEY  533 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---p~~~---~~~~~la~~~-~~~g~~  533 (781)
                      ..|..+.|..+-+++....|.-+.++...-...+..|+|+.|++..+......   ++..   .+...-+... .-..+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            67999999999999999999999988888888899999999999988765432   2211   1111112222 123467


Q ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh--
Q 003991          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG--  611 (781)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--  611 (781)
                      ..|...-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|. +.+    +..|....--+.++.-++++  
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~  320 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999998885 333    33343333334445444444  


Q ss_pred             -hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH-HHHhchhhHHHHHhhhcC-
Q 003991          612 -LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFCWFDIDGD-  688 (781)
Q Consensus       612 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~-  688 (781)
                       ..+.|++.+..+..+..-+..|++..|..--+.+....|...        .|.-++... -..|+-.+...|+.++.. 
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--------~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--------AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--------HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             456899999999999999999999999999999999998754        223333332 234666667777766543 


Q ss_pred             -CCcccH
Q 003991          689 -IDPLFK  694 (781)
Q Consensus       689 -~~p~~~  694 (781)
                       -+|.|.
T Consensus       393 PrdPaW~  399 (531)
T COG3898         393 PRDPAWT  399 (531)
T ss_pred             CCCCccc
Confidence             345443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.76  E-value=2.1e-05  Score=85.85  Aligned_cols=227  Identities=13%  Similarity=0.009  Sum_probs=163.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  470 (781)
                      ....+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678889999999999999999888888889999999999999988887777777888888888889999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH---------HHHHHHH
Q 003991          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEY---------KKAEEAH  540 (781)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~---------~~A~~~~  540 (781)
                      +|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++........+..+ ....         .-|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999997 77778888888888888776666666666778776544443333332 2222         2345555


Q ss_pred             HHHHhhC-ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          541 LKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQVL--YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       541 ~~al~~~-~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      ++.++.. +-. ..-....-.++..+|++++|...+..-+  ...+.+...-......+...+++.+-.+...+++...+
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            6666554 211 1112223345666888999988884332  33344444445566777788888888888888888888


Q ss_pred             CC
Q 003991          617 SN  618 (781)
Q Consensus       617 ~~  618 (781)
                      ++
T Consensus       258 Dd  259 (932)
T KOG2053|consen  258 DD  259 (932)
T ss_pred             cc
Confidence            86

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=4e-06  Score=78.67  Aligned_cols=230  Identities=15%  Similarity=0.042  Sum_probs=170.9

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 003991          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (781)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (781)
                      .+-++..|+|..++..-.+.-... ........+.+.|..+|++...+.-....-   .....+...++.....-++.+.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            445667889998888777665443 667777888899999998876655443332   1123455666666666666666


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          502 AVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (781)
Q Consensus       502 A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (781)
                      -+..+.+.+...  ..+......-|.++...|++++|++.....     .+.++...-..++.+..+.+-|.+.+++...
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            666555544432  233345556688899999999999988763     3456666777888999999999999999988


Q ss_pred             hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          580 IDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       580 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      ++.+.  .+..||..+.+    .+++.+|.-+|+..-+..|..+.....++.|.+.+|+|++|...++.++..++++++.
T Consensus       166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            76643  34444444433    4578999999999999888889999999999999999999999999999999999997


Q ss_pred             HHHHHHH
Q 003991          656 FVLQCLA  662 (781)
Q Consensus       656 ~~~~~~~  662 (781)
                      +.++...
T Consensus       244 L~Nliv~  250 (299)
T KOG3081|consen  244 LANLIVL  250 (299)
T ss_pred             HHHHHHH
Confidence            7666444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.74  E-value=3.2e-05  Score=76.43  Aligned_cols=262  Identities=18%  Similarity=0.091  Sum_probs=203.3

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      ..+-..+.-+...+-.|+++.|.+-|+.++. +|+. .-.+..+-.-....|..+.|..+.+++....|.-+.++...-.
T Consensus       118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            3466777788889999999999999998874 4432 1122233333456899999999999999999999999888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC---CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFE---PNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~---p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      ..+..|+++.|+++.+......   ++..     ..+...+... -..+...|...-.++.++.|+...+-..-+..++.
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence            8999999999999998765432   2211     1122222222 23468889999999999999999888899999999


Q ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ---QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      .|+..++-.+++.+.+..|.- .++  +..++.+.|+.  ++.-++   +...+.|++.+.....+..-+.-|++..|..
T Consensus       276 d~~~rKg~~ilE~aWK~ePHP-~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa  350 (531)
T COG3898         276 DGNLRKGSKILETAWKAEPHP-DIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA  350 (531)
T ss_pred             ccchhhhhhHHHHHHhcCCCh-HHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence            999999999999999988863 222  22233345554  444444   4456789999999999999999999999999


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhh
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL  648 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  648 (781)
                      --+.+....|. ..++..++.+-... |+-.+...++-++++-
T Consensus       351 ~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         351 KAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            99999999998 67888889888766 9999999999999974

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.73  E-value=4.4e-06  Score=78.99  Aligned_cols=191  Identities=15%  Similarity=0.142  Sum_probs=130.9

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---H
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---E  450 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~  450 (781)
                      ....+..++..|...++.|++++|+..|+.+...+|..   ..+.+.++.++++.++++.|+...++-+.+.|.++   .
T Consensus        30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            34468899999999999999999999999999988765   46889999999999999999999999999998775   4


Q ss_pred             HHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          451 AWKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (781)
Q Consensus       451 ~~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  522 (781)
                      +++..|.++...-        -..+|+..|+..+...|++.-+-.....+           ..++..+      ..--..
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~  172 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMA  172 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHH
Confidence            6777777765431        24567778888888888763221111110           0000000      111134


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (781)
                      +|..|.+.|.+..|+.-++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            5667777777777777777777765544   4566666677777777777665543333333443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.70  E-value=3.3e-07  Score=90.32  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHH
Q 003991          551 LEAWGHLTQFY-QDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLY  623 (781)
Q Consensus       551 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~  623 (781)
                      ...++..+..+ ...|++++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|++++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45555566554 45678888888888888888876   468888888888888888888888888877776   367888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          624 LRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .+|.++..+|++++|...|+++++..|++..
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            8888888888888888888888888888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.70  E-value=9e-09  Score=99.47  Aligned_cols=109  Identities=21%  Similarity=0.286  Sum_probs=98.4

Q ss_pred             cccc-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc
Q 003991           25 ELVR-VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (781)
Q Consensus        25 ~~~~-~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~  102 (781)
                      +.++ .++++..+.+.|....+++..|++++||+.|+++|+++ +....|..||.++++++....|+.+|..|++++|+.
T Consensus       102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence            3344 34456677788899999999999999999999999999 666779999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991          103 LQAYILKGCAFSALGRKEEALSVWEKGYEHA  133 (781)
Q Consensus       103 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  133 (781)
                      .+.|-.+|.+...+|++++|.++|..+..+.
T Consensus       182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  182 AKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            9999999999999999999999999997654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.67  E-value=5.5e-07  Score=93.26  Aligned_cols=115  Identities=22%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      +...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.|+.
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            33445556666666665555543   344456666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      +.++++...|++...|+.|+.+|..+|+++.|+..++.
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            66666666666666666666666666666666655543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.66  E-value=8.7e-06  Score=71.91  Aligned_cols=150  Identities=17%  Similarity=0.123  Sum_probs=123.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       496 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      .=+.+....-..+.+...|... -.+.+|..+...|++.+|...|++++. +.-.++..+..+++..+..+++..|...+
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          69 KLDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3345555555556666666543 356789999999999999999999875 45677888999999999999999999999


Q ss_pred             HHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          575 QQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       575 ~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      ++..+.+|.  .+.....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            999988873  4777888999999999999999999999999988 78888999999999998888877666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=1.5e-05  Score=85.54  Aligned_cols=253  Identities=17%  Similarity=0.117  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      .-...|......|-.++|..+|.+.-..        -.+-..|...|.+++|.+..+.--.+  .-...|++.+..+...
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhh
Confidence            3344566777888888888888886442        24455666777777776655432111  1134567777777777


Q ss_pred             CCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------
Q 003991          463 GESVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL----------  512 (781)
Q Consensus       463 g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------  512 (781)
                      ++.+.|+++|+++          +.-+|          .++..|...|..+...|+.+.|+.+|..+-..          
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q  951 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ  951 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence            7777887777764          22233          23456666777777778888888777765432          


Q ss_pred             -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------Cccc--------------HHHHHHHHHHH
Q 003991          513 -----------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--------------LEAWGHLTQFY  561 (781)
Q Consensus       513 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~--------------~~~~~~la~~~  561 (781)
                                 ...+..+.+.+|+.|...|++.+|+.+|.+|-..      ..++              +.-....|..|
T Consensus       952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen  952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred             cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence                       2345567788999999999999999888876433      2111              01112233344


Q ss_pred             HHcC-CHHHHHHHHHHH------H-----------------hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHh-----
Q 003991          562 QDLA-NSEKALECLQQV------L-----------------YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSG-----  611 (781)
Q Consensus       562 ~~~g-~~~~A~~~~~~a------l-----------------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----  611 (781)
                      ...| ....|...|.++      +                 .++| .++.....-+..+....+|++|...+-.+     
T Consensus      1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred             HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4444 555555555443      1                 1233 45777788888888999999988765443     


Q ss_pred             -hcc----------------CCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          612 -LGI----------------DPS---------NIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       612 -l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                       +.+                .|.         ...++..+|.++.++|.|..|.+-|.+|
T Consensus      1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence             332                111         1357889999999999999998888765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.63  E-value=9.7e-07  Score=91.47  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003991          424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV  503 (781)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  503 (781)
                      .+...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            333445555555555555554443   33345555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       504 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      ...++++...|.+...|..|+.+|...|++++|+..++.
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            555555555555555555555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.58  E-value=2e-05  Score=74.70  Aligned_cols=188  Identities=19%  Similarity=0.082  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY  522 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~  522 (781)
                      +..++.-|...+..|++++|...|+.+....|..   ..+...++..+++.+++++|+...++-+.+.|.++   .+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4566777777777777777777777777766654   44666677777777777777777777777766654   34455


Q ss_pred             HHHHHHHcC--------CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991          523 LGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (781)
Q Consensus       523 la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (781)
                      .|.+++..=        -..+|+..|...+...|++..+-.....           +..+...+      ..--...|..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Iary  176 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIARY  176 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHHHH
Confidence            555544321        1234555555555555554221110000           00000000      1122456888


Q ss_pred             HHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          595 LHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      |.+.|.+..|+.-++.+++..|+.   .+++..+..+|..+|-.++|.+.-.-.-...|+++
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999887764   46788889999999999999876655555556653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.57  E-value=1.3e-06  Score=74.18  Aligned_cols=56  Identities=21%  Similarity=0.145  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD  643 (781)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~  643 (781)
                      ++.+|..+..+|++++|+..+++++...|+   +..+...++.++...|++++|+..+-
T Consensus        41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            333344444444444444444444333333   33333333334444444444444333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.57  E-value=2.4e-07  Score=72.30  Aligned_cols=65  Identities=26%  Similarity=0.309  Sum_probs=56.5

Q ss_pred             HHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 003991           76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL  140 (781)
Q Consensus        76 A~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  140 (781)
                      +.+|++.++|++|++.+++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+.+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            45788889999999999999999999999999999999999999999999999988888776553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.56  E-value=2.6e-06  Score=72.42  Aligned_cols=96  Identities=23%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLR  591 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l  591 (781)
                      .+++.+|.++-..|+.++|+.+|++++......   ..++..+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            568899999999999999999999999975443   678999999999999999999999999999888   77788889


Q ss_pred             HHHHHHCCCHHHHHHHHHHhhc
Q 003991          592 GLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~  613 (781)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=2.8e-07  Score=70.81  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777777666655554

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=1.6e-05  Score=80.54  Aligned_cols=309  Identities=15%  Similarity=0.064  Sum_probs=190.4

Q ss_pred             HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE  440 (781)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (781)
                      ++.+.....+++.+++.++..++..|+|..|.+.+... +...|.        .-..|.++|.++++.|.|..+..+|.+
T Consensus       229 vK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k  308 (696)
T KOG2471|consen  229 VKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK  308 (696)
T ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence            34445556688999999999999999999999887654 222232        123467899999999999999999999


Q ss_pred             HHHh---------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---H
Q 003991          441 AIQS---------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---F  499 (781)
Q Consensus       441 al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~  499 (781)
                      +++.         .|         ...+++++.|..|...|++-.|.++|.++......+|..|..++.+.+...+   .
T Consensus       309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~  388 (696)
T KOG2471|consen  309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLL  388 (696)
T ss_pred             HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhh
Confidence            9961         11         2356889999999999999999999999999999999999999998765321   1


Q ss_pred             HHHHHHHHH--------------HHHh-------CCC---CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh----
Q 003991          500 NAAVEDLSA--------------CVKL-------DKE---NKSAYTYLGLALSSIG-----EYKKAEEAHLKAIQL----  546 (781)
Q Consensus       500 ~~A~~~~~~--------------a~~~-------~p~---~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~----  546 (781)
                      ++......+              .+-+       .+.   -+..-..++.++.+.+     .-..--..+.-+...    
T Consensus       389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g  468 (696)
T KOG2471|consen  389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG  468 (696)
T ss_pred             hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence            111111100              0000       000   0111111222222111     000000000000000    


Q ss_pred             ------------------------Cc-cc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991          547 ------------------------DR-NF-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (781)
Q Consensus       547 ------------------------~~-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (781)
                                              .| ..           ..++...+.+-...|+.-.|+..-++.+.. |+...++..
T Consensus       469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kf  547 (696)
T KOG2471|consen  469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKF  547 (696)
T ss_pred             CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHH
Confidence                                    01 11           124456677777889999999988888765 455666666


Q ss_pred             HHHHH-----HHCCCHHHHHHHHHHhh------c-----------------cCCC----------C-----HHHHHHHHH
Q 003991          591 RGLLL-----HGLGQHKKAIKDLSSGL------G-----------------IDPS----------N-----IECLYLRAS  627 (781)
Q Consensus       591 la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~-----~~~~~~la~  627 (781)
                      +|.+|     .-+.+..+|...+.--+      .                 ++|.          .     ...++++|.
T Consensus       548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~  627 (696)
T KOG2471|consen  548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA  627 (696)
T ss_pred             HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence            65554     45667777766554311      0                 0111          1     246789999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991          628 CYHAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (781)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  686 (781)
                      .+.-+|++++|..++..|..+-|  .++++....  +|..     ..+|+...|...+++.
T Consensus       628 a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~la--vyid-----L~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  628 ALALQGHHDQAKSLLTHAATLLHSLVNVQATVLA--VYID-----LMLGRSQDALARLKQC  681 (696)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhhccccHHHHHHH--HHHH-----HhcCCCcchHHHHHhc
Confidence            99999999999999999998877  344433322  2222     2455555565555443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=0.00021  Score=66.98  Aligned_cols=226  Identities=14%  Similarity=0.080  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSN-------------PSA------GEAWKRRGQARAALGESVEAIQDLSKA  475 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (781)
                      ...|...-.++.+...+++|..-+...-..+             |+.      .......|.+....|+..+.+.-+...
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L  148 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL  148 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3455555556666666666665554443332             111      112333455556667766666555544


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHH
Q 003991          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAW  554 (781)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~  554 (781)
                      ...       ...+..........+..++.+++-+      ..+.+.+..++...|.|.-.+..+.+.++.+ |..+...
T Consensus       149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~  215 (366)
T KOG2796|consen  149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL  215 (366)
T ss_pred             HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence            321       1112222222333355566665543      3466778888899999999999999999988 5678888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991          555 GHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (781)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (781)
                      ..+|.+-++.|+.+.|..+|+++-+..      .....+..+.+.++.-.+++..|...|.+++..+|.++.+..+.|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            899999999999999999999665332      23455677888899999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          629 YHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      +.-+|+..+|++..+.+++..|...
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999753

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=1.5e-05  Score=80.86  Aligned_cols=264  Identities=18%  Similarity=0.161  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKE---------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (781)
                      ++..+|.++++.|.|.-+..+|.++++.         .|         ...+++++.|..|...|+.-.|.++|.++...
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            4578999999999999999999999961         11         24578999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------HHHh-------CCCC---HHHHHHHHHHHHhcC
Q 003991          445 NPSAGEAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF-------EPNS---ADILHERGIVNFKFK  497 (781)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~--------------al~~-------~p~~---~~~~~~la~~~~~~~  497 (781)
                      ...++..|.+++.+++...+   .++......+              .+-+       .|..   +..-..++.+..+.+
T Consensus       365 fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrna  444 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNA  444 (696)
T ss_pred             HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhh
Confidence            99999999999999875421   1111111111              0000       0000   111112222221111


Q ss_pred             -----CHHHHHHHHHHHHHh----------------------------CC-CCH-----------HHHHHHHHHHHHcCC
Q 003991          498 -----DFNAAVEDLSACVKL----------------------------DK-ENK-----------SAYTYLGLALSSIGE  532 (781)
Q Consensus       498 -----~~~~A~~~~~~a~~~----------------------------~p-~~~-----------~~~~~la~~~~~~g~  532 (781)
                           .-..--..+.-+...                            .| ..+           .++...+.+-..+|+
T Consensus       445 l~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd  524 (696)
T KOG2471|consen  445 LYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGD  524 (696)
T ss_pred             hhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                 000000000000000                            01 111           234556777888999


Q ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------h-----------------hCC--
Q 003991          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQVL------Y-----------------IDK--  582 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~~--  582 (781)
                      .-.|+..-.+.++. |+...++..+|.+|     +.+.+..+|...+.--+      .                 ++|  
T Consensus       525 ~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~  603 (696)
T KOG2471|consen  525 PIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPST  603 (696)
T ss_pred             hhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcC
Confidence            99999999998875 45566666666655     45677777776654411      0                 011  


Q ss_pred             ----C----C-----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          583 ----R----F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       583 ----~----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                          +    .     ...++++|.++.-+|++++|..++..+..+-+  .++.+....-.+-.++|+...|...+++.--
T Consensus       604 ~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~  683 (696)
T KOG2471|consen  604 GRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH  683 (696)
T ss_pred             CCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence                0    0     12478899999999999999999999988877  4566776666777889999999998887643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.53  E-value=4.4e-07  Score=70.83  Aligned_cols=67  Identities=28%  Similarity=0.459  Sum_probs=55.0

Q ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH
Q 003991          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL  658 (781)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  658 (781)
                      ..++...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4567788888888888888888888888888888888888888888888888888888888775443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.53  E-value=7.3e-05  Score=81.84  Aligned_cols=226  Identities=16%  Similarity=0.106  Sum_probs=177.1

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003991          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (781)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (781)
                      ...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            45689999999999999999999999999999999999999999999888888888888999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH-HHHHHHHHHHcCCH---------HHHHHHHH
Q 003991          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQDLANS---------EKALECLQ  575 (781)
Q Consensus       506 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~la~~~~~~g~~---------~~A~~~~~  575 (781)
                      |++++..+|+ .+....+-.+|.+.+.|.+-.+.--+..+..|+.+.. |.-+..+.......         .-|...++
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence            9999999999 8888888889999998887776666666778877544 44444443333222         33555666


Q ss_pred             HHHhhC-CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHh--hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          576 QVLYID-KRFSK-AYHLRGLLLHGLGQHKKAIKDLSSG--LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       576 ~al~~~-~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      +.++.. +-... -....-.++..+|++++|...+..-  -...+.+...-......+...+++.+-.+...+++...+|
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            666655 32211 1223345677889999999998433  2334445555556777888999999999999999999999


Q ss_pred             c
Q 003991          652 S  652 (781)
Q Consensus       652 ~  652 (781)
                      +
T Consensus       259 d  259 (932)
T KOG2053|consen  259 D  259 (932)
T ss_pred             c
Confidence            8

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=3.7e-05  Score=82.70  Aligned_cols=226  Identities=15%  Similarity=0.080  Sum_probs=144.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH--------HHHH---hCCCcHHHHHHHHHHH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT--------EAIQ---SNPSAGEAWKRRGQAR  459 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~---~~p~~~~~~~~la~~~  459 (781)
                      |...|+.+.|.+..+-+     ....+|-++|....+..+.+-|.-++-        +++.   .+|+.  .-...+.+.
T Consensus       738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLA  810 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLA  810 (1416)
T ss_pred             EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHH
Confidence            44578888887766543     234678888888877777776655542        1222   13332  223456667


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ..+|..++|...|++.-..        -.+-.+|...|.|++|.+..+.-=++  .-...|++.|.-+...++.+.|+++
T Consensus       811 ieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHH
Confidence            7888888888888887543        34555677788888887766542211  1235677788888888888888888


Q ss_pred             HHHHH----------hhCcc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991          540 HLKAI----------QLDRN----------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       540 ~~~al----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (781)
                      |+++-          .-+|.          ++..|...|..+...|+.+.|+.+|..+-        -|+.+..+..-+|
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qG  952 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQG  952 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeecc
Confidence            87652          22222          24456666777777777777777777653        2455555556666


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      +.++|-.+.++     ..+-.+-+.+|+.|...|++.+|+.+|.+|-
T Consensus       953 k~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  953 KTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             CchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            66666554432     3445667777777777777777777776653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.50  E-value=5e-06  Score=71.66  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=75.5

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA  451 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  451 (781)
                      ...+..++..|...+..|+|.+|++.|+.+....|..   ..+.+.+|.+|+..+++++|+..+++-++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            3457889999999999999999999999999888764   57889999999999999999999999999999875   47


Q ss_pred             HHHHHHHHHHcCC
Q 003991          452 WKRRGQARAALGE  464 (781)
Q Consensus       452 ~~~la~~~~~~g~  464 (781)
                      ++..|.++..+..
T Consensus        87 ~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   87 YYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888877655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=1.7e-06  Score=77.13  Aligned_cols=97  Identities=26%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          558 TQFYQDLANSEKALECLQQVLYIDKRF-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      |+-++..|+|++|..-|..++...|..     ...|.+.|.++++++.++.|+..+.++++++|....++...|.+|.++
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            444444555555555555555554433     123445555555566666666666666666665555555556666666


Q ss_pred             CCHHHHHHHHHHHHhhccCcHH
Q 003991          633 GEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       633 g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ..+++|+..|++.++.+|...+
T Consensus       182 ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHH
Confidence            6666666666666666655544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.50  E-value=5.1e-07  Score=69.30  Aligned_cols=61  Identities=31%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      ..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555444433

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.49  E-value=4.6e-06  Score=79.75  Aligned_cols=105  Identities=22%  Similarity=0.286  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ  457 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  457 (781)
                      .|..|..++..|+|..|...|...++..|+.   +.++|.||.+++.+|+++.|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            8888999999999999999999999999885   5799999999999999999999999999987765   688999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSADILHE  488 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  488 (781)
                      +...+|+.++|...|+++++..|....+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999988665543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.47  E-value=2.8e-06  Score=81.17  Aligned_cols=101  Identities=13%  Similarity=0.027  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---HHHHHHHHH
Q 003991          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRAS  627 (781)
Q Consensus       554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  627 (781)
                      .+..|.-++..|+|..|...|..-++..|+.   +.+++.||.+++.+|+|+.|...|..+++..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4555555666667777777777777666654   5567777777777777777777777777766553   567777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          628 CYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +...+|+.++|...|+++++..|+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            777777777777777777777777655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.42  E-value=3.9e-05  Score=67.94  Aligned_cols=147  Identities=10%  Similarity=0.089  Sum_probs=103.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (781)
                      =+.+....-..+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...++
T Consensus        70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3445555555555555553 34566777777788888888888877765 355667777778888888888888888888


Q ss_pred             HHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991          542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       542 ~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (781)
                      +..+.+|..  +.....+|..+...|.+.+|...|+.++...|+ +.+....+..+.++|+..+|..-+...
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            877777643  666777778888888888888888888877775 666677777777888777666555443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00039  Score=65.26  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=175.4

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------CC------HHHHHHHHHHHHHccCHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-------------MY------PEALIGRGTARAFQRELEAAISDFT  439 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-------------~~------~~~~~~la~~~~~~g~~~~A~~~~~  439 (781)
                      .....|-.+-.++.+...+++|...+...-+.+.             +.      ......-|.+....|+..+.+.-+.
T Consensus        67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~  146 (366)
T KOG2796|consen   67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH  146 (366)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            3456666777778888888888877766544331             11      1223445666777787777766555


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Q 003991          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKS  518 (781)
Q Consensus       440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~  518 (781)
                      .....       -..+..........+..+..+++-+.      .+.+.+..++...|.|.-.+..+.+.++.+ |..+.
T Consensus       147 ~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~  213 (366)
T KOG2796|consen  147 KLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ  213 (366)
T ss_pred             HHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence            54331       11122223333334666666666543      577888899999999999999999999988 56788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  592 (781)
                      ....+|.+.++.|+.+.|..+|+..-+..      .....+..+.+.++.-.+++.+|...+.+++..+|.++.+-++.|
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA  293 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA  293 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence            88899999999999999999998654332      223556677888899999999999999999999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHH
Q 003991          593 LLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCY  629 (781)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~  629 (781)
                      .|+...|+..+|++.++.++...|...   ...+++..+|
T Consensus       294 LcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  294 LCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            999999999999999999999999742   3444554444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.37  E-value=1.2e-06  Score=89.99  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH  132 (781)
Q Consensus        67 ~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~~  132 (781)
                      +++..++|+|.+|+++|+|++|+..|++||+++|++..+   |+++|.+|..+|++++|+.+|++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345559999999999999999999999999999999965   999999999999999999999999654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.0012  Score=67.56  Aligned_cols=329  Identities=16%  Similarity=0.079  Sum_probs=199.4

Q ss_pred             HHhhHHHHHHHhhccCCc---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcc-
Q 003991          362 AKRNKKFCVTRISKSKSI---SVDFRLSRGIAQV-NEGKYASAISIFDQILKED---PMY----PEALIGRGTARAFQR-  429 (781)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g-  429 (781)
                      ..+..-.|+..+....+.   .+...+.+|..++ ...+++.|...++++..+.   |+.    ..+...++.+|.... 
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            344445566665554443   3456677776654 4789999999999988754   332    346677888888877 


Q ss_pred             CHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH--HHHHHhcCCH
Q 003991          430 ELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER--GIVNFKFKDF  499 (781)
Q Consensus       430 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l--a~~~~~~~~~  499 (781)
                      .+..|...+.+++++....+    ...+.++.++.-..++..|++.+.-..+....-    ..+.+.+  +.++....+.
T Consensus       104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~  183 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDD  183 (629)
T ss_pred             CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccH
Confidence            78889999999999876654    356778888888999999998854333222111    1122222  2333333332


Q ss_pred             HHHHHHHH---HHHHhCCCCHH-------HHHHHHH--------------------------------------------
Q 003991          500 NAAVEDLS---ACVKLDKENKS-------AYTYLGL--------------------------------------------  525 (781)
Q Consensus       500 ~~A~~~~~---~a~~~~p~~~~-------~~~~la~--------------------------------------------  525 (781)
                      .+-.....   +..+....++.       .+..+-.                                            
T Consensus       184 ~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~  263 (629)
T KOG2300|consen  184 YDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPI  263 (629)
T ss_pred             HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChH
Confidence            22222222   22221111110       0111111                                            


Q ss_pred             -------------HH-------HHcCCHHHHHHHHHHHHhhCcc------cH--------HHHHHHHHHHHHcCCHHHHH
Q 003991          526 -------------AL-------SSIGEYKKAEEAHLKAIQLDRN------FL--------EAWGHLTQFYQDLANSEKAL  571 (781)
Q Consensus       526 -------------~~-------~~~g~~~~A~~~~~~al~~~~~------~~--------~~~~~la~~~~~~g~~~~A~  571 (781)
                                   +|       ...|-+++|.++-++++.....      ..        ..+-.++.+-.-.|++.+|+
T Consensus       264 l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al  343 (629)
T KOG2300|consen  264 LFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEAL  343 (629)
T ss_pred             HHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence                         11       1234456666666555543211      11        12234455555678888887


Q ss_pred             HHHHHHHhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-C--HHHHHHHHHHHHHhCCHHHH
Q 003991          572 ECLQQVLYI---DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-N--IECLYLRASCYHAIGEYREA  638 (781)
Q Consensus       572 ~~~~~al~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A  638 (781)
                      +....+.+.   .|.       .+..+..+|......+.++.|...|..|.+.... +  ..+-.++|.+|...|+-+.-
T Consensus       344 ~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~  423 (629)
T KOG2300|consen  344 EEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL  423 (629)
T ss_pred             HHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH
Confidence            777666543   232       2445667788788888889999888888876443 2  23456788999988876655


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991          639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (781)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  690 (781)
                      .+.++..--.+..........+-++|-.|...+..+++++|...+....+..
T Consensus       424 y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  424 YKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            5544443333333445567778889999999999999999999998887765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.0001  Score=67.92  Aligned_cols=162  Identities=15%  Similarity=0.045  Sum_probs=114.2

Q ss_pred             HHcCCHHHHHHHHHHHHhhCcccHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHH
Q 003991          528 SSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDL-ANSEKALECLQQVLYIDKRF------SKAYHLRGLL  594 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~  594 (781)
                      ++.++..+|+.++++++++..+...      .+..+|.+|... .++++|+.+|+++-+.....      ...+...+..
T Consensus        84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y  163 (288)
T KOG1586|consen   84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY  163 (288)
T ss_pred             hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence            3455888888888888887655432      344788888765 88999999999987654432      2345566777


Q ss_pred             HHHCCCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991          595 LHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE  667 (781)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (781)
                      -...++|.+|+..|++.....-+++       ..++.-|.|++...+.-.+...+++..+++|...+..-..-+.-...+
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~a  243 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDA  243 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence            7888999999999999887655553       345667888888889999999999999999988776544444444444


Q ss_pred             HHHHHHhchhhHHHHHhhhcCC
Q 003991          668 IALYTASKINSEFCWFDIDGDI  689 (781)
Q Consensus       668 ~~~~~~~~~~~A~~~~~~~~~~  689 (781)
                      +.......|.+.+.-|+....+
T Consensus       244 ieE~d~e~fte~vkefDsisrL  265 (288)
T KOG1586|consen  244 IEEQDIEKFTEVVKEFDSISRL  265 (288)
T ss_pred             HhhhhHHHHHHHHHhhhccchH
Confidence            4444555566666666544443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=5.9e-05  Score=69.44  Aligned_cols=187  Identities=16%  Similarity=0.182  Sum_probs=126.9

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cc-cHHHHHHHHHHHHHcCCHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RN-FLEAWGHLTQFYQDLANSE  568 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~-~~~~~~~la~~~~~~g~~~  568 (781)
                      ..+.+++|.++|.++-              ..|....++..|=..|.++-...     .. ....|...+.+|. .++..
T Consensus        26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~   90 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE   90 (288)
T ss_pred             CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence            3446777777776653              33333344444444444443321     11 1334444455554 55899


Q ss_pred             HHHHHHHHHHhhCCCCHH------HHHHHHHHHHHC-CCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCH
Q 003991          569 KALECLQQVLYIDKRFSK------AYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEY  635 (781)
Q Consensus       569 ~A~~~~~~al~~~~~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~  635 (781)
                      +|+.++++++++..+...      .+..+|.+|..- .++++|+.+|+++-+.....      ...+...|..-..+++|
T Consensus        91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY  170 (288)
T KOG1586|consen   91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY  170 (288)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999988765433      345788888765 89999999999997764432      25677788888899999


Q ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          636 REAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       636 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      .+|+..|++.....-+++-.-+..--.++..|.++.-..+.-.+...+++-.+++|.|.+-
T Consensus       171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            9999999999988777766555555556667777776666666666777778889988765

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.34  E-value=1.6e-05  Score=68.64  Aligned_cols=104  Identities=17%  Similarity=0.099  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYL  624 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~  624 (781)
                      +..++.-|.-.+..|+|++|++.|+.+....|..   ..+...++.+|.+.+++++|+..+++.++++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3445555555555666666666666655555532   34555566666666666666666666666655543   45555


Q ss_pred             HHHHHHHhCC---------------HHHHHHHHHHHHhhccCcHH
Q 003991          625 RASCYHAIGE---------------YREAIKDYDAALDLELDSME  654 (781)
Q Consensus       625 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~  654 (781)
                      .|.++..+..               ...|...|++.++..|++.-
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            6655555544               77899999999999998753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.27  E-value=3.7e-06  Score=86.37  Aligned_cols=70  Identities=19%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA---YHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      .+|+++.+++++|.+|+..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            367778888888888888888888888888888888888754   8888888888888888888888888863

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.26  E-value=6.4e-06  Score=73.21  Aligned_cols=97  Identities=14%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH
Q 003991          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG----------EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL  670 (781)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  670 (781)
                      |+.|.+.++.....+|.+++.+++.|.++..+.          -+++|+.-|++|+.++|+..++++.++.++...|...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            566777777777777777777777777666553          3567888888889999999999888888888887754


Q ss_pred             HHH----hchhhHHHHHhhhcCCCcccHHHH
Q 003991          671 YTA----SKINSEFCWFDIDGDIDPLFKEYW  697 (781)
Q Consensus       671 ~~~----~~~~~A~~~~~~~~~~~p~~~~~~  697 (781)
                      -..    ..|++|..+|+++.+.+|++..|+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~  117 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR  117 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            333    568899999999999999999886

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.22  E-value=6.9e-05  Score=62.15  Aligned_cols=98  Identities=24%  Similarity=0.301  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQAR  459 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  459 (781)
                      +-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|+..+++++++....    -.++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44568888999999999999999999999999999999999999999999999999999986554    34788899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Q 003991          460 AALGESVEAIQDLSKALEFEPN  481 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~  481 (781)
                      ...|+-+.|..-|+.+-++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999998887653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.21  E-value=3e-06  Score=67.04  Aligned_cols=62  Identities=26%  Similarity=0.345  Sum_probs=53.9

Q ss_pred             hhhhhHHHHHHhhhCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (781)
Q Consensus        70 ~~~~~rA~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  131 (781)
                      ..+.++|.+|..+|+|++|+..+++++++.       |..+..+..+|.++..+|++++|+..|+++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            458899999999999999999999999763       33466999999999999999999999999954

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.18  E-value=0.0067  Score=63.20  Aligned_cols=71  Identities=10%  Similarity=0.053  Sum_probs=58.1

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      .-++.+|.+.++|+.+...+..+ .+++....|++.+...|..+.+|.......+...+|+.....|.+++.
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34667888888888888777666 888888888888888888888888888888888888888888888764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.10  E-value=3.3e-06  Score=53.66  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHcCCHHHHH
Q 003991           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (781)
Q Consensus        92 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  123 (781)
                      |++||+++|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.07  E-value=3.2e-05  Score=68.84  Aligned_cols=54  Identities=19%  Similarity=0.374  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHhhccCcHH
Q 003991          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSME  654 (781)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~  654 (781)
                      +++|+.-|++++.++|+...+++.+|.+|..++.           |++|..+|++|...+|++..
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            4556666666777777777777777777665543           78899999999999999854

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=0.00032  Score=68.13  Aligned_cols=156  Identities=13%  Similarity=0.036  Sum_probs=79.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHCCCH
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRF---SKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~g~~  601 (781)
                      +....|++.+|...+.+.++..|.+.-++..--.+++..|+...-...+++++.. +++.   ..+.-.++..+...|-|
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3444555555555555555555555555555555555555555555555555543 3332   22333444455555555


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC  681 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  681 (781)
                      ++|.+..+++++++|.+..+...++.++...|++.++.++..+--..-   ...|+..+--|..-+..+..-+.++.|+.
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W---r~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW---RQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch---hhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            555555555555555555555555555555555555555544432211   12233334444444555545555555555


Q ss_pred             HHh
Q 003991          682 WFD  684 (781)
Q Consensus       682 ~~~  684 (781)
                      .|+
T Consensus       269 IyD  271 (491)
T KOG2610|consen  269 IYD  271 (491)
T ss_pred             HHH
Confidence            553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=1.5e-05  Score=81.62  Aligned_cols=115  Identities=21%  Similarity=0.056  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhh---hCHHHHHHHHHHHHhcCCCchh
Q 003991           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ  104 (781)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~---~~~~~A~~~~~~al~~~p~~~~  104 (781)
                      ..++.+..+..+..+++.|-.+.+..||..|++++... ....+|.|||.++++.   |+--.|+.+|..|+.++|...+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k  446 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK  446 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence            45667777888899999999999999999999999998 5566689999999986   5888899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 003991          105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (781)
Q Consensus       105 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  143 (781)
                      ||++++.++..++++.+|+.+...+....|..-......
T Consensus       447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v  485 (758)
T KOG1310|consen  447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV  485 (758)
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence            999999999999999999987665544455444444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.00054  Score=66.62  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF  494 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~  494 (781)
                      ...+.+....|++.+|....++.++..|.+.-++..--..+...|+...-...+++++.. +++.   ..+.-.++..+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            334555666778888888888888888887777777777777788888777788877766 5544   344455666677


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A  570 (781)
                      ..|-|++|.+..++++++++.+.-+...++.++...|++.++.++..+.-..-...    ..-|-..+.+++..+.|+.|
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            77888888888888888888887777788888888888888887776643322111    12334556677777888888


Q ss_pred             HHHHHHHH
Q 003991          571 LECLQQVL  578 (781)
Q Consensus       571 ~~~~~~al  578 (781)
                      +.+|.+-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            88887654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0038  Score=58.31  Aligned_cols=199  Identities=16%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (781)
                      +..+..-+..+....+|++|..++.++.+-..++.      .++-..|........+.++..+++++...          
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l----------  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL----------  100 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------
Confidence            44555566677777888888888888876544332      23334445555556666666666666543          


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 003991          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALS  528 (781)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~  528 (781)
                          |...|..+.|-..++++-+               .....++++|+.+|++++.+...+      .+.+...++++.
T Consensus       101 ----Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV  161 (308)
T KOG1585|consen  101 ----YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV  161 (308)
T ss_pred             ----HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence                3333333333333333222               123334445555555544432221      123334455555


Q ss_pred             HcCCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHC
Q 003991          529 SIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID----KRFSKAYHLRGLLLHGL  598 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~  598 (781)
                      +...+++|-..+.+-...      .++....+.....+|....+|..|..+++...++.    |++..+..+|-..| ..
T Consensus       162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~  240 (308)
T KOG1585|consen  162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE  240 (308)
T ss_pred             hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence            555555555554443221      12223334444444555556666666666544331    23333444433332 34


Q ss_pred             CCHHHHHHHHH
Q 003991          599 GQHKKAIKDLS  609 (781)
Q Consensus       599 g~~~~A~~~~~  609 (781)
                      |+.++.-..+.
T Consensus       241 gD~E~~~kvl~  251 (308)
T KOG1585|consen  241 GDIEEIKKVLS  251 (308)
T ss_pred             CCHHHHHHHHc
Confidence            55555544443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.98  E-value=0.027  Score=60.06  Aligned_cols=116  Identities=8%  Similarity=0.043  Sum_probs=87.0

Q ss_pred             hhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHH
Q 003991          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAI  442 (781)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al  442 (781)
                      ......+..++...|..-..|-..|..-++.|..+.+.+.|++.+..-|.....|... +.+-...|+.+.-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            4444456677788888888999999999999999999999999999888777777544 334445678888888888888


Q ss_pred             HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991          443 QSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (781)
Q Consensus       443 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  479 (781)
                      .....+   ...|-..-..-..++++..-...|++.++..
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP  181 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP  181 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence            765543   3455555555567788888888888888753

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.96  E-value=0.001  Score=68.76  Aligned_cols=192  Identities=17%  Similarity=0.122  Sum_probs=117.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (781)
                      ..+..-..+..+...-++...+|++++|+.+++|..++.-  ...-..+|..+|+++++.....    +.........|.
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~  245 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGH  245 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccc
Confidence            3444455667788888888888888888888888776642  2334678888888887654321    111111111111


Q ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          499 FNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       499 ~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      .-+       .+...+.+  ..+...+|.+..++|+.++|++.++..++..|.  +..+..++..++...+.|.++...+
T Consensus       246 ~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  246 FWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            111       11111111  334566888888888888888888888877664  4567788888888888888888888


Q ss_pred             HHHHhh-CCCCHHHHHHHHHHHHH-CCC---------------HHHHHHHHHHhhccCCCCHHHHH
Q 003991          575 QQVLYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGLGIDPSNIECLY  623 (781)
Q Consensus       575 ~~al~~-~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~  623 (781)
                      .+.-++ -|..+...+..+.+-.+ .++               -..|++.+.+|++.+|.-+..+.
T Consensus       319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            775433 24445544444443322 111               13466778888888887665444

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.0023  Score=59.71  Aligned_cols=200  Identities=15%  Similarity=0.062  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG  490 (781)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (781)
                      .+..-+.+|....+|++|..++.++.+-..++.      .++-..+.+...+..+.++..+++++              .
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA--------------s   98 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA--------------S   98 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------H
Confidence            344456677777888888888888775433331      12223333333344444444444443              2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHc
Q 003991          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDL  564 (781)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~  564 (781)
                      ..|...|..+.|-..++++-+               ....-++++|+.+|++++.+....      .+.+-..++++.+.
T Consensus        99 ~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            345566666666666665543               334567888899998888764433      45566778899999


Q ss_pred             CCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHhCC
Q 003991          565 ANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAIGE  634 (781)
Q Consensus       565 g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~  634 (781)
                      ..+.+|-..+.+-...      .++....+.....++....+|..|..+++...++    .|++.....+|-..| ..|+
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD  242 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD  242 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence            9999998888775432      2333455666667777778999999999997765    345566666666655 5688


Q ss_pred             HHHHHHHHHHHH
Q 003991          635 YREAIKDYDAAL  646 (781)
Q Consensus       635 ~~~A~~~~~~al  646 (781)
                      .++..+.+.--.
T Consensus       243 ~E~~~kvl~sp~  254 (308)
T KOG1585|consen  243 IEEIKKVLSSPT  254 (308)
T ss_pred             HHHHHHHHcChH
Confidence            888877765443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.94  E-value=0.0004  Score=70.07  Aligned_cols=136  Identities=10%  Similarity=-0.054  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      +|..+.....+.+..+.|...|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566667777777778888889998886666677888888888776 4555569999999999889888888888888888


Q ss_pred             CCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          598 LGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .|+.+.|..+|++++..-|...   .+|......-...|+.+...+..+++.+..|++..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999988766644   57888888888899999999999999999888554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.94  E-value=1.3e-05  Score=63.38  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (781)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  689 (781)
                      +-..++.++|.+|..+|++++|+.+|++++++.-...+.....+.++..+|.++...|++++|+.+++++.++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3457889999999999999999999999998843334344556889999999999999999999999988764

...

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.94  E-value=0.0029  Score=65.62  Aligned_cols=190  Identities=13%  Similarity=0.027  Sum_probs=112.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      ......+..+...-++.-.+|++++|+.+.+|..+|.-.  ..-..+|..+|+++++......    .........|..-
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~  247 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence            344467789999999999999999999999999887642  3346788888888876432211    1111111111111


Q ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          467 EAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       467 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      +       .....+.  ...+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++..++.|.++...+.+
T Consensus       248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            1       1111111  1334556777777777777777777777766654  345666777777777777777776666


Q ss_pred             HHhh-CcccHHHHHHHHHHHHH-------------cC---CHHHHHHHHHHHHhhCCCCHHHHH
Q 003991          543 AIQL-DRNFLEAWGHLTQFYQD-------------LA---NSEKALECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       543 al~~-~~~~~~~~~~la~~~~~-------------~g---~~~~A~~~~~~al~~~~~~~~~~~  589 (781)
                      .-+. -|+.....+.-+.+..+             .|   .-..|++.+.++++.+|.-+..+.
T Consensus       321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            4322 23344433333333221             11   013467788888888887665443

The molecular function of this protein is uncertain.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.0022  Score=60.45  Aligned_cols=164  Identities=16%  Similarity=0.219  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Q 003991          467 EAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK-KAEEAHLKAI  544 (781)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al  544 (781)
                      .|+..-..++.++|.+..+|...-.++..++ +..+-++++.+.++.+|.+..+|...-.+....|++. .-+++...++
T Consensus        61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l  140 (318)
T KOG0530|consen   61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML  140 (318)
T ss_pred             HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence            3344444444444444444433333333322 3344444444444445555444444444444444444 4444444444


Q ss_pred             hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----CHHHHHHHHHHhhccCCCC
Q 003991          545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG-----QHKKAIKDLSSGLGIDPSN  618 (781)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~  618 (781)
                      ..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+....+...|++
T Consensus       141 ~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N  220 (318)
T KOG0530|consen  141 DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN  220 (318)
T ss_pred             hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC
Confidence            44444444444444444444445555554444444443333333322111111 00     1222334444445555555


Q ss_pred             HHHHHHHHHHHH
Q 003991          619 IECLYLRASCYH  630 (781)
Q Consensus       619 ~~~~~~la~~~~  630 (781)
                      ..+|..|.-++.
T Consensus       221 eSaWnYL~G~l~  232 (318)
T KOG0530|consen  221 ESAWNYLKGLLE  232 (318)
T ss_pred             ccHHHHHHHHHH
Confidence            555555554444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.87  E-value=0.045  Score=56.14  Aligned_cols=95  Identities=8%  Similarity=-0.073  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--H--H---------
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--G--E---------  450 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--~---------  450 (781)
                      +..+-...+-..+.+.-...+-..-+..|..+......|...++.+.+.+|+..+..-...-...  +  +         
T Consensus        48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d  127 (549)
T PF07079_consen   48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD  127 (549)
T ss_pred             HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence            33344444455566655555555556677777777888999999999999999887766542222  1  1         


Q ss_pred             H--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003991          451 A--WKRRGQARAALGESVEAIQDLSKALEF  478 (781)
Q Consensus       451 ~--~~~la~~~~~~g~~~~A~~~~~~al~~  478 (781)
                      .  -...+.++...|.+.++...+++.+..
T Consensus       128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  128 FFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            1  123577888999999999998887754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00015  Score=67.11  Aligned_cols=96  Identities=20%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      -+-..|..++....|..|+..|.+++..+|..+..+.+.+.++++..+++.+.....+++++.|+....++.+|.+....
T Consensus        12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s   91 (284)
T KOG4642|consen   12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS   91 (284)
T ss_pred             HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence            34456777888889999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 003991          463 GESVEAIQDLSKALEF  478 (781)
Q Consensus       463 g~~~~A~~~~~~al~~  478 (781)
                      ..+++|+..+.++..+
T Consensus        92 ~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   92 KGYDEAIKVLQRAYSL  107 (284)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            9999999999988665

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.86  E-value=0.00076  Score=70.35  Aligned_cols=111  Identities=15%  Similarity=0.011  Sum_probs=93.8

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (781)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (781)
                      ...+..+.+......-+..+..+|+..+|..++..++-..|...  .++..+|.++.+.|...+|--.+..|+...|.-.
T Consensus       204 ~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t  283 (886)
T KOG4507|consen  204 EGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT  283 (886)
T ss_pred             HhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence            34555666666666666677779999999999999998777644  4788999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (781)
                      .-++.++.++...+.+.....+|..+.+..|..
T Consensus       284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             ccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            778999999999999999999999999988865

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.85  E-value=0.00055  Score=69.07  Aligned_cols=133  Identities=11%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344555555555556666666666664444445566666666444 3444446666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (781)
                      .|+.+.|...|++++..-+...   .+|......-...|+.+...++.+++.+..|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            6666666666666666544433   45666666666667777777777666666665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.82  E-value=0.011  Score=62.52  Aligned_cols=116  Identities=16%  Similarity=0.160  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC---------
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKALECLQQVLYI-DK---------  582 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~---------  582 (781)
                      ...+...+.+....|.++.|...+.++....+.    .+.+.+..+.++...|+..+|+..++..+.. ..         
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            345555555566666666666655555543311    2445555555555566666666555555441 00         


Q ss_pred             ------------------------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          583 ------------------------RFSKAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       583 ------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                                              ....++..+|......      +..++++..|..+++.+|....+|+.+|..+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                                    0133556666666666      7788888888888888888888888877776544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.81  E-value=5.1e-05  Score=51.88  Aligned_cols=41  Identities=24%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      .++..+|.+|..+|++++|++.|+++++.+|+++++|..++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            45667777777777777777777777777777776655443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.81  E-value=3.6e-05  Score=52.65  Aligned_cols=43  Identities=23%  Similarity=0.135  Sum_probs=35.9

Q ss_pred             hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 003991           69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (781)
Q Consensus        69 ~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~  111 (781)
                      |..+..+|.+|.++|++++|++.++++++.+|+++.++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3457788888888888888888888888888888888888875

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.79  E-value=0.044  Score=59.12  Aligned_cols=262  Identities=18%  Similarity=0.095  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQ------ILKE----DPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQS-----  444 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~------~l~~----~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~-----  444 (781)
                      .+.+-.-|..+-...++++|+++|++      ++++    .|.... .--.-|.-+...|+++.|+..|-.+--+     
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie  740 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE  740 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            34455556677777888888888765      2332    232211 1123355566778888887776543110     


Q ss_pred             -------CC-------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003991          445 -------NP-------------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (781)
Q Consensus       445 -------~p-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (781)
                             -|             .....|-.++.-|...|+|+-|.+.|.++-        .......+|.+.|+|..|.+
T Consensus       741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHH
Confidence                   00             011234456677777788888887776542        22333455667777777777


Q ss_pred             HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------Hh----hCccc-HHHHHHHHH
Q 003991          505 DLSACVKLDKEN-KSAYTYLGLALSSIGEYKKA-------------EEAHLKA------IQ----LDRNF-LEAWGHLTQ  559 (781)
Q Consensus       505 ~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~~~~-~~~~~~la~  559 (781)
                      .-.++.  .|.. ...|...+.-+...|+|.+|             +..|.+.      +.    ..|+. ......+|.
T Consensus       813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~  890 (1636)
T KOG3616|consen  813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK  890 (1636)
T ss_pred             HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence            666653  2332 23444455555555555444             4444332      11    11221 345556677


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh------CC-----------------CCHH--HHHH---------HHHHHHHCCCHHHHH
Q 003991          560 FYQDLANSEKALECLQQVLYI------DK-----------------RFSK--AYHL---------RGLLLHGLGQHKKAI  605 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~------~~-----------------~~~~--~~~~---------la~~~~~~g~~~~A~  605 (781)
                      -+...|+...|...|-++-..      ..                 .+..  +.+.         -..++-+.|-.+.|+
T Consensus       891 e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~i  970 (1636)
T KOG3616|consen  891 ELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAI  970 (1636)
T ss_pred             HHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHh
Confidence            777777777777666554211      00                 0100  0000         011223344444444


Q ss_pred             HHH------HHhhc-----cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          606 KDL------SSGLG-----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       606 ~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      ...      +-+..     .....+.++..++..+...|++++|-++|-.+++++.-+
T Consensus       971 d~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  971 DFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             hhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence            321      11111     122346788899999999999999999999999987544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.76  E-value=0.017  Score=61.04  Aligned_cols=146  Identities=14%  Similarity=0.145  Sum_probs=112.8

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-C--C---
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D--P---  616 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~--p---  616 (781)
                      .......|...+.+..+.|.++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+.. .  +   
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            445577899999999999999999999999987652    25778888999999999999999999888771 0  0   


Q ss_pred             ----------------------C------CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          617 ----------------------S------NIECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       617 ----------------------~------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                                            .      ...++..+|......      +..+++...|.++++++|+...+|...+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                  0      124566677777777      888999999999999999999988888777


Q ss_pred             HHHHHHHHH----------HHhchhhHHHHHhhhcCCCcc
Q 003991          663 FYQKEIALY----------TASKINSEFCWFDIDGDIDPL  692 (781)
Q Consensus       663 ~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~p~  692 (781)
                      +...-....          ...-...|+.+|-++..+.++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            666543332          122234578888888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.74  E-value=0.061  Score=60.08  Aligned_cols=303  Identities=17%  Similarity=0.080  Sum_probs=192.4

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CcHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNP-----SAGEAW  452 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~  452 (781)
                      .-.+.+..-+..+...|...+|+...-.+  .+|... ..+-..+.-+...++..--    ...++.-|     .++...
T Consensus       345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll----~~~~~~lP~~~l~~~P~Lv  418 (894)
T COG2909         345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLL----LAWLKALPAELLASTPRLV  418 (894)
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHH----HHHHHhCCHHHHhhCchHH
Confidence            33677777788888899999998775543  233322 2222334444444444332    22333333     345566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS  518 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~  518 (781)
                      ...+.......++.+|..++.++...-+.  .       ....-..|.+....|+++.|++..+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            77788888999999999999888765443  1       3445567788889999999999999999987765     35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHH--HHHHHHHH----HhhCCCCHH
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK--ALECLQQV----LYIDKRFSK  586 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~~~~~~  586 (781)
                      ++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+...  ....+...    +...|.+..
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            66778999999999999999999988774332      2333455778888884333  33333322    222333333


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCC--H-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSN--I-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      .....+.++...-+++.+.......++.    .|..  . -.++.++.++...|+.++|...+.....+--+......+.
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            3333333333333366666655555544    2322  2 2335899999999999999999999887654442222344


Q ss_pred             HHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          660 CLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      +.++.-+.......|+...+..+..+.+
T Consensus       659 a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         659 AAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            4454444455556777777777776643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=4.6e-05  Score=48.81  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=17.8

Q ss_pred             hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCC
Q 003991           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (781)
Q Consensus        71 ~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~  101 (781)
                      .++++|.+++.+|++++|+..|++||+++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.71  E-value=0.03  Score=60.91  Aligned_cols=153  Identities=15%  Similarity=0.091  Sum_probs=115.3

Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHH--------HHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAW--------GHLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~--------~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (781)
                      -.|+-+.++..+.++.+. ++-....        +.....+.    .....+.|.+.+.......|+.....+..|+++.
T Consensus       200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            468999999999998773 2221111        11111111    2456788999999999999999999999999999


Q ss_pred             HCCCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Q 003991          597 GLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT  672 (781)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  672 (781)
                      ..|+.++|++.|++++.....    ..-.++.+|.++..+++|++|..++.+..+.+.-+      .+...|..|.++..
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM  352 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh
Confidence            999999999999998854332    23568889999999999999999999999876543      44566777777777


Q ss_pred             Hhch-------hhHHHHHhhhcC
Q 003991          673 ASKI-------NSEFCWFDIDGD  688 (781)
Q Consensus       673 ~~~~-------~~A~~~~~~~~~  688 (781)
                      .++.       ++|...|.++..
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHH
Confidence            7777       777777776644

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.70  E-value=0.013  Score=65.28  Aligned_cols=263  Identities=16%  Similarity=0.044  Sum_probs=187.3

Q ss_pred             ccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ  443 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~  443 (781)
                      .+..+...+|.+++.-     .+.+.|+.+|+.+.+.     .-.++.+.+.+|.+|....     ++..|..+|.++-.
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            3466777777777654     5899999999999771     1125667889999998853     78889999999987


Q ss_pred             hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCC
Q 003991          444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~  516 (781)
                      ..  ++.+.+.+|.++..-.   ++..|..+|..+....  +..+.+.++.+|..-    .+...|..+++++.+..  .
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~  395 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N  395 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence            64  4667788898887765   6789999999998764  678888899888753    47899999999999887  4


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcccHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHH
Q 003991          517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKA  587 (781)
Q Consensus       517 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~---~~~-~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  587 (781)
                      +.+...++..+... +.++.+.-.+....+..-..+.   ++. ........    ..+...+...+.++..  ..++.+
T Consensus       396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a  473 (552)
T KOG1550|consen  396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA  473 (552)
T ss_pred             hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence            55555555555433 7777777666655544322211   111 11111111    1245566666666543  456788


Q ss_pred             HHHHHHHHHHC----CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhccCc
Q 003991          588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI---GEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       588 ~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~  652 (781)
                      ...+|.+|..-    .+++.|...|.++....   +...+++|.++..-   .....|..+|.++.+.+...
T Consensus       474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence            88899888764    46999999999998876   88999999998641   12789999999998876543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.011  Score=55.88  Aligned_cols=164  Identities=18%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 003991          434 AISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVK  511 (781)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~a~~  511 (781)
                      |+.....++.++|.+..+|...-.++..+ .+..+-+.++.+.++-+|++..+|...-.+....|++. .-+++.+.++.
T Consensus        62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~  141 (318)
T KOG0530|consen   62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD  141 (318)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence            33334444445555544444444443332 23444455555555555555555555555555555544 45555555555


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-c-----CCHHHHHHHHHHHHhhCCCCH
Q 003991          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-L-----ANSEKALECLQQVLYIDKRFS  585 (781)
Q Consensus       512 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~-----g~~~~A~~~~~~al~~~~~~~  585 (781)
                      .+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .     -..+.-+.+..+.|...|++.
T Consensus       142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~Ne  221 (318)
T KOG0530|consen  142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNE  221 (318)
T ss_pred             ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCc
Confidence            5555555555555555555555555555555555544444444322111111 0     112233444555556666666


Q ss_pred             HHHHHHHHHHHH
Q 003991          586 KAYHLRGLLLHG  597 (781)
Q Consensus       586 ~~~~~la~~~~~  597 (781)
                      .+|..|.-++..
T Consensus       222 SaWnYL~G~l~~  233 (318)
T KOG0530|consen  222 SAWNYLKGLLEL  233 (318)
T ss_pred             cHHHHHHHHHHh
Confidence            666666555553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.68  E-value=7.3e-05  Score=76.71  Aligned_cols=111  Identities=24%  Similarity=0.326  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      ..-..|..++..+.|+.|+..|.++++++|+.+..+-..+.++...+++..|+..+.++++.+|....+|+..|.++...
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34456777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      +.+.+|+..|+....+.|+++.+...+..+-
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            9999999999999999999998877766553

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.0012  Score=61.34  Aligned_cols=105  Identities=27%  Similarity=0.358  Sum_probs=85.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--------EDPMYP----------EALIGRGTARAFQRELEAAISDFTEA  441 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a  441 (781)
                      .+..+...|..++..|+|.+|...|..++.        ..|..+          ..+.+.+.|+...|+|-++++....+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            366788899999999999999999998864        234433          45677888888888888888888888


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD  484 (781)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  484 (781)
                      +...|.+..+++..|.++...-+..+|..-|.++++++|.-..
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            8888888888888888888888888888888888888875533

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.61  E-value=0.026  Score=57.96  Aligned_cols=81  Identities=10%  Similarity=0.003  Sum_probs=40.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCcHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-AIQSNPSAGEA  451 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~  451 (781)
                      +++....+-..|....+|+.-+++.+.+-..    -++.+.+.+..|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3444444444555555555555555554333    23344445555555555   5555555555555 22334444555


Q ss_pred             HHHHHHHHH
Q 003991          452 WKRRGQARA  460 (781)
Q Consensus       452 ~~~la~~~~  460 (781)
                      +..+|.+|.
T Consensus       220 ~gL~GRIyK  228 (374)
T PF13281_consen  220 LGLLGRIYK  228 (374)
T ss_pred             HHHHHHHHH
Confidence            555555553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.59  E-value=0.0086  Score=61.43  Aligned_cols=191  Identities=15%  Similarity=0.045  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADIL  486 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~  486 (781)
                      +++...+-.+|....+|+.-+...+..-.+    .++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            344555555666666666666666655544    33445555556666665   5666666666666 333444556666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Q 003991          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (781)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  566 (781)
                      ..+|.+|-..            .++....+.             ...++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus       221 gL~GRIyKD~------------~~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  221 GLLGRIYKDL------------FLESNFTDR-------------ESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHH------------HHHcCccch-------------HHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            6666655332            000011111             11566777777777666433 223344444444444


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      ..+...-+++..          ..++..+.+.|.            .-.-.+.+..-.++.+..-.|++++|.+.+++++
T Consensus       275 ~~~~~~el~~i~----------~~l~~llg~kg~------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  275 DFETSEELRKIG----------VKLSSLLGRKGS------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             cccchHHHHHHH----------HHHHHHHHhhcc------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            222222111111          111111111111            1112234455556666666777777777777777


Q ss_pred             hhccCcH
Q 003991          647 DLELDSM  653 (781)
Q Consensus       647 ~~~p~~~  653 (781)
                      .+.|...
T Consensus       333 ~l~~~~W  339 (374)
T PF13281_consen  333 KLKPPAW  339 (374)
T ss_pred             hcCCcch
Confidence            7765543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.58  E-value=6.1e-05  Score=47.84  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (781)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45566666666666666666666666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.58  E-value=0.00015  Score=46.36  Aligned_cols=34  Identities=35%  Similarity=0.686  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3567888888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.54  E-value=0.00021  Score=45.72  Aligned_cols=34  Identities=32%  Similarity=0.644  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      +.+++.+|.++..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567788888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0058  Score=59.29  Aligned_cols=151  Identities=17%  Similarity=0.146  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQA  458 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~  458 (781)
                      ..+.-+..+......|++.+|...|..++...|++..+...++.++...|+.+.|...+...-........ .+......
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            45566777888999999999999999999999999999999999999999999999887764332222211 11111122


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG  531 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g  531 (781)
                      +.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|++.+-..++.+..  +..+...+-.++...|
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            2232222222 2344556678888888888888888888888888888777776533  2344444444444444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.089  Score=59.16  Aligned_cols=231  Identities=15%  Similarity=0.116  Sum_probs=123.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  467 (781)
                      |......+-|++|..+|.+.-    -+..+..   ......+..+.|.++.+++     +.+.+|..+|....+.|...+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhc----ccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence            455566666667766665421    1111111   1112234445555544443     345666677777666777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----------------------------CCHHH
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK----------------------------ENKSA  519 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p----------------------------~~~~~  519 (781)
                      |++.|-++     +++..+.....+..+.|.|++-+.++..+-+...                            +.+. 
T Consensus      1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~- 1196 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVAN- 1196 (1666)
T ss_pred             HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchh-
Confidence            76666554     3555666666666666666666666665544321                            1111 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------------
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-----------------  582 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----------------  582 (781)
                      ....|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|..|...-+++-....                 
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence            12234444444555544444432        34456667777777777777776666532100                 


Q ss_pred             --------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          583 --------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       583 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                              -+.+-+-.+...|...|-+++-+..++.++-+..-+...+..+|.+|.+- ++++-.++++-.
T Consensus      1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence                    01222344555566666777777777766666655556666666666543 344444444433

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.45  E-value=0.082  Score=59.05  Aligned_cols=244  Identities=18%  Similarity=0.053  Sum_probs=170.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 003991          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG--  463 (781)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--  463 (781)
                      ....|..+++.+.+.  .+..+.+.+|.+|..-     .|.+.|+.+|..+...     .-..+.+.+.+|.+|..-.  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888877554  4677888888888765     6899999999999771     1124557788999998843  


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 003991          464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY  533 (781)
Q Consensus       464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~  533 (781)
                         ++..|+.+|.++....  ++.+.+.+|.++..-.   ++..|.++|..|...  .+..+.+.++.+|..    ..+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               6788999999998875  5678888998888765   678999999998765  467788888888875    3578


Q ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH----CCCHHHH
Q 003991          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHG----LGQHKKA  604 (781)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~----~g~~~~A  604 (781)
                      ..|..++.++.+..  .+.+...++..+... +.+..+...+.......-..+    ............    ..+...+
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~  458 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA  458 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence            99999999999887  455555555554433 666666665555443322111    111111111111    1245666


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhc
Q 003991          605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLE  649 (781)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~  649 (781)
                      ...+.++..  ..++.+...+|.+|..-    .+++.|...|.++....
T Consensus       459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~  505 (552)
T KOG1550|consen  459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG  505 (552)
T ss_pred             HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence            666666644  45678888899988765    35899999999998776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.43  E-value=0.061  Score=58.58  Aligned_cols=177  Identities=15%  Similarity=0.023  Sum_probs=127.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHH
Q 003991          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEE  538 (781)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~  538 (781)
                      -.|.-++.+-|   .....+..+.--.|+-+.++..+.++.+...-. +-+      |+.....+.    .....+.|.+
T Consensus       178 G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~  254 (468)
T PF10300_consen  178 GLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE  254 (468)
T ss_pred             HHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence            34555566555   233334444455688899999998887632211 111      111111111    2456788999


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      .+.......|+..-..+..|+++...|+.++|+..|++++......    .-.++.+|.++.-+.+|++|..+|.+..+.
T Consensus       255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999988533322    345788999999999999999999999987


Q ss_pred             CCCC-HHHHHHHHHHHHHhCCH-------HHHHHHHHHHHhhc
Q 003991          615 DPSN-IECLYLRASCYHAIGEY-------REAIKDYDAALDLE  649 (781)
Q Consensus       615 ~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  649 (781)
                      +.-. ....+..|.|+...|+.       ++|..+|.++-.+.
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            6553 45567788999999999       77777777776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.40  E-value=0.00036  Score=44.54  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=16.5

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 003991          104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~  134 (781)
                      ++++.+|.++..+|++++|+.+|++++.+.|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3455555555555555555555555544444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.38  E-value=0.11  Score=52.37  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=29.9

Q ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          649 ELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       649 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      .|-.+++....-...++.|...|..++|..|..||+-+.
T Consensus       235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            344555555555677888999999999999999997554

It is also involved in sporulation [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.34  E-value=0.46  Score=54.09  Aligned_cols=286  Identities=19%  Similarity=0.135  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCHH
Q 003991          398 ASAISIFDQILKEDPM----YPEALIGRGTARA-FQRELEAAISDFTEAIQSNPS--AG----EAWKRRGQARAALGESV  466 (781)
Q Consensus       398 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~  466 (781)
                      ..|+.+++.+++..+-    .+.+.+.+|.+++ ...+++.|..++++++.+...  ..    .+.+.++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            3456666666642211    2345666777666 567777777777777665532  22    23445566666666555


Q ss_pred             HHHHHHHHHHHhCCCC----HHHHHH-H-HHHHHhcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 003991          467 EAIQDLSKALEFEPNS----ADILHE-R-GIVNFKFKDFNAAVEDLSACVKLD--KENKSA----YTYLGLALSSIGEYK  534 (781)
Q Consensus       467 ~A~~~~~~al~~~p~~----~~~~~~-l-a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~g~~~  534 (781)
                       |...+++.++.....    ....+. + .......+++..|++.++......  ..++.+    ....+.+....+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             777777776654431    111111 1 222222367777777777766654  233322    222345555566666


Q ss_pred             HHHHHHHHHHhhCc----------ccHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---hh---CC---C----------
Q 003991          535 KAEEAHLKAIQLDR----------NFLEAWGHLTQ--FYQDLANSEKALECLQQVL---YI---DK---R----------  583 (781)
Q Consensus       535 ~A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~~---~----------  583 (781)
                      ++++..+++.....          ....+|..+-.  ++...|+++.+...+++.-   ..   .+   .          
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~  276 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN  276 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence            66666666533211          11333333333  3345566555555444331   11   11   0          


Q ss_pred             -----------C------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCC---------------
Q 003991          584 -----------F------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSN---------------  618 (781)
Q Consensus       584 -----------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~---------------  618 (781)
                                 .            .-+|..-|......+..+.|.+++.++++.-       +..               
T Consensus       277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~  356 (608)
T PF10345_consen  277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL  356 (608)
T ss_pred             cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence                       0            0123333555666676667777777776431       110               


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHHHHHHhchhhHHHHHh
Q 003991          619 ----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME--KFVLQCLAFYQKEIALYTASKINSEFCWFD  684 (781)
Q Consensus       619 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  684 (781)
                          ..+.+..+.+..-.|++..|....+.+.......+.  .-......+|-.|..+...|+++.|...|.
T Consensus       357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence                124556777888899999999999988876543322  123345678888888889999999999997

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.013  Score=57.03  Aligned_cols=149  Identities=18%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IV  492 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~  492 (781)
                      .+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ......+  ..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence            34456667778889999999999999999999999999999999999999999988876542222211 1111111  22


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcC
Q 003991          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA  565 (781)
Q Consensus       493 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g  565 (781)
                      +.......+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+...  ..+...+-.++...|
T Consensus       213 l~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            222222221 123455566789999999999999999999999998888888765432  344444444444444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.30  E-value=0.48  Score=53.33  Aligned_cols=234  Identities=15%  Similarity=0.018  Sum_probs=156.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-  448 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  448 (781)
                      .+|...+..|.......++.+|..++.++...-+.         .....-..|.+....|+++.|++..+.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            35677888899999999999999999988765433         12445667888899999999999999999987765 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHHH----h
Q 003991          449 ----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDF--NAAVEDLSACVK----L  512 (781)
Q Consensus       449 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~--~~A~~~~~~a~~----~  512 (781)
                          ..++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+.  .+....+...-.    .
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q  572 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ  572 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence                3467788899999999999999999988773322      23444557778888833  333333332222    2


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccc--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003991          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-  584 (781)
Q Consensus       513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  584 (781)
                      .|.........+.++...-+++.+.......++..    |..  . -+.+.++.+++..|+.++|...+........+. 
T Consensus       573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence            33333333333444433333666666655555442    222  1 233589999999999999999998876543222 


Q ss_pred             H------HHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          585 S------KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       585 ~------~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      +      .++.........+|+.+.|.....+..
T Consensus       653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence            1      112222333456899999988887743

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.025  Score=51.44  Aligned_cols=119  Identities=22%  Similarity=0.085  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Q 003991          535 KAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDL  608 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~  608 (781)
                      +.....++....++...   .+-..++..+...|++++|+..++.++....+.   ..+-.+++.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444555555554442   344578888999999999999999988654332   345678999999999999999988


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .......- .+......|.++...|+.++|+..|+++++..++.+.
T Consensus       150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            75433211 2345677899999999999999999999999866543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.29  E-value=0.37  Score=51.79  Aligned_cols=290  Identities=12%  Similarity=-0.044  Sum_probs=176.6

Q ss_pred             HHHHHhhccCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          368 FCVTRISKSKSISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      ..+++.+..-|.+.+.|...-.... ..|+-..-...|+.|......+   ...|-..-..-..++++..-...|++.++
T Consensus       100 ~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  100 KVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE  179 (577)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            3456666777888888876654443 4678888888899988765443   34455555555778899999999999887


Q ss_pred             hCCCcHHHHH----------------------HHHHHHHH------------------------cCCHHHHHHHHHHHHH
Q 003991          444 SNPSAGEAWK----------------------RRGQARAA------------------------LGESVEAIQDLSKALE  477 (781)
Q Consensus       444 ~~p~~~~~~~----------------------~la~~~~~------------------------~g~~~~A~~~~~~al~  477 (781)
                      .--.....++                      .+..--..                        .+.++++.....+...
T Consensus       180 iP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~  259 (577)
T KOG1258|consen  180 IPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS  259 (577)
T ss_pred             hhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH
Confidence            4211111100                      00000000                        0111222211111111


Q ss_pred             h-----------------------------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          478 F-----------------------------EPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       478 ~-----------------------------~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                      +                             .|-   ....|......-...|+++...-.|++++--.......|...+.
T Consensus       260 ~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~  339 (577)
T KOG1258|consen  260 IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYAR  339 (577)
T ss_pred             HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence            1                             111   12345555555666777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (781)
                      .....|+.+-|...+..+.+.. |..+.....-+.+-...|++..|...+++.....|+...+-...+......|+.+.+
T Consensus       340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~  419 (577)
T KOG1258|consen  340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA  419 (577)
T ss_pred             HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence            7777788777777777766653 555666667777777778888888888888777777777766667777777777777


Q ss_pred             HH---HHHHhhccCCC---CHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          605 IK---DLSSGLGIDPS---NIECLYLRASCY-HAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       605 ~~---~~~~al~~~p~---~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      ..   .+.....-..+   ....+...+... .-.++.+.|...+.++++..|++...+.
T Consensus       420 ~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~  479 (577)
T KOG1258|consen  420 NYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL  479 (577)
T ss_pred             hHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence            63   33222221111   123344444433 3456778888888888888888766443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.26  E-value=0.011  Score=62.09  Aligned_cols=117  Identities=12%  Similarity=-0.030  Sum_probs=96.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991          402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--EAWKRRGQARAALGESVEAIQDLSKALEFE  479 (781)
Q Consensus       402 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~  479 (781)
                      .....+++..|.+...+..-+..+..+|+..+|..++..++-..|...  .++..+|.++.+.|...+|--.+..|+...
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            344556677776655544444455568999999999999999877653  377889999999999999999999999888


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (781)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~  518 (781)
                      |....-++.++.++...+.+......|..+.+..|....
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            877777999999999999999999999999998887543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.25  E-value=0.58  Score=53.26  Aligned_cols=274  Identities=12%  Similarity=0.051  Sum_probs=178.3

Q ss_pred             HHHHhhccCCc----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCHHHHHHH
Q 003991          369 CVTRISKSKSI----SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--YP----EALIGRGTARAFQRELEAAISD  437 (781)
Q Consensus       369 ~~~~~~~~~~~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~  437 (781)
                      |+..+.+..+.    .+...+.+|.+++ ...+++.|..++++++.....  ..    .+.+.++.++.+.+... |...
T Consensus        43 CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~  121 (608)
T PF10345_consen   43 CLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKN  121 (608)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHH
Confidence            55555533332    3567789999888 688999999999999876533  22    34567788888888777 9999


Q ss_pred             HHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHH----HHHHHHHHHHhcCCHHHHHHH
Q 003991          438 FTEAIQSNPS---A-GEAWKRR--GQARAALGESVEAIQDLSKALEFE--PNSAD----ILHERGIVNFKFKDFNAAVED  505 (781)
Q Consensus       438 ~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~  505 (781)
                      +++.++....   . ....+.+  .......+++..|+..++......  +.++.    +....+.+....+..+++++.
T Consensus       122 l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~  201 (608)
T PF10345_consen  122 LDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL  201 (608)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            9999986544   2 2222222  223333479999999999998876  34433    233345666777878888888


Q ss_pred             HHHHHHhCC------C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---Cc---c---------------
Q 003991          506 LSACVKLDK------E----NKSAYTYLGL--ALSSIGEYKKAEEAHLKA---IQL---DR---N---------------  549 (781)
Q Consensus       506 ~~~a~~~~p------~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~~---~---------------  549 (781)
                      ++++.....      .    ...++..+-.  ++...|+++.+...+++.   +..   .+   .               
T Consensus       202 l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~  281 (608)
T PF10345_consen  202 LQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS  281 (608)
T ss_pred             HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence            888754321      1    1234443333  445567766666554433   211   11   0               


Q ss_pred             ------c------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CC---C----------------H
Q 003991          550 ------F------------LEAWGHLTQFYQDLANSEKALECLQQVLYID-------KR---F----------------S  585 (781)
Q Consensus       550 ------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~---~----------------~  585 (781)
                            .            .-+|..-|......+..++|.++++++++.-       +.   .                .
T Consensus       282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~  361 (608)
T PF10345_consen  282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC  361 (608)
T ss_pred             ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence                  0            1122333455566677778888888876431       10   0                1


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAIKDYD  643 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~  643 (781)
                      ...+..+.+..-.+++..|......+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            124566777888999999999888776542   22      36788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.0045  Score=56.07  Aligned_cols=91  Identities=22%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCH
Q 003991           45 KLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRK  119 (781)
Q Consensus        45 ~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~  119 (781)
                      .++..|++++|+..++.++....+..+    -.+.|.+.+++|.+++|++.+...-.  +++ ...-.++|.+++..|+-
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k  175 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK  175 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch
Confidence            468999999999999999987733333    55889999999999999998877543  333 33466789999999999


Q ss_pred             HHHHHHHHHHHhhccCCh
Q 003991          120 EEALSVWEKGYEHALHQS  137 (781)
Q Consensus       120 ~~A~~~~~~al~~~~~~~  137 (781)
                      ++|+..|+++++..++++
T Consensus       176 ~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         176 QEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHccCChH
Confidence            999999999998774444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.21  E-value=0.31  Score=49.26  Aligned_cols=53  Identities=13%  Similarity=0.126  Sum_probs=31.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Q 003991          392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQS  444 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  444 (781)
                      ..+|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            45677777777777765433    221    134455566666666 666666666666654

It is also involved in sporulation [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.18  E-value=0.13  Score=54.08  Aligned_cols=47  Identities=13%  Similarity=0.015  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991           84 LHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (781)
Q Consensus        84 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  130 (781)
                      -++++..++++-+...|..+.+|..-...-+.-.+|+.-.+.|.+||
T Consensus        34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555553

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0062  Score=59.59  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (781)
                      -+..-|+-|++.++|..|+..|.+.+...-.+    ...|.+.|.+....|+|..|+....+++..+|.+..+++.=|.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34445666666677777777777766553322    34566667777777777777777777777777777777777777


Q ss_pred             HHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          629 YHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      +..+.++.+|..+.+..+.++.+..
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            7777777777766666666554433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.11  E-value=0.17  Score=51.75  Aligned_cols=190  Identities=20%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cC
Q 003991          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK  497 (781)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~  497 (781)
                      ...+++..|...+..+-..  ........++.+|..-    .+..+|..+|..+..  ...+...+.+|.+|..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCccc
Confidence            3456677777777766552  2224555555555442    345556666663332  2345555666666555    23


Q ss_pred             CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      +..+|..+|.++....... ..+...++..+..-. ...+.                          ..+...|...|.+
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~  180 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRK  180 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHH
Confidence            5555666665555543222 122344444443321 00000                          0012356666666


Q ss_pred             HHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---------------CHHH
Q 003991          577 VLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYRE  637 (781)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~  637 (781)
                      +-...  ++.+...+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...
T Consensus       181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~  255 (292)
T COG0790         181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ  255 (292)
T ss_pred             HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence            55443  56677777766644    3367777777777777655  66677777 555555               5666


Q ss_pred             HHHHHHHHHhhccC
Q 003991          638 AIKDYDAALDLELD  651 (781)
Q Consensus       638 A~~~~~~al~~~p~  651 (781)
                      |...+..+....+.
T Consensus       256 a~~~~~~~~~~~~~  269 (292)
T COG0790         256 ALEWLQKACELGFD  269 (292)
T ss_pred             HHHHHHHHHHcCCh
Confidence            66666666655443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.10  E-value=0.015  Score=52.40  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      .+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            456677888889999999999999999999999999999999999999999999999887653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.08  E-value=0.46  Score=48.94  Aligned_cols=74  Identities=8%  Similarity=0.029  Sum_probs=50.3

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (781)
                      .+..-++.+|.+.-.|+.+...+-.+|.+++-.+.|++...-.|--+.+|...-..-...+++......|.+++
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL  103 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL  103 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence            44555677888999999999999999999999999998887777666555443333333344444444444443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.079  Score=59.58  Aligned_cols=212  Identities=19%  Similarity=0.116  Sum_probs=132.3

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      +.+..|..+|.+.++.|...+|++.|-++     +++..|.....+..+.|.|++-+.++..+-+.... +.+-..+...
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence            34667777777777777777777776554     45566666667777777777777777666543221 1122233344


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      |.+.++..+-.+.+     ..|+.+ -.-..|.-++..+.|+.|.-+|..        ..-|..++..+..+|+|..|..
T Consensus      1176 yAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             HHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence            44455444433221     233332 233456666666777666666643        2345567777777777777777


Q ss_pred             HHHHHHhhCc-------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003991          539 AHLKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (781)
Q Consensus       539 ~~~~al~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (781)
                      .-++|-....                         -+.+-+-.+...|...|-+++-+..++.++.+..-+...+..+|.
T Consensus      1242 ~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1242 AARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred             HhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence            7666532210                         013344567778889999999999999999888877778888888


Q ss_pred             HHHHCCCHHHHHHHHHHh
Q 003991          594 LLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       594 ~~~~~g~~~~A~~~~~~a  611 (781)
                      +|.+- ++++-.+.++-.
T Consensus      1322 LYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             HHHhc-CHHHHHHHHHHH
Confidence            88764 566666666544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.01  E-value=0.75  Score=50.17  Aligned_cols=49  Identities=10%  Similarity=-0.075  Sum_probs=39.7

Q ss_pred             HhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991           80 SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (781)
Q Consensus        80 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  129 (781)
                      +.-|+|..|...+ +.++.-|+-...|.+++...+..|+.--|.++|...
T Consensus       455 id~~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercfaai  503 (1636)
T KOG3616|consen  455 IDDGDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI  503 (1636)
T ss_pred             cccCchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4557888887744 457888998889999999999999998888888766

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.00  E-value=0.0014  Score=41.74  Aligned_cols=32  Identities=34%  Similarity=0.682  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46788888888888888888888888888874

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.00  E-value=0.46  Score=48.56  Aligned_cols=170  Identities=20%  Similarity=0.078  Sum_probs=114.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-  461 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-  461 (781)
                      .+......+++..|...+..+-..  ..+.....++.+|...    .+..+|..+|..+.  ...++.+.+.+|.+|.. 
T Consensus        47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G  122 (292)
T COG0790          47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG  122 (292)
T ss_pred             ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence            344455778999999999988762  3347788888888764    46888999999554  45677888999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 003991          462 ---LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS-  529 (781)
Q Consensus       462 ---~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-  529 (781)
                         ..+..+|..+|.++....... ..+.+.++.+|..-.       +...|...|.++-...  ++.+...+|.+|.. 
T Consensus       123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G  200 (292)
T COG0790         123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG  200 (292)
T ss_pred             CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence               459999999999999886433 344788888877642       2225666666655544  45555556655543 


Q ss_pred             ---cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991          530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (781)
Q Consensus       530 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  565 (781)
                         ..++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence               2355666666666655544  45555555 444333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.99  E-value=0.00073  Score=66.27  Aligned_cols=95  Identities=27%  Similarity=0.384  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 003991          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (781)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (781)
                      ..+...+..|.+++|++.|..+++++|.....+...+.++..++....|+..+..++.++|+....+-..+.....+|++
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 003991          466 VEAIQDLSKALEFEP  480 (781)
Q Consensus       466 ~~A~~~~~~al~~~p  480 (781)
                      ++|...+..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999988764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.99  E-value=0.0016  Score=41.48  Aligned_cols=31  Identities=39%  Similarity=0.486  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 003991          104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~  134 (781)
                      ++|+.+|.+|..+|++++|+..|++++++.|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5778888888888888888888888865554

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.91  E-value=0.026  Score=50.77  Aligned_cols=63  Identities=25%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      ..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            356667888888999999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0018  Score=64.05  Aligned_cols=121  Identities=15%  Similarity=0.043  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------cc--h-------hhhhhHHHHHHhhhCHHHH
Q 003991           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------YE--I-------QDICNRAFCYSQLELHKHV   88 (781)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-----------~~--~-------~~~~~rA~~~~~~~~~~~A   88 (781)
                      .+..+......|..+++.|++++|..|..-|.++...-           ++  +       ..+.|.|.+-++++.+..|
T Consensus       215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a  294 (372)
T KOG0546|consen  215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA  294 (372)
T ss_pred             cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence            34444455566677889999999999999998876421           11  1       1155889999999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 003991           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (781)
Q Consensus        89 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  149 (781)
                      +..+..++..+++..++|+++|..+..+.++++|+++++.+....|..++....+......
T Consensus       295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            9999999999999999999999999999999999999999999999998877665544443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.84  E-value=0.012  Score=48.26  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcccchh-------------hhhhHHHHHHhhhCHHHHHHHHHHHHh-------cCCC
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQ-------------DICNRAFCYSQLELHKHVIRDCDKALQ-------LDPT  101 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~~~~~-------------~~~~rA~~~~~~~~~~~A~~~~~~al~-------~~p~  101 (781)
                      .+.+-+..|-|++|...|.+|++.....+             ++-.++-++..+|+|++++.-..++|-       ++.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            44556788999999999999998862221             144678889999999998887777764       3443


Q ss_pred             ----chhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          102 ----LLQAYILKGCAFSALGRKEEALSVWEKGY  130 (781)
Q Consensus       102 ----~~~a~~~lg~~~~~~g~~~~A~~~~~~al  130 (781)
                          ++.+.+.+|.++..+|+.++|++.|+++-
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                45588899999999999999999999994

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.77  E-value=0.14  Score=52.83  Aligned_cols=80  Identities=13%  Similarity=0.006  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLK  542 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~  542 (781)
                      +.-+.+|++|++.+|++..++..+-.+..+..+.++..+-+++++..+|++...|..+-.....   .-.++.....|.+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            3444555555555665555555555555555555555555666666666555555433222221   1234455555555


Q ss_pred             HHh
Q 003991          543 AIQ  545 (781)
Q Consensus       543 al~  545 (781)
                      ++.
T Consensus       128 ~l~  130 (321)
T PF08424_consen  128 CLR  130 (321)
T ss_pred             HHH
Confidence            443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.70  E-value=0.097  Score=53.99  Aligned_cols=116  Identities=9%  Similarity=0.001  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHh
Q 003991          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG---LGQHKKAIKDLSSG  611 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a  611 (781)
                      .-+.+|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|...-.....   .-.+......|.++
T Consensus        49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~  128 (321)
T PF08424_consen   49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC  128 (321)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555443332222   12344444444444


Q ss_pred             hccC-----------C-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          612 LGID-----------P-------SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       612 l~~~-----------p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      +..-           +       ....++..+...+.+.|-.+.|+..++-.++++=
T Consensus       129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            4320           0       0124566777778888999999999999888763

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.70  E-value=0.0024  Score=41.28  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 003991          105 AYILKGCAFSALGRKEEALSVWEKGYEHA  133 (781)
Q Consensus       105 a~~~lg~~~~~~g~~~~A~~~~~~al~~~  133 (781)
                      ++..+|.+|..+|++++|+..|+++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57889999999999999999999985543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.70  E-value=0.15  Score=48.59  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             cCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991          429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE  477 (781)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (781)
                      .+.++|+..|++++++.+...    .++..+..+++.++++++-+..|.+.+.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            366677777777777665543    3455556666666666666666666554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.68  E-value=0.0059  Score=43.03  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             hhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        71 ~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      +++..|.+++++|+|.+|...++.+|+.+|++..+..+...+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467888999999999999999999999999998877665543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.67  E-value=0.058  Score=56.27  Aligned_cols=174  Identities=16%  Similarity=-0.056  Sum_probs=94.7

Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (781)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (781)
                      +..+|.+.+.+..++.++..+|+...|.+.+++|+-.........+..-..-...|...   --|.  ...+.....+.+
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---L~~~--~~eNR~fflal~  107 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---LDYR--RPENRQFFLALF  107 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---cCCc--cccchHHHHHHH
Confidence            45567777777777777777777777777777665321110000000000000000000   0000  000111233455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH-HHHHHHCCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHH
Q 003991          556 HLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYHLR-GLLLHGLGQHKKAIKDLSSGLGIDP-----SNIECLYLRASC  628 (781)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~  628 (781)
                      .....+.+.|-+..|.++.+-.+.++|. ++...... -....+.++|+--+..++.......     .-|..-+..+.+
T Consensus       108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA  187 (360)
T PF04910_consen  108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA  187 (360)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence            5566677777777777777777777776 55443333 3333556666666666665443211     124566777777


Q ss_pred             HHHhCCH---------------HHHHHHHHHHHhhccCcHH
Q 003991          629 YHAIGEY---------------REAIKDYDAALDLELDSME  654 (781)
Q Consensus       629 ~~~~g~~---------------~~A~~~~~~al~~~p~~~~  654 (781)
                      +...++.               +.|...+.+|+...|.-..
T Consensus       188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            7778877               8899999999888886544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.66  E-value=0.42  Score=49.18  Aligned_cols=240  Identities=10%  Similarity=-0.054  Sum_probs=128.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (781)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  482 (781)
                      .+++++..-|-.++.|+.........++-+.|+....+++...|.   ....++.+|...++.+.-..+|+++...-   
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---  363 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---  363 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---
Confidence            345555555666666666666666666666666666666555444   44555666666666555555555554310   


Q ss_pred             HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          483 ADILHERGIVNFK---FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       483 ~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                       .--+..+..-..   .|+++..-+++-+-+.   ...-++..+-..-.+..-.+.|...|-++-+..-....++..-|.
T Consensus       364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~  439 (660)
T COG5107         364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF  439 (660)
T ss_pred             -HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence             000000000000   1222111111111110   112223223333334444566777777665543222333333332


Q ss_pred             H-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHH
Q 003991          560 F-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYR  636 (781)
Q Consensus       560 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~  636 (781)
                      + +...|++.-|-..|+-.+...|+.+..-...-..+...++-+.|...|+.++..-...  ..+|-.+-..-..-|+..
T Consensus       440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN  519 (660)
T COG5107         440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN  519 (660)
T ss_pred             HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence            2 4457788888888888888888777666666666777788888888888776543332  345555555556667777


Q ss_pred             HHHHHHHHHHhhccCc
Q 003991          637 EAIKDYDAALDLELDS  652 (781)
Q Consensus       637 ~A~~~~~~al~~~p~~  652 (781)
                      .+...=++..++.|..
T Consensus       520 ~v~sLe~rf~e~~pQe  535 (660)
T COG5107         520 NVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHhHHHHHHHHcCcH
Confidence            7777777777777654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.33  Score=51.38  Aligned_cols=250  Identities=13%  Similarity=0.094  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLS  507 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~  507 (781)
                      +...+.+.......|+++......+..+...|+.+.|+..+...+.  +.-    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4455555566667888888888888888888887778888877776  211    3356677888888888888888888


Q ss_pred             HHHHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---hhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          508 ACVKLDKENKSAYTYLG-LALSS--------IGEYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (781)
Q Consensus       508 ~a~~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (781)
                      .....+.-....|..++ .++..        .|+-+.|..+++...   ...|.+...-.         .-..+|.++-.
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~  398 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVK  398 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhc
Confidence            87766544444444444 33321        223333333333222   22222211100         00111211111


Q ss_pred             HHHhhCCCCHH--HHHHHHHHHHH--CCCHHHHH---HHHHHhhcc-CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991          576 QVLYIDKRFSK--AYHLRGLLLHG--LGQHKKAI---KDLSSGLGI-DPSNI-ECLYLRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       576 ~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~---~~~~~al~~-~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      +.- .++....  .++.++.++-.  .....+..   ..++. -+. ++++. --++.+|.++..+|+...|..+|..++
T Consensus       399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~  476 (546)
T KOG3783|consen  399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV  476 (546)
T ss_pred             ccc-ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            110 1111111  12223222211  11122222   22211 112 33322 346678999999999999999999998


Q ss_pred             hhccCcHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHhhhcCCCcccH
Q 003991          647 DLELDSMEKFVLQCLAFYQKEIALYTASK-INSEFCWFDIDGDIDPLFK  694 (781)
Q Consensus       647 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~  694 (781)
                      +..-....-.+....++|.+|..+...+. +.++..++.+|.+...++.
T Consensus       477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence            55322222234456688999999999988 9999999999988665543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.53  E-value=0.28  Score=53.09  Aligned_cols=237  Identities=15%  Similarity=0.029  Sum_probs=143.8

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL----------IGRGTARAFQRELEAAISDFTEAIQSNP  446 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (781)
                      ....++.|..+|......-.++.|...|-+.-. .|. ....          ...|.+-..-|++++|.+.|-.+-..+ 
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            445788999999999888888888888876522 111 1111          234445555688888888876543221 


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                             .-..++...|+|-...+.++..-.-..+  -..++.++|..+..+..|++|.++|...-..        -++.
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~  829 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQI  829 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHH
Confidence                   1223455667776666655432211111  1468889999999999999999999875322        3456


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (781)
                      .+++...+|++-..    ....-|++...+-.+|..+...|.-++|.+.|-+.-  .|   .+   --..+..++++.+|
T Consensus       830 ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---ka---Av~tCv~LnQW~~a  897 (1189)
T KOG2041|consen  830 ECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---KA---AVHTCVELNQWGEA  897 (1189)
T ss_pred             HHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---HH---HHHHHHHHHHHHHH
Confidence            67777777766433    334457777788888888888888888888775531  12   11   11234455667777


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                      .+..++--  -|.-.......+.-+...++.-+|++.++++
T Consensus       898 velaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  898 VELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            76655431  1222222233344445556666666666655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.50  E-value=0.13  Score=53.57  Aligned_cols=168  Identities=13%  Similarity=-0.002  Sum_probs=90.1

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---H
Q 003991          407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---A  483 (781)
Q Consensus       407 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~  483 (781)
                      .+..+|.+.+++..++.++..+|+...|.+.+++|+-.........+..-..-...|...        .--..+.+   .
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r--------L~~~~~eNR~ff  103 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR--------LDYRRPENRQFF  103 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc--------cCCccccchHHH
Confidence            345677777788888888888888888877777775421111000000000000000000        00001112   2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGH  556 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~  556 (781)
                      .+.+.....+.+.|-+..|+++.+-.+.++|. ++- +...+-....+.++++--++.++.......     ..|...+.
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S  183 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS  183 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence            24555566677778888888888888888877 553 334444444566666666666665443211     12344555


Q ss_pred             HHHHHHHcCCH---------------HHHHHHHHHHHhhCC
Q 003991          557 LTQFYQDLANS---------------EKALECLQQVLYIDK  582 (781)
Q Consensus       557 la~~~~~~g~~---------------~~A~~~~~~al~~~~  582 (781)
                      .+.+++..++.               +.|...+.+|+...|
T Consensus       184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            56666666665               666666666666554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=4  Score=51.37  Aligned_cols=84  Identities=12%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHH-HHHHHcCC
Q 003991           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG-CAFSALGR  118 (781)
Q Consensus        41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~g~  118 (781)
                      ..+-..-..|+|..|..+|.+++... +.+..+.+.-.+.+..|.+...+...+-.+.-.++..+-++.+| .+-..+++
T Consensus      1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred             HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence            44444556789999999999999998 44667777777888889999999888888877788777777776 34566676


Q ss_pred             HHHHHH
Q 003991          119 KEEALS  124 (781)
Q Consensus       119 ~~~A~~  124 (781)
                      ++.-..
T Consensus      1534 wD~~e~ 1539 (2382)
T KOG0890|consen 1534 WDLLES 1539 (2382)
T ss_pred             hhhhhh
Confidence            665543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=1.4  Score=46.05  Aligned_cols=185  Identities=10%  Similarity=0.014  Sum_probs=118.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCC------CHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhh---Ccc-------cH
Q 003991          496 FKDFNAAVEDLSACVKLDKE------NKS--------AYTYLGLALSSIGEYKKAEEAHLKAIQL---DRN-------FL  551 (781)
Q Consensus       496 ~~~~~~A~~~~~~a~~~~p~------~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~-------~~  551 (781)
                      .|-+++|.++-++++.....      ...        .+-.+..+-.-.|++.+|++....+.+.   .|.       .+
T Consensus       288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~  367 (629)
T KOG2300|consen  288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA  367 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence            46677888877777754211      111        2334566666789999998888777654   333       24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-------CHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR-F--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-------NIEC  621 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~  621 (781)
                      .....+|......+.++.|...|..+.+.... +  ...-.++|.+|.+.|+-+.-.+.++..-..+..       ...+
T Consensus       368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~  447 (629)
T KOG2300|consen  368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASI  447 (629)
T ss_pred             HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHH
Confidence            56667777777888899999999888876432 2  233457788899888766555555433222111       1356


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC  681 (781)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  681 (781)
                      ++..|...+.++++.||...+.+.+++. +..+.....+..+.-.+...+..|+..++..
T Consensus       448 ~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~n  506 (629)
T KOG2300|consen  448 LYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRN  506 (629)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence            7778888889999999999999999886 3333333334444445555555555444433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.41  E-value=1.5  Score=45.56  Aligned_cols=132  Identities=17%  Similarity=0.073  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      ...+...|..+..++++.+|..+|.++.+...+.+     +++.++-...+-+++.+.-...+...-+..|..+....-.
T Consensus         6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~   85 (549)
T PF07079_consen    6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK   85 (549)
T ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            34667889999999999999999999988665543     3344444445556778777777777777889888888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADI---------------LHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                      |...++.+.+.+|++.+......-......               -...+.++...|++.++...+++.+..
T Consensus        86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            999999999999999988776653222111               123577889999999999999998865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.40  E-value=0.0064  Score=38.26  Aligned_cols=33  Identities=36%  Similarity=0.654  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            357778888888888888888888888887764

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.22  Score=52.73  Aligned_cols=242  Identities=16%  Similarity=0.047  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLS  473 (781)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~  473 (781)
                      ....+.+....+..|.++...+..+..+...|+.+.|+..++..+.  +..    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4455555566667899999999999999999998889999988877  221    2357788899999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          474 KALEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSACV---KLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (781)
Q Consensus       474 ~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (781)
                      ...+.+.-+.-.+..++ .+++.        .|+-+.|..+++...   ...|.+...-         ..-..++.++-.
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E---------~f~~RKverf~~  398 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE---------KFIVRKVERFVK  398 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh---------HHHHHHHHHHhc
Confidence            98887654444444444 33332        234444444443332   2222221110         000112222211


Q ss_pred             HHHhhCcccHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hh-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          542 KAIQLDRNFLE--AWGHLTQFYQD--LANSEKALECLQQVL---YI-DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       542 ~al~~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      +.- .++..+.  .++.++.++..  .....+.. -++...   .. ++++ .--+..+|.++..+|+...|..+|...+
T Consensus       399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~  476 (546)
T KOG3783|consen  399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV  476 (546)
T ss_pred             ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            110 1111111  22333333321  12222222 111111   11 2222 2246678999999999999999999887


Q ss_pred             cc---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhccCc
Q 003991          613 GI---DPS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELDS  652 (781)
Q Consensus       613 ~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  652 (781)
                      +.   ...    -|.+++.+|..|..+|. ..++..++.+|-+...++
T Consensus       477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            43   111    36899999999999999 999999999998877543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.25  E-value=0.006  Score=39.36  Aligned_cols=30  Identities=33%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          621 CLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      ++..+|.+|..+|++++|+.+|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            366788888888888888888888665443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.19  E-value=0.43  Score=45.60  Aligned_cols=188  Identities=10%  Similarity=0.001  Sum_probs=99.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH-HHHHHHHHHHHHc
Q 003991          393 NEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG-EAWKRRGQARAAL  462 (781)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~  462 (781)
                      ...+.++|+..|+++++..+...    .++-.+..+++.+|+|++-...|.+.+..-     .+.. .....+-..-...
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            34589999999999999988754    467778889999999999999999887531     1111 1111121211222


Q ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHH
Q 003991          463 GESVEAIQDLSKALEF--EPNSADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLG  524 (781)
Q Consensus       463 g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------------~~~~~~la  524 (781)
                      .+.+--...|+..+..  +..+...|    ..+|.+|+..++|.+-.+.+++.-......            .++|..-.
T Consensus       119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI  198 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI  198 (440)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence            3333333333333321  11122222    346667777666666666555544332111            12333334


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCccc--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNF--LEA----WGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      ..|..+.+...-...|++++.+...-  |.+    .-.=|..+.+.|++++|...|-.+++.
T Consensus       199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN  260 (440)
T KOG1464|consen  199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN  260 (440)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence            44555555555555566655543221  111    111233455556666666555555543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.15  E-value=0.022  Score=62.59  Aligned_cols=124  Identities=22%  Similarity=0.265  Sum_probs=102.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--c---hhhhhhHHHHHHhh--hCHHHHHHHHHHHHhcC
Q 003991           27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY--E---IQDICNRAFCYSQL--ELHKHVIRDCDKALQLD   99 (781)
Q Consensus        27 ~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~--~---~~~~~~rA~~~~~~--~~~~~A~~~~~~al~~~   99 (781)
                      -+++.++..+..+...++..|++++|..|.--|..++.+-|  +   ...+.+++.|+..+  |+|..++.+|+-|+...
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~  123 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ  123 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence            34677788999999999999999999999999999888763  2   22378999988876  69999999999999999


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (781)
Q Consensus       100 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  150 (781)
                      |...++.+.++.+|..+++++-|++...-.....|......-.+.++....
T Consensus       124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999997777677777755544334444333

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.06  E-value=0.031  Score=39.44  Aligned_cols=40  Identities=35%  Similarity=0.527  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      +.++.+|..+.++|+|++|..+.+.+++++|++..+..+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4577888888888888888888888888888887755443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.05  E-value=0.93  Score=49.28  Aligned_cols=216  Identities=13%  Similarity=0.066  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHH
Q 003991          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--------AGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~  467 (781)
                      ..++|+++    ++.+| ++..|..+|......-.++.|...|-++-....-        -..--...+.+-..-|++++
T Consensus       678 gledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  678 GLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             chHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            34445444    33455 5899999999988888888888888765321110        00001223444455688888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      |.+.|-.+-..   +     ....++.+.|+|-.....++..-.-+.+  -..++.++|..+..+..+++|.++|.+.-.
T Consensus       753 aek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  753 AEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88887554221   1     1223455667777666665542211111  146888999999999999999999987532


Q ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (781)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (781)
                              ..++..+++....|++-..+.    ..-|++...+-.+|..+...|.-++|.+.|-+.-  .|.   +   -
T Consensus       825 --------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---A  884 (1189)
T KOG2041|consen  825 --------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---A  884 (1189)
T ss_pred             --------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---H
Confidence                    234566777777776654433    3457778888889999999999999999886542  222   1   1


Q ss_pred             HHHHHHhCCHHHHHHHHHH
Q 003991          626 ASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~  644 (781)
                      -.....++++.+|.+.-++
T Consensus       885 v~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  885 VHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            1233456677777765443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.93  E-value=0.016  Score=36.36  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM  413 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~  413 (781)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555555554

>PRK10941 hypothetical protein; Provisional

Probab=95.89  E-value=0.067  Score=52.90  Aligned_cols=72  Identities=14%  Similarity=0.037  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHH
Q 003991          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL  658 (781)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  658 (781)
                      ...++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            345666777888888888888888888888888888888888888888888888888888888888875443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.80  E-value=0.21  Score=52.17  Aligned_cols=87  Identities=9%  Similarity=0.018  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHhhccC
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGID  615 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  615 (781)
                      ...|+.++...+.++..|........+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++..+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            4445555555555555555555554445555555555555555555555555555444444333 555555555555555


Q ss_pred             CCCHHHHH
Q 003991          616 PSNIECLY  623 (781)
Q Consensus       616 p~~~~~~~  623 (781)
                      |+++..|.
T Consensus       171 pdsp~Lw~  178 (568)
T KOG2396|consen  171 PDSPKLWK  178 (568)
T ss_pred             CCChHHHH
Confidence            55554443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.78  E-value=0.13  Score=42.39  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      +|..++..|++-+|+++.+..+..++++.   ..+...|.++..+.            ......+...-+          
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y----------   59 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY----------   59 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH----------
Confidence            46678888999999999999888877765   34445555554432            111111122111          


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                       .-.++++|.++..+.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus        60 -Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   60 -LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             -HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence             223556666666666666666666666665566666666666666554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.76  E-value=6.3  Score=49.77  Aligned_cols=127  Identities=12%  Similarity=0.110  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991          567 SEKALECLQQVLY---ID----KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       567 ~~~A~~~~~~al~---~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (781)
                      ..+-+-.+++++-   .+    ..-.+.|...|++....|+++.|..++-.|.+..  -+.+....|..+...|+-..|+
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence            4444445555442   22    2346789999999999999999999999988876  4689999999999999999999


Q ss_pred             HHHHHHHhhc-cCc-------HHHHH--HHHHHHHHHHHHHHHHhchh--hHHHHHhhhcCCCcccHH
Q 003991          640 KDYDAALDLE-LDS-------MEKFV--LQCLAFYQKEIALYTASKIN--SEFCWFDIDGDIDPLFKE  695 (781)
Q Consensus       640 ~~~~~al~~~-p~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~  695 (781)
                      ..+++.++.+ |+.       |....  ..+.+.+..+.-....++++  .-+..|..+..+.|.|..
T Consensus      1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred             HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence            9999999654 431       11111  11122333333333334432  345567777777776554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.69  E-value=3.5  Score=43.56  Aligned_cols=94  Identities=10%  Similarity=0.042  Sum_probs=79.3

Q ss_pred             HHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhc
Q 003991           56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA  133 (781)
Q Consensus        56 ~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~  133 (781)
                      +..|..|.... .++...++-..-.-+.+.+.+.-+.|.+++..+|+++..|+-.+.=.+..+. ++.|...|.++|..+
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            56788888888 6888888777766677779999999999999999999999999976666555 999999999999999


Q ss_pred             cCChHHHHHHHHHHHH
Q 003991          134 LHQSADLKQFLELEEL  149 (781)
Q Consensus       134 ~~~~~~~~~~~~~~~~  149 (781)
                      |++|.-.....++.-.
T Consensus       171 pdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  171 PDSPKLWKEYFRMELM  186 (568)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999887766555543

>PRK10941 hypothetical protein; Provisional

Probab=95.68  E-value=0.094  Score=51.91  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=64.2

Q ss_pred             hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 003991           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK  141 (781)
Q Consensus        72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  141 (781)
                      ..|.=.+|.+.++++.|+..++..+.++|+.+.-+--+|.+|.++|.+..|..+++..++..|+.+....
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            4467778999999999999999999999999988888999999999999999999999999999986643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.65  E-value=0.23  Score=44.21  Aligned_cols=85  Identities=18%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..++.........++.+++..++..+--..|..+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34455555556666666666666666666667766666666677777777777777776666666666666666666666


Q ss_pred             HcCCH
Q 003991          461 ALGES  465 (781)
Q Consensus       461 ~~g~~  465 (781)
                      ..|+.
T Consensus        90 ~~~D~   94 (160)
T PF09613_consen   90 ALGDP   94 (160)
T ss_pred             HcCCh
Confidence            66554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.59  E-value=0.044  Score=53.04  Aligned_cols=77  Identities=18%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (781)
                      .-...+.-..+.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            33445555667888889999999999999998998888888888888888888899999988998888888776643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.58  E-value=0.25  Score=44.00  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      ..+..+..+-...++.+++...+...--+.|..+..-..-|+++...|++.+|+..|+.+....|..+.+--.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44555566666677888888888877778888888888888888888888888888888888788888888888888888


Q ss_pred             hCCH
Q 003991          632 IGEY  635 (781)
Q Consensus       632 ~g~~  635 (781)
                      +|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            7764

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.55  E-value=0.048  Score=52.84  Aligned_cols=76  Identities=25%  Similarity=0.411  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      .-+..|.-....|+.++|..+|+-++...|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3345566778899999999999999999999999999999999999999999999999999999999888776654

>smart00028 TPR Tetratricopeptide repeats

Probab=95.37  E-value=0.027  Score=34.75  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=17.1

Q ss_pred             hhhHHHHHHhhhCHHHHHHHHHHHHhcCCC
Q 003991           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (781)
Q Consensus        72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~  101 (781)
                      +.++|.++..+|++++|+..++++++++|+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            445555555555555555555555555554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.29  E-value=0.21  Score=41.15  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEA---WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (781)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (781)
                      +|..++..|++-+|++..+..+...+++...   +...|.++.            +.+......+....+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH--------
Confidence            4566777888888888888888777666533   333333332            22333332233344433        


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (781)
                         .+++++.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               3789999999999999999999999988888899999999998865

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.27  E-value=0.089  Score=53.38  Aligned_cols=106  Identities=12%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcccchhh-----------h--------hhHHHHHHhhhCHHHHHHHHHHHHhcCCCchh
Q 003991           44 AKLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ  104 (781)
Q Consensus        44 ~~~~~~g~~~~A~~~y~~ai~~~~~~~~-----------~--------~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~  104 (781)
                      ...|++|+|..|+.-|..+++++....+           .        -....||+++++.+-|+.-.-+.|-++|.++.
T Consensus       184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr  263 (569)
T PF15015_consen  184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR  263 (569)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence            3568999999999999999987522211           1        15688999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh---hccCChHHHHHHHHHHHH
Q 003991          105 AYILKGCAFSALGRKEEALSVWEKGYE---HALHQSADLKQFLELEEL  149 (781)
Q Consensus       105 a~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~  149 (781)
                      -|.+.+.++..+.+|-+|.+.+--+.-   ++.+....+..++.+.-.
T Consensus       264 nHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq  311 (569)
T PF15015_consen  264 NHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ  311 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence            999999999999999999998877643   344444445555555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.22  E-value=0.24  Score=39.86  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCH
Q 003991          401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGES  465 (781)
Q Consensus       401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~  465 (781)
                      +..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++...|.-
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            455667777777777777777777777777777777777777766554  33444444444444443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.13  E-value=0.031  Score=51.86  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             HHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991           77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus        77 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                      ....+.+|.+.|.+.+++|+++-|.+...|+++|.-..+.|+++.|.+.|++.|++.|+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778999999999999999999999999999999999999999999999988877664

>smart00028 TPR Tetratricopeptide repeats

Probab=95.13  E-value=0.034  Score=34.27  Aligned_cols=32  Identities=38%  Similarity=0.736  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .++..+|.++..+|++++|...|++++++.|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666777777777777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.97  E-value=0.34  Score=50.13  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      ..|+.-.|-.-+..+++..|..|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            45666666666666777777777766677777777777777776665554443333444455555666677777777776


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      .-.+...-.++++...-+.....+|-+++|.-++++.+.++|.
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            6666655555665555555555666677777777777777664

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.92  E-value=0.35  Score=38.87  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=36.5

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCC
Q 003991          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE  634 (781)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  634 (781)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445566666667766777777777777777777777776666665543  3444444444444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.85  E-value=1.2  Score=47.91  Aligned_cols=126  Identities=15%  Similarity=0.077  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 003991          502 AVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ-VL  578 (781)
Q Consensus       502 A~~~~~~a~~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  578 (781)
                      ++..+...+.+++.++..+..  +...+...+....+.-.+..++..+|.+..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444444455555544222  244444455555555555555666666655555555555555444444443333 44


Q ss_pred             hhCCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991          579 YIDKRFSKAYHLR------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (781)
Q Consensus       579 ~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (781)
                      ...|.+......+      +.....+|+..++.....++....|.++.+...+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            5555554443333      555555555555555555555555555444443333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.83  E-value=0.58  Score=38.77  Aligned_cols=94  Identities=21%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------h
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------S  444 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~  444 (781)
                      .+..|...+..|-|++|...+.++.+....            +.-++..++.++..+|+|++++....+++.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            344566778889999999999999886432            234567788888889999887777666654       2


Q ss_pred             CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991          445 NPSAGE----AWKRRGQARAALGESVEAIQDLSKALE  477 (781)
Q Consensus       445 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~  477 (781)
                      +.+...    +.+..+..+..+|+.++|+..|+.+-+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            333322    334455556666666666666665543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.75  E-value=0.49  Score=49.03  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  470 (781)
                      .+..|+...|-.-...++...|..|......+.+...+|+|+.+...+..+-..-..-..+...+-.....+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            45678888888888889999999998888899999999999999888876655544444555566677778889999988


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (781)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~  517 (781)
                      ...-.+.-.-+++++....+.....+|-++++..++++.+.++|...
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            88888776666777776666666777888999999999998887643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.53  E-value=3.4  Score=37.11  Aligned_cols=93  Identities=9%  Similarity=0.015  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHCCCHHHHHHHHHHhh-ccCCCCHHHHHHHHHHH
Q 003991          555 GHLTQFYQDLANSEKALECLQQVLYIDKR--F--SKAYHLRGLLLHGLGQHKKAIKDLSSGL-GIDPSNIECLYLRASCY  629 (781)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~  629 (781)
                      ...+.+....|+...|+..|..+-...|-  -  ..+...-+.++...|-|++-..-.+..- ..+|-...+...||..-
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa  177 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA  177 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence            34444444455555555555444332221  0  1122333444444555544433333221 11222334444455555


Q ss_pred             HHhCCHHHHHHHHHHHHh
Q 003991          630 HAIGEYREAIKDYDAALD  647 (781)
Q Consensus       630 ~~~g~~~~A~~~~~~al~  647 (781)
                      .+.|++..|...|.+...
T Consensus       178 ~kagd~a~A~~~F~qia~  195 (221)
T COG4649         178 YKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HhccchHHHHHHHHHHHc
Confidence            555555555555555444

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.51  E-value=11  Score=42.92  Aligned_cols=118  Identities=11%  Similarity=-0.020  Sum_probs=58.8

Q ss_pred             HHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 003991          528 SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  603 (781)
                      ....+.+.|...+.+......-.    ..++..+|.-....+...+|...+..+..... +.........+....++++.
T Consensus       252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHH
Confidence            34455566666666543332211    22233333333333224455555555432221 22233333334446666666


Q ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 003991          604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (781)
Q Consensus       604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  646 (781)
                      +...+...-..........+.+|..+..+|+.++|...|+++.
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            6666655433333445666677777666777777777776663

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.46  E-value=3.5  Score=37.01  Aligned_cols=143  Identities=13%  Similarity=-0.062  Sum_probs=105.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHH
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFY  561 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~  561 (781)
                      .-+.-+...+..++|+..|...-+..-..  .-+....+.+..+.|+...|+..|..+-...|-.    ..+...-+.++
T Consensus        63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence            34445567788899999998877665433  3456778999999999999999999976654322    23445566778


Q ss_pred             HHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          562 QDLANSEKALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       562 ~~~g~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      ...|-|++.....+..- ..+|-...+.-.||..-++.|++..|...|.+... +...|....+.+++.+.
T Consensus       143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            88999998877666543 33455566788899999999999999999998877 55556666666666554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=2.2  Score=46.00  Aligned_cols=128  Identities=21%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-H
Q 003991          433 AAISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C  509 (781)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-a  509 (781)
                      .++..+...+..+|.++..+..  ++..+...+....+...+..++..+|.+..+..+++......|....+...+.. +
T Consensus        49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a  128 (620)
T COG3914          49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA  128 (620)
T ss_pred             HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3555555556666766665333  355666667777777777777777877777777777777666655555544444 6


Q ss_pred             HHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991          510 VKLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (781)
Q Consensus       510 ~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (781)
                      ....|.+......+      +.....+|+..++.....++....|.++.+...+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            66777776554444      6666677777777777777777777776555544444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.13  E-value=0.63  Score=40.67  Aligned_cols=82  Identities=18%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 003991          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (781)
Q Consensus       554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (781)
                      +......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444557888888888887777888888888888888888888888888888888877777778888888888888


Q ss_pred             CH
Q 003991          634 EY  635 (781)
Q Consensus       634 ~~  635 (781)
                      +.
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            74

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.95  E-value=0.62  Score=44.61  Aligned_cols=68  Identities=19%  Similarity=0.248  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCHH-------HHHHHHHHhhccCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          585 SKAYHLRGLLLHGLGQHK-------KAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      +..+..+|++|...|+.+       .|+..|.++++...      +...+.+.+|.+..+.|++++|.++|.+++.....
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            345666677777777643       45555555554322      12467888999999999999999999999876544


Q ss_pred             c
Q 003991          652 S  652 (781)
Q Consensus       652 ~  652 (781)
                      +
T Consensus       198 s  198 (214)
T PF09986_consen  198 S  198 (214)
T ss_pred             C
Confidence            3

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.82  E-value=1.3  Score=37.83  Aligned_cols=75  Identities=23%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHhhc-cCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       585 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      ....+++++++....   +..+.+.+++..++ -.|. .-+..+.+|..+.+.|+|+.|+.+.+..++..|++.++..+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            556778888887655   45667888888886 4443 346788899999999999999999999999999988765443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.77  E-value=1  Score=39.44  Aligned_cols=82  Identities=12%  Similarity=0.012  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 003991          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (781)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (781)
                      +..........++.+++..++..+--..|+.+..-..-|.++...|+|.+|+..|+......+..+...-.++.|+..+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444446666666666666666666666666666666666777777777666666666555655556666666665


Q ss_pred             CH
Q 003991          464 ES  465 (781)
Q Consensus       464 ~~  465 (781)
                      +.
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            53

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.74  E-value=0.11  Score=48.52  Aligned_cols=59  Identities=19%  Similarity=0.292  Sum_probs=41.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Q 003991          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (781)
                      ...+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34456677777777777777777777777777777777777777777777777777765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.60  E-value=0.26  Score=51.67  Aligned_cols=102  Identities=22%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      .+.....|.-.+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.....++.++|....+++.++.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            344445555566667778888888888888888888888888887764   56667777777888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNS  482 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~  482 (781)
                      ++..++++.+|+.+...+....|.+
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchh
Confidence            8888888888888887777777744

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.47  E-value=6.2  Score=42.92  Aligned_cols=57  Identities=11%  Similarity=0.054  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTE  440 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (781)
                      -|-.+|...+..=+++-|.+.|.++-..              ....|. -..+|.++...|++.+|.+.|.+
T Consensus       587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHH
Confidence            4566666667777777777777665321              111111 13455555556666666555544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.44  E-value=21  Score=42.30  Aligned_cols=100  Identities=23%  Similarity=0.206  Sum_probs=76.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~  454 (781)
                      +....++...+.|+.|+..|+++-...|..   .++.+..|.....+    |   .+++|+.-|++.- -.|..+--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            344566777888999999999998888764   45777788777653    2   4667777776643 34566667888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          455 RGQARAALGESVEAIQDLSKALEFEPNSADI  485 (781)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  485 (781)
                      .|.+|..+|++++-++++.-+++..|+.|..
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            8999999999999999999999998887654

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=5.5  Score=42.87  Aligned_cols=154  Identities=16%  Similarity=0.059  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C------------
Q 003991          463 GESVEAIQDLSKALEF------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----D------------  513 (781)
Q Consensus       463 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~------------  513 (781)
                      ..|++|...|.-+...            .|.+.+.+..++.+...+|+.+-|.....+++=.     .            
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            4567777777766554            3445667777777777777777777777776521     1            


Q ss_pred             ----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----h
Q 003991          514 ----KENKS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQ-DLANSEKALECLQQVL-----Y  579 (781)
Q Consensus       514 ----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al-----~  579 (781)
                          |.+-.   +++..-..+.+.|-+..|.+++.-.+.++|. +|.+...+..+|. +..+|.=-+..++..-     .
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence                11111   1122233344556666666666666666665 5544444444332 3445554455444431     2


Q ss_pred             hCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCC
Q 003991          580 IDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~  617 (781)
                      .-|+.+ .-..+|..|.....   -+.|...+.+|+...|.
T Consensus       412 ~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            223221 12233444444333   34555666666665553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.36  E-value=1.3  Score=41.06  Aligned_cols=99  Identities=13%  Similarity=-0.014  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                      .++..+|..|.+.|+.+.|++.|.++......   ..+.++.+..+....|++.....+..++-.+-.. ...|-.....
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence            45666777777777777777777776654332   1355666677777777777777777777655332 2224344444


Q ss_pred             HHHHHHHHHHHhchhhHHHHHhh
Q 003991          663 FYQKEIALYTASKINSEFCWFDI  685 (781)
Q Consensus       663 ~~~~~~~~~~~~~~~~A~~~~~~  685 (781)
                      ....|..+...++|..|...|-.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~  138 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLD  138 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHc
Confidence            44556666667777777777643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.34  E-value=0.8  Score=53.93  Aligned_cols=134  Identities=13%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-------  444 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  444 (781)
                      ....-....|......|.+.+|.+      ++.... ...|.....+..++.++...|++++|+..-.++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            345566777888888888888877      444222 346777888888999999999999888887776543       


Q ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          445 -NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       445 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                       .|+....+.+++......++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.|...
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             2334456667777777777777777777776654        2333445556666666667777777777766653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.17  E-value=3.8  Score=44.47  Aligned_cols=17  Identities=24%  Similarity=0.092  Sum_probs=6.8

Q ss_pred             HHHHHHcCCHHHHHHHH
Q 003991          456 GQARAALGESVEAIQDL  472 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~  472 (781)
                      |.++...|++.+|.+.|
T Consensus       639 A~~~Ay~gKF~EAAklF  655 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLF  655 (1081)
T ss_pred             HHHHHhhhhHHHHHHHH
Confidence            33333344444444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.14  E-value=1.4  Score=40.76  Aligned_cols=59  Identities=12%  Similarity=0.072  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQV  577 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (781)
                      ++..+|..|.+.|+.++|++.|.++.+.....   ...+..+..+.+..+++..+..++.++
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34444555555555555555555444432211   333444444444444554444444444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=12  Score=40.50  Aligned_cols=155  Identities=16%  Similarity=0.057  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C-----------
Q 003991          394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N-----------  445 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-----------  445 (781)
                      ...|++|...|.-+...            .|.+...++.++.+...+|+.+.|....++++=.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34566666666655543            4667788888899998898888877777766521     1           


Q ss_pred             -----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHH-----
Q 003991          446 -----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACV-----  510 (781)
Q Consensus       446 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a~-----  510 (781)
                           |.+-.   +++.....+.+.|-+..|.++++-.+.++|. ++-+...+..+| ++..+|+--++.++..-     
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l  410 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL  410 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence                 11211   2333344455567777777777777777776 554444333333 34445555555554432     


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCcc
Q 003991          511 KLDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRN  549 (781)
Q Consensus       511 ~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  549 (781)
                      ..-|+.+. -..+|..|.....   -..|...+.+|+...|.
T Consensus       411 ~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  411 SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            22233222 2334555554444   45566666666666553

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.82  E-value=0.25  Score=48.25  Aligned_cols=84  Identities=11%  Similarity=-0.015  Sum_probs=64.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL-RASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      |.++-...|+++..|...+....+.|.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++.++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334444567778888877777777788888888888888888888888876 5556677788888888888888888888


Q ss_pred             HHHHH
Q 003991          653 MEKFV  657 (781)
Q Consensus       653 ~~~~~  657 (781)
                      |..|.
T Consensus       176 p~iw~  180 (435)
T COG5191         176 PRIWI  180 (435)
T ss_pred             chHHH
Confidence            88775

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.78  E-value=1.6  Score=47.21  Aligned_cols=89  Identities=21%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcccc-------hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQSYE-------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~~~-------~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      ...+.|+..+|..++++|...+.-.+.       ....-+.+.||+.+.+++.|++.+.+|=+.||..+---+..-.+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~  439 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL  439 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            345789999999999999998765411       1225578889999999999999999999999998888888888888


Q ss_pred             HcCCHHHHHHHHHHHH
Q 003991          115 ALGRKEEALSVWEKGY  130 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al  130 (781)
                      .-|+-++|+.+..+..
T Consensus       440 ~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  440 AEDKSEEALTCLQKIK  455 (872)
T ss_pred             HhcchHHHHHHHHHHH
Confidence            9999999998887774

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.74  E-value=0.22  Score=32.24  Aligned_cols=28  Identities=29%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          104 QAYILKGCAFSALGRKEEALSVWEKGYE  131 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~  131 (781)
                      +.|.++|.+-+..++|++|+..|+++|+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5688999999999999999999999954

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.71  E-value=11  Score=36.93  Aligned_cols=265  Identities=13%  Similarity=0.078  Sum_probs=155.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHH---HHHhC--CCcHHH
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKEDP--------MYPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA  451 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--p~~~~~  451 (781)
                      +.+|......+++++|+..|.+++....        +...+...++.+|...|++..-.+....   +....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            5678888899999999999999986521        1235678899999999987654443332   22211  222222


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 003991          452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS  518 (781)
Q Consensus       452 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~p~~~~  518 (781)
                      ...+-..+ .....++.-+..+...++......      ..-..+..+++..|.|.+|+......+..      .+.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22222111 122345555666665555433221      23345677888999999999887766542      233456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH-
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA-  587 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~-  587 (781)
                      ++..-..+|....+..++...+..|-..     .|....+.  ..-|..+....+|.-|..+|-++++-..   .+..+ 
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            6777788888888888877777665433     23222222  2335556677889999999988876543   23333 


Q ss_pred             ----HHHHHHHHHHCCCHHHHHHHH--HHhhc-cCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhhccC
Q 003991          588 ----YHLRGLLLHGLGQHKKAIKDL--SSGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       588 ----~~~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  651 (781)
                          |..+..+...  ..++-...+  ...++ .+....++....+..+.  .+.+|..|+..|..-+..+|-
T Consensus       247 ~sLkYmlLSkIMlN--~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~  317 (421)
T COG5159         247 VSLKYMLLSKIMLN--RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF  317 (421)
T ss_pred             HHHHHHHHHHHHHh--hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence                2333433333  333322222  22233 23334566666666664  345788888888877766653

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.62  E-value=16  Score=38.86  Aligned_cols=95  Identities=13%  Similarity=-0.069  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      +...+..+-.++.....+.-....+.+++... .+..+++.++.+|... ..++-....++.++.+-++...-..++..|
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y  142 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY  142 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            33444444444444444444555555555543 3344555666666655 445555556666666555555555555555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 003991          494 FKFKDFNAAVEDLSACVK  511 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~  511 (781)
                      .. ++-+.+..+|.+++.
T Consensus       143 Ek-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         143 EK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HH-hchhhHHHHHHHHHH
Confidence            44 555566666666553

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.49  E-value=4.9  Score=43.28  Aligned_cols=158  Identities=14%  Similarity=0.040  Sum_probs=86.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991          389 IAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  467 (781)
                      ......++++++....... +.-|.- ..-....+..+..+|..+.|+...        .+++..+.   +..+.|+.+.
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFe---LAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFE---LALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHH---HHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhH---HHHhcCCHHH
Confidence            3455689999987777521 222322 333556667777788777777653        23444443   3457788888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (781)
                      |.+..++     .+++..|..+|......|+++-|.++|+++-.        +..+..+|...|+.+.-.+....+....
T Consensus       337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            7765432     23677888888888888888888888887532        2445666777777665555555544332


Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          548 RNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      ..+     ..-.+++..|+.++.+..+.+
T Consensus       404 ~~n-----~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  404 DIN-----IAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -HH-----HHHHHHHHHT-HHHHHHHHHH
T ss_pred             CHH-----HHHHHHHHcCCHHHHHHHHHH
Confidence            211     112234445666666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.48  E-value=2  Score=41.10  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      ..+.+.+|.+..+.|++++|..+|.+++...
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4567778888888888888888888887653

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.30  E-value=1.4  Score=52.01  Aligned_cols=164  Identities=21%  Similarity=0.245  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Ccc
Q 003991          485 ILHERGIVNFKFKDFNAAVE------DLSAC-VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRN  549 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~------~~~~a-~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~  549 (781)
                      -....|......+.+.+|.+      .+... -.+.|.....+..++.++...|++++|+..-.++.-+        .|+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            34556666777788887777      44422 2346777888999999999999999999988877543        345


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----
Q 003991          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----  617 (781)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----  617 (781)
                      ....+.+++...+..++...|...+.++..+        .|.-.....+++.++...++++.|+++.+.|......    
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            5778889998899999999999999888754        3455556678888888999999999999999875321    


Q ss_pred             ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       618 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                          ....+..+++.+..++++..|....+....+
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence                3456677788888888888888777766554

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=14  Score=37.20  Aligned_cols=267  Identities=14%  Similarity=0.082  Sum_probs=165.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCc--H
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--G  449 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~  449 (781)
                      +..+.......++++++..|..++..  .|.+        ......+|..+...|+.++-.......-.   .-+..  .
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            56667777788889999999998874  1221        24567899999999998876655544322   11111  1


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--CC
Q 003991          450 EAWKRRGQARA-ALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DK--EN  516 (781)
Q Consensus       450 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~p--~~  516 (781)
                      .....+-.... .-+..+.-+..+..+++......      ..-..+..+|+..++|.+|+......++-    +.  .-
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            12222222222 22344555566666665433221      23345778899999999999887776543    22  22


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK  586 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~  586 (781)
                      .+++..-..+|+...+..+|...+..|-...     |...  ..-..=|.++....+|.-|..+|=++++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            4556667788888888888888887765432     2211  1222335566667899999999999886533   2233


Q ss_pred             H-----HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhccC
Q 003991          587 A-----YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       587 ~-----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~  651 (781)
                      +     |..+..+....-+--.++-.-+.+++....+..+....|..+..  +.+|+.|+..|..-+..+|-
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            3     33334443333333334444455666666678888888888754  45789999999988887764

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.21  E-value=3.8  Score=35.19  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          451 AWKRRGQARAALG---ESVEAIQDLSKALE-FEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (781)
Q Consensus       451 ~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  519 (781)
                      ..+++++++....   +..+.+.+++..++ -.|. .-+..+.++.-+++.++|+.++.+.+..++..|++..+
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3444444444332   23344455555553 2222 13344455555555555555555555555555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.11  E-value=0.33  Score=32.17  Aligned_cols=30  Identities=37%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          103 LQAYILKGCAFSALGRKEEALSVWEKGYEH  132 (781)
Q Consensus       103 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  132 (781)
                      +.++..+|.+|..+|++++|+..+++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788999999999999999999999543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.01  E-value=1.6  Score=47.19  Aligned_cols=93  Identities=11%  Similarity=-0.064  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (781)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (781)
                      +.+-|.-.++..+|..++++|...+...|.+      ......++.||..+.+.+.|.+++++|-+.+|.++-....+..
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3444555555666666666666666554433      2344555566666666666666666666666666555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 003991          492 VNFKFKDFNAAVEDLSACV  510 (781)
Q Consensus       492 ~~~~~~~~~~A~~~~~~a~  510 (781)
                      +....+.-++|+.+.....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             HHHHhcchHHHHHHHHHHH
Confidence            5555666666665555543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.00  E-value=0.53  Score=38.35  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=34.9

Q ss_pred             HHhhhCHHHHHHHHHHHHhcCC---------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 003991           79 YSQLELHKHVIRDCDKALQLDP---------TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (781)
Q Consensus        79 ~~~~~~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  136 (781)
                      .++.|||.+|++.+.+.++.-.         ....+.+.+|.++...|++++|+..++.|+.++.+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3444555555444444433321         123466777888888888888888888886655433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.94  E-value=0.36  Score=47.14  Aligned_cols=77  Identities=16%  Similarity=0.229  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991          479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (781)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (781)
                      .|+++..|...+......+-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+.+..|.
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            34444444444444444444444444444444445544444443 233334444455555555555555554444443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.83  E-value=6.2  Score=40.77  Aligned_cols=170  Identities=19%  Similarity=0.167  Sum_probs=103.6

Q ss_pred             HHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991          388 GIAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       388 a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~  454 (781)
                      -......|.++ +++..-.+.++.+|+...+|...-.++...-            -.++-+.+...+++.+|+...+|+.
T Consensus        35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h  114 (421)
T KOG0529|consen   35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH  114 (421)
T ss_pred             HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence            33344556554 6788888888999998888766555443321            2344556666677777777777777


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          455 RGQARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       455 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      +..++.+.+.  +..-+...+++++.+|.+..+|...=.+....    ....+=+++..+++..++.+..+|.....++.
T Consensus       115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            7777766543  56667777777777777666554443333322    22455566677777777777777766665554


Q ss_pred             H------cCC------HHHHHHHHHHHHhhCcccHHHHHHH
Q 003991          529 S------IGE------YKKAEEAHLKAIQLDRNFLEAWGHL  557 (781)
Q Consensus       529 ~------~g~------~~~A~~~~~~al~~~~~~~~~~~~l  557 (781)
                      .      .|.      ...-++....|+-.+|++..+|+..
T Consensus       195 ~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~  235 (421)
T KOG0529|consen  195 TLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH  235 (421)
T ss_pred             HhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence            2      221      2233444555566667776666663

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.63  E-value=16  Score=37.66  Aligned_cols=30  Identities=13%  Similarity=0.012  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      .+.+|.+..-+++|..|.++|-+|+...|.
T Consensus       250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            334455544455555555555555554444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.46  E-value=0.44  Score=31.56  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      .++.++|.+|..+|++++|..++++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            467788899999999999999988888763

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=6.1  Score=40.83  Aligned_cols=131  Identities=21%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALG------------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--  497 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--  497 (781)
                      .++++.-.+.+..+|+...+|...-.++...-            -.++-+.+...+++.+|++..+|+....++.+.+  
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            45677777777778877777665544443221            2334445555555666666666666665555443  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      ++..-+...+++++.+|.+..+|...=.+.....    ...+-+++..+++..++.+..+|.....++.
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            2455555566666666655555544333332211    1334455555555555555555555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.16  E-value=0.32  Score=28.47  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          104 QAYILKGCAFSALGRKEEALSVWE  127 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~  127 (781)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467778888888888888887664

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.53  E-value=1.3  Score=36.15  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc----c-c-----hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCC
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQS----Y-E-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~----~-~-----~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p  100 (781)
                      ....++.|||..|++.+.+.....    . .     .....++|......|++++|+..+++||.+-.
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456678999999988888877654    1 1     12266899999999999999999999998753

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.13  E-value=3.2  Score=31.88  Aligned_cols=62  Identities=6%  Similarity=0.041  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      ...+..|.-++...+.++|+..+.++++..++.+.-+.   .+..+|...|+|.+.+.+..+-+.
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788888999999999999999998877665444   455677788888888877655444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.43  E-value=33  Score=36.68  Aligned_cols=99  Identities=10%  Similarity=-0.074  Sum_probs=69.6

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .|.+-..+..+-..+-.+..++-...++.+++... ++..+++.++.+|... ..+.-....++.++.+-++...-..++
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa  139 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA  139 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence            44444444444445545555566666777777655 4567888888888888 566677788888888888777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 003991          457 QARAALGESVEAIQDLSKALEF  478 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~  478 (781)
                      ..|.. ++...+..+|.+++..
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yr  160 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYR  160 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHH
Confidence            77766 7888888888888754

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.00  E-value=1.4  Score=28.20  Aligned_cols=32  Identities=34%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHH--HHHHHhhccC
Q 003991          620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD  651 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  651 (781)
                      +.++.+|..+...|++++|+..  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566667777777777777777  3366555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=88.80  E-value=28  Score=35.10  Aligned_cols=273  Identities=14%  Similarity=0.088  Sum_probs=163.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC--H
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQS--NPSA--------GEAWKRRGQARAALGESVEAIQDLSKALE---FEPNS--A  483 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~  483 (781)
                      +..+.......+.++++..+..++..  .|.+        ......++..+...|+..+-.......-.   .-+..  .
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            45556666677788899999888874  2222        23677899999999998776555544322   22111  1


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--ccc
Q 003991          484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL----D--RNF  550 (781)
Q Consensus       484 ~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~  550 (781)
                      .+...+..... ..+..+.-+..+..+++......      ..-..+...|...++|.+|+......+.-    +  +.-
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            22222222222 22344455566666665433222      22345788999999999999888776543    2  122


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHhhccCC---CCHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFSKA--YHLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIE  620 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~  620 (781)
                      .+++..-..+|+...+..+|...+..+-..     .|....+  -..=|.++....+|..|..+|-++++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            455666677888888888888888776533     2211111  22235666667899999999999987532   2233


Q ss_pred             H---HHHHHHHHHHhCCHHHHHHH--HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHH
Q 003991          621 C---LYLRASCYHAIGEYREAIKD--YDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (781)
Q Consensus       621 ~---~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  695 (781)
                      +   +-.+-.|-..++..++--..  -+.+++....+.++....+.++-++     .+..|+.|+..|..-+.-+|--+.
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR-----SLkdF~~AL~~yk~eL~~D~ivr~  322 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR-----SLKDFEKALADYKKELAEDPIVRS  322 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC-----cHHHHHHHHHHhHHHHhcChHHHH
Confidence            3   33344444556666654444  3455665555555444444433332     456788888888888877775554


Q ss_pred             H
Q 003991          696 Y  696 (781)
Q Consensus       696 ~  696 (781)
                      .
T Consensus       323 H  323 (411)
T KOG1463|consen  323 H  323 (411)
T ss_pred             H
Confidence            4

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=88.60  E-value=28  Score=34.81  Aligned_cols=54  Identities=15%  Similarity=0.035  Sum_probs=35.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      -....+..+..+-++...++++++|..+.++..++.--  ..-..+|...++++++
T Consensus       191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk  244 (556)
T KOG3807|consen  191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALK  244 (556)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence            34455666777777777788888888888777776532  2234556666666655

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.51  E-value=2.6  Score=41.19  Aligned_cols=66  Identities=18%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      ++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            344456667777777777777777777777777777777777777777777777777777777654

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.24  E-value=4.6  Score=40.36  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHcCCHHHHHHHH
Q 003991           50 RNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP---TLLQAYILKGCAFSALGRKEEALSVW  126 (781)
Q Consensus        50 g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~  126 (781)
                      -||..=..+|+-.....|+|..-.|||.+.-..--...++...+-... +|   +|.-.|-.+|..+.++|+.++|...|
T Consensus       310 tDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         310 TDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             CChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence            378877788887667779999999999998877767777776655444 43   45557778999999999999999999


Q ss_pred             HHHHhhccCChHHHHHHHHHH
Q 003991          127 EKGYEHALHQSADLKQFLELE  147 (781)
Q Consensus       127 ~~al~~~~~~~~~~~~~~~~~  147 (781)
                      .+|+++.++..+......+++
T Consensus       389 drAi~La~~~aer~~l~~r~~  409 (415)
T COG4941         389 DRAIALARNAAERAFLRQRLD  409 (415)
T ss_pred             HHHHHhcCChHHHHHHHHHHH
Confidence            999999988877655444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.24  E-value=5.5  Score=38.99  Aligned_cols=75  Identities=23%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (781)
                      ...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++..|+++.+-...+.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            334455567778888888888888888888888888888888888888888888888888888887765554443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.01  E-value=5.4  Score=37.18  Aligned_cols=72  Identities=21%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHH
Q 003991          567 SEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       567 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~  639 (781)
                      -++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++..+|+++.|.
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3456555555432211 45677777776665 45677777777777776433    4777778888888888777764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.72  E-value=45  Score=36.10  Aligned_cols=157  Identities=17%  Similarity=0.080  Sum_probs=76.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      .....++++++....... ++-|.- ......++..+.+.|-++.|+...+        ++...+.   +..+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe---LAl~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE---LALQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---HHHHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---HHHhcCCHHHH
Confidence            344567777766666411 111211 3345555666666676666665442        2333333   34566777776


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      .+...+     .+++..|..||......|+++-|.++|+++-.        +..+..+|.-.|+.+.=.+....+.....
T Consensus       338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            655432     23556777777777777777777777766421        34455556666666544444444433221


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          617 SNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                           +...-.++..+|+.++.++.+.+
T Consensus       405 -----~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 -----INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence                 12222344456666666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=87.66  E-value=38  Score=35.15  Aligned_cols=132  Identities=13%  Similarity=0.014  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C-CcH
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKEDP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----P-SAG  449 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p-~~~  449 (781)
                      +.....++.+.++.+|..+-+..+..-.         -.+..|+.+..+|...|+...-...+...+...     . ...
T Consensus       130 lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qa  209 (493)
T KOG2581|consen  130 LLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQA  209 (493)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHH
Confidence            3344455667888888887776654211         124567777777777887666555555544321     1 113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEF--EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~  516 (781)
                      .....+-+.|...+.|+.|-....+..--  ..  .....++.+|.+..-+++|..|.+++-.|+...|..
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            34455666777777788877776665411  11  114456677888888888888888888888888864

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.52  E-value=4.7  Score=47.45  Aligned_cols=115  Identities=20%  Similarity=0.111  Sum_probs=82.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 003991          559 QFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGL----G---QHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (781)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (781)
                      .++...+.|+.|+..|++.-...|..   .++.+..|..+..+    |   .+++|+..|++.- -.|.-|--|...|.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  561 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALV  561 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHH
Confidence            45556677888888888887777754   34566666665432    2   4677777777653 356667778889999


Q ss_pred             HHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHh
Q 003991          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS  674 (781)
Q Consensus       629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  674 (781)
                      |.++|++++-+++|.-|++..|++|..-...--.-|.+-.+.+...
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  607 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR  607 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876665555555555554433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.52  E-value=3.4  Score=31.76  Aligned_cols=56  Identities=11%  Similarity=-0.003  Sum_probs=35.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHH
Q 003991           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKAL   96 (781)
Q Consensus        41 ~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al   96 (781)
                      .+|-++|.+.+.++|+..++++++..+++..    +.-.+.+|...|+|++++.....=+
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777777777777777777633333    3345556777777777766554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.22  E-value=3.1  Score=42.73  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=42.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (781)
                      -|..++++++|..|.--|..++++..+-                  ..+-..+..+|...++.+-|+....+.+.++|.+
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            3666777777777777777777653211                  0111234444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      ..-+...|.++..+.+|.+|-+
T Consensus       262 frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.48  E-value=0.93  Score=26.50  Aligned_cols=23  Identities=22%  Similarity=0.057  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHH
Q 003991          621 CLYLRASCYHAIGEYREAIKDYD  643 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~  643 (781)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34555555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.43  E-value=2.8  Score=26.85  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCC
Q 003991          383 FRLSRGIAQVNEGKYASAISIFD--QILKEDP  412 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p  412 (781)
                      .++.+|..++.+|++++|+..|+  -+...++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44555555555566666655532  4444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=86.07  E-value=69  Score=36.60  Aligned_cols=247  Identities=9%  Similarity=-0.024  Sum_probs=155.9

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHH
Q 003991          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGE  450 (781)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~  450 (781)
                      ....+.+......+-..+...|++++-...-.++-++.|..+..|..-..-..   ..++-.++...|++++.. -....
T Consensus       106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~  184 (881)
T KOG0128|consen  106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVP  184 (881)
T ss_pred             hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccch
Confidence            33455566677777888889999988888888888888888888765544332   236777888888888863 34555


Q ss_pred             HHHHHHHHHHHc-------CCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991          451 AWKRRGQARAAL-------GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       451 ~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~  516 (781)
                      .|...+......       ++++.-...|.+++..-...       ...+..+-..|...-..++-+.++...+... -+
T Consensus       185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D  263 (881)
T KOG0128|consen  185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LD  263 (881)
T ss_pred             HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-ch
Confidence            666666665443       45677777788877643221       3344445555555555566677777666554 22


Q ss_pred             HHH----HHHHH--H-HHHHcCCHHHHHHHHHH-------HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          517 KSA----YTYLG--L-ALSSIGEYKKAEEAHLK-------AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       517 ~~~----~~~la--~-~~~~~g~~~~A~~~~~~-------al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      ..+    |....  . ......+++.|...+.+       .++..+.....|..+.......|+...-...+++++...+
T Consensus       264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~  343 (881)
T KOG0128|consen  264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMV  343 (881)
T ss_pred             hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcc
Confidence            211    11111  1 11234455555554333       3333444456667777777788888888888888888888


Q ss_pred             CCHHHHHHHHHHH-HHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          583 RFSKAYHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       583 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      .+...|...+... ..++-.+.+...+.+++...|-....|
T Consensus       344 ~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~  384 (881)
T KOG0128|consen  344 LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW  384 (881)
T ss_pred             ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence            8888888777654 344555666777777777776644443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.90  E-value=3.4  Score=40.42  Aligned_cols=58  Identities=22%  Similarity=0.209  Sum_probs=53.4

Q ss_pred             hhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (781)
Q Consensus        72 ~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  129 (781)
                      +...|..|...|.+.+|+..|++++.+||-+-..+..+-.++..+|+-=.|.+.|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4456678889999999999999999999999999999999999999999999999887

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.10  E-value=8.5  Score=38.25  Aligned_cols=64  Identities=20%  Similarity=0.146  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  478 (781)
                      ..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4566667777777777777777777777777777777777777777777777777777766553

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.04  E-value=1.7  Score=28.24  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +++..+|.+-...++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467778888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.96  E-value=4.8  Score=39.93  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      ..++..++..+...|+++.+...+++.+..+|-+...|..+-..|...|+...|+..|++.-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4456666777777777777777777777777777777777777777777777777777766553

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.69  E-value=2.9  Score=43.89  Aligned_cols=56  Identities=14%  Similarity=0.194  Sum_probs=45.6

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHhcC---------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991           74 NRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (781)
Q Consensus        74 ~rA~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  130 (781)
                      .+..++.-+|||..|++..+- |+++         +-++..+|..|-+|+.+++|.+|++.|..+|
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567778999999997654 4443         3466789999999999999999999999995

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.06  E-value=51  Score=33.35  Aligned_cols=185  Identities=13%  Similarity=0.010  Sum_probs=113.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (781)
                      -.++|+..-.-...+.|..++++-.++.+++...+...=...=-..+-+...+...        ...+-.+++...+.++
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~rA  282 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLDRA  282 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHHHH
Confidence            35788888888888999999988888777655332110000000000111112222        2233356677777777


Q ss_pred             HhhCc-ccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--C
Q 003991          544 IQLDR-NFLEAWGHLTQFYQD-----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--D  615 (781)
Q Consensus       544 l~~~~-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~  615 (781)
                      +.... .-....-.++.++..     .-++..-..+|.-.....|+ +.+-.+.+.......-.+.++...+.....  -
T Consensus       283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L  361 (415)
T COG4941         283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL  361 (415)
T ss_pred             HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence            76542 222222233333332     34666666777776666664 556666777776666677777777765543  2


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      ......+-..|.++.++|+.++|...|++++.+.++..+..+
T Consensus       362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~  403 (415)
T COG4941         362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF  403 (415)
T ss_pred             ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence            233456777899999999999999999999999988876433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.86  E-value=13  Score=34.79  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHcCCHHHH
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A  570 (781)
                      ++..+.+|..|. ..+.++++..+.+++++.+.    +++++..|+.++...|+++.|
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            334444443333 23444444444444443222    244444444444444444443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=83.46  E-value=21  Score=37.80  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHH--HHHHHHHHccCHHHHHHHHHHHHHh
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALI--GRGTARAFQRELEAAISDFTEAIQS  444 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~--~la~~~~~~g~~~~A~~~~~~al~~  444 (781)
                      .....+..++..++|..|...+..+...-|....  .+.  ..|..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4456788899999999999999999886343333  333  3455566788999999999988764

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.12  E-value=54  Score=32.93  Aligned_cols=141  Identities=13%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 003991          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (781)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (781)
                      +-....+..+..+-++....+++++|....++..++.--  ..-..+|...++++++...    ..+...+.....|...
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~  263 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQH  263 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccch
Confidence            334444555666667777888999998888887776532  2346678888888876532    2222222222223222


Q ss_pred             HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          501 AAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       501 ~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      +|..       ....+.  .+...++.+..++|+..+|++.++...+-.|-.  ..+.-++-..+....-|.+....+
T Consensus       264 da~~-------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  264 EAQL-------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             hhhh-------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211       111222  233457888888888888888888877766632  233444555555544444443333

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.59  E-value=4.6  Score=35.54  Aligned_cols=59  Identities=20%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             HhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 003991           63 LAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (781)
Q Consensus        63 i~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  121 (781)
                      +++-........+|...+..|+|.-|...++.++..+|++..+...++.++.++|.-.+
T Consensus        64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            34444445566788888999999999999999999999999999999999998886544

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=81.04  E-value=66  Score=34.65  Aligned_cols=168  Identities=15%  Similarity=0.048  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----DKENKSAYTYLGLA  526 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~la~~  526 (781)
                      ....+|++.+.+++|+.|...|+.+.+-..++ .+|..+|-++...     |+..+......    ..+.+..+      
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~-----alsl~~~~~~~~~k~~~~~~~~~------  277 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMA-----ALSLLMQGQSISAKIRKDEIEPY------  277 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHH-----HHHHHhcCCCCccccccccHHHH------
Confidence            34568888888888888888888877654333 2333333222111     01111000000    00011111      


Q ss_pred             HHHcCCHHHHHHHHHHHH----hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHH
Q 003991          527 LSSIGEYKKAEEAHLKAI----QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKR-----FSKAYHLRGLLL  595 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~-----~~~~~~~la~~~  595 (781)
                            ++.|...|.++-    .....-..+....+.++...+.+.+|...+-+....  ..+     ....+-..|.++
T Consensus       278 ------le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~  351 (414)
T PF12739_consen  278 ------LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY  351 (414)
T ss_pred             ------HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence                  233444444321    111122345555666666777776666655555433  211     222333444444


Q ss_pred             HHCCCHHHHHHHHHHhhcc-CC--C------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          596 HGLGQHKKAIKDLSSGLGI-DP--S------NIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~-~p--~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                                    ..+.. .|  .      .+.-+..-|.-|.+.|+...|..+|.+++....
T Consensus       352 --------------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~  401 (414)
T PF12739_consen  352 --------------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE  401 (414)
T ss_pred             --------------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence                          11111 11  1      122334456778889999999999998887654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.57  E-value=10  Score=39.08  Aligned_cols=86  Identities=13%  Similarity=0.016  Sum_probs=65.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcccchhh----hhhHHHHHHhhhCHHHHHHHHHHHHhc----C---C-CchhHHHHHHH
Q 003991           44 AKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQL----D---P-TLLQAYILKGC  111 (781)
Q Consensus        44 ~~~~~~g~~~~A~~~y~~ai~~~~~~~~----~~~rA~~~~~~~~~~~A~~~~~~al~~----~---p-~~~~a~~~lg~  111 (781)
                      ..+...|+++.|+++|.++=.-+.+...    +.|.-.+-+-+|+|.+....-.+|.+.    .   + -.++.....|.
T Consensus       158 dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agL  237 (466)
T KOG0686|consen  158 DHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGL  237 (466)
T ss_pred             HHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHH
Confidence            3456799999999999997666532222    556666777789999999998888875    1   0 12447888899


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 003991          112 AFSALGRKEEALSVWEKG  129 (781)
Q Consensus       112 ~~~~~g~~~~A~~~~~~a  129 (781)
                      +.+.+++|..|.+.|-.+
T Consensus       238 a~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  238 ANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999888777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	781
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-13
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-06
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-09
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-07
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		9e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-08
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		8e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E     
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 570 ALECLQQVLYIDKR 583
           A+E  Q+ L +D R
Sbjct: 122 AIEYYQKALELDPR 135

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L +D 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           R ++A+              +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 643 DAALDLE 649
             AL+L+
Sbjct: 127 QKALELD 133

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAWK  G A    G+  +AI+   KALE +PN+A   +  G   +K  D+  A+E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+   G A    G+Y+KA E + KA++LD N  +A
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + +KA+E  Q+ L +D   + A+             +KAI+  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
              L +DP+N +  Y R + Y+  G+Y++AI+DY  AL+L+ ++
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+  LG A    G+Y +A E + KA++LD N  EA
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+  +  G   +K  D++ A+E     ++LD  N  A+  LG A    G+Y +A E +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
            KA++LD N  EAW +L   Y    + ++A+E  Q+ L +D   ++A
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A+              +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L+ ++ E
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G  +  + + + AI  + + ++++P+  E   + G+    +G   +AI+ L K +  +  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA+  +  G  NF   +  AA++ L   + L+     AY  LGL   S+GE+ KA EA+ 
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQ 562
           K I +   F+ A+  +   Y+
Sbjct: 132 KTISIKPGFIRAYQSIGLAYE 152

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  +   G+   AI+   K L+ +PN+ + L + G         N A+E L   V LD  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +  AY  LG A   I E + A +A  +AI L+  + +A+  L   Y  +   +KA+E  +
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 576 QVLYIDKRFSKAY 588
           + + I   F +AY
Sbjct: 132 KTISIKPGFIRAY 144

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%)
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E  + Y  +G    + G++  A  A+ K ++ D N +E    L + Y D+     A+E L
Sbjct: 3   ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +D   ++AY             + AI  L   + ++    +  Y     Y ++GE
Sbjct: 63  KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Query: 635 YREAIKDYDAALDLE 649
           + +AI+ Y+  + ++
Sbjct: 123 HDKAIEAYEKTISIK 137

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 100/254 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q NP        
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G    ALG   EA     KA+E +PN A      G V     +   A+      V LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +    + A++  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +   F  AY              +A    ++ L + P++ + L   A+     G 
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 635 YREAIKDYDAALDL 648
             EA++ Y  AL++
Sbjct: 321 IEEAVRLYRKALEV 334

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE  PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++L   N  A+  LG A    G+Y +A E + KA++L  N  EA
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 111/282 (39%), Gaps = 31/282 (10%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
           GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNPS       
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
                 + E  + R QA  A G      AI  L K LE     A++   R     K  + 
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++    + H  Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Query: 560 FYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK-------------- 603
             +     E A E ++   Y D   ++                 K+              
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 112/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 66  RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 447 S-------------AGEAWKRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGI 491
           S             + E  + R QA  A G      AI  L K LE     A++   R  
Sbjct: 126 SENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCF 305
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 306 SKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETA 355

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A S+L +  EA++ ++K  E
Sbjct: 49  FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 112/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 447 S-------------AGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGI 491
           S             A E  + R QA  A    +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCF 282
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+AA
Sbjct: 283 SKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP      K +G      G+  +A++  ++A++  P  A +   R     K  +F  A++
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
              ++LD  N  A   LG A    G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   +  K +G      G+   A++  ++A++ +P +A +   R     K  +F  A++
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++LD +    Y      L ++ E+ KA+ A+  A+Q+D +  EA
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 202 KDPNFVRAYIRKATA 216

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98  LDPTLLQAYILKGCAFSALGRKEEAL 123
            DP  ++AYI K  A  A+     AL
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASAL 92

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E  
Sbjct: 1   GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 507 SACVKLD 513
              ++LD
Sbjct: 61  QKALELD 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	781
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-59
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-51
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-59
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-58
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-58
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-57
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-54
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-49
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-46
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-32
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-43
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-38
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-40
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-36
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-34
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-34
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-48
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-39
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-39
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-47
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-43
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-40
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-27
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-43
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-29
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-45
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-43
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-43
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-43
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-43
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-40
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-36
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-32
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-43
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-40
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-31
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-30
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-25
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-32
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-23
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-31
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-31
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-30
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-24
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-24
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-24
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-22
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-20
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-18
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-14
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-14
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-18
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	9e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	9e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-16
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-10
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	8e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-12
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-04
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	8e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	9e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-10
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-10
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	7e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-10
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-10
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	7e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	2e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-04
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	4e-04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	6e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  203 bits (520), Expect = 7e-59
 Identities = 62/302 (20%), Positives = 117/302 (38%), Gaps = 6/302 (1%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALY-TASKINS 678
            A  Y+  G    AI  Y  A++L+    + +      L+      +    Y TA ++  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 679 EF 680
             
Sbjct: 303 TH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  198 bits (506), Expect = 7e-57
 Identities = 71/301 (23%), Positives = 117/301 (38%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           + G      G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q N
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P         G    ALG   EA     KA+E +PN A      G V     +   A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
               V LD     AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +  
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             + A++  ++ + +   F  AY      L   G   +A    ++ L + P++ + L   
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
           A+     G   EA++ Y  AL++  +          VLQ     Q+ +  Y  A +I+  
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 680 F 680
           F
Sbjct: 372 F 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  198 bits (505), Expect = 1e-56
 Identities = 56/274 (20%), Positives = 106/274 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++   A V  G    A+  +   L+ +P         G        LE A + + +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  + + F+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      + L   +   +  L       G    A + + +AI+L  +F +A+ +L   
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  +  +A +C    L +    + + +    +    G  ++A++     L + P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                AS     G+ +EA+  Y  A+ +     +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  183 bits (466), Expect = 3e-51
 Identities = 47/254 (18%), Positives = 99/254 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
              R   G      G+   A + + + ++  P +  A    G     Q E+  AI  F +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A+  +P+  +A+   G           A+    +AL   PN A +      V ++    +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A++     ++L      AY  L  AL   G   +AE+ +  A++L     ++  +L   
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+      + I P+  +
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 621 CLYLRASCYHAIGE 634
                 +    + +
Sbjct: 375 AYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  A++  +  L          +       L   +       KA++  P    A+  
Sbjct: 121 VQAYVSALQY-NPDLYCVR-----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 109 KGCAFSALGRKEEALSVWEK 128
            GC F+A G    A+  +EK
Sbjct: 175 LGCVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + ++  A+R+        Y      N A         +  ++    ALQ +P L      
Sbjct: 87  IEHYRHALRL-KPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G    ALGR EEA + + K
Sbjct: 141 LGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           S    + AI+  + LLA++Y      N    Y +    +  I     AL+L P  +  YI
Sbjct: 52  SAHFSTLAIKQ-NPLLAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 108 LKGCAFSALGRKEEALSVWEK 128
               A  A G  E A+  +  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + +AI +       +Y     CN A    +           + AL+L PT   +   
Sbjct: 257 IDTYRRAIEL-QPHFPDAY-----CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 109 KGCAFSALGRKEEALSVWEK 128
                   G  EEA+ ++ K
Sbjct: 311 LANIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+R+     A S       N A    +    +  +R   KAL++ P    A+       
Sbjct: 296 TALRL-CPTHADSL-----NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G+ +EAL      Y+ A+
Sbjct: 350 QQQGKLQEAL----MHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 41  IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +P L +AY   G  +   G+ +EA+  +  
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ +     A  +      N A  Y +  L    I    +A++L P    AY     A 
Sbjct: 228 RALSL-SPNHAVVH-----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 114 SALGRKEEALSVWEK 128
              G   EA   +  
Sbjct: 282 KEKGSVAEAEDCYNT 296

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 6e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D     +Y      N      +  +    +    +AL L P     +    C +
Sbjct: 194 KAVTL-DPNFLDAY-----INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 114 SALGRKEEALSVWEK 128
              G  + A+  + +
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KAI       A ++      N    ++        I   +KA+ LDP  L AYI  G   
Sbjct: 160 KAIET-QPNFAVAW-----SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 114 SALGRKEEALSVWEK 128
                 + A++ + +
Sbjct: 214 KEARIFDRAVAAYLR 228

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  206 bits (527), Expect = 9e-59
 Identities = 38/301 (12%), Positives = 81/301 (26%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +       + + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  +
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 680 F 680
            
Sbjct: 445 Q 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  206 bits (525), Expect = 2e-58
 Identities = 38/300 (12%), Positives = 77/300 (25%), Gaps = 6/300 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L    +            L     +++    A    + 
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  205 bits (524), Expect = 2e-58
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++A +    +A    
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A    +   Q L 
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  E
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 680 F 680
            
Sbjct: 411 Q 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  203 bits (517), Expect = 2e-57
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L    +          Q L   Q+ + +   A  +  E
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 680 F 680
            
Sbjct: 377 Q 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  194 bits (496), Expect = 2e-54
 Identities = 42/301 (13%), Positives = 83/301 (27%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            RG     E  +A   ++    L   P    A+      +     ++  +    +A    
Sbjct: 43  KRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +          +   A +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
           +    A+   +  +     A  L    +          Q L   Q+ + +   A  +  +
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342

Query: 680 F 680
            
Sbjct: 343 Q 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  180 bits (459), Expect = 2e-49
 Identities = 40/300 (13%), Positives = 77/300 (25%), Gaps = 6/300 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +       +     +   P
Sbjct: 10  WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A       + AL      +  L +A    P     +          +     +  L
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  E   A         ++   +       +A  L    + A        Q L  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +    
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
               A+   +  +     A  L    +          Q L   Q+ + +   A  +  + 
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  173 bits (439), Expect = 1e-46
 Identities = 31/233 (13%), Positives = 59/233 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             ++ L  L Q   +  +   A    G     L      +      L    ++
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  130 bits (329), Expect = 3e-32
 Identities = 32/237 (13%), Positives = 62/237 (26%), Gaps = 6/237 (2%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
               +   ARA       A +     L+ +      + +RG V               A 
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           + L  E   A         ++   ++      +A  L    + A        Q L   ++
Sbjct: 65  LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 124

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            L  L Q   +      A          L   +  +  L    G+ P  +  +       
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
            A+   +  +     A  L    +          Q L   Q+ + +   A  +  + 
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 16/179 (8%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E+   +     A +       A E     +QLD   L          +    + +A+   
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAW 56

Query: 575 QQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +  L      +      A          L   ++ +  L    G+ P  +  +       
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEFCW 682
            A+   +  +     A  L  + +          Q L   Q  + +   A  +  E   
Sbjct: 117 QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +A   L      +       +       LE  + ++    +A  L P  + A       
Sbjct: 368 CQAHG-LTPEQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 113 FSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
             AL   +  L V  +          A+  +   +  LE +   L+    
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQDR 157
           A         AL   +  L V  +          A+  +   KQ LE ++ LL    Q  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 158 SVTCEY 163
            +T E 
Sbjct: 406 GLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       + +     LE  + ++    +A  L P  + A    G   
Sbjct: 267 QAHG-LTPQQVVAI-----ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+      KQ LE ++ LL  
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L    +A   L      +       +       LE  + ++    +A  L P  + A   
Sbjct: 92  LPVLCQAHG-LTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 109 KGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
                 AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L      + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A    G    AL   +  L V  +
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 233 QAHG-LTPQQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+  +   KQ LE ++ LL  
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           ++  I +       LE  + ++    +A  L P  + A         AL   +  L V  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 128 K------GYEHALHQSADLKQFLE-LEELLTA 152
           +          A+      KQ LE ++ LL  
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  194 bits (495), Expect = 4e-54
 Identities = 51/289 (17%), Positives = 100/289 (34%), Gaps = 13/289 (4%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             +   +   ++  K       +L   G  +  + +   A  D  +AI+  P    ++  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
                A   +S E      KAL+ + N++ + + RG +NF  ++++ A +D     +LD 
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN   Y  L        ++   E    +A +      E      +   D  + +KAL+  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 575 QQVLYIDKRFSKAYHLRGLLLH---------GLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
              + ++ +    Y     L+           +    +A   L     +DP + +     
Sbjct: 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEK---FVLQCLAFYQKEIALY 671
           A       +  EAI  ++ + DL     EK         A  Q+ I   
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  186 bits (475), Expect = 2e-51
 Identities = 47/340 (13%), Positives = 116/340 (34%), Gaps = 16/340 (4%)

Query: 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF-KWDMLKETSNEAKRNKKFCVTRISK 375
            +        +Y +S+ +D +  +   +  K S   +D   E+  +A R  +  + + ++
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 376 SKSISVDFRL---SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
            + +     +     GI +  +     A     + ++  P    + I      A + +  
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
              + F +A++ + +    +  RGQ    L    +A +D  KA E +P +     +   +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
            ++   F+      S   +   E      +    L+   ++ KA + +  AI+L+     
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

Query: 553 AWGHL---------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            +  +               + N  +A   L++   +D R  +A      +        +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           AI        +  +  E L      +    + ++ I+   
Sbjct: 468 AITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSDP 505

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  163 bits (414), Expect = 3e-43
 Identities = 48/350 (13%), Positives = 99/350 (28%), Gaps = 42/350 (12%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-------------EL 431
           L R + +    K        D                   +                 + 
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFE 479
           E   +++ E+ +++           +               A     E +   ++  + +
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
              A  L   GI  F   D   A ED+   ++L     ++Y Y+ L ++   +  +    
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNY 292

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA++LD N    + H  Q    L N ++A +   +   +D      Y     L +   
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           +        S      P   E     A       ++ +A+K YD A++LE          
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----- 407

Query: 660 CLAFYQKEIALYTASKINSEFCWFDIDG---------DIDPLFKEYWCKR 700
              +      +  A+ +       +             +DP  ++     
Sbjct: 408 --IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  148 bits (375), Expect = 4e-38
 Identities = 46/328 (14%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  AI  ++  L+     P              +L+  +   T+A++  P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKA---LEFEPNSADILHERGIVNFKFKDFNAAV 503
              +   RR  A   LG+  +A+ DLS      +F   S + + ER +            
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 504 EDLSACVKLDKENKSAYTYLGL-------------ALSSIGEYKKAEEAHLKAIQLDRNF 550
            D+        E  +                    +   I + +     + ++ + D+  
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 551 LEAWGHLTQ------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
           +    +L +            F +     E+ L+   +   + ++ + +    G+     
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-- 656
                A +D+   + + P  +      A       +  E    +D AL L+ ++   +  
Sbjct: 251 NDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309

Query: 657 ---VLQCLAFYQKEIALYT-ASKINSEF 680
              +   L  Y +    +  A +++ E 
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  131 bits (330), Expect = 3e-32
 Identities = 39/304 (12%), Positives = 84/304 (27%), Gaps = 34/304 (11%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           E   Y  AL  +G      ++ + AI  +  A++        +        ++G+  + +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVV 59

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYL--GLA 526
           +  +KALE +P+ + +L  R   N     F  A+ DLS   +  D  + S    L   L 
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 527 LSSIGEYKKAEEAHLKAIQLD-------------RNFLEAWGHLTQFYQDLANSEKALEC 573
             ++ + K+       A                 +            +  +   E     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 574 LQQVLYIDKRFSKAY------------HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             +    DK                               ++ +   +    +       
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF----VLQCLAFYQKEIALYT-ASKI 676
           L           +   A +D   A++L            ++       +    +  A K+
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299

Query: 677 NSEF 680
           +S  
Sbjct: 300 DSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N + CY  +   K V+    KAL+L P   +  + +  A   LG+  +A+        + 
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
               A ++  LE      A  +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSK 125

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+++ DS  +  Y      +R      L+ +    +D DKA +LDP  +  YI   C  
Sbjct: 295 KALKL-DSNNSSVY-----YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 114 SALGRKEEALSVWEK 128
               + ++  +++ +
Sbjct: 349 YRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV---------IRDCDKALQLD 99
           L+ +  AI + ++ L   Y        A    +  L                 +KA +LD
Sbjct: 392 LKQYDLAIEL-ENKLDGIY-----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LHQSADLKQFLELEELLTAAKQD 156
           P   QA I            +EA++++E+  + A  + +      F E  ++    + D
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                +   A   +   +     +      A   +            DKAL+LD      
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G     L   ++A   ++K
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            +++ KA   LD      Y        A    +            +A +  P   +    
Sbjct: 324 GKDFDKAKE-LDPENIFPY-----IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +     ++AL  ++ 
Sbjct: 378 FAEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +                D  KA++L P  + +YI      +      E  + ++K
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDK 295

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  189 bits (483), Expect = 4e-54
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ I  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                 A  +RG      G+  EA  D  K L+  P+  +       +            
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------------GLLLHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +                  L  
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  184 bits (470), Expect = 3e-52
 Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 31/299 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 447 SAGEAWKRRGQARAA---------------LGESVEAIQDLSKALEFEPNSADILHERGI 491
           S  E  +   Q   A                 +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222

Query: 552 EAWGHLTQF------------YQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLL 595
             + H  Q                      A    + V+  +        ++        
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
               +  +AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+AA +   +  +
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  156 bits (396), Expect = 4e-42
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 20/270 (7%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E     G+   A G+  +A+     A++ +P++    + R  V        AA+ DL+  
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF--------- 560
           + L  +  +A    G  L   G+  +AE+   K ++ + +  E     +Q          
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123

Query: 561 ------YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
                   D A+   A+  L ++L +    ++   LR       G+ +KAI DL +   +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIA 669
              N E  Y  ++ Y+ +G++  ++ +    L L+ D        K V +     +    
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243

Query: 670 LYTASKINSEFCWFDIDGDIDPLFKEYWCK 699
           L    +       ++     +P   EY  +
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVR 273

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  145 bits (369), Expect = 2e-38
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
           K+  +    S+ +   +   Y +AI+  D+IL+      E    R      + E   AIS
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ 484
           D   A +      EA+ +       LG+   ++ ++ + L+ + +               
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAH 540
            L E      +   +  A     + +K +         +   +    S   +  +A    
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            + +Q++ + + A     + Y      ++A++  +     ++   +           L Q
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 601 HKK 603
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  125 bits (315), Expect = 3e-31
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 15/199 (7%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            +   E G           A+    A V  D +N  AY        ++G+ K A     K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----- 597
            I L  +F  A              ++A +  ++VL  +    +       L+       
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 598 ----------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                        +  AI  L   L +   + E   LRA C+   GE R+AI D  AA  
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 648 LELDSMEKFVLQCLAFYQK 666
           L+ D+ E F      +YQ 
Sbjct: 183 LKSDNTEAFYKISTLYYQL 201

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  105 bits (265), Expect = 1e-24
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF- 427
            +   SK KS + +            G +  ++S   + LK D  +          +   
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 428 -----------QRELEAAISDFTEAIQSNPSAGE----AWKRRGQARAALGESVEAIQDL 472
                            A S +   +++ PS  E    + +R     +   + VEAI+  
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           S+ L+ EP++ + L +R       + ++ A++D  A  + ++ ++     L  A   + +
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 533 YKK 535
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100
           L     ++ A    +S++        Y ++       C+S+ E     IR C + LQ++P
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303

Query: 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
             + A   +  A+      +EA+  +E   EH
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K + L      A + 
Sbjct: 23  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAA 153
           +G      G+ +EA   ++K        +      + L +  E++ L + A
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135
           A+      +  LG  E +LS         L 
Sbjct: 190 AFYKISTLYYQLGDHELSLSE----VRECLK 216

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAKLC-SLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++   L        +A                     S L ++ E+Q + ++A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 182

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           ++R  S+ +++ +     +       +RA  Y   E++   I+D + A + +    Q   
Sbjct: 291 AIRICSEVLQM-EPDNVNAL-----KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 108 LKGCAFSALGRKEE 121
               A   L + ++
Sbjct: 345 GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 46  LCSLRNWSKAIRILDSLLA---QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
                   KAI  L +       + E       +  Y QL  H+  + +  + L+LD   
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 103 LQAYILKGCAFSALGRKEEALSVWEKG-YEHALHQSADLKQFLELE 147
            + +             E A  +   G Y  A    +  +  ++ E
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT---SKYESVMKTE 264

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  194 bits (495), Expect = 5e-54
 Identities = 57/346 (16%), Positives = 107/346 (30%), Gaps = 22/346 (6%)

Query: 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIF 404
            S L           + A       +       +    + ++  +   +   Y S +S  
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                       AL   G     +  L  A     E+I  +P+   ++       A    
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKEN 291

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S E  +   KA++  P      + RG + F  +D+  A ED      L+ EN   Y  L 
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
             L   G++ ++E    +         E      +   D  + + A++       +++  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

Query: 585 SKAYHLRGLLLH----------------GLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            K +   G L+                    +   AIK L+    +DP + +     A  
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKF---VLQCLAFYQKEIALY 671
              + +  EAI+ ++ +  L     EK         A  QK +   
Sbjct: 472 KLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  176 bits (447), Expect = 2e-47
 Identities = 38/277 (13%), Positives = 83/277 (29%), Gaps = 19/277 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +     A  +  + +   P    + I      A +   +     F +A+  NP
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +  RGQ    L +   A +D  KA    P +     +   + +K   F  +    
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--------- 557
           +             T+    L+  G++  A + +  A +L+    +    +         
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 558 -------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
                       D      A++ L +   +D R  +A      L   + +  +AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +  +  E L      +    + ++ ++       
Sbjct: 488 SAILARTMDEKLQATT--FAEAAKIQKRLRADPIISA 522

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  158 bits (401), Expect = 2e-41
 Identities = 55/319 (17%), Positives = 107/319 (33%), Gaps = 24/319 (7%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
           +    AS   IFD  L+   +   +              + A +  ++A+Q   SA +  
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSS------------NYDTAYALLSDALQRLYSATDEG 210

Query: 453 --KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
                     +       +   +       N+A  L   GI +F   +   A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
            L     ++Y +L L L+     ++  +   KA+ L+  +   + H  Q Y  L + + A
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
            E  Q+   ++      Y     LL+  G+  ++    +      P+  E     A    
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

Query: 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG--- 687
             G++  AIK YD A  LE    +  V       +  I    +S+  ++      +    
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 688 ------DIDPLFKEYWCKR 700
                 ++DP  ++     
Sbjct: 450 LLTKACELDPRSEQAKIGL 468

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  157 bits (399), Expect = 4e-41
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 21/314 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        +  AI  +   ++ DP  P              +LE  I   T+A++  P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSADILHERGIVNFKFKDFN-AA 502
              +A  RR  A  +LG   +A+ DLS      +F+  S + + ER +     K  N   
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAW 554
            +D     ++   N S  ++ G+  S +          Y  A      A+Q   +  +  
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 555 GHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
             +      +        L        + +  + A    G+          A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKE 667
            + P         A         +E  K +  A+DL  +    +     +   L  Y+  
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 668 IALYT-ASKINSEF 680
              +  A  +N E 
Sbjct: 330 KEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  154 bits (391), Expect = 5e-40
 Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 25/263 (9%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
             +   ++         F + +  +P YP     RG      ++ + A  DF +A   NP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                + +        G+  E+    ++     P   ++      +     DF+ A++  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 507 SACVKLDKENKSAYTYLGLALS----------------SIGEYKKAEEAHLKAIQLDRNF 550
               +L++  +  +  +G  +                    ++  A +   KA +LD   
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
            +A   L Q    +   ++A+E  +    + +   +             + +K ++    
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLR---- 515

Query: 611 GLGIDPSNIECLYLRASCYHAIG 633
               DP     + L  + Y A G
Sbjct: 516 ---ADPIISAKMELTLARYRAKG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  142 bits (361), Expect = 3e-36
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 23/311 (7%)

Query: 395 GKYASAISIFDQILK----EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           G + +      Q+      +   Y   L  RG      +    AI  +  AI+ +P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C 509
            +        + G+  + I+  +KALE +P+ +  L  R   N    +F  A+ DLS   
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 510 VKLDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-- 564
           +  D +  S    L   L+        +   +   +  Q+  +          F   L  
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180

Query: 565 ------ANSEKALECLQQVLYIDKRFSKAYHL--RGLLLHGLGQHKKAIKDLSSGLGIDP 616
                 +N + A   L   L      +   +L    LL      +   +   +    +  
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF----VLQCLAFYQKEIALYT 672
           +    L      +       +A      +++L             L      Q+    + 
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQ 300

Query: 673 -ASKINSEFCW 682
            A  +N E+  
Sbjct: 301 KAVDLNPEYPP 311

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  141 bits (357), Expect = 1e-35
 Identities = 50/320 (15%), Positives = 100/320 (31%), Gaps = 21/320 (6%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTAR-AFQRELEAAIS 436
               L R  A  + G +  A+     +           E ++ R   + A +   E    
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHE 488
           D     Q  PS        G   + L             A   LS AL+   ++ D  + 
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 489 RGIVNFK--FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                       +++ +   +    L +    A  Y G+          A+    ++I L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                 ++  L     D  NS++  +  Q+ + ++  +   Y+ RG +   L  +K A +
Sbjct: 273 HPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCL 661
           D      ++P N+      A   +  G++ E+   ++          E       +L   
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391

Query: 662 AFYQKEIALYT-ASKINSEF 680
             +   I  Y  A ++    
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  138 bits (350), Expect = 1e-34
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        Y +A   F +    +P      I        Q +   + + F E     P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF---------- 496
           +  E      +     G+   AI+    A   E     I    G +  K           
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 497 ------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
                 + FNAA++ L+   +LD  ++ A   L      + +  +A E    +  L R  
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
            E     T  + + A  +K L     +    +     Y  +G+L
Sbjct: 496 DEKLQATT--FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 5e-10
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  AI + D      Y      N + CY      + VI    KAL++ P   +A + 
Sbjct: 45  IKYYQYAIEL-DPNEPVFY-----SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98

Query: 109 KGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVS 166
           +  A  +LG   +A+        +     A ++  LE      A K   +     E   S
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 167 NSMSSLTVSESGLNANDKMSETSENHNKSD 196
             + S T   S     D   E S  +  S+
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + +     +Y      +R   Y  L+ +K+   D  KA  L+P  +  YI   C  
Sbjct: 301 KAVDL-NPEYPPTY-----YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 114 SALGRKEEALSVWEK 128
              G+  E+ + + +
Sbjct: 355 YKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                N   A  +L   +            A   +  E  +   +   KA+ L+P     
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +  L   + A   ++K
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             ++ KA  + +      Y        A    +           ++     PTL +    
Sbjct: 330 KEDFQKAQSL-NPENVYPY-----IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +  G  + A+  ++ 
Sbjct: 384 FAEILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 54  KAIRI----------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
            A R+          +  L+ ++  +    ++       E     I+   KA +LDP   
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           QA I        + + +EA+ ++E 
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +              +++ L PT   +YI      +     +E    ++K
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 35  SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC---NRAFCYSQLELHKHVIRD 91
               + +E++ + +  N+  A  +L   L + Y   D              +++  ++  
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                 L      A    G          +A  + ++
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  189 bits (483), Expect = 4e-53
 Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ IQ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
                 A  +RG      G+  EA  D  K L+  P+  +                L  +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL------------LHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +     +            L  
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  164 bits (417), Expect = 4e-44
 Identities = 47/306 (15%), Positives = 112/306 (36%), Gaps = 33/306 (10%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTAR 425
              RL RG   + +GK   A   F ++LK +P   E                L  +    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------------LSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            R         + +AI+D  +    + ++ +           + + ++  +DY   L ++
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK--RDYYKILGVK 391

Query: 650 LDSMEK 655
            ++ ++
Sbjct: 392 RNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  164 bits (417), Expect = 4e-44
 Identities = 51/307 (16%), Positives = 108/307 (35%), Gaps = 31/307 (10%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M+       G     +     +++D            E     G+   A G+  +A+   
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQF 49

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
             A++ +P++    + R  V        AA+ DL+  ++L  +  +A    G  L   G+
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQF---------------YQDLANSEKALECLQQV 577
             +AE+   K ++ + +  E     +Q                     +   A+  L ++
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           L +    ++   LR       G+ +KAI DL +   +   N E  Y  ++ Y+ +G++  
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229

Query: 638 AIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692
           ++ +    L L+ D        K V +     +    L    +       ++     +P 
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289

Query: 693 FKEYWCK 699
             EY  +
Sbjct: 290 IAEYTVR 296

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  135 bits (342), Expect = 3e-34
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 45/343 (13%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLK--ETSNEAKRNKKF-----CVTRISKSKS 378
           + + K   S+   ++  E++S+L    +M +    +  A  +  +      + +I +   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438
              + R  R    + EG+   AIS      K      EA     T      + E ++S+ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 439 TEAIQSNPSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEFEPNSADIL 486
            E ++ +      +    Q +               G   +A       ++ EP+ A+  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 487 HE----RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                       K +    A+   S  ++++ +N +A      A      Y +A + +  
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLG 599
           A + + N  +    L +  + L  S+K        +  + +     KAY    L  H   
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH--- 411

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                           P N +    +        +   A +  
Sbjct: 412 ----------------PDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                  + K   AI +  ++L+ +P    AL  R  A   +   + AI D+  A + N 
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSK------------------ALEFEPNSADILHE 488
           +  +  +   +A+  L +S +                         AL++ P++     E
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
           +     KF D  AA E LS     D E +  +
Sbjct: 421 KKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCS----------LRNWSKAIRILD 60
           Y+L     ++ E+ E +++D           ++ KL               ++ A    +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 61  SLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115
           S++        Y ++       C+S+ E     IR C + LQ++P  + A   +  A+  
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341

Query: 116 LGRKEEALSVWEKGYEH 132
               +EA+  +E   EH
Sbjct: 342 EEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K +QL      A + 
Sbjct: 46  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAAKQDR 157
           +G      G+ +EA   ++K               + L +  E++ L + A    
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A+      +  LG  E +LS   +
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98
           A  +  K+          +   S L +S E+Q + ++A        +   I   DK L++
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
                +   L+   F   G   +A+S      + A  
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISD----LKAASK 205

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 8   DSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY 67
            + +        I  +D+++ V    A     R E           KAI  L +      
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKN 208

Query: 68  EIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126
           +  +     +  Y QL  H+  + +  + L+LD    + +             E A  + 
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 127 EKG-YEHALHQSADLKQFLELE 147
             G Y  A    +  +  ++ E
Sbjct: 269 RDGRYTDAT---SKYESVMKTE 287

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  171 bits (435), Expect = 2e-48
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 2/240 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G       ++  AI  +++  +        L  R  A   + E E AIS   +A++   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +K   ++ A +G +   + DL K +E+   S    H    +  K ++    ++  
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKA 128

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
            A   ++ E        G    +  ++  A +A+ + I+        + +       L +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             +A+    + +  D  F +AY  +      + ++  A++ L +    D         R 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  170 bits (434), Expect = 2e-48
 Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 9/260 (3%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               +     G      R+ + AI  + +A + +         R  A    GE   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+ A+E                 +  +    + DL   ++  +++ + +      L+ + 
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLR 119

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
             +K  +       ++    E      + Y   ++   A++   +++      ++ Y  R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              L  L    +AI D +  +  DP+ +     +A+   A+ EY  A++  DAA   + +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 652 SMEKFVLQCLAFYQKEIALY 671
                         +EI   
Sbjct: 240 VNN-------GSSAREIDQL 252

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  157 bits (399), Expect = 1e-43
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R  A+  +G+Y +AIS  +  +++             + A        + D  + I+   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            +     R       L  + + ++         P  A+     G   F   D+  AV+  
Sbjct: 104 KS-LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  +K   E+   Y+    AL+ +  + +A     KAI+ D NF+ A+         +  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              ALE L      D   +     R +        +
Sbjct: 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI 
Sbjct: 159 VKAYTEMIKR-APEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212

Query: 109 KGCAFSALGRKEEALSVWEKGYEH 132
           K  A  A+     AL   +     
Sbjct: 213 KATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           NRA    +   ++  I   + A++    +   Y +   +F+ +G     L   +K
Sbjct: 43  NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L +  K I      L            A   ++L   +  ++  +    ++P   +   L
Sbjct: 92  LGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +G  +        A+  + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L+       + +   A+             Y       + ++   + ++  P   + Y  
Sbjct: 125 LKKAEAEAYV-NPEKAEEA-----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +  A + L    EA++   K
Sbjct: 179 RAAALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +   + A+      +   Y        +  ++++    H + D  K ++     L  +  
Sbjct: 58  ISTLNDAVEQ-GREMRADY-----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR- 110

Query: 109 KGCAFSALGRKEEALSVWEK 128
                + L   E+ L   E 
Sbjct: 111 TADILTKLRNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + + +KAI   D    ++Y       +A     ++ +   +   D A   D  +      
Sbjct: 193 IADCNKAIEK-DPNFVRAY-----IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 109 KGCAFSALGRKE 120
           +          +
Sbjct: 247 REIDQLYYKASQ 258

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  171 bits (435), Expect = 9e-48
 Identities = 42/279 (15%), Positives = 83/279 (29%), Gaps = 10/279 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++D  +S          +     +   ++++DP +   L           +         
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           + +   PS   +W   G     +G   E A + LSKA   E          G       +
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
            + A+       +L K       Y+GL        K AE    +A+ +          + 
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 559 QFYQDLANSEKALECLQQVLYIDK---------RFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                    + A +     L   K         ++    +  G +   L ++ +A+    
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L + P N          +  +G +  A+  +  AL L
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  147 bits (372), Expect = 4e-39
 Identities = 42/265 (15%), Positives = 81/265 (30%), Gaps = 11/265 (4%)

Query: 395 GKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y     ++  + +       + ++       +  + +      +  ++ +P       
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSACVKL 512
                   L ++ E      K ++  P++       G            A   LS    L
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           +K    A+   G + +   E+ +A  A+  A QL +       ++   Y    NS+ A  
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---------NIECLY 623
              Q L I        H  G++    G+ K A K     L    +             L 
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

Query: 624 LRASCYHAIGEYREAIKDYDAALDL 648
                   + +Y EA+  +  AL L
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  146 bits (370), Expect = 8e-39
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 29/250 (11%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K   A     +    +  Y  A I  G + A + E + A++ +  A Q            
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G        S  A +  S+AL   P    ++HE G+V F+  ++  A +           
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW---------- 215

Query: 516 NKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
                            +  A E    +        +     +L    + L    +AL+ 
Sbjct: 216 -----------------FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
            +Q L +  + +  Y   G +   +G  + A+    + LG+   +   + +   C     
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318

Query: 634 EYREAIKDYD 643
              EA    D
Sbjct: 319 GDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 10/88 (11%), Positives = 25/88 (28%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
           ++ +   + + +   +             +     K   K  S  +  DP +  CL +  
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSME 654
                + +  E        +DL   +  
Sbjct: 64  GTLVELNKANELFYLSHKLVDLYPSNPV 91

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQL-ELHKHVIRDCDKALQL 98
           L  L   ++   +   L+        S+           Y  +   ++H  R   KA  L
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSW-----FAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           + T   A+I  G +F+     ++A++     Y  A 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAA----YFTAA 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                ++    ++   ++ +  +    +        +L     +     K + L P+   
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 105 AYILKGCAFSALGRK-EEALSVWEK 128
           ++   GC +  +G K E A     K
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
              L+ +++A+      L              + +S +   ++ +     AL L      
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

Query: 105 AYILKGCAFSALGRKEEAL 123
           +  + G          EA 
Sbjct: 306 SVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 9/75 (12%), Positives = 21/75 (28%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
               I +S+      +  + + A  +      K   +     ++ DP       +     
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 114 SALGRKEEALSVWEK 128
             L +  E   +  K
Sbjct: 67  VELNKANELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R  SKA   L+     ++           ++    H   +     A QL        + 
Sbjct: 111 RRYLSKATT-LEKTYGPAW-----IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G  +      + A    E+ +  AL
Sbjct: 165 IGLEYGLTNNSKLA----ERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
            + +  A+  + ++  +    +      N      +L+ +   +    +AL L P     
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           Y   G   S +G  E A+      +  AL
Sbjct: 273 YSAIGYIHSLMGNFENAVDY----FHTAL 297

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  168 bits (428), Expect = 2e-47
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD- 437
           ++ D              YA AI +F+++  +    P     R        + + A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 438 --FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
             +   + +  +    ++  G+     G+   AIQ    A++ +    D+  + G   + 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
             +F  A++ +   ++    +   +  LG A     EY KA+ + +K ++L  N    + 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 556 HLTQFYQDLANSEK---ALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKA 604
              +         K   A    ++++ +             +A               KA
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
                + L +DP+N + +            +
Sbjct: 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  157 bits (400), Expect = 1e-43
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 14/250 (5%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M  +                 AI  F +      ++   + RR      L +   A +D+
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 473 S---KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
                 +      +      G +  K    + A++   A V  D      Y  +G    +
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G +  A +   K I+      + +  L Q Y       KA     +VL +       Y 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 590 LRGLLLHGLGQHKK---AIKDLSSGLGIDPSN--------IECLYLRASCYHAIGEYREA 638
            R           K   A       + +            IE     A  Y    +  +A
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 639 IKDYDAALDL 648
              +   L L
Sbjct: 241 DAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  149 bits (379), Expect = 1e-40
 Identities = 35/213 (16%), Positives = 78/213 (36%), Gaps = 6/213 (2%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   R            EAI+  +K    + NS  I + R +  ++   ++ A +D+   
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 510 VK---LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                  K   + + Y G  L   G+   A + +  A+  D   L+ +G +  ++ +  N
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
              A++ +++ +       K ++  G   +   ++ KA       L + P+       RA
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 627 SCYHAIG---EYREAIKDYDAALDLELDSMEKF 656
               A     +   A   Y+  +++      K+
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  109 bits (275), Expect = 9e-27
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 9/174 (5%)

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL---E 572
           N          L     Y +A E   K      N    +      Y +LA  + A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632
                +   K  S  +   G +L   GQ   AI+   + +  D + ++      S ++  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

Query: 633 GEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           G +  AI+  +  +       + F            Y K  + +    ++    
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+   D+     Y           +         I+  +K ++   T  + +   G A+
Sbjct: 99  AAVDR-DTTRLDMY-----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152

Query: 114 SALGRKEEALSVWEK 128
                  +A S + K
Sbjct: 153 YYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
             +       +  +             +       I+    A+  D T L  Y   G  F
Sbjct: 65  SKVNA-TKAKSADF-----EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 114 SALGRKEEALSVWEK 128
              G    A+   EK
Sbjct: 119 YNKGNFPLAIQYMEK 133

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    +   +   I   +K           Y  +   +  L + + A    E  Y   
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFSK 66

Query: 134 L 134
           +
Sbjct: 67  V 67

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCD---KALQLDPT 101
           L    N+++AI + + L A+ Y    I   RA CY +L  +    +D +     +     
Sbjct: 13  LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72

Query: 102 LLQAYILKGCAFSALGRKEEALSVWEK 128
               +   G      G+   A+  ++ 
Sbjct: 73  KSADFEYYGKILMKKGQDSLAIQQYQA 99

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  176 bits (447), Expect = 4e-47
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 7/301 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414
           L +TS+E +  +             S D  L +        ++   ++I  +IL+ DP  
Sbjct: 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +       +     E         + +  +P     W   G     + +  EA +  SK
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +   +P                 + + A+   +   +L +     Y +LG+    +G   
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKA 587
            A E    +  L +        L     + ++ + A+   Q  L +       +K ++  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
           +   G     L  +  AI  L+ GL +  ++       A  Y        AI     +L 
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

Query: 648 L 648
           +
Sbjct: 579 I 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  166 bits (421), Expect = 1e-43
 Identities = 38/293 (12%), Positives = 87/293 (29%), Gaps = 7/293 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISI-FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
            +L        + ++   + + +    KED  +  +L      +    +      D+  +
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           I     + +    +          ++ +   +K LE +P + D+         +  + N 
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLT 558
                +  V    E    +  +G+    + +  +A     K+  +D  F  AW    H  
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS- 416

Query: 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             +      ++A+        + +     Y   G+    LG    A + L S   +   +
Sbjct: 417 --FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
              L           + + AI  +  AL L   +          +     A  
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  165 bits (418), Expect = 3e-43
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 7/270 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
              + + +          +   +       + L+ +      +      ++  T+ ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + +     +    GE  +     +  ++  P  A      GI        + A   
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            S    +D +   A+     + +  GE+ +A  A+  A +L +     +  L   +  L 
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL-------SSGLGIDPSN 618
           N   A E LQ    + +      +  G++       + AI                +   
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648
                     Y  +  Y  AI   +  L L
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL 545

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  157 bits (399), Expect = 8e-41
 Identities = 39/299 (13%), Positives = 97/299 (32%), Gaps = 5/299 (1%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRL--SRGIAQVNEGKYASAISIFDQILKEDP 412
           L   +N  ++++K     + +   I ++  +   RG    N   +  A   + + L  D 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 413 MYPEAL--IGRGTARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
              EA   +          E +  +  +++   + + +   +       + +  + +   
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +D   ++     S+D+L  +    F    F   +   +  +++D  N   Y     +L  
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            GE  K        +         W  +  +Y  +    +A     +   +D +F  A+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                    G+H +AI   ++   +              +  +G    A +   ++  L
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  122 bits (307), Expect = 4e-29
 Identities = 56/379 (14%), Positives = 109/379 (28%), Gaps = 27/379 (7%)

Query: 291 ASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF 350
              +       N    +     S    L ++ +   S+ K   + N  S S E   +L  
Sbjct: 32  TPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWR 91

Query: 351 KWDMLKETSNEAKRNKKFCVTR-ISKSKSISVDFRLSRGIAQVNEGKYASAISIFD---- 405
              ++++    A     F   + +  + + +  F L         G YA A  +      
Sbjct: 92  HDALMQQQYKCAA----FVGEKVLDITGNPNDAFWL--AQVYCCTGDYARAKCLLTKEDL 145

Query: 406 ------------QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
                         L +   +  AL   G    F+++ + A     +       A     
Sbjct: 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA-SMCY 204

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE---DLSACV 510
            RGQ    L     A +   +AL  +    +   +    +    D    +    + S   
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
           K D     +   L L  +S  +  +  E +L +I       +            +     
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
           L    ++L ID      Y L    LH  G+  K     +  +   P            Y 
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384

Query: 631 AIGEYREAIKDYDAALDLE 649
            + +  EA + +  +  ++
Sbjct: 385 CVNKISEARRYFSKSSTMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  111 bits (278), Expect = 1e-25
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +   EG++  AIS +    +         +  G        +  A      +     
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------PNSADILHERGIVNFKFKDF 499
                    G       +   AI     AL             A      G    K K +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +AA++ L+  + L   + + +T + L          A     +++ +  N + A   L +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

Query: 560 FYQD 563
             ++
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           L      +K   I + L+      A ++           Y  +       R   K+  +D
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTW-----LAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           P    A+I    +F+  G  ++A+S     Y  A 
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISA----YTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)

Query: 5   KLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64
            L  ++       +   +    +      +  +  + +   L     +   + I   +L 
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILE 333

Query: 65  QS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
              Y +           +      +    +  +   P     ++  G  +  + +  EA 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 124 SVWEK 128
             + K
Sbjct: 394 RYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 54  KAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+ ++    +          N    Y +L+++   I   ++ L L       +      
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

Query: 113 FSALGRKEEALSVWEK 128
           +        A++   +
Sbjct: 560 YLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R +SK+   +D     ++        A  ++    H   I     A +L       Y+ 
Sbjct: 393 RRYFSKSST-MDPQFGPAW-----IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446

Query: 109 KGCAFSALGRKEEALSVWEKGYE 131
            G     LG    A    +  Y 
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYA 469

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  161 bits (411), Expect = 2e-45
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 3/242 (1%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  +  +      M     +GRG+      + E A   FT+AI+ N      + 
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
                 +++ E   A+    KALE + ++A   +  G V    + +  A +     ++  
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            EN   +  LG  L  + + K A     +A++L+ N  EA         +    ++AL  
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              V   D   + A++  G+        +KA++ L   + I P ++  L+ +    H   
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

Query: 634 EY 635
            +
Sbjct: 242 HH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  157 bits (400), Expect = 6e-44
 Identities = 50/215 (23%), Positives = 84/215 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +       G Y  A   F + ++E+       I      +   ELE A++ + +A++ + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           SA  A+   G          EA     KAL     + D+ +  G V  K +    A+  L
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              V+L++ +  A    G+ L++ G   +A        + D    +A+ +    Y    N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            EKALE L + + I      A H + LL H    H
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  154 bits (393), Expect = 6e-43
 Identities = 42/245 (17%), Positives = 90/245 (36%), Gaps = 11/245 (4%)

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARA----ALGESVEAIQDLSKALEFEPNSADIL 486
           + ++      +    P         G  +       G+  +A +  +KA+E     A   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                +     +   A+      ++LD    +AY   G        YK+A++   KA++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                + +  L      L   + AL  LQ+ + +++  ++A    G+ L   G   +A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
             ++    DP + +  Y     Y       +A++  D A+D++ D M        A + K
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML-------ALHAK 233

Query: 667 EIALY 671
           ++  +
Sbjct: 234 KLLGH 238

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  + KA+ + DS  A +Y           Y   E++K      +KAL+        + +
Sbjct: 77  LAFYDKALEL-DSSAATAY-----YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G     L + + AL       + A+
Sbjct: 131 LGTVLVKLEQPKLAL----PYLQRAV 152

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + +    ++           C +   +    +       + DP    A+   G  +
Sbjct: 150 RAVEL-NENDTEAR-----FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

Query: 114 SALGRKEEALSVWEK 128
           +    +E+AL + +K
Sbjct: 204 AYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           +   ++KAI   +   A  Y      N A   S +   +  +   DKAL+LD +   AY 
Sbjct: 42  AAEAFTKAIEE-NKEDAIPY-----INFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 108 LKGCAFSALGRKEEALSVWEK 128
             G  +      +EA  ++EK
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 9e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+R         +             +LE  K  +    +A++L+    +A    G   
Sbjct: 116 KALRA-GMENGDLF-----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 114 SALGRKEEALSVWEK 128
           +  G  +EALS +  
Sbjct: 170 ANEGMLDEALSQFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            +  ++      +        +    S+   ++       KA++ +      YI      
Sbjct: 10  HSSGLVPRGSHMASMTGG--QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 114 SALGRKEEALSVWEK 128
           S++   E AL+ ++K
Sbjct: 68  SSVNELERALAFYDK 82

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  ++      D   A ++      N    Y+  E  +  +   DKA+ + P  + A   
Sbjct: 179 LSQFAAVTEQ-DPGHADAF-----YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 109 KGCAFSALGR 118
           K         
Sbjct: 233 KKLLGHHHHH 242

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  174 bits (443), Expect = 3e-45
 Identities = 37/301 (12%), Positives = 80/301 (26%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  +
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733

Query: 680 F 680
            
Sbjct: 734 Q 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  172 bits (438), Expect = 1e-44
 Identities = 37/293 (12%), Positives = 77/293 (26%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P     +          +     +  
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPV 655

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 656 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P+ +  +   
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFV-----LQCLAFYQKEIALYTA 673
                A+   +  +        L L  +          Q L   Q+ + +   
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ 828

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  169 bits (430), Expect = 1e-43
 Identities = 37/292 (12%), Positives = 76/292 (26%), Gaps = 5/292 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +    A         ++   ++      +A  L    + A        Q L 
Sbjct: 588 LCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+    +  +   
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYT 672
                A+   +  +     A  L  D +          Q L   Q+ + +  
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  169 bits (428), Expect = 2e-43
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 7/302 (2%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG     E  +AS  ++    L   P    A+      +     ++  +    +A   
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+   A       + AL      +  L +A    P+    +          +     + 
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L     L  +   A    G    ++   ++      +A  L  + + A        Q L
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
              ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +  
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT-ASKINS 678
                 A+   +  +     A  L  D +          Q L   Q+ + +      +  
Sbjct: 402 NGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTP 460

Query: 679 EF 680
             
Sbjct: 461 AQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  168 bits (426), Expect = 3e-43
 Identities = 35/293 (11%), Positives = 74/293 (25%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L  + + A        Q L 
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYTA 673
                A+   +  +     A  L    +          Q L   Q+ + +   
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQ 794

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  166 bits (422), Expect = 9e-43
 Identities = 39/301 (12%), Positives = 82/301 (27%), Gaps = 7/301 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  Q         + +  Q     P    A+      +     ++  +    +     
Sbjct: 401 SNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL    + +  L +A    P+    +                +  
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L  + + A        Q L 
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 579

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P+ +  +   
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  D +          Q L   Q+ + +   A  +  E
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 680 F 680
            
Sbjct: 700 Q 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  159 bits (403), Expect = 2e-40
 Identities = 36/294 (12%), Positives = 79/294 (26%), Gaps = 5/294 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q      +   A+      +     ++  +    +A    
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +E   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+  + +  +   
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFV-----LQCLAFYQKEIALYTAS 674
                A+   +  +     A  L  D +          Q L   Q+ + +    
Sbjct: 810 IGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQD 863

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  153 bits (387), Expect = 2e-38
 Identities = 39/299 (13%), Positives = 80/299 (26%), Gaps = 5/299 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +    +  +     +   P
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A       + AL      +  L +A    P     +          +     +  L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  +   A         ++   ++      +A  L  + + A        Q L  
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSME----KFVLQCLAFYQKEIALYT-ASKINSEF 680
               A+   +  +     A  L  D +         Q L   Q+ + +   A  +  + 
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  150 bits (381), Expect = 1e-37
 Identities = 34/293 (11%), Positives = 72/293 (24%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD-----SMEKFVLQCLAFYQKEIALYTA 673
                A+   +  +        L  D     +      Q L   Q+ + +   
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQ 896

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  147 bits (371), Expect = 2e-36
 Identities = 32/266 (12%), Positives = 67/266 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +   L    + A        Q L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALE 817

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 818 TVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN 877

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +        L LD
Sbjct: 878 IGGKQALETVQRLLPVLCQDHGLTLD 903

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  134 bits (337), Expect = 2e-32
 Identities = 34/292 (11%), Positives = 73/292 (25%), Gaps = 6/292 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q          A+      +     ++  +    +A    
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L ++ + A        Q L 
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT 672
                A+   +  +        L  D +          Q L   Q+ + +  
Sbjct: 912 G-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLC 962

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  132 bits (334), Expect = 6e-32
 Identities = 46/318 (14%), Positives = 87/318 (27%), Gaps = 19/318 (5%)

Query: 382 DFRLSRGIAQVNEGKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRE-------LEA 433
           D   +  +     G        I  ++      + EAL+G G   A           L  
Sbjct: 44  DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT 103

Query: 434 AISDFTEAIQSNPSAGEA-----WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
               +   I + P A         K+   ARA      +A +     L+ +      + +
Sbjct: 104 VAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAK 163

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           RG V        +      A + L      A         ++   ++      +A  L  
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + A        Q L   ++ L  L Q   +      A          L   ++ +  L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAF 663
               G+ P  +  +        A+   +  +     A  L  D +          Q L  
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343

Query: 664 YQKEIALYT-ASKINSEF 680
            Q+ + +   A  +  + 
Sbjct: 344 VQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 1e-10
 Identities = 27/246 (10%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 386  SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            S    +         + +  Q          A+      +     ++  +    +     
Sbjct: 808  SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867

Query: 446  PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---- 501
            P    A       +       +A++ + + L        +  ++ +         A    
Sbjct: 868  PDQVVAIASNIGGK-------QALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETV 920

Query: 502  --AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +  L     L  +   A         ++   ++      +   L  N + A      
Sbjct: 921  QRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS-NG 979

Query: 560  FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
              Q L +    L      L      +   +   + L  LG  + A+  +  GL   P  I
Sbjct: 980  GKQALESIVAQLSRPDPAL------AALTNDHLVALACLGG-RPAMDAVKKGLPHAPELI 1032

Query: 620  ECLYLR 625
              +  R
Sbjct: 1033 RRVNRR 1038

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88
             V+A A     + A    L    + + +L      +   +  I +       LE  + +
Sbjct: 190 AQVVAIASNNGGKQA----LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQ 142
           +    +A  L P  + A         AL   +  L V  +          A+      KQ
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 143 FLE-LEELLTAAKQ 155
            LE ++ LL    Q
Sbjct: 306 ALETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L    + A         AL   +  L V  + + 
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 132 H------ALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                  A+      KQ LE ++ LL    Q   +T + 
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 49  LRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           L    + + +L      + E +  I +       LE  + ++    +A  L P  + A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 108 LKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQDRSVT 160
             G    AL   +  L V  +          A+  +   KQ LE ++ LL    QD  +T
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 161 CEYDV 165
               V
Sbjct: 800 LAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +       LE  + ++    +A  L P  + A         AL   +  L V  +
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK----- 128
           +       LE  + ++    +A  L P  + A    G    AL   +  L V  +     
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 129 -GYEHALHQSADLKQFLELEELLTAA 153
                A+      KQ LE  + L   
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPV 350

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L      + + +  I +       LE  + ++    +A  L P  + 
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A    G    AL   +  L V  + + 
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHG 593

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A    G    AL   +  L V  + + 
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 132 ------HALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
                  A+  +   +    ++ LL    Q   +T + 
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 48  SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106
           +L    + + +L         ++  I +       L   + ++    +A  L P  + A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 107 ILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
              G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 69  IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  I +       LE  + ++    +   L P  + A         AL   ++ L V  +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 129 ------GYEHALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                     A+  +   KQ L  ++ LL    Q   +T + 
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  160 bits (408), Expect = 5e-44
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 19/270 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +  P   EA    G  +A   +   AI     A   
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P           +      +  A+  L   L  +P    +       +    D      
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDL----- 139

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                                  ++  EY++       A++++ N  +    L   Y   
Sbjct: 140 --------------NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N + A   L++ + +    ++ ++  G  L    + ++A+   +  L I+P  +  +Y 
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME 654
            A  Y  + +Y  A K    A+ +++    
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  130 bits (328), Expect = 2e-33
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 15/234 (6%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            +    +D+     +     E     G +   L    EA        +  P   +     
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G+   + +    A+  L+    LD ++ + +  L ++ ++      A  +    +     
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 550 FLEAWGHLTQ---------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           + +      Q               F+       +    L   L ++   ++ +   G+L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            +    +  A  +L   + + P + +      +        +EA+  Y+ ALD+
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  113 bits (284), Expect = 2e-27
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 15/201 (7%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G  ++   D            +   E G+   K  +   A     A  +   E + A+  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LGL  +   +   A  A   A  LD   +     L   + +  N+  AL  L+  L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 583 RFSKAYHL---------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           ++ +   +                        ++++    L + L ++P++ +       
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 628 CYHAIGEYREAIKDYDAALDL 648
            Y+    Y  A  +   A++L
Sbjct: 181 LYNLSNNYDSAAANLRRAVEL 201

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  108 bits (271), Expect = 7e-26
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTARAFQR 429
            +  ++  NE    +A++     L   P Y +                +       A   
Sbjct: 93  AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           E     +    A++ NP+  +     G           A  +L +A+E  P+ A + ++ 
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G           A++  +  + ++         + ++ S++ +Y  A +  ++AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
                G  ++       +    +  + +L +  R    
Sbjct: 273 GTTPTGEASR-----EATRSMWDFFRMLLNVMNRPDLV 305

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++   + E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 91  VHAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  F ++    ++        AL+++P   Q +   G  ++     + A +   +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 6/55 (10%), Positives = 13/55 (23%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +L          +   Q  P   +A+   G   +   +   A+     
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  159 bits (403), Expect = 6e-43
 Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 19/300 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG     I   +  + +DP   EA    G  +A     +AAI      ++ 
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+  +A      +        +A + L   ++  P    ++  +       +  + +  
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

Query: 505 DLSACVKL------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           D S    +            D  +    T LG+     GE+ +A +A   A+ +      
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            W  L     +   SE+A+E   + L I   F ++ +  G+    LG +++A+ +  + L
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308

Query: 613 GIDPSNIECLYLR--ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670
            +   +     +   A   +     R A+   D       +  +   L  L    +   L
Sbjct: 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP-----ELFQAANLGDLDVLLRAFNL 363

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  151 bits (384), Expect = 2e-40
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 12/282 (4%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +S      N+   +++   +    +            G  R  + +L   I     AI  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P   EAW+  G  +A       AI  L + LE +PN+   L    +          A E
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

Query: 505 DLSACVKLDKENKSAYTYLGL----------ALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            L   +K + + K                  +       +  +E +L+A   + + ++  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214

Query: 555 GH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L   +       +A++     L +       ++  G  L    + ++A++  +  L
Sbjct: 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
            I P  I   Y        +G YREA+ ++  AL L+  S  
Sbjct: 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  137 bits (347), Expect = 2e-35
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 13/265 (4%)

Query: 397 YASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
             S    +D++  E + M     I        Q  + A+   +    ++           
Sbjct: 12  VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  R   G+    I  +  A+  +P  A+     GI   + ++  AA+  L  C++L   
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           N  A   L ++ ++    + A EA    I+ +  +     +            K+     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

Query: 576 QVLYIDKRFSKAYHL------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            +  + + + +A H              G+L H  G+  +AI   ++ L + P +     
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN 251

Query: 624 LRASCYHAIGEYREAIKDYDAALDL 648
              +         EA++ Y  AL++
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  126 bits (318), Expect = 1e-31
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 20/241 (8%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN-- 481
             E E A +      +        W    +R   +     ++   +    K   F     
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 482 --SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                   E G+   K  D    +  + A +  D  +  A+ +LG+  +     + A  A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             + ++L  N L+A   L   Y + ++ + A E L+  +  + ++      +        
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYL------------RASCYHAIGEYREAIKDYDAALD 647
           +  K+  D S   G+    +E  +                 +H  GE+  AI  ++AAL 
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 648 L 648
           +
Sbjct: 242 V 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           K     +    I  +++ + Q     +         ++ E  +  I    + L+L P  L
Sbjct: 74  KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           +A +    +++    +++A    + 
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +       I   + A+  DP   +A+   G   +    ++ A+   ++
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  154 bits (392), Expect = 2e-42
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 8/263 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE---EAHLKAIQLDRNFLEAWGHLTQF 560
           +DL A  + D  +     +L LA   + E +  E   +   K+ +    +     +L   
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
             +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 621 CLYLRASCYHAIGEYREAIKDYD 643
                      +G+ ++ + + D
Sbjct: 251 EHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  151 bits (384), Expect = 2e-41
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 4/224 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+   + G  A A + F Q L   P  PE     G         +AA   F   ++ +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A   RG A    G    A  DL    + +PN         +   K  D   A E L
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVL 167

Query: 507 SACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +   + +  +  +   L +I      ++ +        L  +  E   +L ++Y  
Sbjct: 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           L + + A    +  +  +      +    L L  LGQ +  + +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  142 bits (359), Expect = 5e-38
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 13/263 (4%)

Query: 422 GTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
                   + E  ++   + + S    +    +    RG    +LG    A  D S+AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
             P+  ++ +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A+
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-- 595
           +  L   Q D N       L    Q L + ++A E L+Q      +    +++    L  
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 190

Query: 596 -HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                  ++   D +    +     E  +     Y ++G+   A   +  A+   + +  
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 655 -----KFVLQCLAFYQKEIALYT 672
                   L  L   Q ++A   
Sbjct: 251 EHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  117 bits (294), Expect = 2e-29
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 4/193 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI     G + +A   FD +L+ DP Y  A + RG A  +    + A  D     Q +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAV 503
           +          A   L E  +A + L +  E         +          +        
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            D +    L +       YLG    S+G+   A      A+  + +      +       
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

Query: 564 LANSEKALECLQQ 576
           L   +  L    Q
Sbjct: 262 LGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  111 bits (280), Expect = 2e-27
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 7/211 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           + + +       +   Q    L    + +         +   A +L+ERG++        
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A  D S  + +  +    + YLG+ L+  G +  A EA    ++LD  +  A  +    
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                  + A + L      D           L    L + K+A + L            
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

Query: 621 CLYLRASCYHAI---GEYREAIKDYDAALDL 648
              +       I           D      L
Sbjct: 180 GWNIVEFYLGNISEQTLMERLKADATDNTSL 210

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 10/190 (5%)

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
              + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +
Sbjct: 27  RMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++  
Sbjct: 87  LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV--------LQCLAFYQKEIALYT 672
                      + E  +A +      +        +         +      ++  A  T
Sbjct: 147 RSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 205

Query: 673 -ASKINSEFC 681
             + +     
Sbjct: 206 DNTSLAEHLS 215

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 28/173 (16%), Positives = 49/173 (28%), Gaps = 9/173 (5%)

Query: 519 AYTYLGLALSSIGEYKKA----EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               L + L    + +      E+        D    +        Y  L     A    
Sbjct: 7   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 66

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            Q L I     + ++  G+ L   G    A +   S L +DP+       R    +  G 
Sbjct: 67  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126

Query: 635 YREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYTASKINSEFCW 682
            + A  D  A    + +   +        Q L   Q +  L    + + +  W
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + +        +  ++  +  R   Y  L L      D  +AL + P + + +   G  
Sbjct: 29  EQILASRALTDDERAQL--LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 113 FSALGRKEEALSVWEK 128
            +  G  + A   ++ 
Sbjct: 87  LTQAGNFDAAYEAFDS 102

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
              LA      ++S+A+ I    + + +            +Q           D  L+LD
Sbjct: 58  LRALA----RNDFSQALAI-RPDMPEVF-----NYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           PT   A++ +G A    GR + A       Y+
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             + +    +    L+++            Y  L            A+  +      +  
Sbjct: 201 KADATDNTSL-AEHLSETN-----FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 109 KGCAFSALGRKEEALSVWEK 128
                S LG+ ++ L+  ++
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 79  YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            S+  L + +  D      L   L +     G  + +LG  + A ++++ 
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  154 bits (392), Expect = 2e-41
 Identities = 52/292 (17%), Positives = 99/292 (33%), Gaps = 28/292 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+LD  +        LG+  +  GEY KA +    A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307

Query: 608 LSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDL 648
               L +   +        +    I           G+           L  
Sbjct: 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  120 bits (304), Expect = 7e-30
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 26/279 (9%)

Query: 396 KYASAISI----FDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAG- 449
           ++  A S      D   K      E       A  +     +   + + +  Q       
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 450 ---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    G  R   G+   A+     A++ +P   +     G    + +    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ------- 559
             C++L  +N++A   L ++ ++    ++A E     ++    +        +       
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

Query: 560 --------FYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                        +   +  E     + +             G+L +  G++ KA+   +
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           + L + P++        +      +  EA+  Y  AL+L
Sbjct: 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  107 bits (269), Expect = 3e-25
 Identities = 44/267 (16%), Positives = 84/267 (31%), Gaps = 32/267 (11%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNS--- 482
           F+R   A  SD     +      E  KR  +A   L +  +       K  +FE  +   
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 483 -ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
                 E G+   +  D   AV    A V+ D ++  A+ YLG   +   +   A  A  
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
           + ++L  +   A   L   + + +   +A E L+  L     ++                
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT------------ 170

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV---- 657
                   +  G   + +           +   + E  + + AA+ L+  S++  V    
Sbjct: 171 -------PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223

Query: 658 ---LQCLAFYQKEIALY-TASKINSEF 680
                    Y K +  +  A  +    
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 93.9 bits (234), Expect = 9e-21
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAI 442
                + +++  +     +F   ++ DP    P+   G G       E + A+  FT A+
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
              P+    W + G   A   +S EA+    +ALE +P      +  GI          A
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304

Query: 503 VEDLSACVKLDKEN-----------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
           VE     + + +++           ++ ++ L LALS +G+      A  + +       
Sbjct: 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 552 E 552
            
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +     +   A+ + ++ + Q  +  +         ++ E     I    + L+L P   
Sbjct: 73  RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
            A +    +F+    + +A  +   
Sbjct: 133 TALMALAVSFTNESLQRQACEILRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  Q     + +   + A+Q DP  ++A+   G   +   ++  A+S   +
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  126 bits (320), Expect = 5e-33
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 3/235 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
               V  G +    +   +  K      +A I  G     +   E A     +A++ +PS
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 69

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           + +A            E   A ++  KAL  +  +A +L+  G   ++ K +  A + L 
Sbjct: 70  SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 508 ACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
              +  L  E    +  LGL    + +  +A+E   K+++L+RN       +        
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
               A +          + +++  L   L         A         + P ++E
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  123 bits (312), Expect = 7e-32
 Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 2/229 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R       +  +  +    A +A+ + G      G + +A   L KALE +P+SAD   
Sbjct: 16  PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-- 545
              +V     +   A E+    +  D  N       G  L     Y++A +  L+A Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
           L       + +L      +    +A E  ++ L +++           LL+   ++  A 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
           +           N   L L         +   A         L   S+E
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 97.7 bits (244), Expect = 7e-23
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
             +    E +   A   + + L  D      L   G     Q+  E A     EA Q   
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P     ++  G     + +  +A +   K+L    N   +  E   + +K +++  A +
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
                 +   +N  +            +   A    L+  +L    LE      +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + +    L   G +   ++  LK  +      +A+  L   Y    N+E+A   L++ L
Sbjct: 6   HHHHHSSGLVPRGSHM-GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            ID   + A+    ++     + K A ++    L  D  N   L       +    Y EA
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 639 IKDYDAALDLELD 651
            +    A    L 
Sbjct: 125 YQRLLEASQDTLY 137

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  123 bits (311), Expect = 3e-32
 Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 24/233 (10%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +  +  G         +AA++ F  A++ NP   EA     + +  LG    A+++   
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
            +   P                                     + Y          G  +
Sbjct: 65  LVARTPRYLGGYMVLSEA-----------------------YVALYRQAEDRERGKGYLE 101

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A      A +++  +          Y  L   +KA   L+Q L ++    +       L
Sbjct: 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL 160

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +G+  +A+   +  L   P +++     AS     G+  EA +       
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  121 bits (305), Expect = 2e-31
 Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 46/241 (19%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+     G+Y +A+++F++ LKE+P  PEAL      +     +  A+ +    +   P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 447 SAGEAWKRRGQARAALGESV-----------EAIQDLSKALEFEPNSADILHERGIVNFK 495
                +    +A  AL               +A+  L  A    P  A            
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP----------- 119

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
                                   +   GL  + +GE  KAE +  +A+ L+ +  E   
Sbjct: 120 -----------------------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
            L + Y  +   ++AL    + L    +           L   G+ ++A +  +      
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

Query: 616 P 616
            
Sbjct: 216 H 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  101 bits (253), Expect = 2e-24
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 49/218 (22%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           +Q+     +   R G    ALG    A+    +AL+  P   +                 
Sbjct: 1   MQTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----------------- 40

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
                            A  +L      +G    A E     +     +L  +  L++ Y
Sbjct: 41  -----------------ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 562 QDLANS-----------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
             L              E+AL  L+    ++ R++  +  RGL+   LG+  KA   L  
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L ++    E     A  Y ++G   EA+  Y  AL+ 
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 95.7 bits (239), Expect = 2e-22
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-----------RAFQRELEAAI 435
               Q+  G    A+     ++   P Y    +    A              +  LE A+
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
           S   +A + NP       +RG   A LGE  +A   L +AL  E    +I      +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLS 163

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               + A+   +  ++   ++         AL   G+ ++A  A         +
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + D+   +          A  Y  +      +    KAL+  P  L   +    A 
Sbjct: 143 QALALEDT--PEIR-----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 114 SALGRKEEALSVWEKGYEHALH 135
              G+ EEA       + H  H
Sbjct: 196 LLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           Q+          L  +   +   ++AL+ +P   +A          LG    A     + 
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA----LEN 61

Query: 130 YEHAL 134
            +  +
Sbjct: 62  GKTLV 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A++  +    ++         A    +L L    + +    +   P  L  Y++   A+
Sbjct: 30  RALKE-NPQDPEAL-----YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146
            AL R+ E     +   E AL   + LK    +
Sbjct: 84  VALYRQAEDRERGKGYLEQAL---SVLKDAERV 113

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  128 bits (324), Expect = 7e-32
 Identities = 42/276 (15%), Positives = 94/276 (34%), Gaps = 20/276 (7%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNPSAGEAW 452
           + +    +   +++L    +  +AL+ +G A          A    ++A++  P   EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVN--FKFKDFNAAVE 504
            + G+     G+   A    S AL    N         +L +    +     +    +V 
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 505 DLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDR---NFLEA 553
                V++D  +  ++  LG A  S            ++A  A+ +A ++DR   +  + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    ++   +  +ALE   Q   +D  + +       LL  L +    ++       
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               ++      A          ++       L+L+
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  128 bits (322), Expect = 1e-31
 Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 22/251 (8%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNS 482
            +  Q E+E  +    E + S     +A   +G+A     + S EA   LSKA++ EP  
Sbjct: 77  QQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL- 541
            +  ++ G V +K  D  +A    S  +   K NK +   L + L  +      E +   
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 542 --------KAIQLDRNFLEAW-----GHLTQFY---QDLANSEKALECLQQVLYIDKR-- 583
                    A+Q+D     +W      +L+ ++   Q+   S++AL    Q   +D++  
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 584 -FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                +  R  L      + +A++  S    +DP+  E           +      ++  
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315

Query: 643 DAALDLELDSM 653
                 +L SM
Sbjct: 316 GKTKPKKLQSM 326

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  107 bits (267), Expect = 1e-24
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 30/298 (10%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           Q +    M  +            + L   +  F ++     S  +A +++   +    E 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEM 84

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLG 524
            + +Q + + L      A  L  +G       D++  A   LS  VKL+ E   A+  LG
Sbjct: 85  EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---------NSEKALECLQ 575
                 G+   A      A+   +N   +  +L+   + L          +   ++   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 576 QVLYIDKRFSKAYHLRGLLL--------HGLGQHKKAIKDLSSGLGID---PSNIECLYL 624
             + +D    +++++ G                 ++A+   +    +D    SN +    
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYTASKIN 677
           RA+ +     Y EA++ +  A  L+    E     + +L+ L+     +     +K  
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPK 321

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 96.2 bits (239), Expect = 5e-21
 Identities = 39/281 (13%), Positives = 83/281 (29%), Gaps = 27/281 (9%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFK 497
              Q             +A+  L +    +  L    +  FE +S +    +       +
Sbjct: 25  TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--VQE 82

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEAWGH 556
           +    ++ +   +   +    A    G AL+   +Y  +AE    KA++L+   +EAW  
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK---------KAIKD 607
           L + Y    +   A  C    L   K    +     ++L  L              +++ 
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 608 LSSGLGIDPSNIECLYLRASCY--------HAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
               + +D  +    Y+  + Y              ++A+  Y  A  ++     K    
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD----RKASSN 257

Query: 660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKR 700
                 +                F     +DP + E   + 
Sbjct: 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 83.1 bits (205), Expect = 8e-17
 Identities = 27/210 (12%), Positives = 50/210 (23%), Gaps = 53/210 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE--------ALIGRGTARAFQRELEAAISDF 438
            G     +G   SA + F   L                  +   +     R +  ++   
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 439 TEAIQSNPSAGEAWKRRGQARAA-----------LGESVEAIQDLSKALEFEPNSADILH 487
             A+Q +   G +W   G A  +             +++ A     K      ++ D   
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD--- 259

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                                           +            Y +A E   +A  LD
Sbjct: 260 -------------------------------LHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQV 577
             + E      Q  + L+     LE   + 
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
           ++ +  S + D  L+R      E  Y  A+  F Q    DP +PE          F   L
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +    +       +     R            ++       LE +P     L  
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP--LSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            NRA  +   E +   +    +A  LDP   +    +      L R    L    K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  KAIRILDSLLAQSYEIQDIC-NRAFCYSQL-ELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           K ++ ++ +L  +         +    +   +          KA++L+P L++A+   G 
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 112 AFSALGRKEEALSVWEK 128
            +   G    A + +  
Sbjct: 146 VYWKKGDVTSAHTCFSG 162

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  122 bits (307), Expect = 8e-32
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA----------------LIGRGT 423
           SVD  L +  A +  G+   A+S F Q +  +    E                       
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A    R  + A   + E +Q  P+  +  +   + +   G+  +A++   K L+ E ++ 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                 G   +   +     +E     +    + + A    GL+      Y+KA  +  K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEK 569
            I    +  EA   L +  +      +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  120 bits (303), Expect = 2e-31
 Identities = 27/220 (12%), Positives = 66/220 (30%), Gaps = 19/220 (8%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   ++  A    G++ +A+    + +    +  ++ +   +                  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD----------------- 47

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
            K  + +    T L LA      Y KA   + + +Q   N ++      +        + 
Sbjct: 48  -KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASC 628
           AL   +++L ++     A    G   +   +  KK ++     L          Y     
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI 668
                 Y +A       +     +  +  L  +   +KE+
Sbjct: 167 KLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEV 206

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
           T + K+  IS        +A      Y  A   + ++L++ P   + L      +  + +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLSKALEFEPNSADILHER 489
            + A+  + + +Q       A    G       E   + ++   K L          +  
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           G+       +  A   L   +      ++  T L   L    E  +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKT-LDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 10/78 (12%), Positives = 25/78 (32%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           + ++     +         +     A  Y +   +        + LQ  P  +       
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95

Query: 111 CAFSALGRKEEALSVWEK 128
                 G++++AL ++EK
Sbjct: 96  EMQVCRGQEKDALRMYEK 113

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRA-FCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           LR + K +++ ++    +           + Y   E  K  +    K L     +  A  
Sbjct: 108 LRMYEKILQL-EADNLAAN-----IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 108 LKGCAFSALGRKEEALSVWEKGYE 131
             G +     R E+A +  +K   
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
               RN+ KA      LL      +  +   A         K  +R  +K LQL+   L 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 105 AYILKGCAFSALGRKE-EALSVWEK 128
           A I  G  +     +E + L    K
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYK 148

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  120 bits (303), Expect = 2e-31
 Identities = 26/169 (15%), Positives = 60/169 (35%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +GI+    G+Y+ A+ + +Q+   D    +  +  G A      ++        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +     G     + +   A+  L K  E  P + ++    G+       F+ A++  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
              + L       +  +  +   +G +++A     KA +LD        
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  119 bits (300), Expect = 5e-31
 Identities = 30/183 (16%), Positives = 65/183 (35%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           + ++      ++ +G + A  G   +A+  L +  + +    D+    GI   K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
             E L   +    +N    T LGL    + +Y  A    +K  + +         L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
            +L   ++A++  +  L +     K +         +G+H++A+        +D      
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

Query: 622 LYL 624
           L L
Sbjct: 181 LAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  114 bits (287), Expect = 3e-29
 Identities = 31/180 (17%), Positives = 70/180 (38%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D +       +G + A       A+    +   ++    +     G A    G      +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
            L ++L   P++  +    G+   + + ++ AV  L    + +  N +    LG+AL ++
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G + +A ++   A+ L  N  +    +   Y+ +   E+AL   ++   +D+  S    L
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 99.1 bits (248), Expect = 5e-24
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +  D   +  Y   G++ +  G Y +A     +    D   ++   HL   Y      ++
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
             E L++ L       K   + GL    + ++  A+  L      +P N    +      
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 630 HAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYT-ASKINSEF 680
             +G + EAI  +  AL L  +  +      F  + +  +++ +  +  A++++   
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 5/55 (9%), Positives = 20/55 (36%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           ++   +++   +   +   ++    D   +   +  G A+   G  +    + E+
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +++        +             Y Q++ +   +    K  + +P         G A 
Sbjct: 67  RSLAD-APDNVKVA-----TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 114 SALGRKEEALSVWEK 128
             LGR +EA+  ++ 
Sbjct: 121 DNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +    +     D+            +    Y +           +++L   P  ++   +
Sbjct: 28  VMLLEQVYDA-DAFDVDVA-----LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G  +  + + + A+ +  K
Sbjct: 82  LGLTYVQVQKYDLAVPLLIK 101

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K     + +                   L      I     AL L P   + +     ++
Sbjct: 101 KVAEA-NPINFNVR-----FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 114 SALGRKEEALSVWEK 128
             +GR EEAL  ++K
Sbjct: 155 EQMGRHEEALPHFKK 169

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  127 bits (320), Expect = 3e-31
 Identities = 48/323 (14%), Positives = 92/323 (28%), Gaps = 54/323 (16%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISD 437
           +D        +    +   A   F++ L++ P  PE   G   A          + AI  
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197

Query: 438 FTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVN 493
             +AI+ NP               +     E  E  + + +ALE  P   D+L       
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-------------------YK 534
            +  + + A+E L   ++    N   +  +G    +                        
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----YHL 590
            A     KA + + N       L   +      E+A    Q+    +             
Sbjct: 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGI------------------------DPSNIECLYLRA 626
               L+ +    KAI     G+ I                        + ++ E L++ A
Sbjct: 378 GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLA 437

Query: 627 SCYHAIGEYREAIKDYDAALDLE 649
                  + ++A +D +  L+  
Sbjct: 438 FLQELNEKMQQADEDSERGLESG 460

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  125 bits (315), Expect = 1e-30
 Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 45/351 (12%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           F W++++  ++      K       +++             +  +G+  +A+    +  +
Sbjct: 20  FTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79

Query: 410 ---------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAW 452
                     +                   L        +               + E  
Sbjct: 80  LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139

Query: 453 KRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN---AAVEDLS 507
              G  R   G +    A     KALE +P + +      I +++  ++     A++ L 
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 508 ACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             ++L+ +N+     L L L  +     E  + E+   +A++      +      +FY+ 
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-------------------A 604
               +KA+E L++ L      +  +   G                              A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
           +  L      + +      + AS +    +Y EA   +      EL  + K
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  104 bits (261), Expect = 7e-24
 Identities = 43/277 (15%), Positives = 80/277 (28%), Gaps = 51/277 (18%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTA----RAFQRELEAAISDFTEAIQSNPSA 448
           N     +AI    Q ++ +P      +         R    E         EA++  P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV---------------- 492
            +  +   +      E  +AI+ L KALE+ PN+A +  + G                  
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 493 ---NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                  +    AV  L    + +       + L    +   +Y++AE    K    +  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 550 FLEAWG---HLTQFYQDLANSE-KALECLQQVLYIDK----------------------- 582
            +           F       E KA+    + + I++                       
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426

Query: 583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              S+A H+   L     + ++A +D   GL      
Sbjct: 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 47/247 (19%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
              +      + ++ L++ P   + L         + E + AI    +A++  P+     
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 -------------------KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
                                    R  L     A+  L KA E   N   +      ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQL--- 546
                +  A          +    +       Y    L  +    KA    ++ +++   
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 547 ---------------------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
                                +    EA   L    +     ++A E  ++ L       
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464

Query: 586 KAYHLRG 592
            A    G
Sbjct: 465 SASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 16/156 (10%)

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           K + E+ L+  QL  +F   W  L +    L + E  +   +      +  +   +L   
Sbjct: 6   KNSLESSLR--QLKCHF--TWN-LMEGENSLDDFEDKV-FYRTEFQNREFKATMCNLLAY 59

Query: 594 LLHGLGQHKKAIKDL---------SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           L H  GQ++ A++ L               +  ++      A  Y+ +G   +     D 
Sbjct: 60  LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119

Query: 645 ALDLELDSMEKFVLQCLAFYQKE-IALYTASKINSE 679
              +       + ++      +E           +E
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  106 bits (267), Expect = 3e-26
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             + +    +  +    Y  A +  +  LK DP    A + R     + +  + A   F 
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 440 EAIQSNPSAGEAWKRRGQA-RAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKF 496
           +A+   P + E     G      L    E++    KAL     P                
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI------------ 114

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
                                 A    G+  +  G++  AE    +++     F  A+  
Sbjct: 115 ----------------------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L +          A    ++     +       L G  +     + +A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  100 bits (250), Expect = 7e-24
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 37/209 (17%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           +          +         +  +A   +  AL+ +P +                    
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------ 43

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL-TQFY 561
                           A+         +    KA+E+  +A+ +  +  E   +      
Sbjct: 44  ----------------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87

Query: 562 QDLANSEKALECLQQVL--YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
             L    +++    + L          A   +G+     GQ   A   L   L   P   
Sbjct: 88  GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 A      G+  +A   +      
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           +           L   Y    +  +A   ++  L  D +   A+ +R  +   L  + KA
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 605 IKDLSSGLGIDPSNIECLYLRASC-YHAIGEYREAIKDYDAALDLEL 650
            +     L I P + E            +    E++  +D AL    
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT 108

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  109 bits (274), Expect = 5e-25
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 3/281 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
               +  +G    A+ ++ + L+  P +  A     +    Q +L+ A+  + EAI+ +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +  +A+   G     + +   A+Q  ++A++  P  AD       ++    +   A+   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
              +KL  +   AY  L   L  + ++   +E   K + +  + LE      +   +  L
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIECLY 623
                         + +    K   L           K +   L  G    D  N    +
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           L  S        +  +  Y  + D   +   K + +   F 
Sbjct: 255 LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFI 295

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  108 bits (271), Expect = 1e-24
 Identities = 32/186 (17%), Positives = 75/186 (40%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
            P + ++L      +  Q  +E A+  + +A++  P    A           G+  EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
              +A+   P  AD     G    + +D   A++  +  ++++     A++ L       
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +A  ++  A++L  +F +A+ +L    Q + +     E +++++ I     +   L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 591 RGLLLH 596
             +  H
Sbjct: 185 PSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  104 bits (261), Expect = 2e-23
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 6/201 (2%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S P+  ++       +   G   EA++   KALE  P  A        V  +      A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
                 +++      AY+ +G  L  + + + A + + +AIQ++  F +A  +L   ++D
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE--- 620
             N  +A+   +  L +   F  AY      L  +       + +   + I    +E   
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

Query: 621 ---CLYLRASCYHAIGEYREA 638
                   +  Y     +R+A
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKA 204

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  104 bits (260), Expect = 3e-23
 Identities = 36/232 (15%), Positives = 90/232 (38%), Gaps = 6/232 (2%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           P  AD L+    +  +  +   AV      +++  E  +A++ L   L   G+ ++A   
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           + +AI++   F +A+ ++    +++ + + AL+C  + + I+  F+ A+     +    G
Sbjct: 66  YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME----K 655
              +AI    + L + P   +     A C   + ++ +  +     + +  D +E     
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185

Query: 656 FVLQCLAFYQKEIALY--TASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKN 705
            V    +        +    ++ +   C   I+    P ++     +L    
Sbjct: 186 SVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGR 237

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L ++ +AIR +    A +Y      N      +++  +  ++   +A+Q++P    A+  
Sbjct: 63  LMHYKEAIR-ISPTFADAY-----SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 109 KGCAFSALGRKEEALSVWEKGYE-------------HALHQSADLKQFLELEELLTAAKQ 155
                   G   EA++ +    +             H L    D   + E  + L +   
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

Query: 156 D 156
           D
Sbjct: 177 D 177

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  105 bits (263), Expect = 1e-24
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +      ++ ++     + 
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
           + P N              G   +     +  LDL+      +++  L    +++     
Sbjct: 269 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327

Query: 674 SKINSEF-----CWFDIDGDIDPLFKEYWC 698
                           +  + D + KEYW 
Sbjct: 328 DNKEDILNKALELCEILAKEKDTIRKEYWR 357

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 99.8 bits (248), Expect = 1e-22
 Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 18/262 (6%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W         T  Y D A  E+ ++   +++ +   
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGE--YREAI 639
              A++    +L   G   K    L+  L + PS+     +      Y  + E       
Sbjct: 273 NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331

Query: 640 KDYDAALDL------ELDSMEK 655
              + AL+L      E D++ K
Sbjct: 332 DILNKALELCEILAKEKDTIRK 353

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 18/138 (13%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  I     F + + +     Q    SE+A +  +  + ++      +H R +LL  L +
Sbjct: 87  VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146

Query: 601 H-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME----- 654
              + +  +++ +   P N +  + R      + +  + ++     L+ +  +       
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 655 KFVLQCLAFYQKEIALYT 672
           ++V+Q    +  E+    
Sbjct: 207 QWVIQEFKLWDNELQYVD 224

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA------RAFQRELEAAISDFTE 440
           R         + + +   DQ+LKED         R            +  LE  +    E
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHE--R 489
            I+  P    AW          G S +    L++ L+ +P+           DI  +   
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324

Query: 490 GIVNFKFKDFNAAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
              + K    N A+E       + D   K  + Y+G +L S    +     +++  + 
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQEEF 382

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +D R ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EA
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122

Query: 639 IKDYDAALDL 648
           I+ Y  AL+L
Sbjct: 123 IEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 89.8 bits (224), Expect = 2e-21
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 34/169 (20%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+                         
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------------- 36

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 37  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           A+E  Q+ L +D R ++A++  G   +  G + +AI+     L +DP +
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 88.2 bits (220), Expect = 8e-21
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+                      
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------------------- 104

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                       A+  LG A    G+Y +A E + KA++LD
Sbjct: 105 ------------AWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 645 ALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           AL+L+  S E +            Y + I  Y  A +++   
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+  
Sbjct: 55  IEYYQKALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G A+   G  +EA+  ++K
Sbjct: 109 LGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 26  KALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 80  YKQGDYDEAIEYYQK 94

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 96.7 bits (241), Expect = 6e-23
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 35/196 (17%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVED 505
               A+ +RG       +   AI+DL +AL     N        G+   +FK F      
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL---QFKLFACE--- 122

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                            +    +   E+KKAEE    A  +                  +
Sbjct: 123 -------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHS 157

Query: 566 NSEKALECLQQVLYID 581
             +KA+EC+ +    +
Sbjct: 158 KIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 85.2 bits (211), Expect = 7e-19
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +    G+  +   ++K A +A                ++   Y  L N  +A +   + +
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS----------------SGLGIDPSNIECL 622
             DK  + AY  RG+L +   ++  AIKDL                  GL       E L
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124

Query: 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670
           Y  A  Y    E+++A +    A  ++ +     + + +    K+   
Sbjct: 125 YNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
               ++W  A+    ++      I    N    Y+ L+      +   +++  D  L  A
Sbjct: 16  AADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +    + + A+   ++
Sbjct: 74  YFQRGMLYYQTEKYDLAIKDLKE 96

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 38/150 (25%)

Query: 376 SKSISVDFRLS-----RGIAQVNEGKYASAISIFDQILKEDP----------------MY 414
           ++SI+ D  L+     RG+      KY  AI    + L +                    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E L       A + E + A      A                      +  +A++ + K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWK 168

Query: 475 ALEFEPNSADI-----LHERGIVNFKFKDF 499
              +EP    +      +ER +     KD+
Sbjct: 169 QKLYEPVVIPVGRLFRPNERQVAQLAKKDY 198

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.9 bits (229), Expect = 4e-22
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q+    + +A+  + + ++ +P        R  A +       A+ D   AI  +P
Sbjct: 18  EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +  +A+ R G A ++L + VEA+    KALE +P++        I   K ++
Sbjct: 78  AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
           E +   A+ L   G    K ++F AAV      ++L+  N   +     A S +G Y  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596
            +   +AI +D  +                                  SKAY   GL L 
Sbjct: 66  VQDCERAICIDPAY----------------------------------SKAYGRMGLALS 91

Query: 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            L +H +A+      L +DP N             + E
Sbjct: 92  SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
              + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             AV+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD +          
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------ 116

Query: 560 FYQDLANSEKALE 572
              +L  +E  L 
Sbjct: 117 -KSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
           +ED    E L   G  +      EAA+  + +AI+ NP+    +  R  A + LG    A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528
           +QD  +A+  +P  +      G+          AV      ++LD +N++  + L +A  
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 529 SIGE 532
            + E
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            KAI  L+   A  +     CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A
Sbjct: 36  GKAIE-LNPANAVYF-----CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89

Query: 113 FSALGRKEEALSVWEKGYEH 132
            S+L +  EA++ ++K  E 
Sbjct: 90  LSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 16/82 (19%), Positives = 36/82 (43%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+    + + ++   +  +  R      LG +  A++D    + IDP+  +       
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              ++ ++ EA+  Y  AL+L+
Sbjct: 89  ALSSLNKHVEAVAYYKKALELD 110

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK   NE  + + F        K+I ++     +  +R  A    G YA A+   ++ 
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           +  DP Y +A    G A +   +   A++ + +A++ +P           A   L E+
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
            D   ++     G     +   + A+      + ++P+N      RA+ Y  +G Y  A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 640 KDYDAALDLE 649
           +D + A+ ++
Sbjct: 67  QDCERAICID 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 96.5 bits (240), Expect = 6e-21
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 2/177 (1%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +    +     A++  P    AW     A   +G++      + + L   P   + +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G V +  +    A   L        E+     +LG AL   G+ + A  A+ +A QL   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQHKKA 604
                  L  + + L +         QV     +   A      L       +    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 24/170 (14%), Positives = 44/170 (25%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
                 +      ++  P    A +    A     +  A        +  +P   EA  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G+ R       EA   L +A +  P    I    G          AA    +   +L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           E       L      + +++  +    +        + A        +D 
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 3/167 (1%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           D    +  L A V+   ++  A+  L  A   +G+    E A  + + L     EA   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +         +A   LQQ               G  L   GQ + A    +    + P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 618 NIECLYLRASCYHAIGEYR---EAIKDYDAALDLELDSMEKFVLQCL 661
                    +    + ++R          AA+   + ++E F     
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +  +       A++       AW  L      + ++      +Q+ L +     +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            G +     +H +A   L       P +              G+   A   Y  A   +L
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQL 120

Query: 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID---GDIDPLF---------KEYWC 698
              E ++   L  +++ +  + A  + S      +    G ++P           ++  C
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

Query: 699 KRLHPKNVCEKVYRQPPLRDSLKKGKLR 726
            R   + +   V    P R    KG LR
Sbjct: 181 ARTRAQAIAASVRPLAPTRVR-SKGPLR 207

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 16/142 (11%), Positives = 31/142 (21%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
            +    +  L  A+   P                 D  A    +   + L   +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    +   + +A     +A             L    +D   +E A     +   +  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
                          L   +  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 24/143 (16%), Positives = 43/143 (30%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
               L    A++  G   +      + L   P +PEA+   G  R  Q+    A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A  + P         G A    G++  A    ++A +  P    I  +      +  D+ 
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 501 AAVEDLSACVKLDKENKSAYTYL 523
           A     +       +   A    
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPF 165

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 39  ARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
           A + LA     + + +     +   LA      + +          + H        +A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFL 144
              P      +  G A    G+ E A + + +         +   Q  + ++ L
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 91.7 bits (227), Expect = 2e-20
 Identities = 36/257 (14%), Positives = 74/257 (28%), Gaps = 13/257 (5%)

Query: 395 GKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y   I+   ++    P    E  +    A   QR+    +    E   S+    +A +
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVR 69

Query: 454 RRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
              +  A+       + +L + +    +  +   L     + F  ++ +AA+  L     
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANSEK 569
           L+    +    L      +     A +   K    D +                    + 
Sbjct: 130 LECMAMTVQILL-----KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A    Q++           + +       G+ + A   L   L  D  + E L       
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 630 HAIGEYREAIKDYDAAL 646
             +G+  E    Y + L
Sbjct: 245 QHLGKPPEVTNRYLSQL 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 76.3 bits (187), Expect = 2e-15
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 9/248 (3%)

Query: 336 NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG 395
           N++     S  +   + D+    +  A+R     +  I  S +  +           +  
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHS 79

Query: 396 KYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  + ++  D+ +    D      L+   +   + +  +AA+    +       A     
Sbjct: 80  RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA----- 134

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLSACVK 511
              Q    L     A ++L K  + + ++         V+     +    A         
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
                            + G ++ AE    +A+  D    E   +L    Q L    +  
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

Query: 572 ECLQQVLY 579
                 L 
Sbjct: 255 NRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 432 EAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           +  I++      S+P    E      +A  A  +    + ++  +   E  +  +  E  
Sbjct: 16  QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAE-- 73

Query: 491 IVNFKFKDFNAAVEDLSACV--KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                    +A V +L   +   +D  N +                 A    L+ +    
Sbjct: 74  -YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA----LRTLH-QG 127

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG--LLLHGLGQHKKAIK 606
           + LE      Q    L   + A + L+++   D+  +          L  G  + + A  
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                       +  L  +A+C+ A G +  A      ALD +
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
            +       +         K   A  IF ++  +       L G+      Q   EAA  
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD-LSKALEFEPNSADILHERGIVNFK 495
              EA+  +    E           LG+  E     LS+  +   +   I         K
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277

Query: 496 FKDFNAAVEDLSA 508
             DF+  V   + 
Sbjct: 278 ENDFDRLVLQYAP 290

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R 429
             ++   S ++     +    + +G++ +A  +  + L +D  +PE LI          +
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

Query: 430 ELEAAISDFTEAIQSNPS 447
             E      ++   ++ S
Sbjct: 250 PPEVTNRYLSQLKDAHRS 267

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 88.5 bits (220), Expect = 8e-19
 Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 69/324 (21%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G    N G   + ++ F   ++      E L          G A  +  +   A+     
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    S  +   R G+A++          +G   EA     + L          +    
Sbjct: 112 DLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------------------- 522
           L+  G V                   + +    A  +                       
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G+++ A E H + +++ R F +      A  +L   +  L   E A E  ++
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 577 VLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L +           ++ +  G     L +   AI+       ++  LG         + 
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + + AIG +  A+K  +  L L
Sbjct: 349 LGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 38/283 (13%), Positives = 79/283 (27%), Gaps = 51/283 (18%)

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQ 470
           +      +           +      Q         S        G+     G+    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 471 DLSKALEFE----PNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY 522
               A++         + I  + G   F   D+N A++    DL+    ++     A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 523 --LGLALSSIGEYKKAEEAHLKAIQLDR-----------------------NFLEAWGHL 557
             LG  L  +G + +A     + + L R                         L      
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK----- 606
                      +A+E  Q+ L + +         +A    G   + LG  + AI+     
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 607 -DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             ++   G   +         + +  +G++ +A + Y   L L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 70.0 bits (172), Expect = 9e-13
 Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 27/204 (13%)

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKA 543
            + +                 +    +             G  L + G+ +        A
Sbjct: 15  NVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA 74

Query: 544 IQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGL 593
           IQ     L      +  L   Y  L +  KA++  +  L + K        +K+    G 
Sbjct: 75  IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134

Query: 594 LLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            L  +G+  +A         L+  LG   S    LY   + YHA G++           D
Sbjct: 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194

Query: 648 LELDSMEKFVLQCLAFYQKEIALY 671
           ++         + + FYQ+ + L 
Sbjct: 195 VKEALT-----RAVEFYQENLKLM 213

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 20/107 (18%), Positives = 41/107 (38%)

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
               L  + LE    L          + A +  Q +  +D   ++ +   G     LG +
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++A++  S G  +D +     +  A C+  +G+   A   + +A  L
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+       ++ + L+  G   ++   ++ A +   A   LD  +   +  LG    S+G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
            Y++A +++     +D N      H  + +  L + + A         +         L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 592 ---GLLLHGLGQHK 602
              G +L  +   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 79.8 bits (197), Expect = 8e-18
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++       LG      G++  A++       LD      +  L    Q L   E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           AL+       +D    +           LG    A     S   +  +      L A   
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA- 129

Query: 630 HAIGEYREAIKDY 642
              G   EA+   
Sbjct: 130 ---GAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
              +        E L   G  +    + + A   F      +      +   G  R +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520
              +A+Q  S     + N           + +  D + A     +   L       ++  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 521 TYLGLALSSIGEYK 534
              G  L ++   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 17/98 (17%), Positives = 27/98 (27%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q   GK+  A  IF  +   D       +G G  R      E A+  ++     + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           +         +    LG+   A      A         
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
                  +    E     G  +   G+  +A +        +   A      G       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  A++  S    +D        +       +G+   AE     A  L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 11/79 (13%), Positives = 31/79 (39%)

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
           L  +  + +   +  +  G   +  G+   A K   +   +D  +        +C  ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 634 EYREAIKDYDAALDLELDS 652
            Y +A++ Y     ++++ 
Sbjct: 67  LYEQALQSYSYGALMDINE 85

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 W  A +I  +L     Y+ +       C   L L++  ++       +D    +
Sbjct: 28  QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
                      LG  + A      G+  A   +A       L     A  +
Sbjct: 88  FPFHAAECHLQLGDLDGAE----SGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              + L  G  + + G Y  A+  +      D   P              +L+ A S F 
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 440 EAIQ---SNPSAGEAWKRRGQARAALGESVE 467
            A     + P+      R G    A+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTARKD 141

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 86.1 bits (214), Expect = 3e-18
 Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 66/324 (20%)

Query: 388 GIAQVNEGKYASAISIFDQ---ILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           G      G   + +S F+    +  ED           G A  +  +   A+      + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 444 SNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHE 488
              + G+   + G+A+A          LG   EAI    + L+       +   A  L+ 
Sbjct: 72  LARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--------------------------SAYTY 522
            G V                    +                               A+  
Sbjct: 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E  ++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 577 VLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L + ++       +++ +  G     L  ++KAI        ++  L          + 
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + Y A+G + +A+   +  L++
Sbjct: 309 LGNAYTALGNHDQAMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 42/209 (20%), Positives = 75/209 (35%), Gaps = 42/209 (20%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAE 537
           S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y KA 
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 538 EAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585
           E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +        +
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC-----LYLRA-------------- 626
           +A +  G + H  G+         +G   +           LY                 
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183

Query: 627 -------SCYHAIGEYREAIKDYDAALDL 648
                  + ++ +G +R+A+  ++  L +
Sbjct: 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 50/247 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 422 GTARAFQRELEAAISDFTEA------IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
                 +  L+AA+  + E       +    + G A+   G     LG   +A+    + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 476 LEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
           L        +          G       +F  A E     + L ++ K       +   L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577
           G   + + +Y+KA + HLK + + +          A   L   Y  L N ++A+   ++ 
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 578 LYIDKRF 584
           L I +  
Sbjct: 330 LEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 30/190 (15%)

Query: 386 SRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +    +       +A+ ++++ L       +      A    G           A+    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 440 EAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSAD 484
           + +      G+   +  + RA          LGE   A +   K L            A 
Sbjct: 208 QRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 485 ILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEE 538
             +  G      +D+  A++     L+   +L            LG A +++G + +A  
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 539 AHLKAIQLDR 548
              K +++ R
Sbjct: 325 FAEKHLEISR 334

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 19/142 (13%), Positives = 41/142 (28%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G        ++   E   ++ + L+      ++   +  A     A   LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    ++G+Y  A  ++     +D        H  +         +A   L     +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
              +   L   +   L   K  
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 20/145 (13%), Positives = 33/145 (22%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G   S       + +      E L      +      E A   F      +      +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  R A+G+   AI   S     +               +  +   A   L    +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEA 539
                        S +   K  +E 
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 74.9 bits (184), Expect = 5e-16
 Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 4/145 (2%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              +    ++   ++  +       L       G Y+ A         LD      +  L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
               Q +   + A+        +D    +        L   G+  +A   L     +  +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 618 NIECLYLRASCYHAIGEYREAIKDY 642
             E   L       +    EAIK  
Sbjct: 122 XPEFXELST----RVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 25/118 (21%), Positives = 37/118 (31%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G             ++  + LE    L          E A    Q +  +D   S+ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            G     +GQ+  AI   S G  +D       +  A C    GE  EA      A +L
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            L +         + +    E        +   G   +A          +   +      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G        ++ A+   S    +D        +    L   GE  +AE     A +L  N
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQ 576
                    +F +        LE ++ 
Sbjct: 122 -------XPEFXELSTRVSSMLEAIKL 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 20/105 (19%), Positives = 30/105 (28%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    Q   G Y  A  +F  +   D       +G G  R    + + AI  ++     +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
                      +     GE  EA   L  A E   N  +      
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 12/98 (12%), Positives = 28/98 (28%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
                 +  +  I     +  +      +  G ++ A     +   +D  +        +
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           C  A+G+Y  AI  Y     +++              Q
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 1/118 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 +  A  +  +L     Y+ +       C   +  +   I        +D    +
Sbjct: 31  QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCE 162
                       G   EA S      E   +     +    +  +L A K  + +  E
Sbjct: 91  FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 16/85 (18%), Positives = 24/85 (28%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              F L  G  +   G+Y  AI  +      D   P              EL  A S   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 440 EAIQSNPSAGEAWKRRGQARAALGE 464
            A +   +  E  +   +  + L  
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-- 656
           G        ++    I    +E LY  A   +  G Y +A   + A   L+      F  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 657 ---VLQCLAFYQKEIALY-TASKIN 677
                Q +  Y   I  Y   + ++
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMD 85

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--S 444
            G+ Q + G Y  +I +F++ ++ DP   +  + +G A       E A+  +   I    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +    + W  +  A   +       +      + E +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 76.0 bits (188), Expect = 8e-17
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
               PE     G  +        +I  F +AIQ +P   + W  +G+A   L    EA+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
             +  +    +                                  NK  +     AL  I
Sbjct: 62  CYNYVINVIEDE--------------------------------YNKDVWAAKADALRYI 89

Query: 531 GEYKKAEEAHLKAIQLDRNF 550
              +   E      +L+ + 
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 76.0 bits (188), Expect = 8e-17
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +  +N   Y   G+     G Y ++ +   KAIQLD    + W    +   +L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 572 ECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           +C   V+ +  D+     +  +   L  +   +   +   +   ++  +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.4 bits (158), Expect = 8e-13
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
           +  +  + Y+L G+L +  G + ++I      + +DP   +   ++    + +  Y EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 640 KDYDAALDLELDSMEK-------FVLQCLAFYQKEIALYT-ASKINSEFCWF 683
             Y+  +++  D   K         L+ +   + E  +    +K+       
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             + +  +  G++ +   ++  +++     ++LD E    +   G AL ++  Y++A + 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 540 HLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +   I +  D    + W       + +   E   E  +    ++
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                       +   I   +KA+QLDP   + +++KG A   L R EEA+  +  
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQA 105
           S+  + KAI++ D   ++ +       +      LE ++  +   +  + +  D      
Sbjct: 25  SIDLFEKAIQL-DPEESKYW-----LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           +  K  A   +  KE       +  E   
Sbjct: 79  WAAKADALRYIEGKEVEA----EIAEARA 103

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 85.3 bits (211), Expect = 8e-18
 Identities = 40/284 (14%), Positives = 90/284 (31%), Gaps = 39/284 (13%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
               RG+ + ++ +Y  AI  + +  K                         +SD  E  
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEK---------------------ELPFVSDDIEKA 141

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + +    EA+    Q   ++   ++A+        +   +   L         FK ++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 503 VEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL 551
           +  L A ++L  + +       +   +  +    G+ + A E   KA ++          
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSS 610
           +    L+        ++KA + +++ L      S K Y    L L  + +     + +  
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321

Query: 611 GL------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L       +      C    A+ + +   + +A   Y   L  
Sbjct: 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 25/216 (11%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE------DLSACV 510
             R  + E +E I+   K L         L  RG+  F  K++  A+            V
Sbjct: 76  GNRPTVTELLETIETPQKKLT-GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQD 563
             D E    +  +  A   + +   +    L+A+ + +N         ++   +   Y D
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--- 614
             + +KAL  L+  L +          + +           G  + A++       +   
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

Query: 615 --DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                  + L+  +      G+ ++A +  +  LD 
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE 572
           +  + G+      EY +A   + +A +            E    + + Y  +  +  ++ 
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162

Query: 573 CLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
            + Q L I         R  ++  +          + KA+       +L+  +  D    
Sbjct: 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661
             L   A+ Y   G+ + A++ +  A  +  + +   + + L
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 24/215 (11%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
              A+ I+           ++L          +  + A+     A++           R 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRF 220

Query: 457 QARA---------ALGESVEAIQDLSKALE-----FEPNSADILHERGIVNFKFKDFNAA 502
            A +           G+   A++   KA +            +L        K      A
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

Query: 503 VE----DLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWG 555
            +     L        K  K  + +L        + +K  +   + +   L         
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
                ++   + E+A    ++VL   +   K   L
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 28/167 (16%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------------NFLEAWGH 556
           ++ D++    Y+ +      + +Y +  + +     +                 L+ +  
Sbjct: 45  MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL 104

Query: 557 LTQ--FYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDL 608
             +  +  D     +A+   ++        S      + +       + + Q   ++  +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164

Query: 609 SSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L I           I+ L++ A  Y     Y +A+   +AAL+L
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
                +   Y  A+   +  L+       D     +L+    +     + + A+  F +A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 442 IQSNPSAGEAWKRR-----GQARAALGESVEAIQDLSKALE--------FEPNSADILHE 488
            + +         +            G++ +A Q + + L+        F       L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                   +  +  +        L    ++          S   +++A   + K ++   
Sbjct: 309 VYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 549 NFLE 552
           + L+
Sbjct: 368 DILK 371

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 85.4 bits (212), Expect = 9e-18
 Identities = 56/327 (17%), Positives = 107/327 (32%), Gaps = 72/327 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G      G   + +S F+  ++   +  E L          G A  +  +   A+     
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    + G+   + G+A+A          LG   EAI    + L+       +   A  
Sbjct: 73  DLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 486 LHERGIV--------------------NFKFKDFNAAVEDLSACVKLDKENK------SA 519
           L+  G V                            AAV+     + L            A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALEC 573
           +  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 574 LQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI-EC 621
            ++ L + ++        ++ +  G     L  ++KAI      L I     D       
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDL 648
            +   + Y A+G + +A+   +  L++
Sbjct: 310 CWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 53/325 (16%), Positives = 96/325 (29%), Gaps = 63/325 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

Query: 442 IQSNPSA-------------GEAWKRRGQARAALG------ESVEAIQDLSKALEF---- 478
           +  +                G  +  +G++    G         E    L  A++F    
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 479 ---------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
                               G  ++   +F  AV      + + KE         AY+ L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQV 577
           G A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++   + 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 578 LYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLR 625
           L I +  +      +A    G     LG H +A+       ++S  +G     +      
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353

Query: 626 ASCYHAIGE-YREAIKDYDAALDLE 649
           +     +G  Y           +++
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 54/287 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK- 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A + 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 607 -----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 L+  L       +  Y   + Y  + +Y +AI  +   L +
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 76.2 bits (188), Expect = 9e-15
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 44/212 (20%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKK 535
             S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 536 AEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----- 584
           A E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +       
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125

Query: 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRA----------- 626
            ++A +  G + H  G+          G   +         ++  Y              
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF-YEENLSLVTALGDRA 184

Query: 627 ----------SCYHAIGEYREAIKDYDAALDL 648
                     + ++ +G +R+A+  ++  L +
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 46/293 (15%), Positives = 83/293 (28%), Gaps = 69/293 (23%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
                 +  L+AA+  + E +    + G+   R  Q RA          LG   +A+   
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAH 210

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            + L        +          G       +F  A E     + L ++ K       + 
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
             LG   + + +Y+KA + HLK + + +   +      A   L   Y  L N ++A+   
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330

Query: 575 QQVLYIDKRF-------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
           ++ L I +               S    + GL             ++ S L  
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +++P   EA    G  +A   +   AI     A   
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           +P           +      +  A+  L   L  +P    +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 477 EFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
            FE N      +   E G+   K  +   A     A  + + E + A+  LGL  +   +
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
              A  A   A  LD   +     L   + +  N+  AL  L+  L    ++ 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 443 QSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
            +NP    E     G +   L    EA        + EP   +     G+   + +    
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A+  L+    LD ++ + +  L ++ ++      A  +    +     +
Sbjct: 70  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 19/97 (19%), Positives = 30/97 (30%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E           LAN  +A    + V   +    +A+   GL      +   AI  L+  
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             +DP +I      A  +        A+    A L  
Sbjct: 78  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 24/101 (23%), Positives = 37/101 (36%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           MY E  +  G +      L  A   F    Q  P   EAW+  G  +A   +   AI  L
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + A   +P    +     + +    + NAA+  L A +   
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             +++     GL++  +    +A  A     Q +    EAW  L     +      A+  
Sbjct: 15  MYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           L     +D +    +    +          A+  L + L   P
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 10/64 (15%), Positives = 18/64 (28%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            GL +  L    +A     +    +P   E             +   AI   + A  L+ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 651 DSME 654
             + 
Sbjct: 83  KDIA 86

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++  +  E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRA 110

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 77.4 bits (192), Expect = 4e-17
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+   
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KALE +PN+A+                                  A+  LG A    G+Y
Sbjct: 68  KALELDPNNAE----------------------------------AWYNLGNAYYKQGDY 93

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            +A E + KA++LD N  EA  +L    Q  
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.3 bits (189), Expect = 7e-17
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           A+E  Q+ L +D   ++A    G      G
Sbjct: 96  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.3 bits (189), Expect = 9e-17
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
            +D   ++A++  G   +  G + +AI+     L +DP+N E      +     G
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 73.6 bits (182), Expect = 7e-16
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
           +  EAW   G A    G+  EAI+   KALE +PN+A+     G  
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.0 bits (165), Expect = 1e-13
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.6 bits (130), Expect = 6e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 34  KALEL-DPNNAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 88  YKQGDYDEAIEYYQK 102

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 76.6 bits (189), Expect = 6e-17
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 27/139 (19%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            ++A    + G   +K KDF  A       ++LD  N + Y           ++ +  + 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA+++ R     +                           K  +KA    G       
Sbjct: 65  CEKAVEVGRETRADY---------------------------KLIAKAMSRAGNAFQKQN 97

Query: 600 QHKKAIKDLSSGLGIDPSN 618
               A++     L      
Sbjct: 98  DLSLAVQWFHRSLSEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +   A  A K  G A     +  +A     KA+E +P++    + +  V F+ K F   V
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 EDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           +     V++ +E ++       A +  G A     +   A +   +++   R+
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +  +  A   +D+ ++ DP        +      +++    +    +A++   
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 447 SA-------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
                     +A  R G A     +   A+Q   ++L    +
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 8/91 (8%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------E 620
           EKA     + + +D      Y+ +  +     +  + ++     + +            +
Sbjct: 25  EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            +    + +    +   A++ +  +L    D
Sbjct: 85  AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y + +     ++ C+KA+++             A    G AF        A+  
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 126 WEKGYEHALHQSADLKQFL 144
           + +       +  +L + +
Sbjct: 106 FHRSLS--EFRDPELVKKV 122

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 16/85 (18%), Positives = 34/85 (40%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
           A    G   +     +KA       + +DPSNI     +A+ Y    ++ E ++  + A+
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 647 DLELDSMEKFVLQCLAFYQKEIALY 671
           ++  ++   + L   A  +   A  
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQ 94

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
              K+  N A + K F    +   K+I +D     F  ++      E K+A  +   ++ 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 408 LKEDP-------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           ++          +  +A+   G A   Q +L  A+  F  ++      
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 531 GEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           G   +A   + KAI      ++  E +  L   ++ L    KA   L   +         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                ++L+ LG++++ ++ L   +     +             I  Y++AI  Y   LD
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD-----------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 568 EKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            +A+   ++ +      K  ++ Y   G     LG+++KA   L++G+   P++      
Sbjct: 7   AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
            A   + +G Y + ++     +    D         +  Y++ I  Y
Sbjct: 67  YAMVLYNLGRYEQGVELLLKIIAETSDDET------IQSYKQAILFY 107

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 395 GKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           G  A A+  +++ +    +     E  +G G+      E   A +     ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADIL-HERGI 491
                     LG   + ++ L K +    +   I  +++ I
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 430 ELEAAISDFTEAIQ---SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
               A+  + +AI          E +   G     LGE  +A   L+  ++  PN   + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +V +    +   VE L   +    +++           +I  YK+A   +     L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK--L 111

Query: 547 DRNF 550
           D  +
Sbjct: 112 DETW 115

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
            K+    Y  LG    ++GEY+KAE      ++   N             +L   E+ +E
Sbjct: 23  GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82

Query: 573 CLQQVL 578
            L +++
Sbjct: 83  LLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G      G+Y  A ++    +K+ P +    +            E  +    + I  
Sbjct: 31  LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                                 E IQ   +A+ F  +  D
Sbjct: 91  TSDD------------------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 54  KAIRI--LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           KAI        LA+ Y           +  L  ++         ++  P      +    
Sbjct: 15  KAIASGLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69

Query: 112 AFSALGRKEEALSVWEK 128
               LGR E+ + +  K
Sbjct: 70  VLYNLGRYEQGVELLLK 86

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 19/122 (15%), Positives = 37/122 (30%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516
               A+ +++ +   L        +  D ++      +       A          D  N
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
                 L        ++++A + +  A  L +N      H  Q    L    KA EC + 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 577 VL 578
           V+
Sbjct: 130 VI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN+S  T +  A++S    K           +  + ++        + +    E+A    
Sbjct: 7   ENESISTAVIDAINSGATLKDI-------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF 59

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           + +   D            +     Q ++A    +    +  ++   ++    C   +  
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

Query: 635 YREAIKDYDAALDLELDS 652
             +A + ++  +    D 
Sbjct: 120 PLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.4 bits (175), Expect = 8e-15
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S      N+G+   A   F  +   D    + ++G       + + + A   +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            +        GQ +  L   ++A +     ++   +  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.4 bits (175), Expect = 9e-15
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              D   +   L     +  +             + G  ++AE         D   ++  
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
             L   YQ     ++A +       + K         G     L    KA +     +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 615 DPSNIECLYLRASCY 629
                E L ++A  Y
Sbjct: 134 SND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 68.7 bits (168), Expect = 7e-14
 Identities = 12/112 (10%), Positives = 26/112 (23%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            I        + +         +  +E A   F      +    +             + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
            +A    + A     N    +   G    + K    A E     ++   + K
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +         +            G   EA         ++  + D +     +    + F
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             A +  +    L K + +   + G     +    KA+E     IQ   +
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 1/105 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +     +A      L     Y +  I   A  Y   E  +        A  L      
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149
                G     L    +A   +E   +H+  +   +K    L+ +
Sbjct: 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +VD+ +        + ++  A  ++             +   G  +   +    A   F 
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 440 EAIQSNPSAGEAWKRRGQA 458
             IQ +    E  K + Q+
Sbjct: 129 LVIQHSN--DEKLKIKAQS 145

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 21/102 (20%), Positives = 43/102 (42%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G Y  A+  + + +K +P   +    R        E + A+ D  E IQ  P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
           +  + + R+  A  A+ +  +A+    KAL+ + +  +    
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
                    NP      K +G      G+  +A++  ++A++  P  A +   R     K
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
             +F  A++D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 34/159 (21%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
                  P+ A ++  +G   F+  D+  A++  +  +K + ++   Y+      + + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           ++ A +   + IQL+                                    F K Y  + 
Sbjct: 66  FQLALKDCEECIQLEPT----------------------------------FIKGYTRKA 91

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
             L  +  + KA+      L +D S  E       C  A
Sbjct: 92  AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 68.0 bits (167), Expect = 8e-14
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++AI+  +   A+ Y      NRA CY++L   +  ++DC++ +QL+PT ++ Y  K  A
Sbjct: 40  TEAIK-RNPKDAKLY-----SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93

Query: 113 FSALGRKEEALSVWEKGYEH 132
             A+    +A+ V++K  + 
Sbjct: 94  LEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                 +P     +  +G     + +   A+  +TEAI+ NP   + +  R      L E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
              A++D  + ++ EP        +       KD+  A++     + LD   K A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A++   + +  + + +K Y  R      L + + A+KD    + ++P+ I+    +A+
Sbjct: 33  PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+ +Y +A+  Y  ALDL+
Sbjct: 93  ALEAMKDYTKAMDVYQKALDLD 114

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 14/74 (18%), Positives = 34/74 (45%)

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
               +++   +     +G      G + +A+K  +  +  +P + +    RA+CY  + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 635 YREAIKDYDAALDL 648
           ++ A+KD +  + L
Sbjct: 66  FQLALKDCEECIQL 79

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
            M+K   NE  +   +       +++I  +        +R        ++  A+   ++ 
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
           ++ +P + +    +  A    ++   A+  + +A+  + S  EA     +   A
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G A +   +Y+ AI ++ Q L   P  P  L  R  A +   + E A  D   A   +
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI--VNFKFKDFNAAV 503
           P   +AW R G AR  + +   A +   K +E E N      +RG+     K ++ N   
Sbjct: 76  PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 504 E 504
           E
Sbjct: 136 E 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +     +  K  G A  A  E  +AI   ++AL   P +   L  R            A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           ED      +D +   A++ LGLA   + +YK A+EA+ K I+ + N            + 
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD-----AMKRG 120

Query: 564 LANSEKALE 572
           L  +++ +E
Sbjct: 121 LETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 39/177 (22%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
               +D L   G      K+++ A++  +  + +   N    +    A S+ G+++KA E
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
               A  +D  +                                  SKA+   GL    +
Sbjct: 67  DAELATVVDPKY----------------------------------SKAWSRLGLARFDM 92

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
             +K A +    G+  + +       R      +   +  I++ +   +   D ++ 
Sbjct: 93  ADYKGAKEAYEKGIEAEGNGGSDAMKR-----GLETTKRKIEEANRGAEPPADDVDD 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++A+  +              NRA  YS    H+    D + A  +DP   +A+   G A
Sbjct: 35  TQALS-IAPANPIYL-----SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88

Query: 113 FSALGRKEEALSVWEKGYEHA-LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSS 171
              +   + A   +EKG E      S  +K+ LE  +         +     DV ++  +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGA 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           ++E   AI  +T+A+   P+       R  A +A G+  +A +D   A   +P  +    
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL--ALSSIGEYKKAEEA 539
             G+  F   D+  A E     ++ +    S     GL      I E  +  E 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 20/102 (19%), Positives = 39/102 (38%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KA++   Q L I          R       GQH+KA +D      +DP   +       
Sbjct: 28  SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
               + +Y+ A + Y+  ++ E +     + + L   +++I 
Sbjct: 88  ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
                 S      G       ++ KAI   +  L I P+N   L  RA+ Y A G++ +A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 639 IKDYDAALDL 648
            +D + A  +
Sbjct: 65  AEDAELATVV 74

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           +         A Q+  EA +    + I++NP   E W   G+      +   ++    +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 476 LEFEPNSADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           L+    +A++      V +              +   + LD    +A   L         
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

Query: 533 YKKAEEAHLKAIQLDRN 549
           Y +A E   K + L+  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 7/153 (4%)

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
            ++  A ++ L   ++ + +N   +  LG       +Y  +  A+ +A+QL     E + 
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82

Query: 556 HLTQFY---QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            L            + +    + + L +D     A  L          + +AI+     +
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            ++   I     R     +I   +   +  D  
Sbjct: 143 DLNSPRIN----RTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
              ++    + +      ++ +P   E     G    +Q +   ++  + +A+Q      
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 450 EAWKRRGQARAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           E +               + +    + KAL  + N    L       F   ++  A+E  
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 507 SACVKLDKENKSAYTYL 523
              + L+    +    +
Sbjct: 139 QKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
             +S    +   +A    I+ +    E W  L ++Y    +   +L   +Q L +    +
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 586 KAYHLRGLLLHGLGQHK---KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           + Y     +L+         +    +   L +D + I  L L AS       Y +AI+ +
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 643 DAALDL 648
              +DL
Sbjct: 139 QKVMDL 144

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQS 444
           G   + +  Y++++  + Q L+      E      T   +   Q       +   +A+  
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           + +   A               +AI+   K ++      +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           Q  R   +        +    N E  L+ LQ  +  + + S+ + L G        +  +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYR---EAIKDYDAALDLE 649
           +      L +   N E     A+  +         +     D AL L+
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
             Q ++   A   ++ D+ L  D     AL+   +    Q     AI  + + +  N   
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP- 147

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                     R  L ES+   + L +  + E
Sbjct: 148 -------RINRTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
              +  ++ L   +  +P N E   L    Y    +Y  ++  Y  AL L  ++ E  + 
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE--LY 81

Query: 659 QCLAFYQKEIALYTASK 675
             LA       LY  + 
Sbjct: 82  AALA-----TVLYYQAS 93

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA   ++L      I DC+KA++ DP  ++AYI K  A  A+     AL   +     
Sbjct: 42  SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101

Query: 133 ALHQSADLKQFLELEELLTAAKQDR 157
              +  +     E+++L   A Q R
Sbjct: 102 DA-EVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 24/111 (21%), Positives = 46/111 (41%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  + +++K  P        R  A A       AI+D  +AI+ +P
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           +   A+ R+  A+ A+ E   A++ L  A   +    +    R I    +K
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 20/104 (19%), Positives = 35/104 (33%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  +  G+      +   A++  ++ ++  P  A     R     K   F  A+ D +  
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++ D     AY     A  ++ EY  A E    A   D      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
            A+     G   F   D+  AV+  +  +K   E+   Y+    AL+ +  + +A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           KAI+ D NF+ A+         +     ALE L      D   +     R +
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +TE I+  P     +  R  A A L    EAI D +KA+E +PN       +  
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                K++ +A+E L A    D E  +  +   +       Y KA + 
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ----LYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 18/102 (17%), Positives = 41/102 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A++   +++      ++ Y  R   L  L    +AI D +  +  DP+ +     +A+
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
              A+ EY  A++  DAA   + +       + +     + +
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 40/283 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG+ ++++ +Y SAI  F +                            + D  E  + 
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAES---------------------KLIFVKDRIEKAEF 145

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                E++    Q   ++  + +A +   +   +                  K +  A+ 
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205

Query: 505 DLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLE 552
                  + +  K           +GL  +S  +Y+ A     +AI +        +  +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSG 611
           A+  +TQ +  L   +KA E   + +   ++     Y      L  L       + +   
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325

Query: 612 L------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   +     +     A  YH    +++A   +     +
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 31/224 (13%)

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNFKFKDFNAAVE----- 504
                   E    + DL   ++ +      L E      RG+     +++ +A++     
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 505 -DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGH 556
                 VK   E    +  +  +   + +   + +   +A ++ +          +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSS 610
               + DL   E A+   Q+   + +         +  +  GL  +   Q++ AI     
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

Query: 611 GLGID------PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            + +       PS  +  +L    ++ +G+  +A + +   +  
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
               ++  +Y  AIS F +         +  +    L   G  +  Q + E AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 442 IQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--------FEPNSADILH 487
           I         PS  +A+    Q    LG+  +A +  SK +            +  + L 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
              +     +      + L +   L  + +     +         ++KA    LK  Q+ 
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

Query: 548 RNFLE 552
           +    
Sbjct: 370 QLIQG 374

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 16/86 (18%), Positives = 28/86 (32%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459
                + +L +           G   A   + +AA+     A+  +P+   AWK  G+  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 460 AALGESVEAIQDLSKALEFEPNSADI 485
              G+   A Q     L    +  D 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
              + L   L    ++  +    G    + + F+AA+  L A +  D     A+ +LG  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDL 564
           L   G+   A +A    +   ++    +    L  F + L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
            A  E L A +    +N      LG   +   ++  A      A+  D  +  AW  L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 560 FYQDLANSEKALECLQQVLYIDKR 583
             Q   +   A +  +  L   + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           +   E L+ +L             G       Q   A+  L + L  DP+          
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
                G+   A + +++ L   
Sbjct: 62  TLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             E     +    + +     L + Y +    + AL  L+  L  D  +S A+   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            G G    A +   SGL    S  +           + E +  ++       LE
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGD--------QQVVKELQVFLRRLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
                Y++ E     +     AL  DPT   A+   G      G +  A   WE G   A
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 134 LHQSADLKQFLELEELLTAAKQDRSV 159
                D +   EL+  L    ++ ++
Sbjct: 84  -QSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++  R + G       ++ +A+      L  DP Y  A    G     Q +   A   + 
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 440 EAIQSNPSAG--EAWKRRGQARAALGESVEAIQ 470
             + +  S G  +  K        L        
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 28  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R  + E    +  S L
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 173 TVSESGLNANDKMSETSENHNKSD 196
               + L A ++  E  E     +
Sbjct: 140 HSYLTRLIAAERERELEECQRNHE 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G       KY  A + + + +  +P+       R       ++ E A++D   A++ +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
             + +A    GQ +  +    EAI +L +A            +      +          
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 506 LSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +  + E  S  T L  A     + E ++  E H     +            ++  D
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188

Query: 564 LANSEKALE 572
           +      ++
Sbjct: 189 MDELFSQVD 197

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 18/89 (20%), Positives = 35/89 (39%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 21  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKF 656
           C   +  Y EAI +   A  L  +    F
Sbjct: 81  CQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA  L E+G   F  + +  A       +  +      YT   L    + + ++A     
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            ++ +A       +  +P        RA CY  + +  +A+ D   AL+L
Sbjct: 18  RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 33  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKR 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 18/102 (17%), Positives = 39/102 (38%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +A    GQ +  +    EAI +L +A            +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 20/109 (18%), Positives = 39/109 (35%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
                  + +  K +G       +  EA     +A+   P  A     R +   K +   
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            A+ D    ++LD ++  A+ +LG     +  Y +A     +A  L + 
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 21/111 (18%), Positives = 42/111 (37%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R+   A + +  AI  NP     +  R      + +  +A+ D  +ALE +  S     
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             G    + + ++ A+ +L     L KE +  +     +   I + K+   
Sbjct: 82  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 34/144 (23%)

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
               +  SA  L E+G   F  + +  A       +  +      YT   L    + + +
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A     +A++LD                                      KA+   G  
Sbjct: 61  QALADCRRALELDGQ----------------------------------SVKAHFFLGQC 86

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSN 618
              +  + +AI +L     +    
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 26  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C   +  Y EAI +   A  L 
Sbjct: 86  CQLEMESYDEAIANLQRAYSLA 107

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A    E G   +K KDF+ A++      +LD  N +  T         G+Y K  E   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI++ R   E +                           ++ +KAY   G       ++K
Sbjct: 64  AIEVGRENREDY---------------------------RQIAKAYARIGNSYFKEEKYK 96

Query: 603 KAIKDLSSGLGIDPSN 618
            AI   +  L    + 
Sbjct: 97  DAIHFYNKSLAEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 68.1 bits (167), Expect = 8e-14
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+        AY  +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  +D+  + DP     +  +      + +         +AI+   
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 447 SAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              E       A+ R G +     +  +AI   +K+L       
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y +   +      C+KA+++     +       AY   G ++    + ++A+  
Sbjct: 42  TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101

Query: 126 WEKGYEHALHQSAD-LKQFLELEELLTAAKQDR 157
           + K      H++ D LK+  + E++L   +Q+R
Sbjct: 102 YNKSLA--EHRTPDVLKKCQQAEKIL--KEQER 130

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------- 620
           + AL+   +   +D         +  +    G + K  +     + +   N E       
Sbjct: 21  DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649
                 + Y    +Y++AI  Y+ +L   
Sbjct: 81  AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 12/73 (16%), Positives = 33/73 (45%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                A+K       +DP+N+  +  +A+ Y   G+Y +  +  + A+++  ++ E +  
Sbjct: 18  KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77

Query: 659 QCLAFYQKEIALY 671
              A+ +   + +
Sbjct: 78  IAKAYARIGNSYF 90

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           P  G+ + R+  A   L    EA +   + L+ E N+  +
Sbjct: 69  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI+ LD      Y      NR+  Y++   ++    D  K + L P   + Y  K  A
Sbjct: 28  SEAIK-LDPHNHVLY-----SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
              L R EEA   +E+G +H
Sbjct: 82  LEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V L  +    Y+    AL  +  +++A+  + + ++ +
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            + L E+G       + + A++  S  +KLD  N   Y+    A +  G+Y+KA E   K
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
            + L  +                                  + K Y  +   L  L + +
Sbjct: 64  TVDLKPD----------------------------------WGKGYSRKAAALEFLNRFE 89

Query: 603 KAIKDLSSGLGIDPSNIEC 621
           +A +    GL  + +N + 
Sbjct: 90  EAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 426 AFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           A     ++ A+  ++EAI+ +P     +  R  A A  G+  +A +D  K ++ +P+   
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
               +         F  A       +K +  N      L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 53.3 bits (129), Expect = 7e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           + AL+C  + + +D      Y  R       G ++KA +D    + + P   +    +A+
Sbjct: 21  DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
               +  + EA + Y+  L  E
Sbjct: 81  ALEFLNRFEEAKRTYEEGLKHE 102

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 69.9 bits (172), Expect = 2e-14
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 374 SKSKSISVDFRL-----SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
           S ++   ++  L     ++G     +G Y +A+  +++ +K DP        R       
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            E + A+ D    I+ +    + + R+     A+ E  +A +    AL+ +P++ +    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           ++     P  A     +G   FK  D+  A+   +  VK D EN   Y+     L+ + E
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           +++A +     I+LD                                    F K Y  + 
Sbjct: 63  FQRALDDCDTCIRLDSK----------------------------------FIKGYIRKA 88

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             L  + +  KA +     L +DPSN E 
Sbjct: 89  ACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C ++L   +  + DCD  ++LD   ++ YI K     A+    +A   +E   + 
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 13/88 (14%), Positives = 31/88 (35%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + EA++ +P     +  R      L E   A+ D    +  +         +  
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSA 519
                ++++ A       +++D  N+ A
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A+    + +  D   +  Y  R   L  L + ++A+ D  + + +D   I+    +A+
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C  A+ E+ +A + Y+ AL ++
Sbjct: 90  CLVAMREWSKAQRAYEDALQVD 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 2e-14
 Identities = 114/716 (15%), Positives = 204/716 (28%), Gaps = 258/716 (36%)

Query: 65  QSYEIQDICN---RAF-----CYSQLELHKHVI--RDCDKALQLDPTLLQAYILKGCAFS 114
             Y+ +DI +    AF     C    ++ K ++   + D  +     +     L    F 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69

Query: 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTV 174
            L  K+E +                +++F+E        + +      Y     MS +  
Sbjct: 70  TLLSKQEEM----------------VQKFVE-----EVLRIN------YKFL--MSPIK- 99

Query: 175 SESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234
                         +E    S +     + RD             L N     AK   +V
Sbjct: 100 --------------TEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKY--NV 131

Query: 235 PVSKSGLHINGKLREVSENHN-------GSSDGSKSTHASRDASEINRQSSDDFDI---- 283
              +  L +   L E+    N       GS  G K+  A         Q   DF I    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-KTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 284 ---CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD 340
              CN P                   V + L      + D N  S S   S+I     S 
Sbjct: 189 LKNCNSP-----------------ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSI 230

Query: 341 STESRSKLSFK------------WDMLKETSNEAKRNKKF---C---VTRISKSKSISVD 382
             E R  L  K             +        AK    F   C   +T  ++ K +  D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKILLT--TRFKQV-TD 279

Query: 383 FRLSRGIAQVNEGKYAS------AISIFDQILKEDP-MYPEALIGRGTARAFQRELEA-- 433
           F  +     ++   ++         S+  + L   P   P                E   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------------EVLT 324

Query: 434 ----AISDFTEAIQSNPSAGEAWKRRGQAR--AALGESVEAI-----QDLSKALEFEPNS 482
                +S   E+I+   +  + WK     +    +  S+  +     + +   L   P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 483 ADI----LHERGIV--NFKFKDFNAAVED-LSACVK---LDKENK-SAYTYLGLALSSIG 531
           A I    L    ++  +    D    V   ++   K   ++K+ K S  +   + L    
Sbjct: 385 AHIPTILL---SLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 532 EYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQD----------LANSEKALE-CLQQV 577
           + +     H   +    + + F      L   Y D          L N E      L ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 578 LYIDKRF--------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +++D RF        S A++  G +L+ L Q K                           
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-------------------------- 529

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQC--------------LAFYQKEIALY 671
                Y+  I D D   +  ++++  F+ +               +A   ++ A++
Sbjct: 530 -----YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 40/299 (13%), Positives = 94/299 (31%), Gaps = 80/299 (26%)

Query: 476 LEFEPNSADILHERGIV-----NFKFKDFNAA-VEDLSACVKLDKE---------NKSAY 520
           ++FE         + I+      F   +F+   V+D+   +   +E           S  
Sbjct: 7   MDFETGEHQ-YQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 521 TYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             L   L S  E   +K  E  L   +++  FL     +    +  +   +     +  L
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVL---RINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 579 YID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           Y D + F+K Y++                                  R   Y  +   R+
Sbjct: 120 YNDNQVFAK-YNVS---------------------------------RLQPYLKL---RQ 142

Query: 638 AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC----WFDI------DG 687
           A+ +   A ++ +D +       +A     + +  + K+  +      W ++      + 
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 688 DIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSI 746
            ++ L  +    ++ P N   +      ++  +   +   +    +K     LLV  ++
Sbjct: 198 VLEML--QKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A+  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
           E  ++ L + ++       +++ +  G     L  ++KAI        ++  L       
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
              +   + Y A+G + +A+   +  L++
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 454 RRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD 498
           R  Q RA          LG   +A+    + L        +          G       +
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           F  A E     + L ++ K       +   LG   + + +Y+KA + HLK + + +   +
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 553 ------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
                 A   L   Y  L N ++A+   ++ L I + 
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 24/148 (16%)

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
           G           A+    + +      G+   +  +  A          LGE   A +  
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYY 72

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            K L            A   +  G      +D+  A++     + + +E K       A 
Sbjct: 73  KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             LG A +++G + +A     K +++ R
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI  L+   A  Y      NR+  Y + E + + + D  +A++LD   ++ Y  +  +
Sbjct: 37  SQAIE-LNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
             ALG+   AL  +E   +   H      ++ E  +++     +R++  +    + + SL
Sbjct: 91  NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

Query: 173 TVSESGLNANDK 184
            +    +     
Sbjct: 151 DIESMTIEDEYS 162

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +         Y +AI  + Q ++ +P        R  A         A+ D T AI+ + 
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVE 504
              + + RR  +  ALG+   A++D    ++ +P+  D   +    N   K   F  A+ 
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138

Query: 505 D 505
            
Sbjct: 139 G 139

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
            R   N     F AA+ D    VK+   +K A                 ++A  +AI  D
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGD 140

Query: 548 RN 549
            +
Sbjct: 141 EH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 36/165 (21%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI+LD+ +                                   K Y+ R      LG+ +
Sbjct: 73  AIELDKKY----------------------------------IKGYYRRAASNMALGKFR 98

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE--YREAIKDYDAA 645
            A++D  + + + P + +       C   + +  +  AI   +  
Sbjct: 99  AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 18/100 (18%), Positives = 45/100 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 19/82 (23%), Positives = 41/82 (50%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A++   Q + ++   +  Y  R L       +  A+ D +  + +D   I+  Y RA+
Sbjct: 30  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+G++R A++DY+  + ++
Sbjct: 90  SNMALGKFRAALRDYETVVKVK 111

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C+ +LE +     +  KA++ D   ++A   +  A   LGR ++A+   ++    
Sbjct: 69  RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443
            G      G Y  A++ + Q L  D    +  +    R        + + A ++ ++AI+
Sbjct: 34  EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            +    +A  RR QA   LG   +A+ DL + +  EP +      
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 428 QRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
             +   A++ +T+A+  + +  +     + R      L +  +A  + SKA+E +     
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
            L+ R     K    + AV DL  CV L+ +NK  
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSSI 530
           +      +S + L + G   FK  D+  A+   +  + LD   +               +
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y KAE    KAI+ D                                      KA + 
Sbjct: 79  EDYDKAETEASKAIEKDGGD----------------------------------VKALYR 104

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
           R   L  LG+  +A+ DL   + ++P N   
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L  + KA  + S  +  D  +++ LY R+     +G   +A+ D    + LE
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIEC--LYL-RASCYHAIGEYREAIKDYDAALDLE 649
           G +  A+   +  LG+D +  +   L+  RA+C+  + +Y +A  +   A++ +
Sbjct: 42  GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 68.2 bits (166), Expect = 2e-12
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 16/176 (9%)

Query: 504 EDLSACVKLDKENKSAYTYLGLAL-----SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
                  K+     +  T    A             +A E   + +Q    F  A     
Sbjct: 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 240

Query: 559 QFYQ--------DLANSEKALECLQQVLYID--KRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                       D          +  ++ +      S  Y ++ +     G+  ++ + +
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           ++G+ ++ S +    L    Y   G  REA   Y  A +L   +   + ++   F 
Sbjct: 301 NTGIDLEMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQ 355

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 17/189 (8%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEAWKR 454
              + + + K  P     L     A  +      + L  A     E +QS+P    A   
Sbjct: 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE 238

Query: 455 RGQARAAL--------GESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVE 504
           +                +      ++   +      N + I   + +        + + +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQD 563
            ++  + L+  +   Y  LG      G  ++A +A+L A  L        W     F   
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 564 LANSEKALE 572
           +      L+
Sbjct: 358 VPYVVPYLD 366

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQI--LKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
             +      ++E + A+  +  D I  L E          +  +   + + + +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
            I    S    +   G+     G + EA      A    P +  +      +
Sbjct: 303 GIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 19/150 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A   LG   + +  + +A  +     Q  +   +      A   +    +   N + A 
Sbjct: 27  GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86

Query: 572 ECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI 619
            C  +   +           S   +    +    G    A ++    L       D   I
Sbjct: 87  RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146

Query: 620 ECLYLR-ASCYHAIGEYREAIKDYDAALDL 648
            C +              EA + +  A D+
Sbjct: 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584
           A  +        +A    +        A   L   Y  +   ++A    Q +    ++  
Sbjct: 2   AFEAHDYALAERQAQ-ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 585 -----SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI-ECLYLRASCYHAI 632
                 +A H  G++    G    A +      +L + L  DP       Y  A+     
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 633 GEYREAIKDYDAALDL 648
           G+   A ++Y+ +L  
Sbjct: 121 GDLAGARQEYEKSLVY 136

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             YA A      +L        A    G   AF    + A + F    Q    +G+    
Sbjct: 6   HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---H 62

Query: 455 RGQARA---------ALGESVEAIQDLSKALEF-------EPNSADILHERGIVNFKFKD 498
             + RA           G    A +   +  E           ++   +E   V   F D
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              A ++    +   ++         A+  LG          +A++  L+A  +  
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 66.7 bits (162), Expect = 4e-12
 Identities = 37/259 (14%), Positives = 70/259 (27%), Gaps = 23/259 (8%)

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILH 487
                ++  FTE    + SA +AW      R   G+     +           +  +   
Sbjct: 20  MSEARSLDLFTEITNYDESACDAW----IGRIRCGDTDRVTLFRAWY------SRRNFGQ 69

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAI 544
             G V       NA +        +     S            ++ G Y  A EA   A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602
                 L AW     +          ++ ++       +F    A    G+    L    
Sbjct: 130 VAGSEHLVAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 603 KAIKDLSSGLG---IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           +A + L+        +       +  A    + G    A+   +       +      L+
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248

Query: 660 CLAFYQKEIALYTASKINS 678
             ++    +   TA +I S
Sbjct: 249 DPSY---RLKTTTAEQIAS 264

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 11/75 (14%), Positives = 28/75 (37%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
               L           +A     + ++ D +++  + HL + Y+ L  ++ A++   Q +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 579 YIDKRFSKAYHLRGL 593
            + +       L  L
Sbjct: 69  EVAREEGTQKDLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           EDP  P                  A++ F E ++++P     +   G+    L  + +AI
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 470 QDLSKALEFEPNSAD 484
              ++ +E       
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
           +P      +     + K  + + A+      V+ D +    Y +LG     +     A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 539 AHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKA 570
            + + I++ R          L          E  
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                   L Q +    N+ +AL   ++++  D  +   Y+  G L   L +   AI   
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           + G+ +                 + E ++A    +  
Sbjct: 65  AQGIEVAREEGTQ--------KDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  + + +     +   ++ ++ DP  +  Y   G  +  L R ++A+  + +G E A
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
             +    K   EL++    A+ 
Sbjct: 72  -REEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 8/65 (12%), Positives = 18/65 (27%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
                +             +A+      +  DP  +   Y     Y  +    +AI  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 644 AALDL 648
             +++
Sbjct: 66  QGIEV 70

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +     +     + A+++F+++++ DP Y       G         + AI  + + I+  
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDL 472
              G       +  + L ++    + L
Sbjct: 72  REEGTQ-----KDLSELQDAKLKAEGL 93

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 43/318 (13%), Positives = 92/318 (28%), Gaps = 41/318 (12%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARA 426
           +  +  ++  +F   R    +N+G    A  +    L+E P         A    G    
Sbjct: 5   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 64

Query: 427 FQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALE--- 477
            + EL  +++   +  Q             +  ++ +   A G    A +   KA +   
Sbjct: 65  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124

Query: 478 -----FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSS 529
                  P    ++  R  + + +   + A     + +++       +       L   S
Sbjct: 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184

Query: 530 I--GEYKKAEEAHLKAIQLDRNFLEAWGHLT-------QFYQDLANSEKALECLQQVLYI 580
           +  G+   A     +   L  N       ++        ++Q   +   A   L+     
Sbjct: 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244

Query: 581 DKRFS----KAYHLRGLLLHGLGQHKKAIKDL------SSGLGIDPSNIECLYLRASCYH 630
           +   +      +         LG+ + A   L      +  L +       L L    Y 
Sbjct: 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304

Query: 631 AIGEYREAIKDYDAALDL 648
             G   +A +    AL L
Sbjct: 305 QAGRKSDAQRVLLDALKL 322

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + I          Y      N+A    +L  +   I+ C + L+   T     I     
Sbjct: 28  DQLIT-AQPQNPVGY-----SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
           +  L   + A+   +     
Sbjct: 82  Y-RLELAQGAVGSVQIPVVE 100

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +  +   E+G   FK   +  AV      +    +N   Y+   +AL  +GEY +A +  
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + ++               Y+ L  ++ A+  +Q  +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPV 98

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G +   +G Y  A+  +DQ++   P  P     +  A     E   AI    + ++   
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 447 SAGEAWKRR------GQARAALGESVEAIQDLSKALE 477
           +A     R         A+ A+G     + ++ +  E
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +G +    G   EA+    + +  +P +      + +   K  ++  A++     
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           ++     +       L    +   + A  +    + 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A+ C  Q++    +    Y  + + L  LG++ +AI+    GL    +      +R+ 
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655
             + +   + A+      +  E+D + +
Sbjct: 80  LQYRLELAQGAVGSVQIPVV-EVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + + I + P     +  +  A   LGE  +AIQ   + L +   +  +   R  
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 492 VNFKFKDFNAAVEDL-SACVKLDKENKSA 519
           + ++ +    AV  +    V++D+  +  
Sbjct: 80  LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           G +++A+      +   P N      +A     +GEY +AI+     L   
Sbjct: 18  GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 472 LSKALEFEPNSADILHERGIV 492
             KALE +PN+A+     G  
Sbjct: 66  YQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.4 bits (127), Expect = 9e-09
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 34/115 (29%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                    A+  LG A    G+Y +A E + KA++LD N  EA  +L    Q  
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.0 bits (113), Expect = 7e-07
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
            ++A++  G   +  G + +AI+     L +DP+N E  Y   + Y+  G+Y EAI+ Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 644 AALDL 648
            AL+L
Sbjct: 68  KALEL 72

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 46.6 bits (112), Expect = 9e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIG 633
              L +DP+N E      +     G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  RNWSKAIRI------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +++  AI+       L+   A  Y      NR+  Y + E + + + D  +A++LD   +
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           + Y  +  +  ALG+   AL  +E   +   H      ++ E  +++     +R++  + 
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134

Query: 164 DVSNSMSSLTVSESGLNAN 182
              + + SL +    +   
Sbjct: 135 HKRSVVDSLDIESMTIEDE 153

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            R   N     F AA+ D    VK+   +K A 
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              Y +AI  + Q ++ +P        R  A         A+ D T AI+ +    + + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADIL--HERGIVNFKFKDFNAAVEDLSACVK 511
           RR  +  ALG+   A++D    ++ +P+  D    ++      K K F  A+        
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA------- 131

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            D+  +S      L + S+    +     L+  ++  +F++  
Sbjct: 132 GDEHKRSVVD--SLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y+ A + + +AI+L+ +    +G+ +  Y        AL    + + +DK++ K Y+ 
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
           R      LG+ + A++D  + + + P +               E  + +K       +  
Sbjct: 80  RAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAG 132

Query: 651 DSMEKFVLQCLAFYQKEI-ALYTASKI-NSEFCWFDIDGDIDPLFKEYWCKRLHPKNV-- 706
           D  ++ V+  L      I   Y+  K+ + +     +   +         K+LH K    
Sbjct: 133 DEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD---QKKLHRKCAYQ 189

Query: 707 -CEKV 710
              +V
Sbjct: 190 ILVQV 194

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 45/106 (42%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
                 E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            D +  ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK  +N+  + K +       S++I ++     +  +R +A +    Y  A+    + 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR----RGQARAALG 463
           ++ D  Y +    R  +     +  AA+ D+   ++  P   +A  +        +    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           E   A  +  +++    +   +  E      K +D    +  +   ++  K+ K
Sbjct: 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 60.2 bits (147), Expect = 7e-10
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+    E+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK--------DLSSGLG 613
                Q+ L I +          +K  +         G+ K+A                G
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N              G+ ++     +   
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
                L +  +S G Y+ A     +A++                   L   Y+D    + 
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDLSSGLGI 614
           A   L   L I ++         +   +   +L    G++K+A        +     LG 
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147

Query: 615 D-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           D P   + L   A      G+Y E    Y  AL++
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 23/149 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+Y++ E  + +A+++ +        N  +   +L   Y      ++A    
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +          G+ K        G       +D P+  
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L    + Y   G++  A    +AA+  
Sbjct: 279 TTLKNLGALYRRQGKFEAAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 57.5 bits (140), Expect = 4e-09
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 24/154 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L L      +YK A      A+ +    L            +L   Y      ++
Sbjct: 70  TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 129

Query: 570 ALECLQQVLYIDKRFSKAYHLR--------GLLLHGLGQHKKAIKDLSSGLGI------- 614
           A    ++ L I ++     H           LL    G++++        L I       
Sbjct: 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189

Query: 615 -DPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            DP+  +     ASCY   G++++A   Y   L 
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 59.5 bits (145), Expect = 8e-10
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+   +E+
Sbjct: 86  ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLSSG----LG 613
                ++ L I            +K  +         G+++ A     + L+       G
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N            +  + R++    +   
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 23/148 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+ ++ E  + +A+++          N  +   +L   Y      + A    
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +           + + +      G       +D P+  
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALD 647
             L    + Y   G+   A    D A  
Sbjct: 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEKALECL 574
           L L      +YK+A      A+ +    L            +L   Y      ++A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 575 QQVLYIDKRFS--------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI--------DPSN 618
           ++ L I ++          K  +   LL    G+ ++        L I        DP+ 
Sbjct: 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALD 647
            +     ASCY   G+Y++A   Y   L 
Sbjct: 169 AKTKNNLASCYLKQGKYQDAETLYKEILT 197

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 29/160 (18%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQD 563
           +   +   +   GL          A     +A++                   L   Y+D
Sbjct: 1   MGSSHHHHHHSSGL-----VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 55

Query: 564 LANSEKALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLS-- 609
               ++A   L   L I ++         +   +   +L    G++K+A     + L   
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 115

Query: 610 -SGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              LG   P   + L   A      G+  E    Y  AL+
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  Q ++E A+    E +Q+ P    EA+   G A   LG+  +A+ +   A+E  
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 480 PNSADILHER---GIVNFKFKDF 499
           P+S  +   +    I+NF  KD 
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442
           +L      +N+G   +A+   ++ L+ +P+   EA    G A     + + A++++  AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 443 QSNPSAGEAWKRR 455
           + NP +     R+
Sbjct: 63  ELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               L   G  + A++ L   L  +P    E  YL  + Y  +G++++A+ +Y +A++L 
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 650 LDSME----KFVLQCLAFYQKEI 668
            DS      K V+  L FY K++
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEA 539
            +   L  +G       D   A++ L   ++ +   K  AY  +G A   +G+++KA   
Sbjct: 5   KTIKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
           +  AI+L+ +                     L    + +Y        +H
Sbjct: 58  YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 562 QDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
            +  + E AL+ L++ L  +     +AY+L G     LG  +KA+ +  S + ++P +
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
            L + G+ + A +A  + +Q +     EA+  +   Y+ L + +KAL   Q  + ++   
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 585 SKAYHLRGLL 594
                 + ++
Sbjct: 69  PALQARKMVM 78

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----------------QRELEAAISD 437
           + +   AI  + + L       E        +                   ++   AI  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
            ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   +   K K
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 498 DFNA 501
           +   
Sbjct: 171 EARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI----------CNRAFCYSQLELHKHVIRDCDKALQL 98
           +  + +A+           +I              N A CY++ + +   I    K L++
Sbjct: 58  IVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
           D   ++A    G A    G  EEA     K      +       +      L  A++
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 568 EKALECLQQVLYID--------KRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           ++AL+        D        K    + +L      +    + KAI   S  L ID +N
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           ++ LY         G   EA ++   A  L 
Sbjct: 122 VKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+                Y     AL      ++ ++  
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIV--------------KYKE---ALDFFIHTEEWDDQI 78

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 79  -LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            K K+I +   L+          Y  AI    ++LK D    +AL   G A  +   LE 
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140

Query: 434 AISDFTEAIQSNPSAGEA 451
           A  +  +A   NP+  + 
Sbjct: 141 AKENLYKAASLNPNNLDI 158

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI------------CNRAFCYSQLELHKHVIRDCDKAL 96
           +  +  A+  LD+L+ +    +               N + CY  +           + L
Sbjct: 31  IDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           + + T  +A   +  A  A  + +EA                DLK  L   
Sbjct: 91  KREETNEKALFRRAKARIAAWKLDEAE--------------EDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARA-----------FQRELEAAISDFTEAIQS 444
            Y  A++  D ++  +       +                     +L  A    +E ++ 
Sbjct: 33  AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             +  +A  RR +AR A  +  EA +DL   L   P +A ++  
Sbjct: 93  EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +G   +A +  S  L  + +N + L+ RA    A  +  EA +D    L   
Sbjct: 76  IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  Y  AI  +   L                          +      + +N        
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILR-------EKPGEPEWVELDRKNIPLYAN-------- 68

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q    +G+  EA +  S+ L+ E  +   L  R          + A EDL   ++  
Sbjct: 69  -MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 514 KENKSAYT-YLGLALSSIGEYKKAEEAHLK 542
               S     + +      E K        
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYS 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            S + L ++G   F  KD+  A++     +                    GE +  E   
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------REKPGEPEWVELDR 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                        + +++Q Y ++ +  +A E   +VL  ++   KA   R        +
Sbjct: 61  KNIP--------LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 601 HKKAIKDLSSGLGIDPSN 618
             +A +DL   L   P+ 
Sbjct: 113 LDEAEEDLKLLLRNHPAA 130

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            +    ++    +     +N G    A     ++LK +    +AL  R  AR    +L+ 
Sbjct: 56  VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 434 AISDFTEAIQSNPSAGEAWKR 454
           A  D    ++++P+A     R
Sbjct: 116 AEEDLKLLLRNHPAAASVVAR 136

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTA--------RAF----QREL 431
           RG     EGKY  A+  + +I+     +  +      +  A         A      +  
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

Query: 492 VNFKFKDFNA 501
              + +   A
Sbjct: 273 CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---------CNRAFCYSQLELHKHVIRDCDKALQLD 99
           L  + K +  L+   + S E              N A C+ +L+     I  C+KAL+LD
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
               +    +G A  A+   E A + ++K  +   +  A   Q    ++ +     
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L     AI+  +  L +D +N + L  R   + A+ ++  A  D+   L L 
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 34/161 (21%), Positives = 49/161 (30%), Gaps = 19/161 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             + I+ ERG V FK   +  A+      V           +L    S   E  +  +A 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVS----------WLEYESSFSNEEAQKAQAL 194

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
             A  L  N       L   +  L     A+E   + L +D    K    RG     +  
Sbjct: 195 RLASHL--N-------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
            + A  D    L + P+N       A C   I       K 
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434
           K++++ +   L+  +  +    +++AI   ++ L+ D    + L  RG A     + E A
Sbjct: 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 249

Query: 435 ISDFTEAIQSNPSAGEA 451
            +DF + +Q  P+   A
Sbjct: 250 RADFQKVLQLYPNNKAA 266

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           + + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E 
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347

Query: 490 GIVNFKFKDFNA 501
             V  K K    
Sbjct: 348 LKVKQKIKAQKD 359

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           + +   A+    +ALE +P++   L+ R       K+++ A+ DL    ++  E+K+   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345

Query: 522 YLGLALSSIGEYKKAEEAHLK 542
            L      I   K  E+A   
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYA 366

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +   + A+      L IDPSN + LY RA  +  + EY +A+ D   A ++ 
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILD--------SLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQL 98
           ++ ++K +R ++        +  A+   +   C  N   C  ++   +  +  C +AL++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           DP+  +A   +   +  L   ++AL              ADLK+  E+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQAL--------------ADLKKAQEIA 337

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFD---QILKEDPMYPEALIGRGTARAF------ 427
           +  + D R   G +   E K   A+  ++     + +D M+      +  A A       
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 428 --------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                    +  + AI      +       +A  RRG+A+A LG+   A  D  KA ++ 
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 480 PNSADILHERGIVNFKFKDFNA 501
           P+   I  E   +  + K    
Sbjct: 295 PDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 49  LRNWSKAIRIL---------DSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQ 97
           ++ +  AI  +               +  +++ C  N A C  +L+ +   I  C+  L 
Sbjct: 199 MQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258

Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
            +    +A   +G A + LG+ + A   + K  ++A    A  ++   L E   A  Q
Sbjct: 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L ++ +AI   +  L  +  N + L+ R      +G+   A  D+  A    
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 17/155 (10%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           AD     G   FK +    A++     +    ++              G+Y+    A   
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVKN 230

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              L  N       +      L   ++A+     VL  +++  KA   RG     LGQ  
Sbjct: 231 PCHL--N-------IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD 281

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            A  D        P +        +         +
Sbjct: 282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 26/193 (13%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDF 499
            SA   + +   A     +  +A     +  E         ++A    + G++    +  
Sbjct: 33  DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92

Query: 500 NAAVEDLSACVKL----DKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNF---- 550
             AV+ +     +       + +A        L    +  KA   + +A  +  N     
Sbjct: 93  PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLR 152

Query: 551 --LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHK 602
              E  G  ++        ++A   LQ+   + K         K    + L+      + 
Sbjct: 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 603 KAIKDLSSGLGID 615
            A K +     I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 17/148 (11%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
           S Y    +A  +  + ++A++A+L+  +   N         A+       +DL    +A+
Sbjct: 37  SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96

Query: 572 ECLQQVLYI---DKRFSKA--YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
           + +++   +   +     A     R   L       KA+        +           E
Sbjct: 97  QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAE 156

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDL 648
            +   +       ++ EA         +
Sbjct: 157 LIGKASRLLVRQQKFDEAAASLQKEKSM 184

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 32/233 (13%), Positives = 68/233 (29%), Gaps = 38/233 (16%)

Query: 467 EAIQDLSKALEFEPNS-----------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           EA + ++KA ++   S           A    +  +     K    A +      +    
Sbjct: 9   EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN 68

Query: 516 NKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQD 563
           N+S      A+   G+ L  +    +A +   KA  +            A     +  + 
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSG 611
           L +  KA+   QQ   + +        ++       LL    +  +A         +   
Sbjct: 129 L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE--LDSMEKFVLQCLA 662
           +   P+  +    +        +Y  A K    +  +     S +   L+ L 
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL 240

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            RE   A+    +A+  + +  +   RRG+A+  + E   A  D  K LE  P +     
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 488 ERGIVNFKFKDFNA 501
           +  +   K K+ N 
Sbjct: 390 QISMCQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDIC---------NRAFCYSQLELHKHVIRDCDKALQLD 99
           +  + K +  L+     S +              N A CY +L  +   +  CDKAL LD
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
               +    +G A   +   E A                D ++ LE+ 
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAK--------------GDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           L E  +A++   KAL  +  +   L+ RG       +F +A  D    ++++ +NK+A  
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 522 YLGLALSSIGEYKKAE 537
            + +      E+ + +
Sbjct: 390 QISMCQKKAKEHNERD 405

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHG--------LGQHKKAIKDLSSGLGIDPSNI 619
            K +  L+    + ++ SKA     L            L ++ KA++     LG+D +N 
Sbjct: 292 GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + LY R      + E+  A  D++  L++ 
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
            I+ E+G V FK   +  AV           +     ++L +      +  KA E+ L A
Sbjct: 269 AIVKEKGTVYFKGGKYMQAV----------IQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
             L+         L   Y  L    KA+EC  + L +D    K  + RG     + + + 
Sbjct: 319 AFLN---------LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
           A  D    L ++P N       + C     E+ E  + 
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 15/131 (11%), Positives = 42/131 (32%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L +    + +G++A A+++   +  E     +  + +       ++ E A          
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                                   ++ L + L   P++ ++  E  +   +      A+E
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129

Query: 505 DLSACVKLDKE 515
            L   +K++  
Sbjct: 130 LLWNILKVNLG 140

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 25/143 (17%), Positives = 48/143 (33%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S  E   ++       GE  +A+  +    +   +  D+   +     + K F  A 
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           E L+      ++N        L L          +   + +  + +  E    L   Y  
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 564 LANSEKALECLQQVLYIDKRFSK 586
           +   E+ALE L  +L ++     
Sbjct: 121 VGRDEEALELLWNILKVNLGAQD 143

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 23/122 (18%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------------ALIGRGTARAFQRE 430
             LS    Q+  G+Y  A +   + ++     P                G   A A  R 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 431 LEAAISDFTEAIQS-------NPSAGEAWK----RRGQARAALGESVEAIQDLSKALEFE 479
            + A+    +A+         N   G+ W      R  A   LG   EA+ +  K +E  
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 480 PN 481
             
Sbjct: 133 EE 134

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 510 VKLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565
           +K  KE   AY  L  A   +  GEY +A     +A+++       EA+ H        A
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 61

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IEC 621
              +AL  L       + F +A          L    KA+   +    ++       I  
Sbjct: 62  GLAEALAGL-------RSFDEA----------LHSADKALHYFNRRGELNQDEGKLWISA 104

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
           +Y RA     +G   EA+ ++     +E+    K          +   
Sbjct: 105 VYSRALALDGLGRGAEAMPEFKKV--VEMIEERKGETPGKERMMEVAI 150

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
                +  GKY  A  +F   L+        P AL   G +    R  + A + F + + 
Sbjct: 8   VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67

Query: 444 SNPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
             P+   A     + G ++   G++ EA Q L +     P S 
Sbjct: 68  RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
                         E   A ++ LKA    +           +    + ++   NS  A+
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 572 ECLQQVLYI---DKRFSKA----YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSN 618
           + L+  + I     +F +     + L  +L + L  + KAI       +  +       +
Sbjct: 98  DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
            +C    A      G+Y EA   Y   +   + +
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 55/326 (16%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           +Y  A+  F  I  ++     AL                       ++ NP+    W+ R
Sbjct: 52  EYKDAMDYFRAIAAKEEKSERAL-----------------ELTEIIVRMNPAHYTVWQYR 94

Query: 456 GQARAALGESVEAIQDLS-KALEFEPNSADILHERGIVNFKFKDFNAAVE--DLSACVKL 512
                +L +S+E    L  +       S  + H R ++  +    +   E   +   +  
Sbjct: 95  FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP 154

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHL--------KAIQLD-RNFLEAWGHLTQFYQD 563
           D +N   + YL    S      +  EA          + +++D RN   AWG        
Sbjct: 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN-SAWGWRWYLRVS 213

Query: 564 LANSEKALECLQQVL-YIDKRFSKA-------YHLRGLLLH-GLGQHKKAIKDLSSGLGI 614
              +E +   LQ  L YI K             +LRG L H  L         L      
Sbjct: 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674
              +IE +        +     +       AL+   DS  +              ++   
Sbjct: 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR-----VDDAAKVFEKL 328

Query: 675 KINSEFCWFDIDGDIDPLFKEYWCKR 700
                        + D +   YW  R
Sbjct: 329 SS-----------EYDQMRAGYWEFR 343

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 40/268 (14%), Positives = 82/268 (30%), Gaps = 25/268 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLS 507
           +          A   S  A+      +    +   I   R   + N   ++    ++   
Sbjct: 34  QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCE 93

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKA-----EEAHL--KAIQLD-RNFLEAWGHLTQ 559
                +++N   + Y  L +  I E          E  +    +  D +N    W +   
Sbjct: 94  EIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH-HVWSYRKW 152

Query: 560 FYQ--DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSG 611
                DL N  K L  + +V+  D + + A+  R  LL             + +  +   
Sbjct: 153 LVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK 212

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDY-DAALDLELDSME-KFVLQCLAFYQKEIA 669
           +   P N          +         ++++    +DLE D +   F L+ LA    +I 
Sbjct: 213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA----KIY 268

Query: 670 LYTASKINSEFCWFDIDGDIDPLFKEYW 697
                   S   +  +    +P+   +W
Sbjct: 269 TQQKKYNESRTVYDLLKSKYNPIRSNFW 296

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 17/172 (9%), Positives = 52/172 (30%), Gaps = 24/172 (13%)

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALEC 573
             Y+   +    +Y+       K +            L     +   Y +    +K ++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 574 LQQVLYIDKRFSKAYHLR-------GLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
            +Q+L   +                   L+   ++++++       ++S  +       +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237

Query: 621 CLYLRASCYHAIGEYREAIKDY-DAALDL----ELDSMEKFVLQCLAFYQKE 667
             Y R  C   +      I+D    A       E+ + ++ ++  ++  +  
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHH 289

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
            +  + E  Y  A+ +     +      E  +            E A       I     
Sbjct: 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDA-EAVLXTIPLQDQ 182

Query: 448 AGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    Q            IQ L + +   P  A +  +  +   +      A+E L
Sbjct: 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242

Query: 507 SACVKLDKE 515
              ++ D  
Sbjct: 243 FGHLRXDLT 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	781
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.98
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.87
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.79
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.71
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.7
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.69
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.68
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.67
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.65
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.62
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.59
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.53
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.5
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.48
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.42
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.4
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.35
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.27
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.22
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.19
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.94
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.86
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.79
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.75
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.72
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.71
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.43
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.37
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.36
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.27
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.14
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.09
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.03
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.98
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.76
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.87
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.78
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.47
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.22
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.98
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.86
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.78
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.56
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.5
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.78
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.45
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.25
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.1
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.03
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.96
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.54
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.23
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.14
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.01
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.83
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.52
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.67
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.59
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.51
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.88
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.68
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.46

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.6e-40  Score=357.12  Aligned_cols=378  Identities=19%  Similarity=0.184  Sum_probs=358.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  121 (781)
                      +..+++.|+|++|+..|.+++..+ .++..+..++.++++.|++++|+..+++++..+|.++.+|+.+|.++...|++++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            456789999999999999999999 5567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccc
Q 003991          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (781)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (781)
                      |+..|++++.+.                                                                    
T Consensus        86 A~~~~~~al~~~--------------------------------------------------------------------   97 (388)
T 1w3b_A           86 AIEHYRHALRLK--------------------------------------------------------------------   97 (388)
T ss_dssp             HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred             HHHHHHHHHHcC--------------------------------------------------------------------
Confidence            999999993211                                                                    


Q ss_pred             cCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcc
Q 003991          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (781)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (781)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (388)
T 1w3b_A           98 --------------------------------------------------------------------------------   97 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHH
Q 003991          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (781)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (781)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (388)
T 1w3b_A           98 --------------------------------------------------------------------------------   97 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (781)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (781)
                                      |..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus        98 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           98 ----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                            2224567778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (781)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  521 (781)
                      +..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++.
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                      ++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997766665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.3e-39  Score=346.85  Aligned_cols=313  Identities=22%  Similarity=0.261  Sum_probs=303.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      ++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            36678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ...|++++|+..|++++...|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  225 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (781)
                      |++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++..|.++
T Consensus       226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                      .++..+|.++...|++++|+..|++++++.|++..       +++.+|..+...|++++|+..|+++..++|++...|..
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~  378 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence            99999999999999999999999999999999987       55666777788999999999999999999999988754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=347.12  Aligned_cols=459  Identities=17%  Similarity=0.177  Sum_probs=372.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      .+......+..++..|+|++|+..|++++..+|++..+.++|.+++++|++++|+..++++++++|++..+++.+|.++.
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            45566688889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (781)
                      .+|++++|+..|++++.+.|.........+...................+                              
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------  134 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------------  134 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence            99999999999999999998776554433332222111100010000000                              


Q ss_pred             CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (781)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (781)
                                        .....+...... ..    ..........                          .....  
T Consensus       135 ------------------~~~~~~~~~~~~-~~----~~~~~~~~~~--------------------------~~~~~--  163 (514)
T 2gw1_A          135 ------------------TATATPTELSTQ-PA----KERKDKQENL--------------------------PSVTS--  163 (514)
T ss_dssp             ---------------------------------------------CC--------------------------CCHHH--
T ss_pred             ------------------HHHHhhhhccCC-hh----hHHHhhccCC--------------------------chhHH--
Confidence                              000000000000 00    0000000000                          00000  


Q ss_pred             ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (781)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (781)
                                                                        ...+..........                
T Consensus       164 --------------------------------------------------~~~~~~~~~~~~~~----------------  177 (514)
T 2gw1_A          164 --------------------------------------------------MASFFGIFKPELTF----------------  177 (514)
T ss_dssp             --------------------------------------------------HHHHHTTSCCCCCC----------------
T ss_pred             --------------------------------------------------HHHHHhhcCHHHHH----------------
Confidence                                                              00000000000000                


Q ss_pred             hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHH
Q 003991          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEA  417 (781)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~~  417 (781)
                                        ..-..|.++..++..|..++.   .|++++|+..|+++++     .  +       |.++.+
T Consensus       178 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (514)
T 2gw1_A          178 ------------------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS  239 (514)
T ss_dssp             ------------------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred             ------------------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence                              000125567888999998887   8999999999999999     5  4       445678


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (781)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (781)
                      ++.+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus       240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (781)
                      ++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus       319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          578 LYIDKRFSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       578 l~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      +...|.++.      ++..+|.++..   .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++++
T Consensus       399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            999888755      99999999999   999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHH
Q 003991          649 ELDSMEKFVLQ  659 (781)
Q Consensus       649 ~p~~~~~~~~~  659 (781)
                      +|+++..+..+
T Consensus       479 ~~~~~~~~~~~  489 (514)
T 2gw1_A          479 ARTMEEKLQAI  489 (514)
T ss_dssp             CSSHHHHHHHH
T ss_pred             ccccHHHHHHH
Confidence            99998876554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-35  Score=337.60  Aligned_cols=286  Identities=15%  Similarity=0.126  Sum_probs=276.3

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      |.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+..++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      +|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      ..|+++++..|.++.++..+|.++...|++++|+..|++++..      +|+. ..++..+|.++...|++++|+..|++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988      5554 78999999999999999999999999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      +++.+|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.+|
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999777766543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-36  Score=345.19  Aligned_cols=462  Identities=12%  Similarity=0.022  Sum_probs=384.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      .....+..+..+++.|++++|+..|.+++...|++..++.+|.++.+.|++++|+..+++++.. |.++.+++.+|.+|.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV  161 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence            4455567777889999999999999999988888888899999999999999999999999875 667889999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCC
Q 003991          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (781)
                      ..|++++|+..|++.   .|.....                 .  .+ ..                              
T Consensus       162 ~~g~~~~A~~~~~~~---~~~~~~~-----------------~--~~-~~------------------------------  188 (597)
T 2xpi_A          162 KLYDWQGALNLLGET---NPFRKDE-----------------K--NA-NK------------------------------  188 (597)
T ss_dssp             HTTCHHHHHHHHCSS---CTTC----------------------------------------------------------
T ss_pred             HHhhHHHHHHHHhcc---CCccccc-----------------c--cc-cc------------------------------
Confidence            999999999877753   1111000                 0  00 00                              


Q ss_pred             CcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccccc
Q 003991          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (781)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (781)
                                                             ......+.                                 
T Consensus       189 ---------------------------------------~~~~~~~~---------------------------------  196 (597)
T 2xpi_A          189 ---------------------------------------LLMQDGGI---------------------------------  196 (597)
T ss_dssp             -----------------------------------------CCCSSC---------------------------------
T ss_pred             ---------------------------------------cccccccc---------------------------------
Confidence                                                   00000000                                 


Q ss_pred             ccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHh
Q 003991          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (781)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (781)
                                                                      .             ........+...+...+.
T Consensus       197 ------------------------------------------------~-------------~~~~~~~~l~~~~~~~g~  215 (597)
T 2xpi_A          197 ------------------------------------------------K-------------LEASMCYLRGQVYTNLSN  215 (597)
T ss_dssp             ------------------------------------------------C-------------HHHHHHHHHHHHHHHTTC
T ss_pred             ------------------------------------------------c-------------hhHHHHHHHHHHHHHcCC
Confidence                                                            0             000001111112222222


Q ss_pred             hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHH--------------------------------------HHHHHHcCC
Q 003991          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSR--------------------------------------GIAQVNEGK  396 (781)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------a~~~~~~g~  396 (781)
                      ..+..        ..+..+....|.++..+..+                                      +..+...|+
T Consensus       216 ~~~A~--------~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  287 (597)
T 2xpi_A          216 FDRAK--------ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE  287 (597)
T ss_dssp             HHHHH--------HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred             HHHHH--------HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence            11111        13333444455555554444                                      444557899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (781)
Q Consensus       397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  476 (781)
                      +++|+..|+++++. |.+..++..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++
T Consensus       288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999887 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Q 003991          477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (781)
Q Consensus       477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  556 (781)
                      ...|.+..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  446 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF  446 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCC-HHHHHHHHHHH
Q 003991          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN-IECLYLRASCY  629 (781)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~  629 (781)
                      +|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++.      +|++ ..++..+|.+|
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~  526 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY  526 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988      5654 78999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                      ...|++++|+..|+++++++|+++.       +++.++..+...|++++|...|+++.+++|+....|..
T Consensus       527 ~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          527 RKLKMYDAAIDALNQGLLLSTNDAN-------VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSSCCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            9999999999999999999999987       55666777788999999999999999999999887643

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.8e-35  Score=332.43  Aligned_cols=445  Identities=17%  Similarity=0.139  Sum_probs=341.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      ..+......+..++..|+|++|+.+|++++.++ .++..++++|.+++++|++++|+..|+++++++|+++.+++.+|.+
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  102 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            456666788889999999999999999999999 6788899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCC
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH  192 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (781)
                      +..+|++++|+..|+ ++.+.|+.................+...+     ...                           
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~---------------------------  149 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN---------------------------  149 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH---------------------------
T ss_pred             HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH---------------------------
Confidence            999999999999996 87777766544221111111111110111     000                           


Q ss_pred             CCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCcccc
Q 003991          193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE  272 (781)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (781)
                                        +..   .|......   .+....+..+...+                               
T Consensus       150 ------------------l~~---~~~~~~~~---~~~~~~~~~~~~~~-------------------------------  174 (537)
T 3fp2_A          150 ------------------LSK---DEGRGSQV---LPSNTSLASFFGIF-------------------------------  174 (537)
T ss_dssp             ------------------CC----------CC---CCCHHHHHHHHHTS-------------------------------
T ss_pred             ------------------HHh---Cccccccc---cchHhHHHHHHHhc-------------------------------
Confidence                              000   00000000   00000000000000                               


Q ss_pred             ccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhh
Q 003991          273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW  352 (781)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (781)
                                                                        .. .......                    
T Consensus       175 --------------------------------------------------~~-~~~~~~~--------------------  183 (537)
T 3fp2_A          175 --------------------------------------------------DS-HLEVSSV--------------------  183 (537)
T ss_dssp             --------------------------------------------------CH-HHHHHTS--------------------
T ss_pred             --------------------------------------------------Ch-HHHHHHH--------------------
Confidence                                                              00 0000000                    


Q ss_pred             HhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 003991          353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS--------RGIAQVNEGKYASAISIFDQILKEDPMYPE-------A  417 (781)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~  417 (781)
                                        .......+........        .+......|++++|+..|+++++.+|+++.       +
T Consensus       184 ------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  245 (537)
T 3fp2_A          184 ------------------NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA  245 (537)
T ss_dssp             ------------------CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_pred             ------------------hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHH
Confidence                              0000000000111111        133344467899999999999999999865       5


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (781)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (781)
                      +..+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ  324 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence            778889999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (781)
                      ++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++
T Consensus       325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHH------HHHHHHHHHHHC----------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991          578 LYIDKRFSK------AYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD  641 (781)
Q Consensus       578 l~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  641 (781)
                      +...|.+..      .+..+|.++...          |++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  484 (537)
T 3fp2_A          405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL  484 (537)
T ss_dssp             HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            998775433      366778899998          9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcHHHH
Q 003991          642 YDAALDLELDSMEKF  656 (781)
Q Consensus       642 ~~~al~~~p~~~~~~  656 (781)
                      |+++++++|++.+..
T Consensus       485 ~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          485 FEDSAILARTMDEKL  499 (537)
T ss_dssp             HHHHHHHC--CHHHH
T ss_pred             HHHHHHhCCCcHHHH
Confidence            999999999998753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-34  Score=319.05  Aligned_cols=277  Identities=16%  Similarity=0.144  Sum_probs=261.3

Q ss_pred             HHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (781)
Q Consensus       415 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (781)
                      ..+++.+|.++..   .|++++|+..|++++.     .  .       |.+..++..+|.++...|++++|+..+++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            7778888888887   8999999999999999     5  3       44567899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Q 003991          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (781)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  557 (781)
                      ..|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus       266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  344 (514)
T 2gw1_A          266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL  344 (514)
T ss_dssp             HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred             hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH------HHHHHHHHHHH
Q 003991          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASCYHA  631 (781)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~  631 (781)
                      |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|+++.      ++..+|.++..
T Consensus       345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999888755      99999999999


Q ss_pred             ---hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          632 ---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       632 ---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                         .|++++|+..|+++++++|+++.       +++..|..+...|++++|+..|.++.+++|+..+.|..
T Consensus       425 ~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          425 NPTVENFIEATNLLEKASKLDPRSEQ-------AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhCcccHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence               99999999999999999999987       55667777788999999999999999999999988743

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.8e-32  Score=299.01  Aligned_cols=273  Identities=19%  Similarity=0.247  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHHhC
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAISDFTEAIQSN  445 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~  445 (781)
                      +.+++.+|.++...|++++|+..|+++++.+|.+.   .++..+            |.++...|++++|+..|++++...
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566678888888888888888888888888877   665544            666889999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--
Q 003991          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL--  523 (781)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l--  523 (781)
                      |.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++...+..+  
T Consensus       174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~  253 (450)
T 2y4t_A          174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ  253 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988877666  


Q ss_pred             ----------HHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991          524 ----------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       524 ----------a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (781)
                                |.++...|++++|+..|++++...|.++    ..+..+|.++...|++++|+..+++++...|+++.++.
T Consensus       254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  333 (450)
T 2y4t_A          254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence                      9999999999999999999999999874    47889999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhhccC
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC------------YHAIG-----EYREAIKDYDA-ALDLELD  651 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~  651 (781)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+            |..+|     +.+++.+.|++ +++..|+
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999955            44445     56778889986 8888888


Q ss_pred             cH
Q 003991          652 SM  653 (781)
Q Consensus       652 ~~  653 (781)
                      +.
T Consensus       414 ~~  415 (450)
T 2y4t_A          414 NF  415 (450)
T ss_dssp             GC
T ss_pred             CC
Confidence            63

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=3e-33  Score=314.19  Aligned_cols=262  Identities=15%  Similarity=0.105  Sum_probs=241.7

Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 003991          427 FQRELEAAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (781)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (781)
                      ..|++++|+..|+++++.+|++..       ++..+|.++...|++++|+..|++++...|. ..++..+|.++...|++
T Consensus       214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence            346899999999999999999865       5778889999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (781)
Q Consensus       500 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (781)
                      ++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++.
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH------HHHHHHHHHHHHh----------CCHHHHHHHHH
Q 003991          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYD  643 (781)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~  643 (781)
                      ..|+++.++..+|.++...|++++|+..|+++++..|++.      ..++.+|.++...          |++++|+.+|+
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence            9999999999999999999999999999999999877644      3467788999999          99999999999


Q ss_pred             HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHH
Q 003991          644 AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (781)
Q Consensus       644 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  696 (781)
                      ++++.+|+++.       +++..|..+...|++++|+.+|+++..+.|...+.
T Consensus       453 ~a~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          453 KACELDPRSEQ-------AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred             HHHHhCCCCHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            99999999987       56677777888999999999999999999988776

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=7.5e-32  Score=285.60  Aligned_cols=312  Identities=20%  Similarity=0.205  Sum_probs=295.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      +++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEP---NSADILHER------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      ...|++++|+..|+++++..|   .++.++..+            |.++...|++++|+..+++++...|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   888888777            78999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHH
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH------------LRG  592 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~la  592 (781)
                      .++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++.            .+|
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988654            448


Q ss_pred             HHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI  668 (781)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  668 (781)
                      .++...|++++|+..+++++...|+++.    ++..+|.++...|++++|+..|+++++.+|+++.       +++..|.
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~  314 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-------ALKDRAE  314 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-------HHHHHHH
Confidence            8899999999999999999999999874    4667999999999999999999999999999987       6666777


Q ss_pred             HHHHHhchhhHHHHHhhhcCCCcccHHHHH
Q 003991          669 ALYTASKINSEFCWFDIDGDIDPLFKEYWC  698 (781)
Q Consensus       669 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  698 (781)
                      .+...|++++|+.+|.++.+++|+....|.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  344 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNENDQQIRE  344 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Confidence            778899999999999999999999988763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1e-31  Score=294.57  Aligned_cols=324  Identities=20%  Similarity=0.196  Sum_probs=299.3

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      .+..+....|.++..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   93 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF   93 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhC
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHER------------GIVNFKFKDFNAAVEDLSACVKLD  513 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~  513 (781)
                      ..++..+|.++...|++++|+..|++++...|.+.   .++..+            |.++...|++++|+..|++++...
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999888   776655            666999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--
Q 003991          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR--  591 (781)
Q Consensus       514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--  591 (781)
                      |.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|++...+..+  
T Consensus       174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~  253 (450)
T 2y4t_A          174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ  253 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999887766  


Q ss_pred             ----------HHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          592 ----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       592 ----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                                |.++...|++++|+..|++++...|+++.    .+..+|.++...|++++|+..++++++++|+++.   
T Consensus       254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---  330 (450)
T 2y4t_A          254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN---  330 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---
Confidence                      99999999999999999999999999854    7899999999999999999999999999999987   


Q ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                          +++.+|.++...|++++|+..|+++..++|+....|..
T Consensus       331 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  368 (450)
T 2y4t_A          331 ----ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG  368 (450)
T ss_dssp             ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             ----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence                56667777778999999999999999999999888644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.6e-30  Score=273.71  Aligned_cols=291  Identities=20%  Similarity=0.171  Sum_probs=271.7

Q ss_pred             ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CcHHH
Q 003991          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP---SAGEA  451 (781)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~  451 (781)
                      ...|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|   ++..+
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  110 (359)
T 3ieg_A           31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA  110 (359)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH
Confidence            344555778889999999999999999999999999999999999999999999999999999999999999   88888


Q ss_pred             HHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          452 WKRR------------GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (781)
Q Consensus       452 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  519 (781)
                      +..+            |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.+
T Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  190 (359)
T 3ieg_A          111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA  190 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            8777            7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG------------HLTQFYQDLANSEKALECLQQVLYIDKRFSK-  586 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-  586 (781)
                      +..+|.++...|++++|+..++++++..|++..++.            .+|.++...|++++|+..+++++...|+++. 
T Consensus       191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  270 (359)
T 3ieg_A          191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY  270 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence            999999999999999999999999999999877654            4488899999999999999999999999874 


Q ss_pred             ---HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          587 ---AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       587 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                         ++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus       271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence               46679999999999999999999999999999999999999999999999999999999999999998776665554


Q ss_pred             HH
Q 003991          664 YQ  665 (781)
Q Consensus       664 ~~  665 (781)
                      ..
T Consensus       351 ~~  352 (359)
T 3ieg_A          351 RL  352 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-30  Score=283.48  Aligned_cols=299  Identities=17%  Similarity=0.074  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          382 DFRLSRGIAQVN--EGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       382 ~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      ..+..+|..+..  .++|++|+.+|+++++.+|+++.++..+|.++..   .+++++|+..++++++++|++..++..+|
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            344445555544  4679999999999999999999999999988654   56778999999999999999999999888


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 003991          457 QARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--  530 (781)
Q Consensus       457 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--  530 (781)
                      ..+...    +++++|+.++++++..+|..+.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...  
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~  296 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF  296 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            776654    67889999999999999999999999999999999999999999999999999999999999988643  


Q ss_pred             -----------------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 003991          531 -----------------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK---AYHL  590 (781)
Q Consensus       531 -----------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~  590 (781)
                                       +.+++|+..+++++..+|....++..+|.++...|++++|+.+|++++...|++..   ++..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~  376 (472)
T 4g1t_A          297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR  376 (472)
T ss_dssp             HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence                             34678999999999999999999999999999999999999999999998887543   3566


Q ss_pred             HHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 003991          591 RGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA  669 (781)
Q Consensus       591 la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  669 (781)
                      +|.+ +...|++++|+..|++++++.|++.....          ....+...++++++.+|+++.       +++.+|.+
T Consensus       377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~-------~~~~LG~~  439 (472)
T 4g1t_A          377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSE-------ALHVLAFL  439 (472)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTT-------HHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHH-------HHHHHHHH
Confidence            6654 45789999999999999999999765332          234556778899999999988       55556666


Q ss_pred             HHHHhchhhHHHHHhhhcCCCcccHHHH
Q 003991          670 LYTASKINSEFCWFDIDGDIDPLFKEYW  697 (781)
Q Consensus       670 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~  697 (781)
                      +...|++++|+.+|++++++.|.++..+
T Consensus       440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~  467 (472)
T 4g1t_A          440 QELNEKMQQADEDSERGLESGSLIPSAS  467 (472)
T ss_dssp             HHHHHHCC--------------------
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence            7778999999999999999988777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.4e-31  Score=274.57  Aligned_cols=292  Identities=14%  Similarity=0.091  Sum_probs=275.3

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (781)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (781)
                      ..+...+.+++.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   92 (330)
T 3hym_B           13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS   92 (330)
T ss_dssp             -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence            34455677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991          452 WKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (781)
Q Consensus       452 ~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  530 (781)
                      +..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus        93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHCCCH
Q 003991          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       531 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~  601 (781)
                      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|++
T Consensus       173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999999999999999999999999999999886         66788999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      ++|+.+|+++++..|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..++.++
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998666655543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.98  E-value=6.5e-30  Score=282.08  Aligned_cols=386  Identities=13%  Similarity=0.027  Sum_probs=245.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc---------c-chhhhhhHHHHHHhhhCHHHHHHHHHHHHhcC--------CCch
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLL  103 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~---------~-~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~--------p~~~  103 (781)
                      .+.-++..|+|++|+++|++|+++.         + ....+.|+|.+|..+|++++|+..+++++++.        +..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            3445678999999999999999873         1 12348899999999999999999999999874        4567


Q ss_pred             hHHHHHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCC
Q 003991          104 QAYILKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNA  181 (781)
Q Consensus       104 ~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (781)
                      ..+..+|.++...|  ++++|+..|++|+++.|+.+.....+..+.-...    ..      .                 
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~----~~------~-----------------  189 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD----NW------P-----------------  189 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HS------C-----------------
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----Cc------h-----------------
Confidence            78999998887654  7999999999998777776544322211100000    00      0                 


Q ss_pred             CCCCcccccCCCCCcccccccCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCC
Q 003991          182 NDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGS  261 (781)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (781)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (472)
T 4g1t_A          190 --------------------------------------------------------------------------------  189 (472)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCccccccccCCCcccCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCc
Q 003991          262 KSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDS  341 (781)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (781)
                                                                                                 .... 
T Consensus       190 ---------------------------------------------------------------------------~~~~-  193 (472)
T 4g1t_A          190 ---------------------------------------------------------------------------PSQN-  193 (472)
T ss_dssp             ---------------------------------------------------------------------------CCCC-
T ss_pred             ---------------------------------------------------------------------------HHHH-
Confidence                                                                                       0000 


Q ss_pred             hhhhhhhhhhhHhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEA  417 (781)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~  417 (781)
                               .       ..        .+.+.+...|.++..+..+|..+..    .|++++|+.++++++..+|.++.+
T Consensus       194 ---------a-------l~--------~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~  249 (472)
T 4g1t_A          194 ---------A-------ID--------PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV  249 (472)
T ss_dssp             ---------T-------HH--------HHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred             ---------H-------HH--------HHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence                     0       00        1222233455555555555544433    344555666666666666666666


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (781)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (781)
                      +..+|.++...|++++|+..+.++++..|++..++..+|.+|...+....+..               ....+......+
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~  314 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLE  314 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666655543221111100               001111112234


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH---HHHHHHHH-HHHcCCHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQF-YQDLANSEKALEC  573 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~  573 (781)
                      .+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|++..   ++..+|.+ +...|++++|+..
T Consensus       315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~  394 (472)
T 4g1t_A          315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH  394 (472)
T ss_dssp             HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5788999999999999999999999999999999999999999999998876643   45666654 4568999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      |++++.+.|.+......          ...+...+++++..+|+++.++..+|.+|..+|++++|+++|++|+++.|.+|
T Consensus       395 y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          395 FIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             HHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            99999999987654332          34456778889999999999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q 003991          654 EKFVLQ  659 (781)
Q Consensus       654 ~~~~~~  659 (781)
                      .+...+
T Consensus       465 ~a~~~~  470 (472)
T 4g1t_A          465 SASSWN  470 (472)
T ss_dssp             ------
T ss_pred             cHhhcC
Confidence            865443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=6.4e-29  Score=259.79  Aligned_cols=289  Identities=14%  Similarity=0.047  Sum_probs=268.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991          404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (781)
Q Consensus       404 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  483 (781)
                      ....+...|.++..+..+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   90 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP   90 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence            34556667788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          484 DILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       484 ~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      .++..+|.++...| ++++|+.++++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHhC
Q 003991          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---------PSNIECLYLRASCYHAIG  633 (781)
Q Consensus       563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g  633 (781)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...         |..+.++..+|.++...|
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999875         666789999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          634 EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       634 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                      ++++|+.+|+++++++|+++.       +++..|..+...|++++|+.+|.++..++|+....|..
T Consensus       251 ~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQNAS-------TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM  309 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSH-------HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCccchH-------HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence            999999999999999999988       55666777778899999999999999999999887644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=2.9e-29  Score=266.97  Aligned_cols=298  Identities=20%  Similarity=0.215  Sum_probs=260.3

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003991          390 AQVNEGKYASAIS-IFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (781)
Q Consensus       390 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (781)
                      ++...|+|++|+. .|++++...|.++    ..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            4566789999999 9999998888764    5689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 003991          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----------------YLGLALS  528 (781)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~----------------~la~~~~  528 (781)
                      +++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999998876654                466666 


Q ss_pred             HcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      ..|++++|+..+++++...|.  .+.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999  899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH----HHHHHHHHHHHHHHHHhchhhHHHH
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV----LQCLAFYQKEIALYTASKINSEFCW  682 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~  682 (781)
                      .|++++..+|+++.++..+|.++..+|++++|+.+|++++++.|++.....    ....++...+.++...|++++|..+
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            999999999999999999999999999999999999999999998821100    0022566777778888999999988


Q ss_pred             HhhhcC
Q 003991          683 FDIDGD  688 (781)
Q Consensus       683 ~~~~~~  688 (781)
                      +.++.+
T Consensus       353 ~~~~l~  358 (368)
T 1fch_A          353 DARDLS  358 (368)
T ss_dssp             HTTCHH
T ss_pred             HHHHHH
Confidence            876544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=1.4e-28  Score=261.40  Aligned_cols=269  Identities=16%  Similarity=0.178  Sum_probs=241.8

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      .++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44566999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHER----------GIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA  526 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~  526 (781)
                      +...|++++|+..|+++++..|.+...+..+          |.++...|++++|+.++++++...|.  ++.++..+|.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            9999999999999999999998766555544          89999999999999999999999999  89999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      +...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          607 DLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       607 ~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      +|++++++.|+            +..+|..++.++..+|+.+.|.....+.+.
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            99999998876            357889999999999999988877766433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.96  E-value=3.3e-28  Score=258.86  Aligned_cols=268  Identities=19%  Similarity=0.223  Sum_probs=256.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY  522 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~  522 (781)
                      ..|++++|+..+++++...|.+...+.                .++.++ ..|++++|+..+++++...|.  ++.++..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            999999999999999999998876654                466666 999999999999999999999  8999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (781)
                      +|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+++
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +|+.+|++++...|++           +.+|..+|.++..+|++++|..+++++++..
T Consensus       303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  360 (368)
T 1fch_A          303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL  360 (368)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence            9999999999999887           8999999999999999999999998877653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=1.6e-28  Score=260.98  Aligned_cols=285  Identities=19%  Similarity=0.187  Sum_probs=246.8

Q ss_pred             HHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991          402 SIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (781)
Q Consensus       402 ~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (781)
                      ..+.+.+...+.++    ..++.+|.++...|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            33444444444444    45999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------LGLALSSIGEYKKAEEAHLKAIQLD  547 (781)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~  547 (781)
                      .+|.+..++..+|.++...|++++|+..+++++...|.+...+..          +|.++...|++++|+..+++++...
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999887665554          4999999999999999999999999


Q ss_pred             cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991          548 RN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (781)
Q Consensus       548 ~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (781)
                      |.  ++.++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            99  8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhccCcHHH-----HHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991          626 ASCYHAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (781)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  686 (781)
                      |.+|..+|++++|+.+|++++++.|++...     ......++...+.++..+|+.+.+.....+.
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            999999999999999999999999985432     1122446777788888888888888776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=2.9e-28  Score=254.41  Aligned_cols=273  Identities=13%  Similarity=0.126  Sum_probs=257.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      ++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      ...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++...|.++.++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999999988777776              66 688999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (781)
                      .++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      +..|++++...|+            ++.++..+|.++..+|++++|...++++++..|+.
T Consensus       260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            9999999999999            78999999999999999999999999988877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=3.8e-28  Score=255.87  Aligned_cols=260  Identities=12%  Similarity=0.096  Sum_probs=181.2

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q 003991          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW  452 (781)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  452 (781)
                      +...|..+.++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            566777777777777777777777777777777777777777777777777777775 7777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG  531 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g  531 (781)
                      +.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|.++|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            77777777777777777777777777777777777777777777777777777777777777666666666666666 33


Q ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Q 003991          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLS  609 (781)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~  609 (781)
                      .+++|+                             .+.++.+|++++.++|++..+|+.+|.++...|  ++++|++.+.
T Consensus       250 ~~~eA~-----------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~  300 (382)
T 2h6f_A          250 YNDRAV-----------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL  300 (382)
T ss_dssp             SCSHHH-----------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred             cchHHH-----------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence            334442                             122346666666666666666666666666666  4667777666


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HhhccCcHHHHHHHHHHH
Q 003991          610 SGLGIDPSNIECLYLRASCYHAIG--------E-YREAIKDYDAA-LDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~  663 (781)
                      ++ +.+|+++.++..+|.+|..+|        + +++|+.+|+++ ++++|.....|..++..+
T Consensus       301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            66 667777777777777777663        2 46777777777 777777776555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=1.1e-27  Score=252.29  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=198.1

Q ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 003991          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (781)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (781)
                      ....+..++...|.+..+|+.+|.++...|+ +++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++.+
T Consensus       116 Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          116 AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445677888999999999999999999997 999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCCHH
Q 003991          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAA-----VEDLSACVKLDKENKS  518 (781)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~a~~~~p~~~~  518 (781)
                      +|++..+|+.+|.++..+|++++|+.+|+++++++|.+..+|+.+|.++.. .|.+++|     +.+|++++.++|++..
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence            999999999999999999999999999999999999999999999999999 5554777     4778888888888888


Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCCHH
Q 003991          519 AYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--------N-SEKALECLQQV-LYIDKRFSK  586 (781)
Q Consensus       519 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~  586 (781)
                      +|.+++.++...|  ++++|++.+.++ +.+|+++.++..+|.+|...|        + +++|+.+|+++ ++++|....
T Consensus       276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~  354 (382)
T 2h6f_A          276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE  354 (382)
T ss_dssp             HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence            8888888887777  577777777776 777777777777777777663        2 46677777776 667776666


Q ss_pred             HHHHHHHHHHH
Q 003991          587 AYHLRGLLLHG  597 (781)
Q Consensus       587 ~~~~la~~~~~  597 (781)
                      .|..++..+..
T Consensus       355 ~w~~~~~~l~~  365 (382)
T 2h6f_A          355 YWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=2e-24  Score=238.98  Aligned_cols=269  Identities=13%  Similarity=-0.002  Sum_probs=241.1

Q ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHH
Q 003991          380 SVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEA  451 (781)
Q Consensus       380 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  451 (781)
                      ++.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+
T Consensus       146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  221 (490)
T 2xm6_A          146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELG  221 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence            35677788888887    88999999999999886  579999999999998    89999999999999885  56889


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991          452 WKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYL  523 (781)
Q Consensus       452 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l  523 (781)
                      ++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+
T Consensus       222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~L  297 (490)
T 2xm6_A          222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYL  297 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            9999999997    89999999999999876  468899999999998    89999999999999865  678899999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991          524 GLALSSI-----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (781)
Q Consensus       524 a~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (781)
                      |.++...     +++++|+.+|+++++.  .++.+++.+|.+|...|   ++++|+.+|+++++.  .++.+++.+|.+|
T Consensus       298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  373 (490)
T 2xm6_A          298 AHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNAL  373 (490)
T ss_dssp             HHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            9999998     9999999999999986  46789999999999866   899999999999987  6799999999999


Q ss_pred             HH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhcc---CcHHHHHHHHHH
Q 003991          596 HG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL---DSMEKFVLQCLA  662 (781)
Q Consensus       596 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~  662 (781)
                      ..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..|   +++.+...++..
T Consensus       374 ~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          374 LQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL  449 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             HcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence            99    89999999999999986  468999999999999    8999999999999999994   466655555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=1.6e-26  Score=241.20  Aligned_cols=275  Identities=16%  Similarity=0.175  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      ...++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYL--------------GL-ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                      ..|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++...|.++.++..+|.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            99999999999999999999988777666              66 6888999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 003991          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  639 (781)
                      ++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCcHHHHHH-----HHHHHHHHHHHHHHHhchhhHHHHHhhhcCC
Q 003991          640 KDYDAALDLELDSMEKFVL-----QCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (781)
Q Consensus       640 ~~~~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  689 (781)
                      .+|++++++.|+.......     ...++...+.++...|++++|...++++...
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            9999999999992110000     1236667777888889999999998776654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=8.6e-24  Score=233.79  Aligned_cols=288  Identities=16%  Similarity=0.062  Sum_probs=257.5

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991          381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (781)
Q Consensus       381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  452 (781)
                      +.+++.+|..+..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3456667888887    88999999999999875  579999999999998    88999999999999986  578999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      +.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  262 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            999999999    89999999999999986  468899999999997    89999999999999875  5688999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991          525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (781)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (781)
                      .++..    .+++++|+.+|+++.+.  .++.+++.+|.+|...     +++++|+.+|+++.+.  .++.+++.+|.++
T Consensus       263 ~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y  338 (490)
T 2xm6_A          263 YILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIY  338 (490)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence            99999    99999999999999876  5788999999999998     9999999999999876  5688999999999


Q ss_pred             HHCC---CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 003991          596 HGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI  668 (781)
Q Consensus       596 ~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  668 (781)
                      ...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..  ++.       +++.+|.
T Consensus       339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-------a~~~Lg~  407 (490)
T 2xm6_A          339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA-------AQVQLGE  407 (490)
T ss_dssp             HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHH
T ss_pred             HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH-------HHHHHHH
Confidence            9877   899999999999987  679999999999999    899999999999999864  455       5556666


Q ss_pred             HHHH----HhchhhHHHHHhhhcCCCc
Q 003991          669 ALYT----ASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       669 ~~~~----~~~~~~A~~~~~~~~~~~p  691 (781)
                      .+..    .+++++|+.+|+++.+..|
T Consensus       408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          408 IYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            6666    7899999999999999883

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.9e-25  Score=221.99  Aligned_cols=236  Identities=18%  Similarity=0.170  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILH  487 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  487 (781)
                      +..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|..       +.++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3445555555555555555555555555555 555555555555555555555555555555555443       45666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  567 (781)
                      .+|.++...|++++|+.++++++...|.        +.++...|++++|+..+++++..+|..+.++..+|.++...|++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            6666666666666666666666666655        34566777888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      ++|+..|++++...|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++
T Consensus       156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88888888888888888888888999999999999999999999988898888999999999999999999999999999


Q ss_pred             hc------cCcHHHHHHH
Q 003991          648 LE------LDSMEKFVLQ  659 (781)
Q Consensus       648 ~~------p~~~~~~~~~  659 (781)
                      ++      |++...+..+
T Consensus       236 ~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          236 KDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HHHHHHTTTTHHHHHHHH
T ss_pred             hChhhcCCCchHHHHHHH
Confidence            88      7776654433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=1.1e-25  Score=228.39  Aligned_cols=248  Identities=16%  Similarity=0.150  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG  456 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la  456 (781)
                      ++.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            455666677777777777777777777777777666777777777777777777777777766 3322    33466666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                      .++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|......+++++|
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666333334466666


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHCCCHHHHH
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKAI  605 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A~  605 (781)
                      +..|+++++..|++..++..+|.++...|+   +++|+..|++++...   |+     ...++..+|.++...|++++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666666666666666665555   555666665555543   22     1234445555555555555555


Q ss_pred             HHHHHhhccCCCCHHHHHHHHHHH
Q 003991          606 KDLSSGLGIDPSNIECLYLRASCY  629 (781)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~~  629 (781)
                      .+|+++++++|+++.++-.++.+.
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC---
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhh
Confidence            555555555555555554444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.2e-25  Score=221.74  Aligned_cols=241  Identities=17%  Similarity=0.161  Sum_probs=229.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW  452 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  452 (781)
                      .++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++.+++...|.+       ..++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            47889999999999999999999999999999 899999999999999999999999999999998876       7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  532 (781)
                      ..+|.++...|++++|+.+|++++...|.        +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986        4567778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      +++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+.+|++++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC------CCCHHHHHHHHHHH
Q 003991          613 GID------PSNIECLYLRASCY  629 (781)
Q Consensus       613 ~~~------p~~~~~~~~la~~~  629 (781)
                      +..      |++..++..++.++
T Consensus       235 ~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          235 TKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HhChhhcCCCchHHHHHHHHHhh
Confidence            999      88888888777653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=7.4e-25  Score=223.44  Aligned_cols=277  Identities=12%  Similarity=0.010  Sum_probs=242.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      ....+..|+|..|+..++++...+|++ .+....++.+|...|+++.|+..++.   .+|....++..++..+...++++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            456788999999999999887777776 35778899999999999999998866   25666778889999999999999


Q ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          467 EAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (781)
Q Consensus       467 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (781)
                      +|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..++..+|.++..+|++++|+..+++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999876  699999999999999999999999999998     8999999999999999999999999999999


Q ss_pred             hhCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          545 QLDRNFLEAWGHLT--QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       545 ~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      +.+|++.......+  .++...|++++|+..|++++...|+++.+++.+|.++..+|++++|+..|++++..+|+++.++
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99998865444333  3344458999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHH-HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991          623 YLRASCYHAIGEYRE-AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (781)
Q Consensus       623 ~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  683 (781)
                      .++|.++...|++.+ +..+++++++++|+++.+.-           .....+.|+++...|
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d-----------~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE-----------YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHHHc
Confidence            999999999999976 56899999999999987432           123445566665555

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=1.7e-25  Score=226.90  Aligned_cols=246  Identities=15%  Similarity=0.060  Sum_probs=226.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 003991          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER  489 (781)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  489 (781)
                      ++..++.+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999 4433    4569999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  569 (781)
                      |.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999955555679999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccC---CC-----CHHHHHHHHHHHHHhCCHHHH
Q 003991          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGID---PS-----NIECLYLRASCYHAIGEYREA  638 (781)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A  638 (781)
                      |+..|++++...|++..++..+|.++...|+   +++|+..|+++++..   |+     ...++..+|.+|...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999   999999999999875   44     236899999999999999999


Q ss_pred             HHHHHHHHhhccCcHHHHHHHH
Q 003991          639 IKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       639 ~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      +.+|+++++++|+++.++-.++
T Consensus       241 ~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          241 DAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHHHHhcCccHHHHHHHhh
Confidence            9999999999999998665443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=3.6e-25  Score=215.72  Aligned_cols=198  Identities=17%  Similarity=0.138  Sum_probs=103.7

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (781)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (781)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991          492 VNFKF-----------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (781)
Q Consensus       492 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (781)
                      ++...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            66655           555555555555555555555555555555555555555555555555544 444444555555


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55555555555555555544444444444444444444444444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=6e-25  Score=214.19  Aligned_cols=198  Identities=20%  Similarity=0.181  Sum_probs=92.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (781)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~  526 (781)
                      .++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHc-----------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991          527 LSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (781)
Q Consensus       527 ~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (781)
                      +...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++ +++.++..+|.++
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~  161 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY  161 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence            5554           555555555555555555555555555555555555555555555555444 4445555555555


Q ss_pred             HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 003991          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  645 (781)
                      ...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus       162 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          162 LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=6.1e-23  Score=229.36  Aligned_cols=222  Identities=9%  Similarity=-0.011  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF  496 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  496 (781)
                      ..++..|++++...|.++.+|+.+|..+..       .|+++       +|+..|+++++ ..|++..+|..+|.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79987       99999999997 8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHcCCHHHHHHHH
Q 003991          497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL  574 (781)
Q Consensus       497 ~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~  574 (781)
                      |++++|...|++++...|.++ .+|..++.++...|++++|+..|.++++..|.....+...+.+ +...|++++|..+|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999985 6999999999999999999999999999988877777766665 34689999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      +++++..|+++.+|..++.++...|++++|..+|++++...|.++.    +|...+......|+.+.+..++.++++..|
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999999999999998766544    888889999999999999999999999999


Q ss_pred             CcH
Q 003991          651 DSM  653 (781)
Q Consensus       651 ~~~  653 (781)
                      +++
T Consensus       495 ~~~  497 (530)
T 2ooe_A          495 EEY  497 (530)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=4.7e-23  Score=230.28  Aligned_cols=311  Identities=12%  Similarity=0.004  Sum_probs=240.8

Q ss_pred             CCccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-------------HHccCHH
Q 003991          377 KSISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYP--EALIGRGTAR-------------AFQRELE  432 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~  432 (781)
                      ++.+...|...+.....         .|+++.|+.+|+++++ .|...  ..|...+...             ...+++.
T Consensus       117 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~  195 (530)
T 2ooe_A          117 EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYM  195 (530)
T ss_dssp             STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred             CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHH
Confidence            34455566555555443         7899999999999998 56543  2332222211             1345677


Q ss_pred             HHHHHHHH------HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCHHHH
Q 003991          433 AAISDFTE------AIQS-----NPSA-------GEAWKRRGQARAAL----GES----VEAIQDLSKALEFEPNSADIL  486 (781)
Q Consensus       433 ~A~~~~~~------al~~-----~p~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~  486 (781)
                      .|...+..      .+..     .|..       ...|..........    ++.    ..++..|++++...|.++.+|
T Consensus       196 ~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w  275 (530)
T 2ooe_A          196 NARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIW  275 (530)
T ss_dssp             HHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHH
Confidence            88777665      3332     2322       23444433322221    232    478899999999999999999


Q ss_pred             HHHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Q 003991          487 HERGIVNFK-------FKDFN-------AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (781)
Q Consensus       487 ~~la~~~~~-------~~~~~-------~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (781)
                      ..+|..+..       .|+++       +|+..|+++++ ..|++..+|..++.++...|++++|...|++++...|.++
T Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred             HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence            999999986       79977       99999999997 7999999999999999999999999999999999999885


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991          552 -EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (781)
Q Consensus       552 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (781)
                       .+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++.++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence             6999999999999999999999999999988887777776665 34699999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       630 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      ...|++++|...|++++...|.+++...   ..+..........|+.+.+...+.++....|
T Consensus       436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~---~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          436 SHLNEDNNTRVLFERVLTSGSLPPEKSG---EIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             TTTTCHHHHHHHHHHHHHSCCSCGGGCH---HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HhCCCHhhHHHHHHHHHhccCCCHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999998776554110   1122222233456888888888888887777

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=5e-25  Score=237.48  Aligned_cols=300  Identities=18%  Similarity=0.155  Sum_probs=259.1

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS  447 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~  447 (781)
                      ......++.+|..++..|++++|+.+|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            44577889999999999999999999999999999984    67899999999999999999999999886      344


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHH
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNA  501 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~  501 (781)
                      ...++..+|.++...|++++|+.++++++.+.|..      ..++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            56789999999999999999999999999886643      5589999999999999                    999


Q ss_pred             HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHH
Q 003991          502 AVEDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK  569 (781)
Q Consensus       502 A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~  569 (781)
                      |+.++++++..      .+....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999999886      23335688999999999999999999999999886654      3489999999999999999


Q ss_pred             HHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHH
Q 003991          570 ALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYRE  637 (781)
Q Consensus       570 A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  637 (781)
                      |+.++++++...+..      ..++..+|.++...|++++|+.+|++++...+..      ..++..+|.+|..+|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999887655      6788999999999999999999999999875543      6789999999999999999


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003991          638 AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINS  678 (781)
Q Consensus       638 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (781)
                      |+.+|++++++.+.... ......++...+..+...|+...
T Consensus       326 A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGD-KSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhhHhHH
Confidence            99999999998655422 12334566677777777776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=2.3e-24  Score=232.91  Aligned_cols=275  Identities=18%  Similarity=0.157  Sum_probs=246.5

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS  447 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~  447 (781)
                      +.....++.+|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            34567788999999999999999999999999999987    58899999999999999999999999987      466


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVE  504 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~  504 (781)
                      ...++..+|.++...|++++|+.++++++..      .+....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6789999999999999999999999999988      45557799999999999999                 999999


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHcCCHHHHHH
Q 003991          505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE  572 (781)
Q Consensus       505 ~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~  572 (781)
                      ++++++.+.      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999998764      22346889999999999999999999999999877543      388999999999999999999


Q ss_pred             HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHH
Q 003991          573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      ++++++...+..      ..++..+|.++...|++++|+.+|++++...+.      ...++..+|.+|..+|++++|+.
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999999887643      678899999999999999999999999987543      24689999999999999999999


Q ss_pred             HHHHHHhhccCc
Q 003991          641 DYDAALDLELDS  652 (781)
Q Consensus       641 ~~~~al~~~p~~  652 (781)
                      +|++++++.+..
T Consensus       365 ~~~~al~~~~~~  376 (411)
T 4a1s_A          365 YAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHCCHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=5.4e-24  Score=222.55  Aligned_cols=272  Identities=19%  Similarity=0.195  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE  450 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  450 (781)
                      ...++..|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            56778899999999999999999999999999984    67889999999999999999999999887      344577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE  504 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~  504 (781)
                      ++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999886543      4488999999999999                    999999


Q ss_pred             HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHH
Q 003991          505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE  572 (781)
Q Consensus       505 ~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~  572 (781)
                      ++++++...      +....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998762      2335688999999999999999999999999886543      3489999999999999999999


Q ss_pred             HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHH
Q 003991          573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      ++++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            999999876654      6788999999999999999999999999875432      4588999999999999999999


Q ss_pred             HHHHHHhhccCc
Q 003991          641 DYDAALDLELDS  652 (781)
Q Consensus       641 ~~~~al~~~p~~  652 (781)
                      ++++++++.++.
T Consensus       325 ~~~~a~~~~~~~  336 (338)
T 3ro2_A          325 FAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=1.7e-22  Score=205.93  Aligned_cols=257  Identities=12%  Similarity=0.006  Sum_probs=225.9

Q ss_pred             hccCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHH
Q 003991          374 SKSKSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGE  450 (781)
Q Consensus       374 ~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~  450 (781)
                      ....|.+ .+..+.++..++..|+++.|+..++.   .+|....++..++..+...+++++|+..+++++..  +|+++.
T Consensus        26 ~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~  102 (291)
T 3mkr_A           26 KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT  102 (291)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH
T ss_pred             ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH
Confidence            3444544 45778889999999999999998866   25656778889999999999999999999999986  699999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHH
Q 003991          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALS  528 (781)
Q Consensus       451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la--~~~~  528 (781)
                      +++.+|.++...|++++|+..+++     |.+..++..+|.++...|++++|+..++++++.+|++.......+  .++.
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~  177 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA  177 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh
Confidence            999999999999999999999998     889999999999999999999999999999999999875544434  3344


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKD  607 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~  607 (781)
                      ..|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999976 5789


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003991          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY  642 (781)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  642 (781)
                      ++++++.+|+++.+.-    +..+.+.|+++..-|
T Consensus       258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            9999999999987653    455666666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.91  E-value=9.1e-23  Score=221.98  Aligned_cols=85  Identities=14%  Similarity=-0.035  Sum_probs=50.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcccchhhhhhHHHHHHhhhCH---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC--
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELH---KHVIRDCDKALQLDPTLLQAYILKGCAFSALG--  117 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~~~~~~~~~rA~~~~~~~~~---~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--  117 (781)
                      +..+++.|++++|+.+|+++++.. ++..++++|.+|+..|++   ++|+..++++++.   ++.+++.+|.++...|  
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence            445789999999999999998774 667788999999999988   9999999999976   7789999999877777  


Q ss_pred             ---CHHHHHHHHHHHHh
Q 003991          118 ---RKEEALSVWEKGYE  131 (781)
Q Consensus       118 ---~~~~A~~~~~~al~  131 (781)
                         ++++|+..|+++++
T Consensus        86 ~~~~~~~A~~~~~~Aa~  102 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFA  102 (452)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence               88999999999943

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.3e-21  Score=198.26  Aligned_cols=232  Identities=17%  Similarity=0.159  Sum_probs=182.2

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL  486 (781)
Q Consensus       411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  486 (781)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            456677777777777777777777777777776  5666777777777777    777777777777777764  67777


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHH
Q 003991          487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (781)
Q Consensus       487 ~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la  558 (781)
                      +.+|.++..    .+++++|+.+|++++..  +++.++..+|.++..    .+++++|+.+|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            777777777    77888888888887776  367778888888887    888888888888888765  567788888


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       559 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      .++..    .+++++|+.+|+++++.  .++.++..+|.++..    .+++++|+.+|+++++..|  +.+++.+|.+|.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            88887    88888888888888876  457888888888888    8888889888888888765  788888999998


Q ss_pred             H----hCCHHHHHHHHHHHHhhccCcHH
Q 003991          631 A----IGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       631 ~----~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .    .+++++|+.+|++++++.|++..
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            8    88899999999999988887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=8.9e-23  Score=202.79  Aligned_cols=219  Identities=22%  Similarity=0.217  Sum_probs=152.5

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      ..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      +...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888888888887777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      .+++++...|.+..++..+|.++...|++++|+.++++++..+|+++.++..++.+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            77777777777777777777777777777777777777777777777776666655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=9.2e-23  Score=202.69  Aligned_cols=216  Identities=19%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      +..++.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       495 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      ..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666665555555555566555556666666555


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      ++++...|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.+..
T Consensus       183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.91  E-value=5.1e-23  Score=208.82  Aligned_cols=247  Identities=18%  Similarity=0.154  Sum_probs=205.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          391 QVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      ....|++++|+..|+++++..    |.++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            344688899999999998873    4567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (781)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  546 (781)
                      +|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|++.......+.. ...|++++|+..+.+++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999888666655544 5668999999999999888


Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      .|.+...+. ++.++...++.++|+..+++++...|.    ++.++..+|.++...|++++|+.+|++++..+|++..  
T Consensus       174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  250 (275)
T 1xnf_A          174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV--  250 (275)
T ss_dssp             SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--
T ss_pred             CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH--
Confidence            887755544 677777888888899999888876663    3678888999999999999999999999998887643  


Q ss_pred             HHHHHHHHHhCCHHHHHHHH
Q 003991          623 YLRASCYHAIGEYREAIKDY  642 (781)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~  642 (781)
                       ..+.++..+|++++|+..|
T Consensus       251 -~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 -EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHC----
T ss_pred             -HHHHHHHHHHHHHhhHHHH
Confidence             3377888888898888877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=2.8e-23  Score=224.37  Aligned_cols=283  Identities=18%  Similarity=0.142  Sum_probs=249.2

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 003991          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF------EPNS  482 (781)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~  482 (781)
                      .....++.+|..+...|++++|+.+|++++...|.+.    .++..+|.++...|++++|+.++++++..      .|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3456678899999999999999999999999999986    58999999999999999999999999988      4556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 003991          483 ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGE-----------------YKKAEEA  539 (781)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~  539 (781)
                      ..++..+|.++...|++++|+.++++++..      .+....++..+|.++...|+                 +++|+.+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            789999999999999999999999999988      45556789999999999999                 9999999


Q ss_pred             HHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHH
Q 003991          540 HLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKD  607 (781)
Q Consensus       540 ~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~  607 (781)
                      +++++.+.      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.+
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99998864      33467899999999999999999999999998876432      3889999999999999999999


Q ss_pred             HHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 003991          608 LSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC  681 (781)
Q Consensus       608 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  681 (781)
                      |++++...+..      ..++..+|.++..+|++++|+.+|++++++.++... ....+.+++..|..+...|++++|+.
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999887643      678999999999999999999999999998765432 23445678889999999999999999


Q ss_pred             HHhhhcCCCcccHHH
Q 003991          682 WFDIDGDIDPLFKEY  696 (781)
Q Consensus       682 ~~~~~~~~~p~~~~~  696 (781)
                      +|.++..+.+....-
T Consensus       365 ~~~~al~~~~~~~~~  379 (411)
T 4a1s_A          365 YAEQHLQLAXXXXXX  379 (411)
T ss_dssp             HHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999988765544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.90  E-value=9.6e-23  Score=219.52  Aligned_cols=279  Identities=18%  Similarity=0.143  Sum_probs=244.6

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Q 003991          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEFE------PN  481 (781)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~  481 (781)
                      +....+++.+|.++...|++++|+.+|++++...|.++    .++..+|.++...|++++|+.++++++...      |.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34567889999999999999999999999999999884    678999999999999999999999998873      33


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 003991          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKK  535 (781)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~  535 (781)
                      ...++..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            46789999999999999999999999999886543      4588999999999999                    999


Q ss_pred             HHHHHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHH
Q 003991          536 AEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKK  603 (781)
Q Consensus       536 A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~  603 (781)
                      |+..+.+++..      .+....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999999887      344567899999999999999999999999998765443      389999999999999999


Q ss_pred             HHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991          604 AIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN  677 (781)
Q Consensus       604 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (781)
                      |+.++++++...|..      ..++..+|.++...|++++|+.+|++++++.+.... ....+.++...|..+...|+++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999886654      678999999999999999999999999998765532 2334567788899999999999


Q ss_pred             hHHHHHhhhcCCCc
Q 003991          678 SEFCWFDIDGDIDP  691 (781)
Q Consensus       678 ~A~~~~~~~~~~~p  691 (781)
                      +|+.+|.++..+.+
T Consensus       325 ~A~~~~~~al~~~~  338 (406)
T 3sf4_A          325 QAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=7.5e-23  Score=213.85  Aligned_cols=278  Identities=18%  Similarity=0.153  Sum_probs=240.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSAD  484 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  484 (781)
                      ...++..|..+...|++++|+.+|++++...|.+    ..++..+|.++...|++++|+.++++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            3567889999999999999999999999999998    467889999999999999999999999887      334477


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKKAEE  538 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~  538 (781)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999876543      3488899999999999                    999999


Q ss_pred             HHHHHHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHH
Q 003991          539 AHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       539 ~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      .+++++..      .+....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999876      33446789999999999999999999999999775532      3388999999999999999999


Q ss_pred             HHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 003991          607 DLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEF  680 (781)
Q Consensus       607 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  680 (781)
                      ++++++...+..      ..++..+|.++...|++++|+.++++++++.|.... ......++...|..+...|++++|.
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999999886654      678899999999999999999999999998765432 2344567888899999999999999


Q ss_pred             HHHhhhcCCCccc
Q 003991          681 CWFDIDGDIDPLF  693 (781)
Q Consensus       681 ~~~~~~~~~~p~~  693 (781)
                      .+|.++..+.+..
T Consensus       324 ~~~~~a~~~~~~~  336 (338)
T 3ro2_A          324 HFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=9e-22  Score=196.85  Aligned_cols=212  Identities=19%  Similarity=0.092  Sum_probs=179.4

Q ss_pred             CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991          445 NPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (781)
Q Consensus       445 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  523 (781)
                      +|.. +.++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            4443 567777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          524 GLALSSIGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      |.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence            8888888888888888888888  77778888888888888888888888888888888888888888899999999999


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      ++|+..++++++..|.++.++..++.++...|++++|..++++++++.|+++...
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            9999999999888888888888899999999999999999999999998887644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=4e-22  Score=188.87  Aligned_cols=174  Identities=25%  Similarity=0.320  Sum_probs=154.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (781)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (781)
                      +++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+...++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888888888888998


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      +...++++.|...+.+++...|.+..++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCcHH
Q 003991          641 DYDAALDLELDSME  654 (781)
Q Consensus       641 ~~~~al~~~p~~~~  654 (781)
                      +|+++++++|+++.
T Consensus       163 ~~~~al~~~p~~a~  176 (184)
T 3vtx_A          163 YFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHTTHHHHH
T ss_pred             HHHHHHhCCccCHH
Confidence            99999999887643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=2.4e-22  Score=203.77  Aligned_cols=251  Identities=19%  Similarity=0.157  Sum_probs=220.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 003991          421 RGTARAFQRELEAAISDFTEAIQSN----PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (781)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (781)
                      ++..+...|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA   90 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence            3344455689999999999999974    456789999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       497 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      |++++|+.++++++..+|.++.++..+|.++...|++++|+..+++++...|++......++.. ...|++++|+..+++
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998766666544 667999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc
Q 003991          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  652 (781)
                      ++...|.+...+. ++.++...++.++|+..+.+++...|..    +.++..+|.++...|++++|+.+|+++++++|++
T Consensus       170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            9999998766654 7778888899999999999999887743    6899999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 003991          653 MEKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (781)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  683 (781)
                      ...+          +.++...+++++|+..+
T Consensus       249 ~~~~----------~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVEH----------RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHHH----------HHHHHHHHHHHHC----
T ss_pred             HHHH----------HHHHHHHHHHHhhHHHH
Confidence            5422          45666778888888776

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=4e-21  Score=194.71  Aligned_cols=234  Identities=18%  Similarity=0.164  Sum_probs=216.7

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  452 (781)
                      .|.++.+++.+|..++..|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            467789999999999999999999999999998  7889999999999999    999999999999999985  78999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      +.+|.++..    .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            999999999    999999999999999974  89999999999999    999999999999999976  688999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991          525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (781)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (781)
                      .++..    .+++++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|+++++..|  +.++..+|.++.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            99999    99999999999999987  457899999999999    9999999999999999866  889999999999


Q ss_pred             H----CCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          597 G----LGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       597 ~----~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      .    .+++++|+.+|+++++..|.++..+
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9    9999999999999999988754433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=2.1e-21  Score=190.14  Aligned_cols=212  Identities=13%  Similarity=-0.033  Sum_probs=153.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      .|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666667777777777777766666666777777


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          525 LALSSI-GEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       525 ~~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      .++... |++++|+..+++++.  ..|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            777777 777777777777776  55556677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          602 KKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       602 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      ++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++...
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            777777777777777 7777777777777777777777777777777777776643

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=3.5e-21  Score=188.58  Aligned_cols=211  Identities=15%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (781)
Q Consensus       412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (781)
                      |.++.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Q 003991          492 VNFKF-KDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (781)
Q Consensus       492 ~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  568 (781)
                      ++... |++++|+..+++++.  ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            44444 444555544444444  333334445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          569 KALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       569 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      +|+..+++++...| .++..+..++.++...|++++|..+++.+....|+++.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  219 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ  219 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence            55555555555555 5555555555555555555555555555555555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=3e-21  Score=192.96  Aligned_cols=210  Identities=16%  Similarity=0.107  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999988888888898888


Q ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003991          461 ALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            88999999998888888  7777778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (781)
                      .+++++...|.+..++..++.++...|++++|..++++++...|+++.+...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            8888888888777778888888888888888888888888887777765543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.89  E-value=9.4e-22  Score=213.99  Aligned_cols=257  Identities=11%  Similarity=0.017  Sum_probs=152.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~  454 (781)
                      ++.+++.+|..+...+...++...++..... .+.++.+++.+|.+|...+.+++    +..++..+...+|.   +++.
T Consensus       105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~  181 (452)
T 3e4b_A          105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVE  181 (452)
T ss_dssp             CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHH
Confidence            3446666666666655433332222222221 12345566666666666663333    33333333333332   6666


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 003991          455 RGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (781)
Q Consensus       455 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-  526 (781)
                      +|.+|...|   ++++|+.+|+++.+..|.....++.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ 
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~  258 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL  258 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            666666666   666677777777666666666666666666554    56666777766665   6666666666666 


Q ss_pred             H--HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 003991          527 L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (781)
Q Consensus       527 ~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--  597 (781)
                      +  ...+++++|+.+|+++.+.  .++.+++.+|.+|. .|     ++++|+.+|+++.   +.++.+++.+|.+|..  
T Consensus       259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~  332 (452)
T 3e4b_A          259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY  332 (452)
T ss_dssp             HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred             HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence            3  3466666677776666643  35666666666666 44     6666777666666   6666666666666655  


Q ss_pred             --CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhcc
Q 003991          598 --LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  650 (781)
                        ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.+|..+|+++.+..+
T Consensus       333 g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          333 LGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             TSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred             CCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence              33666677766666653  345666666666653    3466666666666666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=2.7e-21  Score=183.14  Aligned_cols=172  Identities=22%  Similarity=0.288  Sum_probs=132.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      ++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhCcccH
Q 003991          540 HLKAIQLDRNFL  551 (781)
Q Consensus       540 ~~~al~~~~~~~  551 (781)
                      |+++++.+|+++
T Consensus       164 ~~~al~~~p~~a  175 (184)
T 3vtx_A          164 FKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHTTHHHH
T ss_pred             HHHHHhCCccCH
Confidence            777777777653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=1.5e-21  Score=201.58  Aligned_cols=250  Identities=9%  Similarity=-0.026  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 003991          398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  462 (781)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            688899999999999999999999998874       4775       889999999998 6898888999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH  540 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  540 (781)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998888876 888899998889999999999999998888887777766655443 68899999999


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                      +++++.+|+++.+|..++.++...|++++|+.+|++++..   .| ....+|..++..+...|++++|..+++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            9999888888888888888888889999999999998885   44 3677888888888888999999999999888888


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      +++.... ++.+           ....+.+.++|+++++...+
T Consensus       273 ~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l  303 (308)
T 2ond_A          273 EEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL  303 (308)
T ss_dssp             TTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred             cccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence            7543221 1111           11126677888888765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=7.8e-22  Score=216.03  Aligned_cols=223  Identities=17%  Similarity=0.162  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA  475 (781)
Q Consensus       397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (781)
                      +++++..++++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444445544444555555555555555555555 55555555555555555555555555555555555555555555


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (781)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (781)
                      ++++|+ ..++..+|.++...+.                         +......|++++|+..|+++++.+|+++.+|.
T Consensus       164 l~~~p~-~~~~~~lg~~~~~~~~-------------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  217 (474)
T 4abn_A          164 LTHCKN-KVSLQNLSMVLRQLQT-------------------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY  217 (474)
T ss_dssp             HTTCCC-HHHHHHHHHHHTTCCC-------------------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhhCCC-HHHHHHHHHHHHHhcc-------------------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            555554 4455555555554400                         00000005555555555555555555555555


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHH
Q 003991          556 HLTQFYQDL--------ANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL  624 (781)
Q Consensus       556 ~la~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  624 (781)
                      .+|.++...        |++++|+.+|++++.++|   .++.+++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus       218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~  297 (474)
T 4abn_A          218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR  297 (474)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            555555555        666666666666666666   666666666766666777777777777777777776667777


Q ss_pred             HHHHHHHhCCHHHHHHHHHHH
Q 003991          625 RASCYHAIGEYREAIKDYDAA  645 (781)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~a  645 (781)
                      ++.++..+|++++|+..+.+.
T Consensus       298 l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          298 EQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            777777777777776665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=5e-22  Score=217.55  Aligned_cols=209  Identities=18%  Similarity=0.130  Sum_probs=187.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF-NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      .+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            356677777777777888888888888888888888 8888888888888888888888888888888888888888888


Q ss_pred             HHhhCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHH
Q 003991          543 AIQLDRNFLEAWGHLTQFYQDL---------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--------GQHKKAI  605 (781)
Q Consensus       543 al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A~  605 (781)
                      +++.+|+ ..++..+|.++...         |++++|+..|++++..+|+++.+|..+|.++...        |++++|+
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            8888888 68888888888888         9999999999999999999999999999999999        9999999


Q ss_pred             HHHHHhhccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHH
Q 003991          606 KDLSSGLGIDP---SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA  673 (781)
Q Consensus       606 ~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  673 (781)
                      ..|+++++++|   +++.+++.+|.+|..+|++++|+..|+++++++|+++.++..++.++...+..-...
T Consensus       242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   999999999999999999999999999999999999999999998888776554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=1.4e-20  Score=194.13  Aligned_cols=223  Identities=10%  Similarity=-0.003  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGES-------VEAIQDLSKALE-FEPNSADILHERGIVNFKF  496 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  496 (781)
                      ++|+..|++++..+|.++.+|+.+|.++..       .|++       ++|+..|++++. +.|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Q 003991          497 KDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECL  574 (781)
Q Consensus       497 ~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  574 (781)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|++++|+.+|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999887 999999999999999999999999999999988888877766544 79999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      ++++..+|+++.+|..+|.++...|++++|+..|++++..   .| ....+|..++..+...|++++|...++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999995   55 3788999999999999999999999999999999


Q ss_pred             CcHH
Q 003991          651 DSME  654 (781)
Q Consensus       651 ~~~~  654 (781)
                      ++.+
T Consensus       273 ~~~~  276 (308)
T 2ond_A          273 EEYE  276 (308)
T ss_dssp             TTTS
T ss_pred             cccc
Confidence            8654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.87  E-value=3.7e-20  Score=181.99  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      .+++.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|++++..+|++..++..+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            3445555555555555555555555555555555 555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSA  483 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~  483 (781)
                      ++...|++++|+..++++++..|+++
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            55555555555555555555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.87  E-value=4.5e-20  Score=181.38  Aligned_cols=214  Identities=15%  Similarity=0.156  Sum_probs=193.8

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003991          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER  489 (781)
Q Consensus       411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  489 (781)
                      .+.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|.++.++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            356789999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLDKENK-------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQF  560 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~  560 (781)
                      |.++...|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            9999999999999999999999999998       66999999999999999999999999999999  99999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      +...|     ...++++..+.+.....+  .+......+.+++|+.+|+++++++|+++.+...++.+...
T Consensus       163 ~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~  226 (228)
T 4i17_A          163 FYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM  226 (228)
T ss_dssp             HHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             HHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence            97655     445677777777665544  34445567789999999999999999999999998887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=8.1e-21  Score=215.60  Aligned_cols=175  Identities=17%  Similarity=0.267  Sum_probs=139.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Q 003991          479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (781)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  558 (781)
                      .|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..+++++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56667777777777777777777777777777777777777777788888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 003991          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (781)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (781)
                      .++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhhccCcH
Q 003991          639 IKDYDAALDLELDSM  653 (781)
Q Consensus       639 ~~~~~~al~~~p~~~  653 (781)
                      .+.+++++++.|+..
T Consensus       165 ~~~~~kal~l~~~~~  179 (723)
T 4gyw_A          165 DERMKKLVSIVADQL  179 (723)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhHH
Confidence            888888887776543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=4.7e-20  Score=196.94  Aligned_cols=234  Identities=15%  Similarity=0.085  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 003991          417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A  483 (781)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~  483 (781)
                      .++.+|.++...|++++|+.+|++++..   .++   ...++..+|.++...|++++|+.++.+++++.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445999999999999999999999987   233   45789999999999999999999999999985433       4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-cccH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL  551 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-~~~~  551 (781)
                      .++..+|.++...|++++|+.++++++...+..      ..++.++|.++...|++++|+.++++++.     .+ |...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            589999999999999999999999999875433      25889999999999999999999999999     46 7788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYID-----KRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY  623 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~  623 (781)
                      .++..+|.++...|++++|+.++++++.+.     |.....+..+|.++...|+   +.+|+..+++. ...|....++.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  343 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence            999999999999999999999999999874     3333346779999999999   88898888887 33444567889


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          624 LRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .+|.+|...|++++|..+|++++++...
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=198.94  Aligned_cols=252  Identities=14%  Similarity=0.076  Sum_probs=158.4

Q ss_pred             ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Q 003991          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-  445 (781)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  445 (781)
                      ...|..+..+..+|..++..|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++... 
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            457788888899999999999999999999998884        55566778888888888888888888888887762 


Q ss_pred             -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991          446 -------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (781)
Q Consensus       446 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  510 (781)
                             |....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   4445566777777777777777777777776653        2234455555666666666666666665555


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          511 KL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       511 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                      ..        .|....++..+|.++...|++++|+.++++++...+....     +                    ...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~--------------------~~~~  235 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF-----G--------------------SVDD  235 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----C------------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----C--------------------CCCc
Confidence            54        3333444555555555555555555555555543322100     0                    0011


Q ss_pred             CC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          583 RF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       583 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      ..      ...+...+..+...+.+.+|...+.++....|..+.++..+|.+|..+|++++|+.+|++++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            11      2233344555556677778888888888888888899999999999999999999999999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=2.8e-20  Score=198.72  Aligned_cols=302  Identities=12%  Similarity=0.017  Sum_probs=236.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHccCHHHHH-----------HHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEAL--IGR--GTARAFQRELEAAI-----------SDFTEA  441 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a  441 (781)
                      .+...+.-....+..+++++|..+++++.+.-+   .+...+  +.+  .+.....++++.+.           ..++++
T Consensus        11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i   90 (383)
T 3ulq_A           11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI   90 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence            355566667778899999999999999866432   344433  222  22333345555555           555554


Q ss_pred             HHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991          442 IQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALEF---EPN---SADILHERGIVNFKFKDFNAAVEDLSAC  509 (781)
Q Consensus       442 l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (781)
                      -. .|....      .++.+|.++...|++++|+.+|++++.+   .++   ...++..+|.++...|++++|+.+++++
T Consensus        91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a  169 (383)
T 3ulq_A           91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA  169 (383)
T ss_dssp             HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33 333322      3455999999999999999999999987   232   3578999999999999999999999999


Q ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          510 VKLDKEN-------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       510 ~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      +.+.+..       ..++..+|.++...|++++|+.++++++...+..      ..++.++|.+|...|++++|+.++++
T Consensus       170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9984433       4588999999999999999999999999886543      46899999999999999999999999


Q ss_pred             HHh-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CCCHHHHHHHHHHHHHhCC---HHHHHHHH
Q 003991          577 VLY-----ID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-----PSNIECLYLRASCYHAIGE---YREAIKDY  642 (781)
Q Consensus       577 al~-----~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~  642 (781)
                      ++.     .+ |..+.++..+|.++...|++++|+.++++++.+.     |.....+..+|.++...|+   +.+|+..+
T Consensus       250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~  329 (383)
T 3ulq_A          250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL  329 (383)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            998     45 7778899999999999999999999999999874     3333446779999999999   78888887


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991          643 DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (781)
Q Consensus       643 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  690 (781)
                      ++. ...|       ....++..+|..+...|++++|..+|+++..+.
T Consensus       330 ~~~-~~~~-------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          330 ESK-MLYA-------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHT-TCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHC-cCHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            776 2222       233466788889999999999999998887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=5.2e-20  Score=208.95  Aligned_cols=175  Identities=18%  Similarity=0.256  Sum_probs=158.2

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      ..|.+++++..+|.++..+|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+++++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  535 (781)
                      |.++..+|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCccc
Q 003991          536 AEEAHLKAIQLDRNF  550 (781)
Q Consensus       536 A~~~~~~al~~~~~~  550 (781)
                      |++.+++++++.|+.
T Consensus       164 A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          164 YDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhH
Confidence            999999988876653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.84  E-value=7.1e-19  Score=177.39  Aligned_cols=242  Identities=14%  Similarity=0.045  Sum_probs=163.9

Q ss_pred             HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHc
Q 003991          390 AQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AAL  462 (781)
Q Consensus       390 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~  462 (781)
                      .....|.+ ++|+.++.+++..+|++..+|..++.++...|  ++++++.++..++..+|++..+|...+.++    ...
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence            34455555 58999999999999999999999999999988  888888888888888888888888888888    555


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          463 ---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       463 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                         +++++++..+.++++.+|.+..+|...+.++...|.++  ++++++.++++.+|.+..+|...+.++...+...   
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~---  197 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA---  197 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence               66777777777777777777777777777777777766  6677777777777777777766666666655400   


Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHhhccC-
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID-  615 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~-  615 (781)
                                  .             ...++++++++.+++..+|.+..+|+.++.++...|+..+ ....+.+++..+ 
T Consensus       198 ------------~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  252 (306)
T 3dra_A          198 ------------T-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK  252 (306)
T ss_dssp             ------------C-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred             ------------h-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence                        0             0014555555555555555555555555555555555333 333444444443 


Q ss_pred             --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-hccCcHHHHHHH
Q 003991          616 --PSNIECLYLRASCYHAIGEYREAIKDYDAALD-LELDSMEKFVLQ  659 (781)
Q Consensus       616 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~  659 (781)
                        |.++.++..+|.+|.+.|+.++|+++|+.+.+ .+|-....|...
T Consensus       253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~  299 (306)
T 3dra_A          253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ  299 (306)
T ss_dssp             TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence              55566666666666666666666666666664 566665555444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.84  E-value=1e-18  Score=176.19  Aligned_cols=213  Identities=11%  Similarity=0.014  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLAL----SSI---GEYKKA  536 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~----~~~---g~~~~A  536 (781)
                      ++|+..+.+++.++|++..+|...+.++...+  ++++++.++..++..+|.+..+|...+.++    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            45566666666666666666666666666555  666666666666666666666666666666    444   567777


Q ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC------HHHHHHHH
Q 003991          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE--KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ------HKKAIKDL  608 (781)
Q Consensus       537 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~  608 (781)
                      +.++.++++.+|.+..+|...+.++...|.++  +++.+++++++.+|.+..+|..++.++...+.      ++++++++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~  209 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV  209 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence            77777777777777777777777777777777  88888888888888888888888888888877      99999999


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHHHHHHhchhh
Q 003991          609 SSGLGIDPSNIECLYLRASCYHAIGEYRE-AIKDYDAALDLE---LDSMEKFVLQCLAFYQKEIALYTASKINS  678 (781)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (781)
                      .+++..+|++..+|..++.++...|+..+ ...++.++++++   |.++.++..++.++...+....+..-++.
T Consensus       210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            99999999999999999999999998555 556888888877   88999999999888765544333333333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=3.9e-17  Score=187.62  Aligned_cols=242  Identities=14%  Similarity=0.114  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------------  447 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------  447 (781)
                      +..|+.+|.++...|++++|+..|.++     +++..+..+|.++...|++++|+++|..+.+..++             
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence            556666666666666666666666553     55566666666666666666666666665554432             


Q ss_pred             --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003991          448 --------------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (781)
Q Consensus       448 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  513 (781)
                                    +...+..+|..+...|++++|..+|.++        ..|..++.++.+.|++++|++.++++    
T Consensus      1180 l~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A         1180 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred             hcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence                          1122333444444444444444444443        23444444444444444444444444    


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003991          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (781)
Q Consensus       514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (781)
                       .+..+|...+.++...|++..|..+... +..   +++.+..++..|...|.+++|+.++++++.+++.+...+..+|.
T Consensus      1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A         1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred             -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence             2334444444444444444444444332 222   23344567777888888888888888888888888888877777


Q ss_pred             HHHH--CCCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          594 LLHG--LGQHKKAIKDLSSGLGIDP-----SNIECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       594 ~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                      ++.+  -++..++++.|...+.+.|     .+...|..+..+|.+-|+++.|+...-.
T Consensus      1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            7655  4567777788887777766     5677888888888888888888844433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=9.9e-21  Score=195.55  Aligned_cols=207  Identities=14%  Similarity=0.069  Sum_probs=157.2

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 003991          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--  445 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  445 (781)
                      ..+..+..+..+|.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999987        35567889999999999999999999999999874  


Q ss_pred             ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991          446 ------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (781)
Q Consensus       446 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  511 (781)
                            |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  556778999999999999999999999999998        666678899999999999999999999999997


Q ss_pred             hCCC---------CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          512 LDKE---------NK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       512 ~~p~---------~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      ..+.         ..      ..+...+..+...+.+.+|...+.++....|....++..+|.+|...|++++|+.+|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6432         11      22223333344445555566666666666666667777777777777777777777777


Q ss_pred             HHhhCC
Q 003991          577 VLYIDK  582 (781)
Q Consensus       577 al~~~~  582 (781)
                      ++++.|
T Consensus       304 al~l~~  309 (311)
T 3nf1_A          304 AMRSRK  309 (311)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=3.2e-19  Score=182.28  Aligned_cols=205  Identities=14%  Similarity=0.010  Sum_probs=137.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHH
Q 003991          492 VNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQ  559 (781)
Q Consensus       492 ~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~  559 (781)
                      ++...|++++|+.+|.+++.+.+.      ...++.++|.+|..+|++++|+.+|++++.+.|..      ..++.++|.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444211      13455566666666666666666666666655432      456778888


Q ss_pred             HHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-------HHHHH
Q 003991          560 FYQDL-ANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-------CLYLR  625 (781)
Q Consensus       560 ~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l  625 (781)
                      +|... |++++|+.+|++++.+.|..      ..++..+|.++..+|++++|+.+|++++...|++..       ++..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            88885 88888888888888876643      456788899999999999999999999988876543       67889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH--HHHhchhhHHHHHhhhcCCCcccHHHHH
Q 003991          626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL--YTASKINSEFCWFDIDGDIDPLFKEYWC  698 (781)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~  698 (781)
                      |.++..+|++++|+.+|+++++++|+........  .+...+..+  ...+++.+|+..|+++..++|.....|.
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~--~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~  278 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESN--FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN  278 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HH--HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH--HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence            9999999999999999999999999877643221  222222222  2456799999999999999997776653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.82  E-value=5.6e-19  Score=180.51  Aligned_cols=239  Identities=13%  Similarity=0.048  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--c-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          399 SAISIFDQILKEDPMYPEALIGRGTARAFQ--R-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA  475 (781)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (781)
                      +|.+++.++-+.-+.....+     .++..  + ++++|+..|.++              |.+|...|++++|+.+|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            35566666666555421111     11122  2 477777777776              45677778888888888888


Q ss_pred             HHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 003991          476 LEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSI-GEYKKAEEAHLK  542 (781)
Q Consensus       476 l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~  542 (781)
                      +.+.+.      ...++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.+|... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            776432      14577888888888888888888888888876543      45788899999996 999999999999


Q ss_pred             HHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHH
Q 003991          543 AIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-------AYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       543 al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      ++++.|..      ..++..+|.++...|++++|+.+|++++...|++..       ++..+|.++..+|++++|+.+|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99988754      567889999999999999999999999998886543       67889999999999999999999


Q ss_pred             HhhccCCCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHhhccCcHHHH
Q 003991          610 SGLGIDPSNIE-----CLYLRASCYH--AIGEYREAIKDYDAALDLELDSMEKF  656 (781)
Q Consensus       610 ~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~  656 (781)
                      +++.++|+...     .+..++..+.  ..+++++|+..|++++.++|.....+
T Consensus       224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~  277 (292)
T 1qqe_A          224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (292)
T ss_dssp             GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence            99999998654     3445666654  45789999999999999999775533

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.82  E-value=7.4e-19  Score=176.61  Aligned_cols=85  Identities=21%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GE  450 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~  450 (781)
                      .|.++..++.+|..++..|++++|+..|+++++.+|.+   +.+++.+|.++...|++++|+..|++++...|++   ..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            34444445555555555555555555555555444444   4444444444444444444444444444444422   33


Q ss_pred             HHHHHHHHHHH
Q 003991          451 AWKRRGQARAA  461 (781)
Q Consensus       451 ~~~~la~~~~~  461 (781)
                      +++.+|.++..
T Consensus        91 a~~~lg~~~~~  101 (261)
T 3qky_A           91 AEYERAMCYYK  101 (261)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.82  E-value=3.9e-18  Score=181.35  Aligned_cols=271  Identities=15%  Similarity=0.060  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G  449 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  449 (781)
                      ......+|..++..|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            46678889999999999999999999999877543     267889999999999999999999999875533      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----  516 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-----  516 (781)
                      .++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|..++++++...+..     
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            347789999999999999999999999875        2335677889999999999999999999999987752     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--c-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--F-LEAW----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S  585 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~-~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~  585 (781)
                      ..++..+|.++...|++++|...+++++...+.  . ....    ..++.++...|++++|...+++++...+..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            467889999999999999999999999876332  2 1111    134566889999999999999998876643    3


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      ..+..+|.++...|++++|...+++++...+.      ...++..+|.++...|++++|...+++++.+.+.
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~  325 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence            45778999999999999999999999876432      1257888999999999999999999999988653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.81  E-value=7.7e-19  Score=176.51  Aligned_cols=199  Identities=14%  Similarity=0.039  Sum_probs=180.9

Q ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 003991          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS--  482 (781)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  482 (781)
                      ....|.++..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|++++...|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            35688999999999999999999999999999999999998   8999999999999999999999999999998855  


Q ss_pred             -HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 003991          483 -ADILHERGIVNFK--------FKDFNAAVEDLSACVKLDKENKSAY-----------------TYLGLALSSIGEYKKA  536 (781)
Q Consensus       483 -~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A  536 (781)
                       +.+++.+|.++..        .|++++|+..|++++...|+++.+.                 +.+|.++...|++++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence             6789999999999        9999999999999999999986555                 8889999999999999


Q ss_pred             HHHHHHHHhhCcc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCC
Q 003991          537 EEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQ  600 (781)
Q Consensus       537 ~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~  600 (781)
                      +..|++++...|+   .+.+++.+|.+|...          |++++|+..|++++...|+++   .+...++.++...++
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999998   578999999999977          999999999999999999985   566778888888888


Q ss_pred             HHHHHH
Q 003991          601 HKKAIK  606 (781)
Q Consensus       601 ~~~A~~  606 (781)
                      ++.+..
T Consensus       248 ~~~~~~  253 (261)
T 3qky_A          248 LEGDAS  253 (261)
T ss_dssp             HHTCTT
T ss_pred             hhhhhH
Confidence            776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=7.3e-19  Score=201.14  Aligned_cols=185  Identities=11%  Similarity=-0.075  Sum_probs=99.0

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      .|.++..++..|   +..|++++|+..|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus       390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  466 (681)
T 2pzi_A          390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR  466 (681)
T ss_dssp             CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence            344444444444   44555555555555555        5555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      ..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++..+++++|.++.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555 55555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  565 (781)
                      .+|++++|+..|+++++++|++..++.++|.++...+
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            5555555555555555555555555555555554433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.80  E-value=3.5e-16  Score=179.83  Aligned_cols=203  Identities=15%  Similarity=0.108  Sum_probs=172.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      +...+...|..++..|+|++|+.+|.++        ..|..+|.++...|++++|++.++++     .+..+|...+.++
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHH
Confidence            3456778999999999999999999996        47899999999999999999999998     5678999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAE  537 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--~g~~~~A~  537 (781)
                      ...|++..|..+... +..   +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+  .++..+++
T Consensus      1261 ve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred             hhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999999998875 433   456677899999999999999999999999999998898888877765  56788899


Q ss_pred             HHHHHHHhhCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHCC
Q 003991          538 EAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       538 ~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g  599 (781)
                      +.|...+.+.|     .....|..+..+|.+-|+++.|+..+-.....            .+.+++.++.....|...+
T Consensus      1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence            99998888777     67889999999999999999999544433222            4677888888888888655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.80  E-value=3.8e-18  Score=181.65  Aligned_cols=233  Identities=15%  Similarity=0.142  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 003991          417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------SA  483 (781)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~  483 (781)
                      .++.+|..+...|++++|+.+|++++...+      ....++..+|.++...|+++.|+.++++++.+.+.       ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            456677777778888888888887776532      23457777888888888888888888888776442       14


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCcccHH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE  552 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~  552 (781)
                      .++..+|.++...|++++|+.++++++.+.+.      ...++.++|.++...|++++|+.++++++.     .+|....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            46778888888888888888888888876321      245788899999999999999999999998     7787888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL  624 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~  624 (781)
                      ++..+|.++...|++++|+.++++++.+.+     .....+..++.++...++   +.+|+.++++. ...|....++..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            999999999999999999999999998743     334556778888888888   88888888873 333444678889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhcc
Q 003991          625 RASCYHAIGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~al~~~p  650 (781)
                      +|.+|...|++++|..+|++++++..
T Consensus       342 la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=9.1e-19  Score=200.34  Aligned_cols=187  Identities=13%  Similarity=0.016  Sum_probs=170.2

Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003991          444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKAL--------EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (781)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~  515 (781)
                      .+|+++.+++..+   ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4677777777666   77899999999999999        889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (781)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (781)
                      +..+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++ +..|+++++.+|++..+++++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (781)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (781)
                      ..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999987666

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=3.4e-18  Score=165.01  Aligned_cols=186  Identities=12%  Similarity=0.049  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  528 (781)
                      .+.++..|..+...|++++|+..|++++..+|+++.+++..+.     ....             ...+.....+|.++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~-------------~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKNS-------------EISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTTS-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cchh-------------hhhHHHHHHHHHHHH
Confidence            3445555556666666666666666666666555555544220     0000             000122233888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--HHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ--HKKAIK  606 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~  606 (781)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|+  ...+..
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888876654  455667


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      .+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+..
T Consensus       146 ~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          146 DYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            77776654332 34677888888889999999999999999999753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.79  E-value=3.8e-17  Score=173.64  Aligned_cols=276  Identities=12%  Similarity=-0.004  Sum_probs=226.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------A  483 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  483 (781)
                      ..++..+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35667889999999999999999999999877542     267889999999999999999999999876543      2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----c
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----F  550 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~  550 (781)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            347889999999999999999999999874        233567788999999999999999999999998764     3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHCCCHHHHHHHHHHhhccCCCC----H
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYH-----LRGLLLHGLGQHKKAIKDLSSGLGIDPSN----I  619 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~  619 (781)
                      ..++..+|.++...|++++|..++++++...+  ..+..+.     .++.++...|++++|...+++++...|..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            56788999999999999999999999987633  2211121     34566889999999999999999887653    3


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      ..+..+|.++...|++++|...+++++...+.... ......++...+..+...|++++|..++..+..+.+
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            46788999999999999999999999988664321 122234666778888899999999999988876543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.79  E-value=8.6e-18  Score=158.61  Aligned_cols=172  Identities=19%  Similarity=0.216  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 003991          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY  642 (781)
Q Consensus       563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  642 (781)
                      ..|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|..++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888889999999999999999999


Q ss_pred             HHHHhhccCcHH
Q 003991          643 DAALDLELDSME  654 (781)
Q Consensus       643 ~~al~~~p~~~~  654 (781)
                      ++++++.|++..
T Consensus       168 ~~~~~~~~~~~~  179 (186)
T 3as5_A          168 KKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHCCCG
T ss_pred             HHHHHcCCCchh
Confidence            999888887653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.78  E-value=1.2e-16  Score=161.61  Aligned_cols=254  Identities=14%  Similarity=0.124  Sum_probs=165.5

Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       389 ~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      ......|.+. +|+.++.+++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3344567776 78999999999999999999999999887765          566777777777777777777777777


Q ss_pred             HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991          458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (781)
Q Consensus       458 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  534 (781)
                      ++...+.  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|..++.++...+...
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            7776663  6677777777777777777777777766666666 466666666666666666666666666665552100


Q ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-----------CCHHH
Q 003991          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL-----------GQHKK  603 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~  603 (781)
                      .+           +.       .+.  ...+.++++++++.+++..+|++..+|+.+..++...           +.+++
T Consensus       197 ~~-----------~~-------~~~--~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~  256 (331)
T 3dss_A          197 DS-----------GP-------QGR--LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS  256 (331)
T ss_dssp             ------------------------C--CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred             cc-----------cc-------ccc--cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence            00           00       000  0002345555555555555555555555444443333           35677


Q ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          604 AIKDLSSGLGIDPSNIECLYLRASCYH---AIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       604 A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                      +++.+.++++..|++..++..++.+..   ..|..++...++.++++++|-...-|..+...
T Consensus       257 el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          257 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            888888888888877655544444332   24677888888888888888877766555433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.78  E-value=1.5e-17  Score=157.02  Aligned_cols=171  Identities=15%  Similarity=0.231  Sum_probs=128.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      ....++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhCccc
Q 003991          540 HLKAIQLDRNF  550 (781)
Q Consensus       540 ~~~al~~~~~~  550 (781)
                      +++++...|++
T Consensus       167 ~~~~~~~~~~~  177 (186)
T 3as5_A          167 FKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHcCCCc
Confidence            77777666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.78  E-value=1.9e-16  Score=160.30  Aligned_cols=209  Identities=14%  Similarity=0.217  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                      +|+..+.+++..+|++..+|...+.++...+..            ..|   .-         ....+++++.++..++..
T Consensus        48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~---~~---------~~~~l~~EL~~~~~~L~~  103 (331)
T 3dss_A           48 SVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSP---EE---------SAALVKAELGFLESCLRV  103 (331)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCH---HH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccc---hh---------hhHHHHHHHHHHHHHHHh
Confidence            566666666666666666666666666554431            000   00         000134555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHH
Q 003991          513 DKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN-SEKALECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       513 ~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~  589 (781)
                      +|.+..+|...+.++...++  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|.
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            55555555555555555552  5555555555555555555555555555555555 35566666666666666666666


Q ss_pred             HHHHHHHHC--------------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHH
Q 003991          590 LRGLLLHGL--------------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDA  644 (781)
Q Consensus       590 ~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~  644 (781)
                      .++.++...              +.++++++++.+++..+|++..+|+.+..++...           +.++++++.+++
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            655555544              4589999999999999999999998776666655           568999999999


Q ss_pred             HHhhccCcHHHHHHHHHHHHHHH
Q 003991          645 ALDLELDSMEKFVLQCLAFYQKE  667 (781)
Q Consensus       645 al~~~p~~~~~~~~~~~~~~~~~  667 (781)
                      ++++.|++  .|..++.+.+..+
T Consensus       264 lle~~pd~--~w~l~~~~~~~~~  284 (331)
T 3dss_A          264 LQELEPEN--KWCLLTIILLMRA  284 (331)
T ss_dssp             HHHHCTTC--HHHHHHHHHHHHH
T ss_pred             HHhhCccc--chHHHHHHHHHHh
Confidence            99999998  5666666655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.78  E-value=4.2e-18  Score=181.33  Aligned_cols=233  Identities=15%  Similarity=0.097  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------  447 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  447 (781)
                      ...++.+|..++..|++++|+..|+++++..+      ..+.+++.+|.++...|+++.|+.++.+++...+.       
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            34678899999999999999999999997632      24578999999999999999999999999987442       


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCC
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN  516 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~p~~  516 (781)
                      ...++..+|.++...|++++|+.+|++++.+.+.      ...++.++|.++...|++++|+.++++++.     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            2457889999999999999999999999987432      245889999999999999999999999999     77878


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY  588 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~  588 (781)
                      ..++..+|.++...|++++|+.++++++...     +.....+..++.++...++   +.+|+.++++. ...|....++
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~  339 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence            8999999999999999999999999999984     3445567788888888888   88888888772 2334445678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhcc
Q 003991          589 HLRGLLLHGLGQHKKAIKDLSSGLGI  614 (781)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~  614 (781)
                      ..+|.++...|++++|+.+|+++++.
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.77  E-value=4.6e-18  Score=172.59  Aligned_cols=202  Identities=14%  Similarity=0.062  Sum_probs=129.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Q 003991          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKL-------  512 (781)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------  512 (781)
                      ...++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++..       
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            34455555555555555555555555555442        333455666666666666666666666666655       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 003991          513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---  580 (781)
Q Consensus       513 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  580 (781)
                       +|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             2444566677777777777777777777777766        5666677777777777777777777777777765   


Q ss_pred             ------CCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          581 ------DKRFSKAYHLRGLLLHGLGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       581 ------~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                            .+.....+..++......+.      +..+...++......|..+.++..+|.+|..+|++++|+.+|++++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  33444556666666655443      445555555555555666788999999999999999999999999875


Q ss_pred             c
Q 003991          649 E  649 (781)
Q Consensus       649 ~  649 (781)
                      .
T Consensus       282 ~  282 (283)
T 3edt_B          282 R  282 (283)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=1.2e-17  Score=161.06  Aligned_cols=185  Identities=19%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      +++.++..|..++..|++++|+..|+++++.+|+++.+++..+.     ...             ....+.....+|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHH
Confidence            46777888888888888888888888888888888888877210     000             000011222345555


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAE  537 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~  537 (781)
                      ...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+  ...+.
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555444332  22334


Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (781)
                      ..+.+++...|. ..+++.+|.++...|++++|+.+|++++.++|+
T Consensus       145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            444444322221 223444555555555555555555555555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.77  E-value=6.4e-19  Score=160.01  Aligned_cols=139  Identities=15%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (781)
                      ||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            34444444555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhhccCcHHHHHHHHH
Q 003991          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD-YDAALDLELDSMEKFVLQCL  661 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~  661 (781)
                      +|+..|+++++++|+++.+++.+|.+|...|++++|... ++++++++|+++.++..++.
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            555555555555555555555555555555554444333 34555555555554444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=1.6e-18  Score=157.29  Aligned_cols=139  Identities=12%  Similarity=-0.002  Sum_probs=54.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 003991          423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (781)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (781)
                      .++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence            33333344444444444443333333333334444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCcccHHHHHHHHHHH
Q 003991          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-HLKAIQLDRNFLEAWGHLTQFY  561 (781)
Q Consensus       503 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~  561 (781)
                      +..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            4444444444444444444444444333333333222 2333333333333333333333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.75  E-value=8.6e-17  Score=157.34  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWK  453 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  453 (781)
                      ++..++.+|..++..|++++|+..|+++++..|.+   ..+++.+|.++...|++++|+..|+++++.+|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            45667777777777788888888888777777765   357777777777777777777777777777776643   667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  519 (781)
                      .+|.++...+..                ....+..++..+...|++++|+..|+++++..|+++.+
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a  132 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT  132 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            777777655421                11123344455555566666666666666666665443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.75  E-value=6.2e-18  Score=171.61  Aligned_cols=224  Identities=14%  Similarity=0.078  Sum_probs=180.6

Q ss_pred             HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSAGEAWKRR  455 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l  455 (781)
                      ...|++++|+.+|+++++.        .|..+.++..+|.++...|++++|+.++++++...        |....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3467888888888888873        25567889999999999999999999999999873        5567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA  519 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~  519 (781)
                      |.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999988        4556788999999999999999999999999998        6666788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCC
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF  584 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~  584 (781)
                      +..+|.++...|++++|+.++++++...         +.....+..++..+...+.      +..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999999999999999873         3344566666666665443      334444444433344566


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      ..++..+|.++...|++++|+.+|+++++..
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7789999999999999999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.75  E-value=4.9e-17  Score=159.09  Aligned_cols=208  Identities=12%  Similarity=0.040  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 003991          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH  487 (781)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  487 (781)
                      .+..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++.+|+++   .+++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46788889999999999999999999999988876   46888999999999999999999999999998875   3788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS  567 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  567 (781)
                      .+|.++...+..                ....+..++..+...|++++|+..|+++++..|++..++..+..+....+. 
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-  145 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-  145 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence            888888776532                122344567777788899999999999999999886554332222111110 


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 003991          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~  644 (781)
                                      .......+|.++...|++++|+..|+++++..|+++   .+++.+|.++..+|++++|+..+++
T Consensus       146 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          146 ----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence                            122346789999999999999999999999999986   6899999999999999999999999


Q ss_pred             HHhhccCcHH
Q 003991          645 ALDLELDSME  654 (781)
Q Consensus       645 al~~~p~~~~  654 (781)
                      +....|++.+
T Consensus       210 l~~~~~~~~~  219 (225)
T 2yhc_A          210 IAANSSNTLE  219 (225)
T ss_dssp             HHHCCSCCCC
T ss_pred             HHhhCCCchh
Confidence            9999988643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=5.2e-16  Score=157.57  Aligned_cols=266  Identities=15%  Similarity=0.053  Sum_probs=176.5

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      .+.-.+++-.........+..++|+.++.+++..+|++..+|..++.++...| .+++++.++..++..+|++..+|...
T Consensus        50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44444455444455555566678999999999999999999999999999888 59999999999999999999999999


Q ss_pred             HHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          456 GQARAAL-G-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       456 a~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                      +.++... + ++++++..+.++++.+|.+..+|...+.++...+.++        ++++++.++++.+|.+..+|..++.
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~  209 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY  209 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9888887 7 8888888888888888888888888888888777766        7777777777777777777777777


Q ss_pred             HHHHcCC-------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 003991          526 ALSSIGE-------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHG  597 (781)
Q Consensus       526 ~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~  597 (781)
                      ++...+.       ++++++++.+++..+|++..+|+.+..++...|+...-  .+   ...-|.. +....        
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~~---~~~~~~~~~~~~~--------  276 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--IL---PAILPYTASKLNP--------  276 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--GH---HHHGGGTC-------------
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--cc---ccccccccccccc--------
Confidence            7776665       45555555555555555555555555555444432000  00   0000000 00000        


Q ss_pred             CCCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhccCcHHHHH
Q 003991          598 LGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAAL-DLELDSMEKFV  657 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~  657 (781)
                        ....-.......+..      .+..+.++..++.+|...|+.++|.++++... +.+|-....|.
T Consensus       277 --~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~  341 (349)
T 3q7a_A          277 --DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE  341 (349)
T ss_dssp             -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             --cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence              001111111111111      24567777888888888888888888888776 56776655443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=5.1e-16  Score=157.64  Aligned_cols=167  Identities=9%  Similarity=-0.001  Sum_probs=157.3

Q ss_pred             HHHHHHhhccCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHH
Q 003991          367 KFCVTRISKSKSISVDFRLSRGIAQVNEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R-ELEAAISDFTEAIQ  443 (781)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~  443 (781)
                      -.....++..+|.+..+|..++.++...| .+++++..++.++..+|.+..+|..++.++... + ++++++.++.+++.
T Consensus        74 L~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~  153 (349)
T 3q7a_A           74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL  153 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            34567788999999999999999999999 599999999999999999999999999999998 8 99999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHH
Q 003991          444 SNPSAGEAWKRRGQARAALGESV--------EAIQDLSKALEFEPNSADILHERGIVNFKFKD-------FNAAVEDLSA  508 (781)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~  508 (781)
                      .+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|...+.++...+.       ++++++++++
T Consensus       154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~  233 (349)
T 3q7a_A          154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK  233 (349)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            99999999999999999998887        99999999999999999999999999999987       7999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCH
Q 003991          509 CVKLDKENKSAYTYLGLALSSIGEY  533 (781)
Q Consensus       509 a~~~~p~~~~~~~~la~~~~~~g~~  533 (781)
                      ++..+|++..+|..+..++...|+.
T Consensus       234 aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          234 SIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999998887764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.72  E-value=6.7e-18  Score=175.07  Aligned_cols=261  Identities=15%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  471 (781)
                      ...|+.++|.+++++.     +++.+|..+|.++...|++++|++.|.++     .++..+...+..+...|++++|+.+
T Consensus        14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            4567788888888887     33468888888888888888888888764     4555777888888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Q 003991          472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (781)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  551 (781)
                      ++.+.+..+ ++.+...++.+|.+.|++.++.++++.     | +..+|..+|..+...|.|++|..+|.++        
T Consensus        84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------
T ss_pred             HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            888877543 366777888888888888888877752     3 3358888888888888888888888866        


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      ..|..+|.++.++|++++|++.++++     .++.+|...+.++...|+++.|..+... +..+   ++-...+..+|.+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek  219 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQD  219 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHH
Confidence            46778888888888888888888887     3678888888888888888888766654 2233   4445567788888


Q ss_pred             hCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCc
Q 003991          632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       632 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  691 (781)
                      .|++++|+.++++++.+++.+...+..++..+..     |..+++.+.+..|.....+.|
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k-----y~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK-----FKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT-----TCHHHHHHHHHHHSTTSCHHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHhcCcH
Confidence            8888888888888888888887766555444332     456667777777777766666

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=1.5e-16  Score=139.29  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHH
Q 003991          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (781)
Q Consensus       543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (781)
                      +..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            34578888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991          623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      +.+|.++..+|++++|+..|+++++++|++.+++..++
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            88888888888888888888888888888888655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.71  E-value=1.1e-16  Score=164.80  Aligned_cols=207  Identities=14%  Similarity=0.025  Sum_probs=118.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  472 (781)
                      .|++.+|..+++++.+..+..          ++. .+++++|..+|.++              |.+|...|++++|+.+|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence            455666666666665554431          111 35566666655554              34555556666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---
Q 003991          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---  549 (781)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---  549 (781)
                      .+++.+.+..              ++...              ...++..+|.+|..+|++++|+.+|++++.+.+.   
T Consensus        60 ~~al~~~~~~--------------~~~~~--------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~  111 (307)
T 2ifu_A           60 LQEAEAHANN--------------RSLFH--------------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT  111 (307)
T ss_dssp             HHHHHHHHHT--------------TCHHH--------------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHc--------------CCHHH--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            6665543211              00000              0223444455555555555555555555544321   


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--
Q 003991          550 ---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--  618 (781)
Q Consensus       550 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  618 (781)
                         ...++.++|.+|.. |++++|+.+|++++.+.+..      ..++..+|.++..+|++++|+.+|++++.+.|.+  
T Consensus       112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence               13455566666665 66666666666666554422      4556677777777777777777777777664432  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          619 ----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       619 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                          ..++..+|.++..+|++++|+.+|++++ ++|+...
T Consensus       191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence                2366777777777788888888888888 7776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.70  E-value=7.7e-17  Score=150.95  Aligned_cols=164  Identities=12%  Similarity=-0.003  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      .+.+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            345666777777777777777777777777777777777777777777777777777777777777 6555554444422


Q ss_pred             -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHHHH
Q 003991          563 -DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYREAI  639 (781)
Q Consensus       563 -~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~  639 (781)
                       ..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..+|.++..+|+.++|+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence             22333457888888888888888888888888888888888888888888888764  568888888888888888888


Q ss_pred             HHHHHHHh
Q 003991          640 KDYDAALD  647 (781)
Q Consensus       640 ~~~~~al~  647 (781)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.70  E-value=3.4e-17  Score=169.81  Aligned_cols=271  Identities=15%  Similarity=0.108  Sum_probs=144.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      .+..|..+|..+...|++++|++.|.++     .++..+...+.++...|++++|+.+++.+.+..++ +.+...++.+|
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y  104 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence            3579999999999999999999999764     45678999999999999999999999999885444 67788899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      .++|++.++...++.     | +...|..+|..+...|+|++|..+|.++        ..|..+|.++.++|++++|++.
T Consensus       105 ~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea  170 (449)
T 1b89_A          105 AKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG  170 (449)
T ss_dssp             ----CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH
Confidence            999999999888852     4 4469999999999999999999999976        4678899999999999999999


Q ss_pred             HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH
Q 003991          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (781)
                      ++++     .++.+|...+.++...|+++.|..+... +...   ++-...+..+|.+.|++++|+.++++++.+++.+.
T Consensus       171 ~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~  241 (449)
T 1b89_A          171 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHM  241 (449)
T ss_dssp             HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred             HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence            9999     4789999999999999999999877765 3244   44455788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhh
Q 003991          620 ECLYLRASCYHA--IGEYREAIKDYDAALDLEL-----DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (781)
Q Consensus       620 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  686 (781)
                      .++..+|.+|.+  .++..+.++.|...+.+.|     ++...|..+.       ..+..-++++.|+..+-..
T Consensus       242 ~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~-------~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          242 GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV-------FLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH-------HHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-------HHHHhhchHHHHHHHHHhC
Confidence            999999998865  4678888888888887777     6666454443       4444556777776655333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=4.7e-16  Score=136.10  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=89.1

Q ss_pred             ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (781)
                      ..+|..++.+..+|..++..|+|++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++..+++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            44566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (781)
Q Consensus       455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (781)
                      +|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777777777777777766655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.69  E-value=9.6e-17  Score=150.27  Aligned_cols=163  Identities=11%  Similarity=0.073  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      .+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            445666777777777777777777777777777777777777777777777777777777777777 6655544443322


Q ss_pred             -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 003991          461 -ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       461 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~  537 (781)
                       ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  ..++..++.++...|+.++|+
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence             22233345666666666666666666666666666666666666666666666554  346666666666666666666


Q ss_pred             HHHHHHH
Q 003991          538 EAHLKAI  544 (781)
Q Consensus       538 ~~~~~al  544 (781)
                      ..|++++
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.69  E-value=7.7e-16  Score=156.48  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=113.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Q 003991          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (781)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  559 (781)
                      |.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            55556666666666666666666666666666666666666666666666666666666666666666655555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHH
Q 003991          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYRE  637 (781)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~  637 (781)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++..+|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            56666666666777777777777777777777777777777777777777777777666  6667777777777777777


Q ss_pred             HHHHHHHHHh
Q 003991          638 AIKDYDAALD  647 (781)
Q Consensus       638 A~~~~~~al~  647 (781)
                      |...|++++.
T Consensus       274 a~~~~r~al~  283 (287)
T 3qou_A          274 LASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.69  E-value=9.7e-16  Score=157.62  Aligned_cols=182  Identities=19%  Similarity=0.123  Sum_probs=127.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHH
Q 003991          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVE  467 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  467 (781)
                      .+++++|+..|.++              |.+|...|++++|+.+|.+++.+.+..      ..++..+|.+|..+|++++
T Consensus        29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   94 (307)
T 2ifu_A           29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE   94 (307)
T ss_dssp             SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence            58899999998876              678889999999999999999875422      3466677777777777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (781)
                      |+.+|++++.+.+.              .|+...+              ..++..+|.+|.. |++++|+.+|++++.+.
T Consensus        95 A~~~~~~Al~l~~~--------------~g~~~~~--------------a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~  145 (307)
T 2ifu_A           95 AVQYIEKASVMYVE--------------NGTPDTA--------------AMALDRAGKLMEP-LDLSKAVHLYQQAAAVF  145 (307)
T ss_dssp             GHHHHHHHHHHHHT--------------TTCHHHH--------------HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------------cCCHHHH--------------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence            77777777765321              1111110              1234455555555 66666666666666554


Q ss_pred             ccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          548 RNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       548 ~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      |..      ..++.++|.++...|++++|+.+|++++.+.|.+      ..++..+|.++..+|++++|+.+|++++ .+
T Consensus       146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI  224 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred             HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence            432      4567777777777777777777777777765432      3467788888888899999999999999 88


Q ss_pred             CCCH
Q 003991          616 PSNI  619 (781)
Q Consensus       616 p~~~  619 (781)
                      |...
T Consensus       225 p~~~  228 (307)
T 2ifu_A          225 PGFS  228 (307)
T ss_dssp             TTST
T ss_pred             CCCC
Confidence            8643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=7.5e-17  Score=145.38  Aligned_cols=120  Identities=7%  Similarity=0.010  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      -.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.
T Consensus        19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            33445567788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      ++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.68  E-value=1.2e-15  Score=155.00  Aligned_cols=168  Identities=10%  Similarity=0.037  Sum_probs=147.1

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (781)
                      |.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            77788889999999999999999999999999999999999999999999999999999999998888877777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 003991          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKK  535 (781)
Q Consensus       458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~  535 (781)
                      .+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++  ..++..++.++...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            78888888888888888888888888888888888888888888888888888888887  7788888888888888888


Q ss_pred             HHHHHHHHHh
Q 003991          536 AEEAHLKAIQ  545 (781)
Q Consensus       536 A~~~~~~al~  545 (781)
                      |...|++++.
T Consensus       274 a~~~~r~al~  283 (287)
T 3qou_A          274 LASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.67  E-value=9.9e-16  Score=172.39  Aligned_cols=164  Identities=10%  Similarity=-0.018  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHhhccCCCCH
Q 003991          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL---GQHKKAIKDLSSGLGIDPSNI  619 (781)
Q Consensus       543 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~  619 (781)
                      +++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...   |++++|+..|+++++.+|.+.
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            55555555555555555555555555555555555555555555555555555555   555555555555555555544


Q ss_pred             HHHHHHH
Q 003991          620 ECLYLRA  626 (781)
Q Consensus       620 ~~~~~la  626 (781)
                      ..+..++
T Consensus       163 ~~~~~l~  169 (568)
T 2vsy_A          163 EPFAFLS  169 (568)
T ss_dssp             CHHHHTT
T ss_pred             ChHHHhC
Confidence            4444333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.66  E-value=1.5e-12  Score=145.99  Aligned_cols=223  Identities=10%  Similarity=-0.033  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (781)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  510 (781)
                      +.....|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+..+|..++.+....|++++|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 99999999999999999999999999999999999999998


Q ss_pred             HhC-----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcC-C
Q 003991          511 KLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLA-N  566 (781)
Q Consensus       511 ~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g-~  566 (781)
                      ...           |.           ...+|...+....+.|..+.|...|.+|++. .+....+|...+.+....+ +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           3457888888888899999999999999987 4445677777777777665 4


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD  643 (781)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~  643 (781)
                      ++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...|+   ...+|......-...|+.+.+...++
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998873   56788888888899999999999999


Q ss_pred             HHHhhccCcHH
Q 003991          644 AALDLELDSME  654 (781)
Q Consensus       644 ~al~~~p~~~~  654 (781)
                      ++.+..|+++.
T Consensus       566 R~~~~~P~~~~  576 (679)
T 4e6h_A          566 RFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHSTTCCH
T ss_pred             HHHHhCCCCcH
Confidence            99999999865

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.65  E-value=2e-15  Score=169.86  Aligned_cols=165  Identities=15%  Similarity=0.045  Sum_probs=137.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  473 (781)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCccc
Q 003991          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNF  550 (781)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~  550 (781)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...   |++++|+..++++++.+|..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999988


Q ss_pred             HHHHHHHH
Q 003991          551 LEAWGHLT  558 (781)
Q Consensus       551 ~~~~~~la  558 (781)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            77776666

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.65  E-value=8.7e-16  Score=136.01  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--------hh-----hhhhHHHHHHhhhCHHHHHHHHHHHHhc--
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------IQ-----DICNRAFCYSQLELHKHVIRDCDKALQL--   98 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~--------~~-----~~~~rA~~~~~~~~~~~A~~~~~~al~~--   98 (781)
                      ..+......++.+|..|+|++|+..|++||+++|+        ..     +++|+|.++.++|+|++|+..|++||++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46677778999999999999999999999999965        22     7999999999999999999999999999  


Q ss_pred             -----CCCchhHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991           99 -----DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (781)
Q Consensus        99 -----~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  150 (781)
                           +|+++++|    +++|.++..+|++++|+.+|++++++.|+.......+-.+....
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                 99999999    99999999999999999999999999988876655554444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.65  E-value=5.4e-16  Score=152.22  Aligned_cols=192  Identities=12%  Similarity=0.069  Sum_probs=157.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHER-------GIVNFKFKDFNAAVEDLSACVKLDKEN-----------------  516 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~p~~-----------------  516 (781)
                      ..+++..|...|.+++..+|...++|..+       +.++...++..+++..+.+.+.+.|..                 
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            35667777777777777777777777776       666666666677777777777655542                 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHH
Q 003991          517 ----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHL  590 (781)
Q Consensus       517 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~  590 (781)
                          ..+...++.++...|++++|.+.|..++...|.+. +.+.+|.+++..+++++|+..|+.+....+..  ..+++.
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence                34556688999999999999999999998899888 99999999999999999999999776643221  358999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhhccC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          591 RGLLLHGLGQHKKAIKDLSSGLGID--PS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      +|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            9999999999999999999998654  55 5679999999999999999999999999999998 65

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.64  E-value=7.5e-16  Score=151.17  Aligned_cols=207  Identities=14%  Similarity=0.071  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhCCCcH-----
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG-----  449 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~-----  449 (781)
                      ...+..|.-+ ..+++..|...|.+++..+|...++|..+       +.++...++..+++..+.+.+.+.|...     
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~   86 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA   86 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence            3445555554 57888888888888888888888888888       7777777777788888888777665432     


Q ss_pred             ----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 003991          450 ----------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (781)
Q Consensus       450 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  513 (781)
                                      ++...++.++...|++++|...|..++...|.+. ..+.+|.+++..++|++|+.+|+.+....
T Consensus        87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~  165 (282)
T 4f3v_A           87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP  165 (282)
T ss_dssp             CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred             cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence                            3344466667777777777777777766666666 66777777777777777777776554432


Q ss_pred             CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003991          514 KEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (781)
Q Consensus       514 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  588 (781)
                      +..  ..+++++|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++
T Consensus       166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            111  2356666777777777777777777666433  33 4556666677777777777777777777666666 5555


Q ss_pred             HHH
Q 003991          589 HLR  591 (781)
Q Consensus       589 ~~l  591 (781)
                      ..|
T Consensus       245 ~aL  247 (282)
T 4f3v_A          245 AAL  247 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.64  E-value=2e-12  Score=144.99  Aligned_cols=223  Identities=10%  Similarity=-0.038  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  544 (781)
                      ......|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+...|..++......|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44568899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hhC-----------cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCC-
Q 003991          545 QLD-----------RN-----------FLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQ-  600 (781)
Q Consensus       545 ~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-  600 (781)
                      ...           |.           ...+|...+.+..+.|+.+.|...|.++++. .+....+|...|.+....++ 
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           32           3567999999999999999999999999987 44556778777877777654 


Q ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHHHHHHhchh
Q 003991          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD---SMEKFVLQCLAFYQKEIALYTASKIN  677 (781)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (781)
                      ++.|..+|+++++..|+++..+...+......|+.+.|..+|++++...|+   ...       .+..-.......|..+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~-------lw~~~~~fE~~~G~~~  558 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKM-------IFQKVIFFESKVGSLN  558 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHH-------HHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHH-------HHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999999884   222       1222222234567888


Q ss_pred             hHHHHHhhhcCCCcccHH
Q 003991          678 SEFCWFDIDGDIDPLFKE  695 (781)
Q Consensus       678 ~A~~~~~~~~~~~p~~~~  695 (781)
                      .+....+++.+..|....
T Consensus       559 ~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          559 SVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHHHHhCCCCcH
Confidence            888888888877776433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=5.6e-17  Score=168.78  Aligned_cols=203  Identities=21%  Similarity=0.171  Sum_probs=144.1

Q ss_pred             HccCHHHHHHHHHH----HHHhCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          427 FQRELEAAISDFTE----AIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFEPNSADILHERG  490 (781)
Q Consensus       427 ~~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (781)
                      ..+.+++|+..+..    ++.+.|..  ++...|....            .++++++|+..+++++...|....++..+|
T Consensus        77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A           77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence            34578888888888    78888875  3433433321            233444455555555555554555555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Q 003991          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA  570 (781)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  570 (781)
                      .+++..|++++|+..|++++.+.|.+...            ..       .......|....++.++|.++...|++++|
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  215 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAA  215 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            55555555555555555555555443210            00       111122233378999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhc
Q 003991          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYDAALDLE  649 (781)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  649 (781)
                      +.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus       216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 55777776543


Q ss_pred             c
Q 003991          650 L  650 (781)
Q Consensus       650 p  650 (781)
                      +
T Consensus       296 ~  296 (336)
T 1p5q_A          296 A  296 (336)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.63  E-value=1.3e-15  Score=137.13  Aligned_cols=111  Identities=13%  Similarity=0.002  Sum_probs=54.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 003991          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (781)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~  518 (781)
                      ++++.++|++..+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+.+|++++.++|+++.
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  549 (781)
                      +++++|.++..+|++++|+..|++++++.|+
T Consensus       106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          106 PVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4444444444444444444444444444444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=2.8e-15  Score=135.35  Aligned_cols=120  Identities=21%  Similarity=0.135  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      +...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      |+++.+++.+|.+|..+|++++|+..|+++++++|+++..
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            9999999999999999999999999999999999988763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=3.3e-14  Score=137.26  Aligned_cols=141  Identities=18%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSACVKLDKENKSAYTYLG  524 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~la  524 (781)
                      +.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++..  +.++.+++.+|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            334444444444444444444444444332  233444444444433 3    34444444444422  23334444444


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003991          525 LALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (781)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (781)
                      .+|..    .+++++|+.+|+++.+..+  .++.+++.+|.+|..    .+++++|+.+|++++.. +.++.+++.+|.+
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~  171 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM  171 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence            44433    3344444444444443333  123344444444443    33344444444444333 2233333334433


Q ss_pred             H
Q 003991          595 L  595 (781)
Q Consensus       595 ~  595 (781)
                      |
T Consensus       172 y  172 (212)
T 3rjv_A          172 F  172 (212)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=1.6e-14  Score=139.44  Aligned_cols=178  Identities=13%  Similarity=0.035  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHL  541 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~  541 (781)
                      .+|+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578899999876  68999999999999999999999999999875  689999999999998 7    9999999999


Q ss_pred             HHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHh
Q 003991          542 KAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHG----LGQHKKAIKDLSSG  611 (781)
Q Consensus       542 ~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  611 (781)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++....+  .++.+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9965  5789999999999998    8999999999999999887  358999999999999    89999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhhccC
Q 003991          612 LGIDPSNIECLYLRASCYHAI-G-----EYREAIKDYDAALDLELD  651 (781)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~  651 (781)
                      ++. |.++.+++.+|.+|..- |     ++++|+.+|+++.+....
T Consensus       156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            998 67788999999999875 3     899999999999998643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.62  E-value=2.8e-15  Score=151.77  Aligned_cols=199  Identities=13%  Similarity=0.053  Sum_probs=143.1

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                      |.+...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777778888888888887777877778888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI  605 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  605 (781)
                      ++...|++++|+..|+++++.+|++...+........   ...++...........+.++.+...++.++  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            8888888888888888888777765322211111111   112223333333445667777777777655  58899999


Q ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhc
Q 003991          606 KDLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDLE  649 (781)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~  649 (781)
                      +.++++++.+|++......++.++... +.+++|...|.++.+..
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            999999999998888888888877776 67888999998887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=3.8e-15  Score=150.72  Aligned_cols=196  Identities=16%  Similarity=0.092  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      ++..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  573 (781)
                      ...|++++|+..|++++.++|++...+........   ...++...........+.+..+...++.++  .|++++|++.
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~  157 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEE  157 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence            44444444444444444444433111110111111   011112222222233444444444444433  4666666666


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHhhcc
Q 003991          574 LQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLGI  614 (781)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  614 (781)
                      ++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus       158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            6666666666665555555555554 5566677777666553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=1.2e-14  Score=127.27  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCch-------
Q 003991           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-------  103 (781)
Q Consensus        32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~-------  103 (781)
                      +...+...+..|+.+|..|+|++|+.+|++||+++ .++.+++++|.+|+++|+|++|+.+|+++|+++|++.       
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            44566778899999999999999999999999999 6677899999999999999999999999999998764       


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 003991          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  135 (781)
                      ++|+++|.++..+|++++|+..|+++|+..|+
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            58999999999999999999999999988775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.59  E-value=6.8e-14  Score=123.72  Aligned_cols=133  Identities=32%  Similarity=0.448  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (781)
                      ++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            56677777777788888888888887777777777778888888888888888888888888887788888888888888


Q ss_pred             CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      |++++|+..+++++...|.++.++..+|.++...|++++|..+++++++.+|+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            88888888888888888888888888888888888888888888888887775

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.59  E-value=2.5e-16  Score=163.87  Aligned_cols=152  Identities=17%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 003991          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGI  491 (781)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  491 (781)
                      .++++++|+..+++++...|....++..+|.++...|++++|+..|++++.+.|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666667777777777777777777777777776666               456666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-
Q 003991          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-  570 (781)
Q Consensus       492 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-  570 (781)
                      ++...|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666666666666 


Q ss_pred             HHHHHHHH
Q 003991          571 LECLQQVL  578 (781)
Q Consensus       571 ~~~~~~al  578 (781)
                      ...|++++
T Consensus       285 ~~~~~~~~  292 (336)
T 1p5q_A          285 KKLYANMF  292 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=1.5e-14  Score=129.76  Aligned_cols=120  Identities=17%  Similarity=0.124  Sum_probs=109.8

Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      ++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            9999999999999999999999999999999998876443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.59  E-value=2.1e-14  Score=132.23  Aligned_cols=120  Identities=15%  Similarity=0.088  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------c-cchhhhhhHHHHHHhhhCHHHHHHHH
Q 003991           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDC   92 (781)
Q Consensus        32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~------------------~-~~~~~~~~rA~~~~~~~~~~~A~~~~   92 (781)
                      ....+...+..|+.+|..|+|++|+..|+++|.+                  + .++.+++++|.|++++|+|++|+..|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3456777889999999999999999999999998                  4 34566999999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHHH
Q 003991           93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEELLT  151 (781)
Q Consensus        93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~  151 (781)
                      +++|+++|+++++|+++|.+|..+|++++|+..|++++++.|+.+ .....+..+.....
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 44555555554444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.57  E-value=9.2e-14  Score=138.19  Aligned_cols=255  Identities=9%  Similarity=-0.056  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      |+.++ -.+..+..|+|..++.-..   +..|.+ ....+.+.++|..+|++....        ..+....+...++..+
T Consensus        14 ~~~lf-~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~   81 (310)
T 3mv2_B           14 PMDYF-NIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL   81 (310)
T ss_dssp             -CCTH-HHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh
Confidence            34444 2455778899999998443   334433 356677888999999887421        1222223444444444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      .  ++   |+..+++.+...+.....+..+|.++...|++++|+.++.+.+..+|  .+.+++..++.++..+|+.+.|.
T Consensus        82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~  156 (310)
T 3mv2_B           82 D--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS  156 (310)
T ss_dssp             T--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             c--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence            2  22   88999998887666777788999999999999999999999999887  78899999999999999999999


Q ss_pred             HHHHHHHhhCcc----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003991          538 EAHLKAIQLDRN----FLEAWGHL--TQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (781)
Q Consensus       538 ~~~~~al~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (781)
                      +.++++.+.+|+    +..+...+  +++.+..|  ++.+|..+|+++....|+.......+. ++..+|++++|...++
T Consensus       157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHH
Confidence            999999999883    22333444  54466666  999999999999888886222222233 8999999999999999


Q ss_pred             Hhhcc----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          610 SGLGI----------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       610 ~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      .+++.          +|+++.++.+++.+...+|+  +|.++++++.+.+|+++-.
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            88876          48899999999999999998  8999999999999999863

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.57  E-value=2.4e-13  Score=120.10  Aligned_cols=133  Identities=31%  Similarity=0.443  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      +++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            34455555555566666666666555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~  515 (781)
                      |++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            55555555555555555555555555555555555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=5.9e-14  Score=155.46  Aligned_cols=188  Identities=12%  Similarity=0.063  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--
Q 003991          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--  565 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--  565 (781)
                      ..++|++.+.+++..+|++..+|...+.++...|+          +++++..+.++++.+|++..+|...+.++...+  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34677888888888888888888888888888887          899999999999999999999999999999999  


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh------------
Q 003991          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI------------  632 (781)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------  632 (781)
                      ++++++.+++++++.+|.+..+|..++.++...| .++++++++.++++.+|.+..+|..++.++..+            
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~  203 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence            7799999999999999999999999999999999 899999999999999999999999999999885            


Q ss_pred             --CCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhh------------HHHHHhhhcCCCcc
Q 003991          633 --GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINS------------EFCWFDIDGDIDPL  692 (781)
Q Consensus       633 --g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------A~~~~~~~~~~~p~  692 (781)
                        +.+++|++++.+++.++|++..+|.++..       .+...++.++            |+.+|.++..++|.
T Consensus       204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~-------ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          204 PENVLLKELELVQNAFFTDPNDQSAWFYHRW-------LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH-------HHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred             cHHHHHHHHHHHHHHHhhCCCCccHHHHHHH-------HHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence              66899999999999999999996665544       3444455444            56668888877765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.56  E-value=1e-14  Score=131.68  Aligned_cols=116  Identities=13%  Similarity=0.047  Sum_probs=73.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003991          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (781)
Q Consensus       505 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (781)
                      .|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (781)
                      +.+++.+|.++...|++++|+..|++++++.|+++.
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            666666666666666666666666666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=1.2e-14  Score=160.89  Aligned_cols=206  Identities=16%  Similarity=0.150  Sum_probs=136.7

Q ss_pred             HHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          392 VNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       392 ~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ...|.+ ++|+..+++++..+|++..+|..++.++...|+          +++++.++++++..+|++..+|...+.++.
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344444 567888888888888888888888888888776          666666666666666666666666666666


Q ss_pred             HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          461 ALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       461 ~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      ..+  ++++++..+.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++...+...++ 
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~-  197 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS-  197 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS-
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc-
Confidence            666  4466666666666666666666666665555555 555555555555555555555555555555443222100 


Q ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH------------HH
Q 003991          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AI  605 (781)
Q Consensus       538 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~  605 (781)
                               .+..          -...+.+++|++++.+++..+|++..+|+.++.++...+++++            |+
T Consensus       198 ---------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  258 (567)
T 1dce_A          198 ---------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLS  258 (567)
T ss_dssp             ---------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEE
T ss_pred             ---------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEE
Confidence                     0000          0001457899999999999999999999999999998888766            66


Q ss_pred             HHHHHhhccCCC
Q 003991          606 KDLSSGLGIDPS  617 (781)
Q Consensus       606 ~~~~~al~~~p~  617 (781)
                      ..|.+++.++|.
T Consensus       259 ~~f~~~i~~~~~  270 (567)
T 1dce_A          259 VCFSRPLTVGSR  270 (567)
T ss_dssp             EEEEEEECTTBT
T ss_pred             EEeccceecccc
Confidence            668888877765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=1.6e-13  Score=132.56  Aligned_cols=132  Identities=23%  Similarity=0.230  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (781)
                      .++.+|.++...|++++|+..|++++  .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            45667777777788888888777774  22 5677888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          599 GQHKKAIKDLSSGLGIDPSNI----------------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      |++++|+..|+++++..|.+.                .+++.+|.++..+|++++|+..|+++++++|++.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            888888888888888777655                9999999999999999999999999999999874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.1e-13  Score=119.41  Aligned_cols=113  Identities=19%  Similarity=0.163  Sum_probs=95.0

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (781)
Q Consensus       548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (781)
                      |.....+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhc------cCcHHHHHHHH
Q 003991          628 CYHAIGEYREAIKDYDAALDLE------LDSMEKFVLQC  660 (781)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~  660 (781)
                      ++..+|++++|+..|+++++++      |++..++..+.
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~  119 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY  119 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence            8888888888888888888888      77766554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=3e-13  Score=118.36  Aligned_cols=116  Identities=19%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      ..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34667777788888888888888888888888888888888888888888888888888888888888888788888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFE------PNSADILHERGIVNF  494 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~  494 (781)
                      +...|++++|+..|+++++++      |.+..++..++.+..
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            888888888888888888777      777777666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.52  E-value=3.1e-13  Score=124.58  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (781)
                      .+.....++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991          627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (781)
Q Consensus       627 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (781)
                      .+|..+|++++|+.+|+++++++|++..+++..++....
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999877666555433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.52  E-value=1.1e-13  Score=124.19  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 003991          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (781)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (781)
                      .+..++...|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34445566677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE  488 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  488 (781)
                      +.+++.+|.++...|++++|+..|++++.+.|.++.....
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence            7777777777777777777777777777777766554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.51  E-value=1.9e-13  Score=127.88  Aligned_cols=128  Identities=20%  Similarity=0.255  Sum_probs=104.8

Q ss_pred             HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCH--HHH
Q 003991          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQH--KKA  604 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A  604 (781)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4567788888888888888888888888888888888888888888888888888888888888888 7788888  888


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      +..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++...
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            888888888888888888888888888888888888888888888887653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.50  E-value=7.5e-13  Score=135.05  Aligned_cols=165  Identities=12%  Similarity=0.070  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HH
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LE  552 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~  552 (781)
                      .+...+..+...|++++|+..+.+++...+...      ..+..+|.++...|++++|+..+++++...+..      ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344455555556666666666666665554432      234456667777777777777777777654332      45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVL---YIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NI  619 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~  619 (781)
                      ++..+|.+|...|++++|+.+|++++   ...|++.    .+++++|.+|..+|++++|+.++++++.+.+.      .+
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            77778888888888888888888877   4445432    57788888888888888888888888876432      26


Q ss_pred             HHHHHHHHHHHHhCCHHHH-HHHHHHHHhhc
Q 003991          620 ECLYLRASCYHAIGEYREA-IKDYDAALDLE  649 (781)
Q Consensus       620 ~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  649 (781)
                      .+++.+|.+|..+|++++| ..+|++++.+.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            7888999999999999999 77788888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.50  E-value=2.7e-14  Score=136.37  Aligned_cols=88  Identities=23%  Similarity=0.248  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      .++.++|.++...|++++|+.++++++..+|.++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            55566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCHHHHH
Q 003991          632 IGEYREAI  639 (781)
Q Consensus       632 ~g~~~~A~  639 (781)
                      +++..++.
T Consensus       169 ~~~~~~~~  176 (198)
T 2fbn_A          169 LKEARKKD  176 (198)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            65555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.50  E-value=6.8e-13  Score=122.27  Aligned_cols=133  Identities=16%  Similarity=0.172  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (781)
                      +..+..+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HCCCHHHHHHHHHHhhccCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      ..|++++|+.+|++++..+|.+..++..+  +..+...|++++|+..+.++..+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            88888888888888888888888777444  444777888888888888776553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.50  E-value=1.6e-12  Score=132.53  Aligned_cols=161  Identities=9%  Similarity=-0.002  Sum_probs=76.9

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 003991          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADIL  486 (781)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  486 (781)
                      ...+..+...|++++|+..+.+++...+...      ..++.+|.++...|++++|+.++++++...+..      ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3344444444444444444444444433322      122334444444455555555555555433222      3344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHH
Q 003991          487 HERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEA  553 (781)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~  553 (781)
                      ..+|.+|...|++++|+.+|++++   ...|++.    .++.++|.+|..+|++++|+.++++++...+.      ...+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            555555555555555555555555   2233321    34555555555555555555555555554322      1445


Q ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 003991          554 WGHLTQFYQDLANSEKA-LECLQQVLY  579 (781)
Q Consensus       554 ~~~la~~~~~~g~~~~A-~~~~~~al~  579 (781)
                      ++++|.+|...|++++| ..++++++.
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            55555555555555555 444555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=1.7e-13  Score=128.22  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=113.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE  467 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~  467 (781)
                      +...|++++|+..++++++.+|.++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999 7888998  99


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  520 (781)
                      |+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+....
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999999999999999998875443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.49  E-value=1.4e-12  Score=120.17  Aligned_cols=131  Identities=19%  Similarity=0.181  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++.+++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVK  511 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~  511 (781)
                      ..|++++|+.+|++++..+|.+..++..++  ..+...|++++|+..+.++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            888888888888888888888877764443  346677777777777776654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=9.1e-13  Score=127.27  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ...++.+|..++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4457788999999999999999999885  33 67889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991          461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~  516 (781)
                      ..|++++|+..|++++...|.+.                .+++.+|.++...|++++|+..+++++...|++
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999999877765                788888888888888888888888888888875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.48  E-value=1.3e-13  Score=131.73  Aligned_cols=147  Identities=12%  Similarity=-0.048  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------------
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------------  585 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------  585 (781)
                      .....+......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            3344556666777888888777776666667778888888888888888888888888888888776             


Q ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          586 ---KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       586 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                         .++..+|.++...|++++|+.++++++..+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence               89999999999999999999999999999999999999999999999999999999999999999999866655554


Q ss_pred             HHH
Q 003991          663 FYQ  665 (781)
Q Consensus       663 ~~~  665 (781)
                      +..
T Consensus       166 ~~~  168 (198)
T 2fbn_A          166 VNK  168 (198)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.47  E-value=2.9e-12  Score=127.43  Aligned_cols=224  Identities=8%  Similarity=-0.067  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (781)
                      ...+.+.++++..|++....        ..+....+...++..+.  ++   |+..+++.+...+.....+..+|.++..
T Consensus        46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~  112 (310)
T 3mv2_B           46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAI  112 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45566677788888876421        12222334444444442  32   8888998887766667777899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--
Q 003991          462 LGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG--  531 (781)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g--  531 (781)
                      .|++++|+.++.+.+..+|  .+.+++..++.++...|+.+.|.+.++++.+.+|+      .......-+++....|  
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999887  77899999999999999999999999999999883      2233333355566666  


Q ss_pred             CHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHCC
Q 003991          532 EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       532 ~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g  599 (781)
                      ++.+|...|+++....|+  ....+.+   ++..+|++++|...++.+++.          +|+++.++.+++.+...+|
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            899999999999888886  3333333   899999999999999988776          4889999999988888899


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHH
Q 003991          600 QHKKAIKDLSSGLGIDPSNIECLY  623 (781)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~  623 (781)
                      +  +|.++++++.+.+|+++.+.-
T Consensus       270 k--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          270 L--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             h--HHHHHHHHHHHhCCCChHHHH
Confidence            7  899999999999999986543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.46  E-value=1.4e-12  Score=114.52  Aligned_cols=123  Identities=22%  Similarity=0.342  Sum_probs=94.1

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .|..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++.+++...|.+..++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            34456677777777888888888888888888777777777777787777777787777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (781)
                      .++...|++++|+.++++++...|.+..++..++.++...|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            7777777777777777777777777777777777777766653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.46  E-value=1e-12  Score=121.04  Aligned_cols=116  Identities=28%  Similarity=0.330  Sum_probs=97.9

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .+..+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (781)
                      .++...|++++|+.+|+++++++|++...+...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            888888888888888888888888887766655544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.46  E-value=4.9e-13  Score=118.37  Aligned_cols=105  Identities=13%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHHHCCCHHHHHHHHHHhhcc----
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FS-----KAYHLRGLLLHGLGQHKKAIKDLSSGLGI----  614 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~----  614 (781)
                      ...+..+|..++..|++++|+..|++++.++|+       +.     .+|.++|.++..+|++++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            344556666666666666666666666666665       33     38888888888888888888888888888    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          615 ---DPSNIECL----YLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       615 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                         +|+++.+|    +++|.++..+|++++|+..|+++++++|++...
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence               99999999    999999999999999999999999999988653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.45  E-value=1.2e-12  Score=133.39  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHH
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYH  589 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~  589 (781)
                      +|.++...|++++|+.++++++...+..      ..++..+|.+|...|++++|+.+|++++..       .+....+++
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            4555555555555555555555532221      234566666666666666666666666632       112244677


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhc
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIG-EYREAIKDYDAALDLE  649 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  649 (781)
                      ++|.+|..+|++++|+.++++++++.+..      +.+++.+|.+|..+| .+++|+.+|++|+.+.
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            88888888888888888888887764332      678999999999999 4699999999998764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=7.8e-13  Score=116.12  Aligned_cols=117  Identities=23%  Similarity=0.240  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      ..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (781)
                      .|++++|+.+|++++...|+++.++..+|.++..+|+
T Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            4444444444444444444444444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=2.2e-12  Score=113.75  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=77.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (781)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~  525 (781)
                      |.....++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++..+|.+..++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Q 003991          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (781)
Q Consensus       526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  565 (781)
                      ++...|++++|+.++++++..+|.+..++..++.++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=1.2e-12  Score=115.53  Aligned_cols=123  Identities=17%  Similarity=0.238  Sum_probs=101.7

Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      ..|..+..++.+|..++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.++++++..+|.+..++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            35666788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (781)
                      |.++...|++++|+.+|++++..+|.+..++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888887888888887776553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.44  E-value=3.3e-12  Score=130.24  Aligned_cols=159  Identities=11%  Similarity=0.006  Sum_probs=104.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYL  523 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l  523 (781)
                      +..+...|++++|...+++++...+..+.      .+..+|.++...+++++|+.++++++...+..      ..++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34445555555555555555554444332      22345666666667777777777776643322      2356777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 003991          524 GLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHL  590 (781)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  590 (781)
                      |.+|...|++++|+.+|+++++.       .+....++.++|.+|...|++++|+.++++++.+.+..      +.+++.
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            77777777777777777777742       22335577788888888888888888888887765432      677888


Q ss_pred             HHHHHHHCCC-HHHHHHHHHHhhcc
Q 003991          591 RGLLLHGLGQ-HKKAIKDLSSGLGI  614 (781)
Q Consensus       591 la~~~~~~g~-~~~A~~~~~~al~~  614 (781)
                      +|.++..+|+ +++|+.+|++++.+
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            8888888884 68888888888764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.44  E-value=4.2e-13  Score=117.47  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                      ..++..+|.++...|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++...+..++.+++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHHHHhchhhHHHHHhhhcCCCccc
Q 003991          665 QKEIALYTASKINSEFCWFDIDGDIDPLF  693 (781)
Q Consensus       665 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  693 (781)
                      .+|.++...+++++|+.+|.+++...|+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            99999999999999999999998877753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=8.3e-13  Score=114.37  Aligned_cols=102  Identities=18%  Similarity=0.026  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      .++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46778888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCcHH
Q 003991          633 GEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       633 g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      |++++|+..|+++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999998887653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.42  E-value=1.4e-13  Score=149.43  Aligned_cols=161  Identities=22%  Similarity=0.211  Sum_probs=124.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  540 (781)
                      .++++++|+..++.++...|.....+..+|..++..|++++|+..|++++.+.|.+....            .+      
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~------  307 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EK------  307 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HH------
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hH------
Confidence            455677777777777777777777788888888888888888888888887777653210            00      


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (781)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (781)
                       ...+..+....++.++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       308 -~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          308 -ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence             0112233446788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHH
Q 003991          621 CLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~  640 (781)
                      ++..++.++..+|++++|..
T Consensus       387 a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998887765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.42  E-value=7.8e-12  Score=108.56  Aligned_cols=112  Identities=29%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (781)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (781)
                      ++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      |++++|+.+|++++..+|+++.++..++.++.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44444444444444444444444444444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.42  E-value=5.6e-12  Score=111.95  Aligned_cols=106  Identities=16%  Similarity=0.222  Sum_probs=93.5

Q ss_pred             hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 003991          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (781)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (781)
                      ..|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45667888888899999999999999999999988898888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          626 ASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       626 a~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      |.++..+|++++|+..|+++++++|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999999998887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1e-11  Score=134.41  Aligned_cols=200  Identities=9%  Similarity=0.014  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ  443 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (781)
                      |...+..|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|.+++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677889999999999999999999999887642                 3688999999999999999999999988


Q ss_pred             hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991          444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (781)
Q Consensus       444 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  511 (781)
                      ..+...      .+...++.++...|+++.|+.++++++...+      ....++..+|.++...|++++|+..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            655432      3456678888888999999999999987643      2267889999999999999999999999987


Q ss_pred             hC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVL  578 (781)
Q Consensus       512 ~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (781)
                      ..      +....++..++.+|...|++++|..++++++...+..       ...+..+|.++...+++.+|..+|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            62      2336789999999999999999999999998764321       4567788999999999999999999998


Q ss_pred             hh
Q 003991          579 YI  580 (781)
Q Consensus       579 ~~  580 (781)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.40  E-value=1.4e-11  Score=106.92  Aligned_cols=109  Identities=32%  Similarity=0.451  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      .++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            33333444444444444444444444333333333333444443444444444444433333333333333333333333


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEFEPNSADILHERGI  491 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (781)
                      |++++|+.++++++...|.++.++..++.
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33333333333333333333333333333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.40  E-value=4.4e-12  Score=112.61  Aligned_cols=116  Identities=21%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .+.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPN-----SADILHERGIV  492 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~  492 (781)
                      .++...|++++|+..|++++...|+     +..+...+..+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~  125 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  125 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence            7777777777777777777776665     44444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.40  E-value=2.7e-12  Score=111.14  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      .++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 003991          463 GESVEAIQDLSKALEFEPNSA  483 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~~  483 (781)
                      |++++|+..++++++.+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999998888664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.39  E-value=2.8e-13  Score=147.15  Aligned_cols=144  Identities=16%  Similarity=0.173  Sum_probs=87.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHH
Q 003991          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---------------GEAWKRRGQA  458 (781)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~  458 (781)
                      .+++++|+..|+.+++..|..+.++..+|.+++..|+|++|+..|.+++.+.|.+               ..++.++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777777777777788888888888888888888888888877776               3455555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003991          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (781)
Q Consensus       459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  537 (781)
                      +..+|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=1.6e-11  Score=105.30  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            55677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      ..|++++|+..++++++.+|.++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777777777776666553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=1.1e-11  Score=106.39  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      +..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          631 AIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      ..|++++|...|+++++++|+++..+..+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            66666666666666666666666544433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.38  E-value=4e-12  Score=116.74  Aligned_cols=72  Identities=19%  Similarity=0.128  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      |....++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            333444444455555555555555555555555555555555555555555555555555555555555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.35  E-value=7.3e-12  Score=119.73  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=112.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcccHHHHHHHHHHHHHcCCH
Q 003991          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ------LDRNFLEAWGHLTQFYQDLANS  567 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~~  567 (781)
                      +..|++++|...++......+....++..+|.++...|++++|+.++++++.      ..+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            3456677777644443332224566777777777777777777777777777      3344567778888888888888


Q ss_pred             HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CC----HHHHHHHHHHHHHhCC
Q 003991          568 EKALECLQQVLYI---DKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGE  634 (781)
Q Consensus       568 ~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~  634 (781)
                      ++|+.++++++..   .+++    ..++..+|.++...|++++|+.++++++...+  .+    ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888888776   3322    45677888888888888888888888886532  22    2456889999999999


Q ss_pred             HHHHHHHHHHHHhhccCc
Q 003991          635 YREAIKDYDAALDLELDS  652 (781)
Q Consensus       635 ~~~A~~~~~~al~~~p~~  652 (781)
                      +++|..++++++++....
T Consensus       163 ~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          163 LLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999876543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.34  E-value=1.8e-11  Score=117.01  Aligned_cols=60  Identities=13%  Similarity=0.021  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLY  579 (781)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (781)
                      +..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3444444444444444444444444332110      12234444444444444444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.33  E-value=2.7e-11  Score=106.18  Aligned_cols=111  Identities=20%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRG  456 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la  456 (781)
                      .++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            456677777777777777777777777777776   677777777777777777777777777777777   67777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      .++...|++++|+..|++++...|+++.+......+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            7777777777777777777777777766555544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-11  Score=108.92  Aligned_cols=119  Identities=21%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (781)
                      .+..+..++.+|..++..|++++|+..|+++++.+|++   ..+++.+|.++...|++++|+.++++++..+|.+..+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            46678889999999999999999999999999999987   788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (781)
                      .+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999999999999999999999888888877776543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=4e-11  Score=107.84  Aligned_cols=117  Identities=22%  Similarity=0.220  Sum_probs=90.1

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (781)
Q Consensus       411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (781)
                      +|.+...++.+|..+...|++++|+.+|++++...|++   ..++..+|.++...|++++|+..+++++...|.++.+++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            46677778888888888888888888888888887776   677777777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (781)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  527 (781)
                      .+|.++...|++++|+.+|++++..+|++..++..++.+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7777777777777777777777777777777766666554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.32  E-value=3.2e-12  Score=132.76  Aligned_cols=157  Identities=16%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 003991          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (781)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  560 (781)
                      .....+..+|..++..|++++|+..|++++...|.+..        +...+++.++...+.         ..++.++|.+
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~  239 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence            34778999999999999999999999999999887541        233455555544332         2488999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH-HHHhCCHHHHH
Q 003991          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC-YHAIGEYREAI  639 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~  639 (781)
                      +...|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.+ ....+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 44567788899


Q ss_pred             HHHHHHHhhccCcHH
Q 003991          640 KDYDAALDLELDSME  654 (781)
Q Consensus       640 ~~~~~al~~~p~~~~  654 (781)
                      ..|.+++...|+++.
T Consensus       320 ~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          320 EMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHhhCCCCCCCC
Confidence            999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.31  E-value=5.9e-12  Score=107.06  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=67.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHHH
Q 003991          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL  624 (781)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  624 (781)
                      +|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+|+++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            34555556666666666666666666666666666666666666666666666666666666666666666  6666666


Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHhhccCc
Q 003991          625 RASCYHAI-GEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       625 la~~~~~~-g~~~~A~~~~~~al~~~p~~  652 (781)
                      +|.++... |++++|+.++++++...|++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            66666666 66666666666666666654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.30  E-value=3.7e-11  Score=126.06  Aligned_cols=123  Identities=19%  Similarity=0.278  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cc-cchhhhhhHHHHHHhhhCHHHHHHH
Q 003991           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA----------------QS-YEIQDICNRAFCYSQLELHKHVIRD   91 (781)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~----------------~~-~~~~~~~~rA~~~~~~~~~~~A~~~   91 (781)
                      .+.....+...+..++.++..|+|++|+..|+++++                ++ .++.++.++|.+++++|+|++|+..
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            444455566677888999999999999999999998                45 4566799999999999999999999


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 003991           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (781)
Q Consensus        92 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  151 (781)
                      |++||+++|+++++++++|.+|..+|++++|+..|++|+++.|+.+.....+..+.....
T Consensus       296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887766665555444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=3e-12  Score=139.45  Aligned_cols=138  Identities=16%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      ...+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44556677778888888888888888888888888888889999988999999999999999888888888899999999


Q ss_pred             HhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHh-----------hhcCCCccc
Q 003991          631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD-----------IDGDIDPLF  693 (781)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-----------~~~~~~p~~  693 (781)
                      .+|++++|+..|+++++++|++..++..++.+     ..+...+++++|+..+.           ++..++|.+
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~-----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH-----HHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999888888755444333     22556788888888888           677666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.30  E-value=5.8e-11  Score=104.00  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 003991          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG  490 (781)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la  490 (781)
                      +++.+|.++...|++++|+..|++++...|++.   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            355666677777777777777777777666665   566666777777777777777777766666666   66666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (781)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  527 (781)
                      .++...|++++|+..|++++...|+++.+...+..+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            6666666666666666666666666665544444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.29  E-value=3.4e-10  Score=122.45  Aligned_cols=200  Identities=11%  Similarity=0.053  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE  477 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  477 (781)
                      |.+.+..|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|+.++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44567788899999999999999999999887642                 3688999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003991          478 FEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (781)
Q Consensus       478 ~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  545 (781)
                      ..+..      ..+...++.++...|++++|+.++++++...+      ....++..+|.++...|++++|+..+.+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            76543      23566778888889999999999999987632      2367888999999999999999999999887


Q ss_pred             h------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       546 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      .      .+....++..+|.+|...|++++|..++++++...+   ..    ...+..+|.++...|++.+|..+|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5      334478899999999999999999999999987643   22    3457788999999999999999999998


Q ss_pred             cc
Q 003991          613 GI  614 (781)
Q Consensus       613 ~~  614 (781)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.28  E-value=1.1e-11  Score=109.52  Aligned_cols=53  Identities=23%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhccCcHH
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ++|+..|+++++++|++..+|+++|.+|..+           |++++|+.+|++|++++|++..
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            3555555555555555555555555555444           4677777777777777777764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=1.3e-12  Score=142.32  Aligned_cols=136  Identities=19%  Similarity=0.217  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+++++++++|++..+++.+|.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45566778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIV--NFKFKDFNAAVEDLS-----------ACVKLDKEN  516 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~a~~~~p~~  516 (781)
                      .+|++++|+..|+++++++|++..++..++.+  +...|++++|+..++           +++...|..
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999998888888888  888899999999999           777666654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.28  E-value=9.7e-12  Score=109.77  Aligned_cols=109  Identities=12%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS----------EKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      .+.+.+++|+..++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998875          599999999999999999999999999998


Q ss_pred             CC-----------CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          598 LG-----------QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       598 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      +|           ++++|+.+|++|++++|++.                     .|.+++++.+..++.++
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~  142 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHA  142 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccC
Confidence            75           89999999999999999974                     55666666666666443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.27  E-value=4.6e-11  Score=104.69  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW  452 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  452 (781)
                      .+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            356677777777777777777777777777777777777777777777777777777777777776655       6677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003991          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (781)
Q Consensus       453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (781)
                      ..+|.++...|++++|+.+|++++...| ++..+..++.+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            7777777777777777777777777766 4666666655544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.27  E-value=2.7e-11  Score=102.91  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 003991          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHL  590 (781)
Q Consensus       513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~  590 (781)
                      +|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            35555556666666666666666666666666666666666666666666666666666666666666666  6666666


Q ss_pred             HHHHHHHC-CCHHHHHHHHHHhhccCCCC
Q 003991          591 RGLLLHGL-GQHKKAIKDLSSGLGIDPSN  618 (781)
Q Consensus       591 la~~~~~~-g~~~~A~~~~~~al~~~p~~  618 (781)
                      +|.++... |++++|+.++++++...|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            66666666 66666666666666666553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.27  E-value=3e-11  Score=105.86  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=9.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          623 YLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       623 ~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      +.+|.++...|++++|+.+|++++++
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33333333333333333333333333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.27  E-value=5.4e-11  Score=124.78  Aligned_cols=140  Identities=17%  Similarity=0.188  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      ...+..+|..++..|++++|+..|+++++..+..+                  +...........|....++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888888888888888877543211                  111233444567777888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      ..|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.+
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888888888877765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.25  E-value=5.8e-12  Score=130.82  Aligned_cols=155  Identities=15%  Similarity=0.072  Sum_probs=90.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      .+..+..+|..++..|+|++|+..|++++...|.+..        +...|++.++...+.         ..+++++|.++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            3677889999999999999999999999999987542        223444455443332         23677888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEE  538 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~  538 (781)
                      ..+|++++|+.+|++++.++|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++..
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888877777 344566777778


Q ss_pred             HHHHHHhhCcccH
Q 003991          539 AHLKAIQLDRNFL  551 (781)
Q Consensus       539 ~~~~al~~~~~~~  551 (781)
                      .|.+++...|.++
T Consensus       321 ~~~~~l~~~p~~~  333 (338)
T 2if4_A          321 MYKGIFKGKDEGG  333 (338)
T ss_dssp             -------------
T ss_pred             HHHHhhCCCCCCC
Confidence            8888888777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.24  E-value=1.6e-11  Score=105.69  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 003991          564 LANSEKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       564 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      .|++++|+.+|++++..   +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            57788888888888888   577788888888888888888888888888888888888888889999999999999999


Q ss_pred             HHHHHHhhccCcHH
Q 003991          641 DYDAALDLELDSME  654 (781)
Q Consensus       641 ~~~~al~~~p~~~~  654 (781)
                      .|+++++..|+++.
T Consensus        83 ~~~~al~~~p~~~~   96 (117)
T 3k9i_A           83 LLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCCcHH
Confidence            99999988888876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.23  E-value=2e-08  Score=109.40  Aligned_cols=126  Identities=6%  Similarity=-0.146  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003991          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (781)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (781)
                      ..+|...+......+..+.|...|.++ ...+.....|...|.+....+ +.+.|...|+.+++..|+.+..+...+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            356777777777788899999999998 433335567777777766666 599999999999998898888888888888


Q ss_pred             HHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      ...|+.+.|...|+++.    .....|......-...|+.+.+...+++++.
T Consensus       365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88999999999999983    4578888888888888999999898888885

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=9e-11  Score=107.14  Aligned_cols=134  Identities=21%  Similarity=0.276  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------H
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S  585 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~  585 (781)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+..      .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            345556666666666666666666666554332      2466667777777777777777777776654322      4


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                      .++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.++++++++...
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            56777788888888888888888877765321      2457788899999999999999999988887554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.22  E-value=1.7e-11  Score=105.45  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46677777777777777   466777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhccCCCCHHHHH
Q 003991          607 DLSSGLGIDPSNIECLY  623 (781)
Q Consensus       607 ~~~~al~~~p~~~~~~~  623 (781)
                      .|++++...|+++.+..
T Consensus        83 ~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhCCCcHHHHH
Confidence            77777777777765543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.19  E-value=3.5e-08  Score=107.45  Aligned_cols=306  Identities=10%  Similarity=-0.087  Sum_probs=164.1

Q ss_pred             hHHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HccCHHHHHH
Q 003991          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKE---DPMYPEALIGRGTARA----FQRELEAAIS  436 (781)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~----~~g~~~~A~~  436 (781)
                      .....+.+.+...| +++.|..........++ .+.....|+.++..   +|.+...|......+.    ..++.+.+..
T Consensus        32 ~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~  110 (493)
T 2uy1_A           32 SLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN  110 (493)
T ss_dssp             HHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence            33344555555555 66666666665555553 34455666666653   5566666666655543    2455666777


Q ss_pred             HHHHHHHhCCCcHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc--CC-
Q 003991          437 DFTEAIQSNPSAGE-AWKRRGQAR-------------AALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKF--KD-  498 (781)
Q Consensus       437 ~~~~al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--~~-  498 (781)
                      .|++++..-+.+.. .|......-             .....+..|...++.+....+. +...|..+...-...  +- 
T Consensus       111 iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~  190 (493)
T 2uy1_A          111 GYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG  190 (493)
T ss_dssp             HHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCC
T ss_pred             HHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCc
Confidence            77777764222221 111111100             0111222333333333332221 223343333322211  00 


Q ss_pred             ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          499 ----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       499 ----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                          .......|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...|...+... ..+   +.   +
T Consensus       191 ~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~  262 (493)
T 2uy1_A          191 GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---Y  262 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---H
T ss_pred             chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---H
Confidence                334566777777777777777777777777777777888888887777 77665555444331 111   11   1


Q ss_pred             HHHHhh-------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHH
Q 003991          575 QQVLYI-------------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIK  640 (781)
Q Consensus       575 ~~al~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~  640 (781)
                      +++...             .+....+|...+....+.+..+.|...|.++ ...+....+|...|.+....| +.+.|..
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~  341 (493)
T 2uy1_A          263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYN  341 (493)
T ss_dssp             HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHH
Confidence            111110             0111345666666666677788888888888 433335566766676666666 4888888


Q ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhc
Q 003991          641 DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (781)
Q Consensus       641 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  687 (781)
                      .|+.+++..|++++.|...       +......|..+.|...|.++.
T Consensus       342 ife~al~~~~~~~~~~~~y-------id~e~~~~~~~~aR~l~er~~  381 (493)
T 2uy1_A          342 IFSSGLLKHPDSTLLKEEF-------FLFLLRIGDEENARALFKRLE  381 (493)
T ss_dssp             HHHHHHHHCTTCHHHHHHH-------HHHHHHHTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHH
Confidence            8888888888777643321       112234566666666666653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.15  E-value=3.4e-10  Score=103.22  Aligned_cols=96  Identities=22%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHH
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLE  552 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~  552 (781)
                      ++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++...+.      ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            33344444444444444444444444332211      233444444455555555555555444443211      133


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYI  580 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (781)
                      ++..+|.++...|++++|+.++++++.+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4444444555555555555555444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.1e-09  Score=92.64  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  664 (781)
                      ..++..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..... ...+++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~   82 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-RSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-HHHHHH
Confidence            5678888999999999999999999999999999999999999999999999999999999999998732222 344677


Q ss_pred             HHHHHHHHHhchhhHHHHHhh
Q 003991          665 QKEIALYTASKINSEFCWFDI  685 (781)
Q Consensus       665 ~~~~~~~~~~~~~~A~~~~~~  685 (781)
                      ..|.++...++++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            777777788888877776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.5e-10  Score=96.80  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL  624 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  624 (781)
                      ...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45677777777777777777777777777777777777777777777777777777777777777777      777777


Q ss_pred             HHHHHHHhCCHHHHHHHHHH
Q 003991          625 RASCYHAIGEYREAIKDYDA  644 (781)
Q Consensus       625 la~~~~~~g~~~~A~~~~~~  644 (781)
                      +|.++..+|++++|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            77777777777666655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=3.7e-09  Score=90.29  Aligned_cols=85  Identities=15%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 003991          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (781)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  648 (781)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCcH
Q 003991          649 ELDSM  653 (781)
Q Consensus       649 ~p~~~  653 (781)
                      .|+..
T Consensus        83 ~~~~~   87 (115)
T 2kat_A           83 AQSRG   87 (115)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            88654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.97  E-value=5.6e-09  Score=84.58  Aligned_cols=82  Identities=24%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      ..++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hh
Q 003991          631 AI  632 (781)
Q Consensus       631 ~~  632 (781)
                      .+
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.95  E-value=4.9e-09  Score=89.48  Aligned_cols=81  Identities=22%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       536 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++...
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45555555555565555666666666666666666666666666666656666666666666666666666666665554


Q ss_pred             C
Q 003991          616 P  616 (781)
Q Consensus       616 p  616 (781)
                      |
T Consensus        84 ~   84 (115)
T 2kat_A           84 Q   84 (115)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.94  E-value=1.1e-08  Score=82.93  Aligned_cols=84  Identities=27%  Similarity=0.366  Sum_probs=58.5

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (781)
                      ..+..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+.++++++..+|.+..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34566666777777777777777777777777777777777777777777777777777777777777777777666666


Q ss_pred             HHHc
Q 003991          459 RAAL  462 (781)
Q Consensus       459 ~~~~  462 (781)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.86  E-value=9.5e-09  Score=85.08  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=63.0

Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|+..+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            368888888899999999999999999999999999988889999999999999999999999999888776544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=4.9e-09  Score=86.63  Aligned_cols=89  Identities=19%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (781)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (781)
                      ..|.++...|++++|+..|++++..+|+++. +++.+|.++...|++++|+..|+++++.+|+++.++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4555555666666666666666666666665 66666666666666666666666666666665555432        44


Q ss_pred             HHHHHHHHHHHHhhccCc
Q 003991          635 YREAIKDYDAALDLELDS  652 (781)
Q Consensus       635 ~~~A~~~~~~al~~~p~~  652 (781)
                      +.+++..|+++...+|++
T Consensus        77 ~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHhccCccc
Confidence            555666666666555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.82  E-value=9.5e-09  Score=84.90  Aligned_cols=90  Identities=19%  Similarity=0.283  Sum_probs=78.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 003991          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE  667 (781)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  667 (781)
                      +.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+.+|+++++++|++..++..         
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence            56789999999999999999999999999999 99999999999999999999999999999999885532         


Q ss_pred             HHHHHHhchhhHHHHHhhhcCCCccc
Q 003991          668 IALYTASKINSEFCWFDIDGDIDPLF  693 (781)
Q Consensus       668 ~~~~~~~~~~~A~~~~~~~~~~~p~~  693 (781)
                            +.+.+++.+|.++...+|+.
T Consensus        75 ------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 ------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             ------HHHHHHHHHHCCTTHHHHCC
T ss_pred             ------HHHHHHHHHHHHHhccCccc
Confidence                  55667777777776666543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=1e-07  Score=84.18  Aligned_cols=16  Identities=19%  Similarity=0.445  Sum_probs=6.2

Q ss_pred             hCCHHHHHHHHHHHHh
Q 003991          632 IGEYREAIKDYDAALD  647 (781)
Q Consensus       632 ~g~~~~A~~~~~~al~  647 (781)
                      .+++++|+.+|+++.+
T Consensus       110 ~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          110 VKNEKQAVKTFEKACR  125 (138)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            3333333333333333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.79  E-value=5.9e-08  Score=98.05  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=112.5

Q ss_pred             HHHHHhCCCCHHHH--HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003991          473 SKALEFEPNSADIL--HERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (781)
Q Consensus       473 ~~al~~~p~~~~~~--~~la~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  547 (781)
                      +++....|.+..+|  +..|..+...+   ...+|+.+|+++++++|+++.++..++.++...           ..  ..
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~~--~~  250 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------HS--QH  250 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HH--HS
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hc--cC
Confidence            34555567665543  34455555443   457888888999999998888888887777610           00  11


Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 003991          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (781)
Q Consensus       548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (781)
                      +........          ...+... ..++...|..+.++..++..+...|++++|+..+++++.++|+ ...+..+|.
T Consensus       251 ~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~  318 (372)
T 3ly7_A          251 PLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGK  318 (372)
T ss_dssp             CCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             CCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            111110000          1222221 1234667899999999999998889999999999999999975 778889999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          628 CYHAIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      ++...|++++|++.|++|+.++|..+..
T Consensus       319 ~~~~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          319 VYEMKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence            9999999999999999999999988653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=2.1e-07  Score=82.07  Aligned_cols=16  Identities=19%  Similarity=0.324  Sum_probs=6.3

Q ss_pred             CCCHHHHHHHHHHhhc
Q 003991          598 LGQHKKAIKDLSSGLG  613 (781)
Q Consensus       598 ~g~~~~A~~~~~~al~  613 (781)
                      .+++++|+.+|+++.+
T Consensus       110 ~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          110 VKNEKQAVKTFEKACR  125 (138)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            3334444444443333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.75  E-value=4.4e-07  Score=87.60  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=92.4

Q ss_pred             hhCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHC-----CCHHHHHH
Q 003991          545 QLDRNFLEAWGHLTQFYQD---L--A------NSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGL-----GQHKKAIK  606 (781)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~  606 (781)
                      +.+|+++++++..|.+...   .  |      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            4568888887777766543   1  2      357889999999999998  567999999999995     99999999


Q ss_pred             HHHHhhccCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhccCc
Q 003991          607 DLSSGLGIDPSN-IECLYLRASCYHA-IGEYREAIKDYDAALDLELDS  652 (781)
Q Consensus       607 ~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~  652 (781)
                      +|+++++++|+. ...++.+|..+.. .|++++|..++++++..+|..
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999999975 9999999999988 499999999999999998874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.75  E-value=4.5e-08  Score=80.97  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Q 003991          479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (781)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  548 (781)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            3455555555555555555555555555555555555555555555555555555555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.72  E-value=3.1e-07  Score=92.84  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (781)
                      .+..++.+|..++..++   +.+|+.+|+++++.+|+++.++..++.+|.....+             .|.......   
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~---  258 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLA---  258 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHH---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHH---
Confidence            44555677777776654   47888999999999999888888888877621100             011110000   


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  536 (781)
                             ....+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|
T Consensus       259 -------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA  329 (372)
T 3ly7_A          259 -------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA  329 (372)
T ss_dssp             -------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred             -------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence                   00111110 1122344555555555555555555666666666666555542 44555555555566666666


Q ss_pred             HHHHHHHHhhCcccH
Q 003991          537 EEAHLKAIQLDRNFL  551 (781)
Q Consensus       537 ~~~~~~al~~~~~~~  551 (781)
                      ++.|.+|+.++|...
T Consensus       330 ~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          330 ADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHhcCCCcC
Confidence            666666666655543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.72  E-value=6.2e-08  Score=104.46  Aligned_cols=123  Identities=14%  Similarity=0.096  Sum_probs=79.9

Q ss_pred             HHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHH
Q 003991          527 LSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS---KAYHL  590 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~  590 (781)
                      +..+|++++|+..+++++++        +|.....+.++|.+|..+|+|++|+.++++++.+     .|+++   ..+.+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            33455555555555555543        2233455666666666666666666666666643     33443   45677


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhhcc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          591 RGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +|.+|..+|++++|+.+|++++++     .|+++   .....++.++..+|.+++|...|.++.+..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777754     45554   455678888888888888888888876543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.71  E-value=4.9e-07  Score=87.34  Aligned_cols=106  Identities=18%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             hCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 003991          512 LDKENKSAYTYLGLALSS-----IG------EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALEC  573 (781)
Q Consensus       512 ~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~  573 (781)
                      .+|++++++++.|.+...     .|      ....|...++++++++|+  +..+|..+|.+|...     |+.++|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            356666666665555432     12      256778888888888887  466888888888874     888888888


Q ss_pred             HHHHHhhCCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHhhccCCC
Q 003991          574 LQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       574 ~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~  617 (781)
                      |++++.++|+. ..+++.+|..+.. .|++++|..++++++...|.
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            88888888864 8888888888777 48888888888888887665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.67  E-value=1.1e-07  Score=102.66  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=80.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---
Q 003991          385 LSRGIAQVNEGKYASAISIFDQILKE-----DPMYP---EALIGRGTARAFQRELEAAISDFTEAIQS-----NPSA---  448 (781)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---  448 (781)
                      +..+..+..+|+|++|+.+++++++.     .|+++   .++.++|.+|..+|+|++|+.++++++.+     .|++   
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455566778888888888888764     23343   45677777777777777777777777764     3333   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVK  511 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~  511 (781)
                      ...+.++|.+|..+|++++|+.+|++++.+     .|+++   .....++.++..++.+++|...|.++.+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777777777777654     34443   2344555555556666666666655543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=9.9e-07  Score=76.81  Aligned_cols=93  Identities=16%  Similarity=0.016  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 003991          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD  641 (781)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  641 (781)
                      ...+.+.|.+.+..++.+..+.+.+|+++.+.+   +.++++..++..++.+ | ++.++++++|..++++|+|++|.++
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456677788888888888999999999999988   6679999999999988 6 5688999999999999999999999


Q ss_pred             HHHHHhhccCcHHHHHHH
Q 003991          642 YDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       642 ~~~al~~~p~~~~~~~~~  659 (781)
                      ++++++++|++..+....
T Consensus        94 ~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHH
Confidence            999999999998755443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.43  E-value=1.2e-06  Score=70.67  Aligned_cols=73  Identities=19%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          581 DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      +|+++..+..+|.++...++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            57778888888888765555   68888888888888888888888888888888888888888888888887743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.41  E-value=1.5e-06  Score=70.07  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             CCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 003991          377 KSISVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (781)
                      .|.+++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45566666666666654444   566666666666666666666666666666666666666666666666665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.37  E-value=3.7e-06  Score=89.07  Aligned_cols=95  Identities=7%  Similarity=0.018  Sum_probs=79.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcc-----cc-hhh---hhhHHHHHHhhhCHHHHHHHHHHHHhc--------CCCchhHHH
Q 003991           45 KLCSLRNWSKAIRILDSLLAQS-----YE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQL--------DPTLLQAYI  107 (781)
Q Consensus        45 ~~~~~g~~~~A~~~y~~ai~~~-----~~-~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~  107 (781)
                      +.-..|+|++|+..|.+++++.     ++ |..   +.|+|.+|..+|+|++|+..++++|++        +|+-+..++
T Consensus       307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  386 (433)
T 3qww_A          307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL  386 (433)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            3345689999999999999863     33 322   789999999999999999999999987        356677999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 003991          108 LKGCAFSALGRKEEALSVWEKGYEH-----ALHQSAD  139 (781)
Q Consensus       108 ~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~  139 (781)
                      ++|.+|..+|++++|+..|++|+++     .|++|..
T Consensus       387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          387 KLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999999875     5666643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.36  E-value=6.3e-06  Score=71.73  Aligned_cols=91  Identities=14%  Similarity=0.010  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-c-ccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       500 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      ..+.+.|.+.+..++.+..+.+.+|+++.+.+   +.++++..++..++.+ | ...++++++|..+++.|+|++|.+++
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            34445555555555555666666666666655   4446666666666655 4 34556666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHH
Q 003991          575 QQVLYIDKRFSKAYHL  590 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~  590 (781)
                      +++++..|++..+...
T Consensus        95 ~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHhcCCCCHHHHHH
Confidence            6666666665555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.35  E-value=5.9e-06  Score=87.73  Aligned_cols=100  Identities=10%  Similarity=0.073  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-----cc-hhh---hhhHHHHHHhhhCHHHHHHHHHHHHhcC--------CCch
Q 003991           41 IELAKLCSLRNWSKAIRILDSLLAQS-----YE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLL  103 (781)
Q Consensus        41 ~~~~~~~~~g~~~~A~~~y~~ai~~~-----~~-~~~---~~~rA~~~~~~~~~~~A~~~~~~al~~~--------p~~~  103 (781)
                      ..+.++..+|+|++|+..|.+++++.     ++ |..   +.|.|.+|..+|+|++|+..++++|.+.        |.-+
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            44567889999999999999999763     22 222   7899999999999999999999999773        5556


Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHHH
Q 003991          104 QAYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSADL  140 (781)
Q Consensus       104 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~  140 (781)
                      ..++.+|.+|..+|++++|+..|++|+++     .|++|...
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            69999999999999999999999999975     67777553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.27  E-value=6.4e-06  Score=68.23  Aligned_cols=76  Identities=9%  Similarity=-0.063  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      +.-++.+|..++..|+|..|+.+|+.|++..       +..+.++..+|.++.++|+++.|+.+++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4456677777777777777777777777642       334678888888888888888888888888888888877654


Q ss_pred             HHH
Q 003991          658 LQC  660 (781)
Q Consensus       658 ~~~  660 (781)
                      ++.
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.26  E-value=1e-05  Score=67.04  Aligned_cols=78  Identities=15%  Similarity=0.050  Sum_probs=53.9

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (781)
                      .++...+.+|..++..|+|..|+..|+++++..       +..+.++..+|.++..+|+++.|+.++++++.+.|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            346667777777888888888888887777642       2345666677777777777777777777777777777666


Q ss_pred             HHHHH
Q 003991          452 WKRRG  456 (781)
Q Consensus       452 ~~~la  456 (781)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            55554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.14  E-value=0.00049  Score=74.67  Aligned_cols=115  Identities=10%  Similarity=-0.022  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003991          533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (781)
Q Consensus       533 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (781)
                      .++|.+.|.+..... +-+...|..+...|.+.|+.++|..+|++..... ..+...|..+-..|.+.|+.++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            455555555554432 1234555566666666666666666666655431 22355566666666666666666666666


Q ss_pred             hhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          611 GLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       611 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      ..+..- .+...|..+-..|.+.|+.++|.+++++..+
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            654321 1355666666666666666666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.09  E-value=2.1e-05  Score=83.25  Aligned_cols=87  Identities=11%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             HHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKE-----DPMYP---EALIGRGTARAFQRELEAAISDFTEAIQS-----NPSA---GEAWKRR  455 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l  455 (781)
                      ...|+|++|+..+++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++.+     .|++   ...+.++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3457778888888777764     34443   45667777777777777777777777753     3333   3456677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 003991          456 GQARAALGESVEAIQDLSKALEF  478 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~  478 (781)
                      |.+|..+|++++|+.+|++++++
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHH
Confidence            77777777777777777777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.03  E-value=2e-05  Score=83.62  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS---KAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      ..+.++|.+|..+|++++|+.++++++.+     .|+++   ..++++|.+|..+|++++|+.+|+++++
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34444455555555555555555544432     22222   2344555555555555555555555544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.98  E-value=0.00078  Score=73.08  Aligned_cols=162  Identities=10%  Similarity=0.040  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCC-CCHHHH
Q 003991          418 LIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGE---------SVEAIQDLSKALEFEP-NSADIL  486 (781)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~~~  486 (781)
                      +..+-..+.+.|+.++|+..|+++.... +-+...|..+-.++...+.         .+.|...|+++....- -+...+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            4455567777888888888888877643 2234455555555544332         5677777777765431 256677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Q 003991          487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDL  564 (781)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~  564 (781)
                      ..+...+.+.|++++|...+++..... .-+...|..+-..|.+.|+.++|.+.|.+..+.. .-+...|..+...+.+.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            777777777888888888887776653 2356667777777777788888888777776643 22456677777777777


Q ss_pred             CCHHHHHHHHHHHHh
Q 003991          565 ANSEKALECLQQVLY  579 (781)
Q Consensus       565 g~~~~A~~~~~~al~  579 (781)
                      |+.++|..++++.-+
T Consensus       189 g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          189 KNADKVYKTLQRLRD  203 (501)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888777777654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.95  E-value=9.6e-05  Score=61.75  Aligned_cols=96  Identities=16%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHhhccC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 003991          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK---AIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIK  640 (781)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~  640 (781)
                      ....+...|.+....++....+.+.+|+++.+..+...   ++..++..+... | ..-+.++.+|..++++|+|++|..
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34556667777777777888999999999988887766   888898888876 4 456789999999999999999999


Q ss_pred             HHHHHHhhccCcHHHHHHHHH
Q 003991          641 DYDAALDLELDSMEKFVLQCL  661 (781)
Q Consensus       641 ~~~~al~~~p~~~~~~~~~~~  661 (781)
                      +++.+++..|++..+..+...
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999886655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.76  E-value=0.00053  Score=58.39  Aligned_cols=53  Identities=15%  Similarity=0.048  Sum_probs=24.0

Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      ++.++|...|+.++......+.+|...|..-.++|+...|...+.+++...|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            44444444444444444444444444444444444444444444444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.73  E-value=0.00058  Score=57.04  Aligned_cols=88  Identities=13%  Similarity=-0.028  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-c-ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---AEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       502 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      +...|.+....++....+.+.+|+++....+...   ++.+++..+... | .....++.+|..+++.|+|++|..+++.
T Consensus        20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344444444444444555555555554444333   444555444443 3 2344455555555555555555555555


Q ss_pred             HHhhCCCCHHHHH
Q 003991          577 VLYIDKRFSKAYH  589 (781)
Q Consensus       577 al~~~~~~~~~~~  589 (781)
                      +++..|++..+..
T Consensus       100 lL~~eP~n~QA~~  112 (126)
T 1nzn_A          100 LLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHCTTCHHHHH
T ss_pred             HHHhCCCCHHHHH
Confidence            5555555544433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.68  E-value=0.00075  Score=57.47  Aligned_cols=109  Identities=14%  Similarity=-0.017  Sum_probs=70.5

Q ss_pred             hCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          478 FEPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKA  543 (781)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (781)
                      +.|++++.|..........|+.      ++-++.|++++..-|..        ...|...|.. ...++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3455566666665555555555      55556666666554432        2344444533 4457777888888888


Q ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003991          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (781)
Q Consensus       544 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (781)
                      +......+.+|...|....++|+...|.+.+.+++...|.....
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            77766677778888888888888888888888888877765443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.47  E-value=0.00056  Score=59.78  Aligned_cols=93  Identities=11%  Similarity=0.065  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchh---------hhhhHHHHHHhhhCHHHHHHHHHHHHhcC---CC--
Q 003991           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT--  101 (781)
Q Consensus        37 ~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~---------~~~~rA~~~~~~~~~~~A~~~~~~al~~~---p~--  101 (781)
                      +..+..+.+++..|.|+.|+-.++.++.+. .++.         .++..|.+++..|+|..|...|++||.+.   |+  
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            445677788999999999999999988876 3333         47899999999999999999999987664   11  


Q ss_pred             --------------------chhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003991          102 --------------------LLQAYILKGCAFSALGRKEEALSVWEKG  129 (781)
Q Consensus       102 --------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a  129 (781)
                                          ..+..|+++.||.++|++++|+..++.+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                                1268899999999999999999877664

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.37  E-value=0.0012  Score=57.62  Aligned_cols=134  Identities=12%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCc
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN---PSA  448 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~  448 (781)
                      -..++.....++..|.|+.|+-....++...   |+-      ..++..+|.+++..++|..|...|+++++..   +..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456777888999999999999998876643   331      3478899999999999999999999998753   222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (781)
Q Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  527 (781)
                      ......++.    ...+..       ... .+.+.++.+.++.|+...+++++|+..++..-. ....+.+...||..|
T Consensus       100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            211100100    000000       011 133567788888888888888888887765321 223566666666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.06  E-value=0.011  Score=50.07  Aligned_cols=79  Identities=19%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          582 KRFSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      .-.+.+.+++|+++.+..+.   .+++..++..+...|. .-+.++.+|..+.++|+|++|.++.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688889999999887755   4688889888888874 4678999999999999999999999999999999987654


Q ss_pred             HHH
Q 003991          658 LQC  660 (781)
Q Consensus       658 ~~~  660 (781)
                      +..
T Consensus       116 Lk~  118 (144)
T 1y8m_A          116 LKS  118 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.97  E-value=0.0061  Score=50.97  Aligned_cols=79  Identities=19%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHCCCH---HHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 003991          584 FSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (781)
Q Consensus       584 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  659 (781)
                      .+.+.+++|+++.+..+.   .+++..++..+...|. .-+.++.+|..+.++|+|++|.++.+.+++..|++..+..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            477888888888877654   4688888888887774 467888899999999999999999999999999988765554


Q ss_pred             HHH
Q 003991          660 CLA  662 (781)
Q Consensus       660 ~~~  662 (781)
                      ..+
T Consensus       119 ~~I  121 (134)
T 3o48_A          119 SMV  121 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.87  E-value=0.021  Score=47.71  Aligned_cols=83  Identities=11%  Similarity=0.047  Sum_probs=69.0

Q ss_pred             cCCccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 003991          376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (781)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (781)
                      ....+++..+..|.++....+.   ..++.+++.+++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            3556789999999999987755   4789999999998884 46789999999999999999999999999999999877


Q ss_pred             HHHHHHH
Q 003991          452 WKRRGQA  458 (781)
Q Consensus       452 ~~~la~~  458 (781)
                      ......+
T Consensus       115 ~~Lk~~I  121 (134)
T 3o48_A          115 GALKSMV  121 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.78  E-value=0.017  Score=48.94  Aligned_cols=80  Identities=11%  Similarity=0.049  Sum_probs=67.5

Q ss_pred             CccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991          378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (781)
                      ..+++..|..|.++....+.   .+++.+++.++...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            57889999999999987755   4789999999998884 5578899999999999999999999999999999877655


Q ss_pred             HHHH
Q 003991          454 RRGQ  457 (781)
Q Consensus       454 ~la~  457 (781)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.47  E-value=0.33  Score=53.38  Aligned_cols=123  Identities=11%  Similarity=-0.026  Sum_probs=70.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 003991          524 GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (781)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (781)
                      +.......+.+.|...+.......+-+.    ..+..++.-+...+...++...+.+......+ ......++...+..|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence            3333444567777777766544322221    12223333333344345666666665543333 222333333344568


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      ++..|...|.+.-......+...+.+|..+..+|+.++|..+|+++..
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888888766554444577778888888888888888888887765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.22  E-value=0.19  Score=51.69  Aligned_cols=186  Identities=15%  Similarity=0.069  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHH-----
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKS-----  518 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~p~~~~-----  518 (781)
                      .+.+.+|.+|...|++++-.+++.......+.-+     .....+-..+.. .+..+.-++.+..+++...+...     
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999999999998888887655443332     223333333333 34555666666666654332211     


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHH--
Q 003991          519 -AYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRFSK--  586 (781)
Q Consensus       519 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~--  586 (781)
                       .-..+|..|...|+|.+|.+.+.+..+.-.      .-.+++..-..+|...+++.++...+.++....   +.+|.  
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence             223678888888888888888887776421      125666777778888888888888888876442   12232  


Q ss_pred             --HHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCCH
Q 003991          587 --AYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSN-----IECLYLRASCYHAIGEY  635 (781)
Q Consensus       587 --~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~  635 (781)
                        ....-|..+. ..++|.+|..+|-.++......     ..+...++.+-...++.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence              3445577777 7888888888888876543221     23444555555555553

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.13  E-value=0.59  Score=40.47  Aligned_cols=98  Identities=13%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CC-------
Q 003991          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NP-------  446 (781)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p-------  446 (781)
                      |..++..+.++..++-.|.|..++-++..     -+...+.+..+.||....+|..|+..++..+.-    +|       
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            33346666777777777877777665543     345667777777777778888888777777731    22       


Q ss_pred             ------CcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003991          447 ------SAGE-AWKRRGQARAALGESVEAIQDLSKALEFEP  480 (781)
Q Consensus       447 ------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p  480 (781)
                            .+.+ .+..+|.++.+.|+.++|+.++.......|
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence                  2222 334455555555666666666655555554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.98  E-value=1.7  Score=44.55  Aligned_cols=130  Identities=10%  Similarity=-0.079  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCc--H--H
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSA--G--E  450 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~  450 (781)
                      ..+.+.+|..|...|++++-..++......-+.-+.+.     ..+-..+.. -+..+.-++.+..+++...+.  .  .
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888889999998888888776543322222211     111111111 122333333333333321111  0  1


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003991          451 --AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACV  510 (781)
Q Consensus       451 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~  510 (781)
                        .-..+|..|...|+|.+|...+.+....-..  +    .+++.....+|...+++.++...+.++.
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              1224555556666666665555555442111  1    2334444445555555555555555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.048  Score=61.04  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD  643 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  643 (781)
                      ..+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+.
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence            334445555555555555555555555555555555555555555555554443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.78  E-value=0.86  Score=39.49  Aligned_cols=189  Identities=14%  Similarity=0.026  Sum_probs=88.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----C--------
Q 003991          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----D--------  513 (781)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~--------  513 (781)
                      |..++....++.++.-.|.+..++-++..     -+...+.+..+.||...++|..|+.+++..+.-    +        
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            33334455566666667777766655432     234555666666777777777777777776621    1        


Q ss_pred             -----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCH-
Q 003991          514 -----KENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS-  585 (781)
Q Consensus       514 -----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~-  585 (781)
                           |.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.--. ..-+.+...       ..+.... 
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~-------~~~~~~i~  177 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR-------QTGRRGIE  177 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------------CHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH-------hhhhccch
Confidence                 12221 23345555555555555555555555554433222111000000 000000000       0000000 


Q ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhccC
Q 003991          586 -KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC-LYLRASCYHAIGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       586 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~  651 (781)
                       ..+......+.....     ...++-...-|.-... -...+.-|..+|-.++...+|...-+.+|.
T Consensus       178 ~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          178 EEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence             000001111111110     2334444555653332 234677788899999999999999888885

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.62  E-value=0.85  Score=52.70  Aligned_cols=100  Identities=14%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991          389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       389 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  467 (781)
                      ......+++++|.. ++..    -| +...+...+..+...|.++.|+...+        ++...   .......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456788888866 4411    11 01222556666777777777776542        22211   233466788888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (781)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (781)
                      |.+..+.     .++...|..+|..+...++++.|+.+|.++
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            8776532     246777888888888888888888877764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.56  E-value=0.75  Score=53.14  Aligned_cols=44  Identities=23%  Similarity=0.172  Sum_probs=20.0

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (781)
                      ...|++++|.+..+.     .++...|..+|..+...++++.|+.+|.+
T Consensus       663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            334444444444321     23344444455555555555555544444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.096  Score=58.64  Aligned_cols=115  Identities=11%  Similarity=0.103  Sum_probs=84.3

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 003991          394 EGK-YASAISIFDQILKEDPMYPEALIGRGTARA--F-QRELEAAISDFTEAIQS--------NPSA----------GEA  451 (781)
Q Consensus       394 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~--------~p~~----------~~~  451 (781)
                      .++ ++.|+.++++..+.+|..... +..+.+..  . ..+--+|+..+.++++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 688999999999999876433 22222222  1 22344577777666542        2222          235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003991          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (781)
Q Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (781)
                      +...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5566777888999999999999999999999999999999999999999999887765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.85  Score=40.59  Aligned_cols=108  Identities=8%  Similarity=-0.035  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      +++..+.++   ...|+++.|.++.+++     ++...|..+|......|+++-|..+|.++-.        +..+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence            345555554   5578888888887765     5677888888888888888888888887532        22344556


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (781)
                      ...|+.+.-...-+.+.....     +.....+++..|+++++++.|.+
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            666766554444444333221     12223344556666666666644

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.45  E-value=7.2  Score=42.80  Aligned_cols=269  Identities=12%  Similarity=0.010  Sum_probs=143.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003991          403 IFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (781)
Q Consensus       403 ~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  479 (781)
                      -+...+..+|+.+..-........   ..+++..-+.++..    .|.+....+.........|+..+|.....++....
T Consensus        57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~  132 (618)
T 1qsa_A           57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (618)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence            445556678888766554444332   35567666665443    37778877888888888888887877777766554


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH------
Q 003991          480 PNSADILHERGIVNFKFKDFNAAV--EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------  551 (781)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~--~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------  551 (781)
                      ...+.....+-..+...|......  .-+..++.  .++......++... . ... .++.-...++..+|...      
T Consensus       133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~--~~~~~~a~~l~~~l-~-~~~-~~~a~~~~al~~~p~~~~~~~~~  207 (618)
T 1qsa_A          133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK--AGNTGLVTVLAGQM-P-ADY-QTIASAIISLANNPNTVLTFART  207 (618)
T ss_dssp             SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH--TTCHHHHHHHHHTC-C-GGG-HHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHhC-C-HHH-HHHHHHHHHHHhChHhHHHHHhc
Confidence            433333333333333323221111  11111111  11111111111100 0 000 00000011111122211      


Q ss_pred             -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH
Q 003991          552 -------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (781)
Q Consensus       552 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (781)
                             .....++.......+.+.|...+.......+-+...    +..++.-+...+...++...+.+......+ ..
T Consensus       208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~  286 (618)
T 1qsa_A          208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TS  286 (618)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HH
T ss_pred             cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hH
Confidence                   122333444455668899999998876543333322    223333334445366777778776654443 33


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcC
Q 003991          621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (781)
Q Consensus       621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  688 (781)
                      ....++...+..|+++.|..+|.+.-.-.++...       ..|-.|..+...|+-.+|...|..+..
T Consensus       287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r-------~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE-------WRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHccccccccHh-------HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4444445556789999999999876553333333       567778888889999999999988776

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.25  E-value=4.4  Score=42.65  Aligned_cols=183  Identities=8%  Similarity=-0.046  Sum_probs=84.0

Q ss_pred             ccCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hcC
Q 003991          428 QRELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF----KFK  497 (781)
Q Consensus       428 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~~  497 (781)
                      .|+++.|++.+....+.      .+....+...+..++...|+++...+++.-..........+...+.....    ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            36777777766444332      12345667777777778888877766665544443333332222221111    011


Q ss_pred             CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----c--ccHHHHHHHHHH
Q 003991          498 DFNAAVEDLSACVKLD----KE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----R--NFLEAWGHLTQF  560 (781)
Q Consensus       498 ~~~~A~~~~~~a~~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~--~~~~~~~~la~~  560 (781)
                      ..+.  ......+..-    .+       .......++.++...|++.+|...+.....-.    +  .-.+.+.....+
T Consensus       109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1110  0111111110    00       12233445566666666666665555543211    0  113444555555


Q ss_pred             HHHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          561 YQDLANSEKALECLQQVLY---IDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      +...+++.+|...++++..   ..+..+    ..+...|.++...++|.+|..+|..++
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5555555555555555421   112222    223344555555555555555555444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.10  E-value=0.45  Score=49.33  Aligned_cols=88  Identities=14%  Similarity=0.056  Sum_probs=73.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-----cchh---h---------------hhhHHHHHHhhhCHHHHHHHHHHHHhcC
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQS-----YEIQ---D---------------ICNRAFCYSQLELHKHVIRDCDKALQLD   99 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~-----~~~~---~---------------~~~rA~~~~~~~~~~~A~~~~~~al~~~   99 (781)
                      +......|+...|+..+.+|+.+.     ++..   .               ...++.+++..|++.+|+..+..++..+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            344567899999999999999885     1110   0               1135667889999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (781)
Q Consensus       100 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  130 (781)
                      |-.-.+|..+-.++...|+..+|+..|+++-
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.03  E-value=1.2  Score=39.56  Aligned_cols=43  Identities=23%  Similarity=0.132  Sum_probs=20.3

Q ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003991          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (781)
Q Consensus       529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (781)
                      ..|+++.|.+..+..     ++...|..+|......|+++-|..+|.+
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            344444444444332     3344455555555555555555555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.96  E-value=1.1  Score=42.76  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=38.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (781)
                      ++..|+.++|+......++.+|.+......+...++-.|+++.|..-++.+.+++|...
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            45566666666666666666666666666666666666666666666666666666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.54  E-value=6.5  Score=41.33  Aligned_cols=253  Identities=11%  Similarity=-0.019  Sum_probs=137.6

Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH---HH-HcCC
Q 003991          395 GKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA---RA-ALGE  464 (781)
Q Consensus       395 g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~-~~g~  464 (781)
                      |++++|++.+....+.      .+....+...+..++...|+++...+.+.-..........+...+...   +. ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            5666776666544432      233456667777777777888777666654443333222221111111   11 1122


Q ss_pred             HHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHH
Q 003991          465 SVEAIQDLSKALEF----EPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLD--KEN----KSAYTYLGLAL  527 (781)
Q Consensus       465 ~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~----~~~~~~la~~~  527 (781)
                      .+.  ......+..    ...       ...+...++.++...|++.+|...+.....-.  ..+    .+.+.....++
T Consensus       110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            111  111122221    111       13456778999999999999999888875431  111    45677788889


Q ss_pred             HHcCCHHHHHHHHHHHHh---hCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH---HHHHHHHH
Q 003991          528 SSIGEYKKAEEAHLKAIQ---LDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKA---YHLRGLLL  595 (781)
Q Consensus       528 ~~~g~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~---~~~la~~~  595 (781)
                      ...+++..|...++++..   ..+..    ...+...|.++...++|.+|-.+|..++....  .++..   ....+.++
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~  267 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF  267 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            999999999999888642   12222    34667788889999999999999988875421  12211   11111111


Q ss_pred             H-HCCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcc
Q 003991          596 H-GLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHA--IGEYREAIKDYDAALDLEL  650 (781)
Q Consensus       596 ~-~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p  650 (781)
                      . -.+....--....+... ++  .....+..+..++..  ..++......|...+.-+|
T Consensus       268 ~iLa~~~~~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~  326 (445)
T 4b4t_P          268 LVLSPYGNLQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD  326 (445)
T ss_dssp             HHHSSCSSTTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred             HHhCCCCchHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence            1 11111111111111111 11  123456666666654  3567887777777665554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.23  E-value=1.1  Score=46.35  Aligned_cols=111  Identities=14%  Similarity=0.033  Sum_probs=67.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 003991          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (781)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (781)
                      |......|+.+.|...+.+++.+....+-.-  ..     ...+-.+ ...++...      ..+...++..+...|++.
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence            3344456788888888888887753321000  00     0001000 11111110      123445667777788888


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      +|+..+..++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888777644

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.14  E-value=1.3  Score=42.10  Aligned_cols=120  Identities=13%  Similarity=0.003  Sum_probs=69.4

Q ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003991          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (781)
Q Consensus       527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (781)
                      +.+.|..++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|.....-..+..+.       .|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~   79 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ   79 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence            345566777777777777777777777777777777777777777777777777665433221111000       0000


Q ss_pred             HHHHhhc--cCC---CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          607 DLSSGLG--IDP---SNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       607 ~~~~al~--~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      .=...+.  ..|   ..+   .....-+......|+.++|...-.++++..|..+
T Consensus        80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            0011111  111   112   2333445566678999999999999999988654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.01  E-value=0.84  Score=48.61  Aligned_cols=80  Identities=14%  Similarity=0.020  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003991          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (781)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (781)
                      ..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667899988899999999999999999999999999999999999999999999999998877789999988887754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.83  E-value=2.6  Score=48.49  Aligned_cols=95  Identities=9%  Similarity=-0.108  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHHHHH
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRA  626 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la  626 (781)
                      .+..+...|.+.|+.++|...|......    ..-+...|..+...|.+.|+.++|.+.|++..+.  .| |...|..+-
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI  207 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHH
Confidence            4445555555555555555555443211    1223555555555566666666666666655443  23 345555555


Q ss_pred             HHHHHhCC-HHHHHHHHHHHHhh
Q 003991          627 SCYHAIGE-YREAIKDYDAALDL  648 (781)
Q Consensus       627 ~~~~~~g~-~~~A~~~~~~al~~  648 (781)
                      .++.+.|+ .++|.++|++..+.
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHc
Confidence            55555555 34555666555543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.52  E-value=1  Score=48.01  Aligned_cols=80  Identities=18%  Similarity=0.087  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  563 (781)
                      ..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999888888898888887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.12  E-value=3.7  Score=49.31  Aligned_cols=51  Identities=12%  Similarity=-0.012  Sum_probs=34.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (781)
                      +...+...+.++-|..    .+...|.++...+.+|.++...|++++|..+|.++
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3444555666655443    33456667777777888888888888888888775

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.67  E-value=6  Score=45.58  Aligned_cols=98  Identities=8%  Similarity=-0.134  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 003991          416 EALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERG  490 (781)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  490 (781)
                      ..+..+-..|.+.|+.++|...|......    ..-+...|..+...|.+.|+.++|.+.|+++.+.. .-+...|..+.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45677777888888888888888665432    23456677788888888888888888888887643 12566777777


Q ss_pred             HHHHhcCC-HHHHHHHHHHHHHhC
Q 003991          491 IVNFKFKD-FNAAVEDLSACVKLD  513 (781)
Q Consensus       491 ~~~~~~~~-~~~A~~~~~~a~~~~  513 (781)
                      ..+.+.|+ .++|.+++++.....
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            77777776 467778888877664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.59  E-value=17  Score=43.45  Aligned_cols=190  Identities=12%  Similarity=-0.028  Sum_probs=110.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---------------------  512 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------  512 (781)
                      .+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-..                     
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34445566666665543    34556677777788888888888888888888775211                     


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003991          513 --DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (781)
Q Consensus       513 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  585 (781)
                        ....+..|..+..++...+.++.+++..+.|++..+.+     ...|.++-..+...|+|++|...+...-.. ....
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~  971 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK  971 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence              01123456667778888888888888888888765432     225677777888889988887777543221 1223


Q ss_pred             HHHHHHHHHHHHCCCHH------------HHHHHHHH-hhcc-CCCC-HHHHHHHHHHHHHhCCHHH-HHHHHHHHHhh
Q 003991          586 KAYHLRGLLLHGLGQHK------------KAIKDLSS-GLGI-DPSN-IECLYLRASCYHAIGEYRE-AIKDYDAALDL  648 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~------------~A~~~~~~-al~~-~p~~-~~~~~~la~~~~~~g~~~~-A~~~~~~al~~  648 (781)
                      ..+..+...+...|..+            +-...+.. |-.. ++.+ +..|..|=..+...|++.. |...|+++.++
T Consensus       972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            34444444444444332            22222211 1111 1221 2333334444555666655 44567777765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.51  E-value=1.3  Score=46.46  Aligned_cols=60  Identities=8%  Similarity=0.021  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEA  441 (781)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (781)
                      .++..+|..++..|+++.|.+.|.++.....   ...+.++....++...+++..+..++.++
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3455555555555555555555555544321   12233444444444444444444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.07  E-value=1.5  Score=46.14  Aligned_cols=97  Identities=21%  Similarity=0.301  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HHH
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENK----SAY  520 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~~~----~~~  520 (781)
                      .++..+|..|...|+++.|.+.|.++......   -.+.+.....++...++|..+...+.++.....  .++    ...
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            34555666666666666666666665544222   245555666666666666666666666544311  111    122


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003991          521 TYLGLALSSIGEYKKAEEAHLKAIQL  546 (781)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~al~~  546 (781)
                      ...|.++...++|..|...|..++..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            33455555566666666666555443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.88  E-value=7.6  Score=44.43  Aligned_cols=250  Identities=14%  Similarity=0.072  Sum_probs=114.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---cH----HHHHHHH
Q 003991          392 VNEGKYASAISIFDQILKED-PMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNP---S---AG----EAWKRRG  456 (781)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~la  456 (781)
                      ...|+.++++..+.+.+... .++    ..+++.+|.++...+  .+++.++...+....   .   ..    .+-..+|
T Consensus       385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34566666666666655321 122    234555565555444  356666666655332   0   11    2334555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003991          457 QARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  534 (781)
                      .++.-.++ +++...+...+..+...  ..+-+.+|.++...|+-+.....+..+.....+...-...+|..+...|+.+
T Consensus       463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred             HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence            55554444 34555555555433211  1244456666667777655555555544433222222233444444566665


Q ss_pred             HHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Q 003991          535 KAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (781)
Q Consensus       535 ~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (781)
                      .+....+.........  ..+...+|..|...|+.......+..+.....++..-.-.+|..+...|+.+.+...+....
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~  621 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS  621 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            5555544433321111  12234455666677775444445555543222222222223333334455444444443332


Q ss_pred             ccCCCCHHHHHHHHHHHHHh--CC-HHHHHHHHHHHH
Q 003991          613 GIDPSNIECLYLRASCYHAI--GE-YREAIKDYDAAL  646 (781)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~--g~-~~~A~~~~~~al  646 (781)
                      .  ..++.+.+..+.++-..  |+ ..+++..+.+..
T Consensus       622 ~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          622 K--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             G--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             h--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            2  22355554444443332  22 255666666554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.68  E-value=0.94  Score=47.82  Aligned_cols=125  Identities=11%  Similarity=0.082  Sum_probs=38.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------
Q 003991          491 IVNFKFKDFNAAVEDLSACVK---L--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------------  546 (781)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~a~~---~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------  546 (781)
                      ..++..+++++|..+-...+.   +        ++-...+|+.++.++...|+.............+             
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            345566778888777665541   1        2223445666666666666655544333222211             


Q ss_pred             --Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC
Q 003991          547 --DR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (781)
Q Consensus       547 --~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (781)
                        ++ .....+..+-+.|...+.++.|..+..++.  .|..       ...++.+|.++.-+++|.+|.+++..|+...|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              11 113445555556666666666666666553  2211       22344556666666666666666666665555


Q ss_pred             C
Q 003991          617 S  617 (781)
Q Consensus       617 ~  617 (781)
                      .
T Consensus       302 ~  302 (523)
T 4b4t_S          302 H  302 (523)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.60  E-value=3  Score=44.04  Aligned_cols=126  Identities=10%  Similarity=-0.032  Sum_probs=59.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHHh---
Q 003991          457 QARAALGESVEAIQDLSKALE---F--------EPNSADILHERGIVNFKFKDFNAAV----------EDLSACVKL---  512 (781)
Q Consensus       457 ~~~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~a~~~---  512 (781)
                      ..+...+++++|..+-...+.   +        ++-...+|+.++.++...|+.....          ..+..+++.   
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            344567889999888776551   1        2223557777778777777765432          233333332   


Q ss_pred             --CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003991          513 --DKE-NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (781)
Q Consensus       513 --~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (781)
                        ++. ....+..+-+.|...+.++.|..+..++.  .|..       ...++.+|.++...++|.+|..++..|+...|
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence              221 24677888999999999999999999984  3321       56678899999999999999999999999887


Q ss_pred             CC
Q 003991          583 RF  584 (781)
Q Consensus       583 ~~  584 (781)
                      .+
T Consensus       302 ~~  303 (523)
T 4b4t_S          302 HN  303 (523)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.46  E-value=33  Score=39.28  Aligned_cols=245  Identities=11%  Similarity=0.047  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-  449 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  449 (781)
                      ..+++.+|.++.  |...+++.++...+..+..      +.    .+-..+|.++...++ +++.+.+...+..+.... 
T Consensus       413 ~GAllaLGli~a--g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~  489 (963)
T 4ady_A          413 GGSLYGLGLIYA--GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG  489 (963)
T ss_dssp             HHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHhcC--CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence            345555665554  4445788888888765430      11    345677777776665 466777777776443221 


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 003991          450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLG  524 (781)
Q Consensus       450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la  524 (781)
                       .+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.+.+....+.... . .++.    +...+|
T Consensus       490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alg  567 (963)
T 4ady_A          490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-S-DESLLRYGGAFTIA  567 (963)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHH
Confidence             34556778888888877666666666654332222233444445567777666665555443 2 2333    234567


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCC-H
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQ-H  601 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~-~  601 (781)
                      ..|...|+...-...+..+.....++..-...+|......|+.+.+...+.....  ..++.+.+..+.++-.  .|+ .
T Consensus       568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~  645 (963)
T 4ady_A          568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL  645 (963)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence            7788899966555566666654333333333344444445665444444433222  2345555444333322  333 3


Q ss_pred             HHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhC
Q 003991          602 KKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIG  633 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g  633 (781)
                      .+++..+.+... ++++.   .+...||.+.....
T Consensus       646 ~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          646 QSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence            678888887754 44421   34555665554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	781
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-32
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-32
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-29
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-26
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-26
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-25
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-19
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-18
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-14
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-18
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-18
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-15
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-11
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-17
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-11
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-08
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-17
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-15
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-12
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-08
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-12
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	6e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	9e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	1e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.003
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	9e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	2e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 5e-32
 Identities = 43/233 (18%), Positives = 93/233 (39%)

Query: 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
            + + + ++  P +  A    G     Q E+  AI  F +A+  +P+  +A+   G    
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
                  A+    +AL   PN A +      V ++    + A++     ++L      AY
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
             L  AL   G   +AE+ +  A++L     ++  +L    ++  N E+A+   ++ L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              F+ A+     +L   G+ ++A+      + I P+  +      +    + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 9e-32
 Identities = 45/215 (20%), Positives = 87/215 (40%)

Query: 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494
            + + +AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           + + F+ AV      + L   +   +  L       G    A + + +AI+L  +F +A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
            +L    ++  +  +A +C    L +    + + +    +    G  ++A++     L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            P         AS     G+ +EA+  Y  A+ + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-29
 Identities = 42/250 (16%), Positives = 87/250 (34%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
                    +       K C  +  +++        + G     +G+   AI  F++ + 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            DP + +A I  G      R  + A++ +  A+  +P+               G    AI
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
               +A+E +P+  D          +      A +  +  ++L   +  +   L      
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ + I   F+ AY 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 590 LRGLLLHGLG 599
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-26
 Identities = 63/329 (19%), Positives = 122/329 (37%), Gaps = 1/329 (0%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684
            A  Y+  G    AI  Y  A++L+    + +     A  +K  ++  A    +      
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLC 301

Query: 685 IDGDIDPLFKEYWCKRLHPKNVCEKVYRQ 713
                         +         ++YR+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRK 330

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 6e-26
 Identities = 34/186 (18%), Positives = 75/186 (40%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++ G        +  A++ + + L   P +             Q  ++ AI  +  
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI+  P   +A+     A    G   EA    + AL   P  AD L+    +  +  +  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++   
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 561 YQDLAN 566
            +++ +
Sbjct: 383 LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-25
 Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 40/341 (11%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--------------- 424
           +    L          +   +       +K++P+  EA    G                 
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 425 -------------------RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
                                   ++E A+  +  A+Q NP         G    ALG  
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
            EA     KA+E +PN A      G V     +   A+      V LD     AY  LG 
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
            L     + +A  A+L+A+ L  N     G+L   Y +    + A++  ++ + +   F 
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            AY      L   G   +A    ++ L + P++ + L   A+     G   EA++ Y  A
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 646 LDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           L++  +          VLQ     Q+ +  Y  A +I+  F
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 5e-13
 Identities = 23/119 (19%), Positives = 44/119 (36%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             D   +   A   +G  A A   ++  L+  P + ++L      +  Q  +E A+  + 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +A++  P    A           G+  EA+    +A+   P  AD     G    + +D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 43/397 (10%), Positives = 108/397 (27%), Gaps = 20/397 (5%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    Q    +   R C +  + +P      +L         R + +        +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61

Query: 134 LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193
                  + +  L  +     Q +     Y  +  +    +      A   ++       
Sbjct: 62  -QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN 253
                 +   + D+    S   +         +          ++    +         N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 254 HNGSSDGSKSTHASRDASEINRQSSD------DFDICNGPIDKA-SVNERHGRQTNGTHD 306
             G      + H    A  ++    D      +        D+A +   R    +     
Sbjct: 181 AQGEIW--LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNK 366
           VH  L+         +   ++Y ++        D+  + +    +   + E  +      
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426
           + C            D   +    +  +G    A+ ++ + L+  P +  A     +   
Sbjct: 299 RLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
            Q +L+ A+  + EAI+ +P+  +A+   G     + 
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 41/249 (16%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
             E     ++  DF AA        + + +N      L           ++      AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALE--------------------------------- 572
            +    EA+ +L   Y++    ++A+E                                 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 573 -CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
                 L  +          G LL  LG+ ++A       +   P+           ++A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691
            GE   AI  ++ A+ L+ + ++       A+      L  A   +     +     + P
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 692 LFKEYWCKR 700
                    
Sbjct: 235 NHAVVHGNL 243

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 9e-08
 Identities = 10/123 (8%), Positives = 24/123 (19%)

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
               +  G  + A +        +P N   L L +S +        +      A+     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 652 SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVY 711
             E +      + ++                     D               +   +   
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

Query: 712 RQP 714
              
Sbjct: 126 SAL 128

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L   R + +A+      L+ S     +  N A  Y +  L    I    +A++L P    
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132
           AY     A    G   EA   +      
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICN-RAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L    + ++A    ++ L       D  N  A    +    +  +R   KAL++ P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A+          G+ +EAL  +++   
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 105 AYILKGCAFSALG 117
           AY   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            N    ++        I   +KA+ LDP  L AYI  G         + A++ + +   
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 41  IELAKLC-SLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAF 113
           +P L +AY   G  +
Sbjct: 63  NPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 2e-19
 Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 6/242 (2%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA- 458
           +     Q         ++ +G       ++ L+     + + + ++       K      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
             A    +  +Q  +K       S    +    +      +   +++L     +D   + 
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             + LG+  +         +    +            HL    +    + +A    +   
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +     + Y+   +L    G H   I      + +                   E R+ 
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE 239

Query: 639 IK 640
           +K
Sbjct: 240 VK 241

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 1e-18
 Identities = 23/219 (10%), Positives = 59/219 (26%), Gaps = 6/219 (2%)

Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-ERGIV 492
           +     +A        ++     +   +     +  Q   K L  +   A     E+ + 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQDLW 61

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           N  FK+    ++  +        ++          ++ G Y +  +       +D     
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L        ++   ++                   G +     Q  +A        
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            + PSN +     A    + G++   I  Y  ++ ++  
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 5/194 (2%)

Query: 397 YASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           + + I+      K                   A        + +       +        
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + G        +   ++  S +          L   G +       + A        +L 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             N   Y  L +  SS G++      + ++I +   F  A  +L +       S   ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

Query: 574 LQQVLYIDKRFSKA 587
              V    K F K 
Sbjct: 243 KWGVSDFIKAFIKF 256

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 14/156 (8%), Positives = 46/156 (29%), Gaps = 10/156 (6%)

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +   +A  L  +  ++     + +      +   +  Q++L  D  ++    +   L
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSR---QALQDLYQKMLVTDLEYALDKKVEQDL 60

Query: 595 L-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653
             H        ++  +        +     L      A G Y + +++     +++L   
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 654 EKF-----VLQCLAFYQKEIALYT-ASKINSEFCWF 683
            K      +          +   + +     + C  
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV 156

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +   ++ +                L+  G    ++ +   A S +  A Q  P
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP 183

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           S G+ + +     ++ G+ +  I    +++  +     
Sbjct: 184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 12/113 (10%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-----NIEC 621
           S ++ + L+Q   +    + +      +       +   + +   L  D        +E 
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYALDKKVEQ 58

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQKEIALYTA 673
                +  + I   +   K+       E+  ++  F+     FY + +     
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT 111

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-18
 Identities = 35/269 (13%), Positives = 87/269 (32%), Gaps = 13/269 (4%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG------QHKKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++            ++ ++     + 
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
           + P N              G   +     +  LDL+      +++  L    +++     
Sbjct: 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273

Query: 674 SKINSEF-----CWFDIDGDIDPLFKEYW 697
                           +  + D + KEYW
Sbjct: 274 DNKEDILNKALELCEILAKEKDTIRKEYW 302

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 20/171 (11%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
            +      +  I     F + + +     Q    SE+A +  +  + ++      +H R 
Sbjct: 25  PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84

Query: 593 LLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
           +LL  L +   + +  +++ +   P N +  + R      + +  + ++     L+ +  
Sbjct: 85  VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 144

Query: 652 SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLH 702
           +          +  ++  +      ++E  + D     D      W +R  
Sbjct: 145 NYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 2e-18
 Identities = 51/294 (17%), Positives = 101/294 (34%), Gaps = 21/294 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 494 ----FKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+L     +      LG+  +  GEY KA +    A+ + 
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYR----EAIKDYDAALDLELDSMEKFV 657
               L +   +        +    I          +   DA    +   +   +
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 9e-15
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
                    G  R  + +L  A+  F  A+Q +P   EAW+  G  +A   + + AI  L
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------ 526
            + LE +P++   L    +          A E L   ++         T           
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136

Query: 527 ---------LSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQ 575
                    L S   + + +E  L A++L       +    L   +      +KA++C  
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 196

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
             L +       ++  G  L    Q ++A+      L + P  I   Y        +G +
Sbjct: 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256

Query: 636 REAIKDYDAALDLELDSME 654
           REA++ +  AL+++  S  
Sbjct: 257 REAVEHFLEALNMQRKSRG 275

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 24/247 (9%)

Query: 474 KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           K  +FE            E G+   +  D   AV    A V+ D ++  A+ YLG   + 
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
             +   A  A  + ++L  +   A   L   + + +   +A E L+  L     ++    
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                  G G                               +   + E  + + AA+ L+
Sbjct: 126 PAEEGAGGAGLG-------------------PSKRILGSLLSDSLFLEVKELFLAAVRLD 166

Query: 650 LDSMEKFVLQCLAFYQKEIALY-TASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCE 708
             S++  V   L         Y  A    +       +  +            +      
Sbjct: 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226

Query: 709 KVYRQPP 715
             YR+  
Sbjct: 227 AAYRRAL 233

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 25/243 (10%), Positives = 66/243 (27%), Gaps = 7/243 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--RAFQRELEAAISDFTEAIQSNPS 447
            + +     + +   +  L+ +P        R     R  +      +      ++++  
Sbjct: 82  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141

Query: 448 -AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                  RR  A  A     E +      +    ++    H R  +  +      +    
Sbjct: 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                +  +                   ++   + + +      L       +    L +
Sbjct: 202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS 257

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             ++ + LQ++   +K       L    L  L   K+ ++  S+   +DP     L    
Sbjct: 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317

Query: 627 SCY 629
           S +
Sbjct: 318 SKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 35/291 (12%), Positives = 74/291 (25%), Gaps = 50/291 (17%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV----------NFKFKDF 499
            A +   Q R A       ++  S+ L   P+ A + + R  V                 
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHL 557
            A +  L +C++++ ++   + +    LS + E  + +  E   + ++ D      W + 
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 558 TQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613
                Q      + L     ++  +     ++H R  LL  L     +            
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209

Query: 614 ---------------------------IDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                                           +    L       +    E+ K+     
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269

Query: 647 DLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697
                 +               AL           +F     +DP+   Y 
Sbjct: 270 PENKWCLL-------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 4/153 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R            +               E +        F    + +   +   +    
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                 +   +    L   +E+ ++L +           +                ++  
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           S    +D    +    L           K E A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 6/85 (7%), Positives = 18/85 (21%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
              R    ++  +                  +     ++  E+      +I    A    
Sbjct: 230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289

Query: 429 RELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  F+     +P       
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYLD 314

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 79.5 bits (194), Expect = 5e-17
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 6/228 (2%)

Query: 430 ELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           + E  ++   + + S    +    +    RG    +LG    A  D S+AL   P+  ++
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A++  L   Q
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133

Query: 546 LDRNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            D N      W +L +   D   +++ L+   +    ++            +      ++
Sbjct: 134 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              D +    +     E  +     Y ++G+   A   +  A+   + 
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 73.3 bits (178), Expect = 7e-15
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFY 561
           +DL A  + D  +     +L LA   + E +  E       + D+               
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 2/232 (0%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
              + +          RG+   + G  A A + F Q L   P  PE     G        
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            +AA   F   ++ +P+   A   RG A    G    A  DL    + +PN         
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           +   K  +  A         K DKE    +   +    +S     ++ +        L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  E   +L ++Y  L + + A    +  +  +      +    L L  LGQ
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 30/168 (17%), Positives = 60/168 (35%)

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +   
Sbjct: 24  QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
             N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++     
Sbjct: 84  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
                   + E +            + +     +++       E  L 
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 191

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 561 YQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
            Q     E  L  ++Q+L      D   ++  + RG+L   LG    A  D S  L I P
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALY 671
              E            G +  A + +D+ L+L+             L      +      
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128

Query: 672 TASKINSEFCWF 683
            A   +     F
Sbjct: 129 LAFYQDDPNDPF 140

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 5e-16
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +PSA +  K +G       +  EA     +A+   P  A     R +   K +    A+ 
Sbjct: 1   SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           D    ++LD ++  A+ +LG     +  Y +A     +A  L +     +G         
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-- 117

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A +     +   +   ++     L      + ++ +++          +      
Sbjct: 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174

Query: 625 RASCYHAIGEYREAIKD 641
           +A       +Y   + +
Sbjct: 175 QACIEAKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 1e-13
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + +A    GQ +  +    EAI +L +A            +      +      A +  
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKR 124

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++  + ++ +  +  L      E ++  E   +  +   +                 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 567 SEKALECL 574
               ++ L
Sbjct: 185 YMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.5 bits (161), Expect = 4e-13
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 5/193 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           + L  +G      R+   A + +  AI  NP     +  R      + +  +A+ D  +A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           LE +  S       G    + + ++ A+ +L     L KE +  +     +       + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LRI 119

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
           A++    +I+  R   E+  H        A  E+ LE  Q+     +        +  + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 596 HGLGQHKKAIKDL 608
               ++   + +L
Sbjct: 180 AKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 23/157 (14%), Positives = 51/157 (32%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G  L    +Y +A   + +AI  +      + +    Y  +   E+AL   ++ L +D 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           +  KA+   G     +  + +AI +L     +                 I + +      
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

Query: 643 DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE 679
           +  +  E +          A  ++E+     +    E
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 355 LKETSNEAKRNKKF-----CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           LKE  N     +K+     C  R      +   +  +R +  +   +   A++   + L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            D    +A    G  +      + AI++   A          +     +   +     A 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AK 121

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +    ++E      +      +      +    +E+     +  +++           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 530 IGEYKKA 536
             +Y   
Sbjct: 182 HDKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +L   R + +A       + ++  +     NRA CY +++  +  + DC +AL+LD   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           +A+   G     +   +EA++  ++ Y   L +   L    ++   L  AK+ R  + E 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 164 DVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRD 206
              +  S L    + L A ++  E  E     +  +     R 
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-14
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           L   G++    KD+  A++  S    +   +      +G   + +    +AE+A  ++I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
            D++   A+      Y      + A++ L++ L   +                    + I
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------------------GNQLI 106

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
                GL       E LY  A  Y    E+++A +    A  ++ +     + + +    
Sbjct: 107 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166

Query: 666 KEIAL 670
           K+   
Sbjct: 167 KQKLY 171

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 9e-14
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ +RG       +   AI+DL +AL     +  I ++   + FK           
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE------ 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                           +    +   E+KKAEE    A  +                  + 
Sbjct: 122 ------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 567 SEKALECLQQVLYIDKR 583
            +KA+EC+ +    +  
Sbjct: 158 IDKAMECVWKQKLYEPV 174

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           +  AI+   E       ++W  A+    ++      I    N    Y+ L+      +  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAF 59

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            +++  D  L  AY  +G  +    + + A+   ++    
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G+ ++A E  ++AI+             +      + E+A E L Q + +   +      
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L+      K   +  ++   +     +    +  +      +Y +  +      +L
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 457 QARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           Q + AL  G+  +A++ L +A++  P  A +      +     DF  A E L   +KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC 573
           E     + L   + +    K   +    A  L  N  L              + E+  E 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 574 LQQVLYIDKRFSKAYHLRG 592
             Q+  + +      +   
Sbjct: 122 ALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           ++EG+   A+ +  + +K  P                 + E A     ++I+  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACV 510
             +      A     +  Q  + A                 ++   +D+    E      
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 511 KLDKENKSAYTYLGLA 526
           +L +E          +
Sbjct: 127 ELRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           + +L+ A+    EAI+++P          +     G+   A + L ++++  P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
           +   +    +      +  +    L + E  +             +Y++  E  L+  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 547 DRNFLEAWGHL 557
            +         
Sbjct: 129 RQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDF 438
               R S       +G +  A     Q +K  P Y           +A Q   + A    
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           T  +                     +  +  +   +  E       + ++  
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
               A+E L   +K   ++ S  +     L   G++++A+E  +++I+L   +L     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
               +     +   +       + +        +   L      +++  +       +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 617 SN 618
             
Sbjct: 131 EK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 558 TQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
           TQ+   L+    ++ALE L + +    + +        LL   G  ++A + L   + + 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           P  +           A    ++  +    A  L 
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG 94

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 65.3 bits (157), Expect = 7e-12
 Identities = 42/315 (13%), Positives = 87/315 (27%), Gaps = 41/315 (13%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-----MYPEALIGRGTARAFQR 429
           +  ++  +F   R    +N+G    A  +    L+E P         A    G     + 
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 430 ELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--- 480
           EL  +++   +  Q          A  +  ++ +   A G    A +   KA +      
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 481 -----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-----AYTYLGLALSSI 530
                    ++  R  + + +   + A     + +++    +          L     + 
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 531 GEYKKAEEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G+   A     +   L  N          A      ++Q   +   A   L+     +  
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 584 FSKA----YHLRGLLLHGLGQHKKAIKDLSSGL------GIDPSNIECLYLRASCYHAIG 633
            +      +         LG+ + A   L           +       L L    Y   G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 634 EYREAIKDYDAALDL 648
              +A +    AL L
Sbjct: 306 RKSDAQRVLLDALKL 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 34/252 (13%), Positives = 64/252 (25%), Gaps = 31/252 (12%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNF 494
           + I+ +    E    R Q     G   EA +    ALE  P              G V  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 495 KFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              +   ++  +    ++ +++        +       L + G  + A E   KA QL  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 549 NFL--------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--- 597
                             Q     A  ++A    +  + +   +     L+ L +     
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 598 ---------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                      Q  +    L +G            +R   +   G+   A          
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242

Query: 649 ELDSMEKFVLQC 660
           E  +      Q 
Sbjct: 243 EFANNHFLQGQW 254

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 38/187 (20%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRR 455
             ++             A   R        +  AA +      +    +N      W+  
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            +A+  LGE   A   L +  E   +   +                              
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-------------------------- 291

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEK 569
                  L       G    A+   L A++L        +F+     + Q  + L     
Sbjct: 292 --RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

Query: 570 ALECLQQ 576
             E  Q 
Sbjct: 350 LPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---- 522
                L          ++    R I      D  AA   L    K +  N          
Sbjct: 197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256

Query: 523 LGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
           +  A   +GE++ AE    +        +L  +       L Q Y        A   L  
Sbjct: 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316

Query: 577 VLYIDKR 583
            L +  R
Sbjct: 317 ALKLANR 323

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY---QDLANSEKALECLQQVLYIDK 582
            L S+ +  K E+                          +   +  K +  L+++L    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 583 --RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
                       +  + L +++KA+K +   L  +P N +   L      A+ 
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 5/107 (4%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQ--SNP 446
           V+          F        +               R  +     I    E +   S  
Sbjct: 10  VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
              +           L E  +A++ +   L+ EP +        +++
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-----HLKAIQLDRNFL 551
           +D     +   +       +KS        L          +       L          
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +   +L      L   EKAL+ ++ +L  + + ++A  L  L+
Sbjct: 73  DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---AVEDLSACVKLDKENK 517
           ++ + ++  +           S     E      + +  +     +  L   +    + +
Sbjct: 11  SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 70

Query: 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                 YL +    + EY+KA +     +Q +    +A        + + 
Sbjct: 71  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQ 600
           AI+LD+ +++ +         L     AL   + V+ +      A         +     
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 601 HKKAI------KDLSSGLGIDPSNIECLY 623
            ++AI      + +   L I+   IE  Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANS 567
           ++LDK+    Y     +  ++G+++ A   +   +++  +  +A                
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 568 EKALECLQQ 576
           E+A+   + 
Sbjct: 131 ERAIAGDEH 139

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 19/160 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             A I+ E+G V FK   +  AV      V                        +   + 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-------------------EMEYGLSE 53

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            ++   +   L A+ +L   Y  L    KA+EC  + L +D    K  + RG     + +
Sbjct: 54  KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640
            + A  D    L ++P N         C     E+ E  +
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G      GKY  A+  + +                                 E+  S  
Sbjct: 21  KGTVYFKGGKYVQAVIQYGK-------------------IVSWLEMEYGLSEKESKASES 61

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+         L E  +A++   KAL  +  +   L+ RG       +F +A  D 
Sbjct: 62  FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
              ++++ +NK+A   + +      E+ + +      +
Sbjct: 122 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEF---------------EPNSADILHERGIVNF 494
              K +G      G+ V+A+    K + +               E           +   
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           K +++  AVE     + LD  N+      G A   + E++ A+    K ++++     A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 555 GHLTQFYQDLANSEKA 570
             +    +      + 
Sbjct: 136 LQIFMCQKKAKEHNER 151

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            A K  G   AA G   +A + LS AL                     D           
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDDLRDFQFVEPFA 59

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++   A+T    A  + G                      W  L   Y        
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 570 ALECLQQV 577
           AL   ++V
Sbjct: 120 ALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----------------------EAWK 453
            A    G   A     E A    + A++                             A  
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
            + +A  A G +   I +L       P    +  +     +     + A+          
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131

Query: 514 KE 515
            +
Sbjct: 132 AD 133

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 3e-07
 Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             ++D+ K L      ++ L   G   FK +++  A++  +  ++  + +++A       
Sbjct: 15  VDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA--- 67

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
                             +L    L    ++      +++ + A++   + L ID   +K
Sbjct: 68  ---------------DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           A + R     GL ++ +A+ DL     I P +             I   ++  K  
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQI----------------LKEDPMYPEALIGRGTARAFQRE 430
            G        +  AI  + ++                 K  P+    ++  G  +    +
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E  
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 491 IVNFKFKDFNAA 502
            V  K K     
Sbjct: 153 KVKQKIKAQKDK 164

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+  Y         +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG       ++  A + + KA +LD   +    +    Y +  +  K  E  ++ + + +
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 583 RFSKAYHL-------RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              + Y          G       ++K AI   +  L    + 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +  + +A+  +D+  + DP     +  +      + +         +AI+    
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 448 AGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPN 481
             E       A+ R G +     +  +AI   +K+L     
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 33/235 (14%)

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALE------FEPNSADILHERGIVNFKFKDFNA 501
           A +   +         E   A     KA +       E  + +   E         +   
Sbjct: 36  AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95

Query: 502 AVEDLSACVKLDKENKSAYTYLGLAL-------SSIGEYKKAEEAHLKAIQLDRN----- 549
           AV+ L   +++                      + + +Y KA + +  A +         
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155

Query: 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQH 601
              + +              +A +   +++                +  +GL        
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215

Query: 602 KKAIKDLSSGLGIDPSNI---ECLYLRASC----YHAIGEYREAIKDYDAALDLE 649
             A + L  G   DP+     E  +L++           +  E  K++D  + L+
Sbjct: 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 23/198 (11%), Positives = 49/198 (24%), Gaps = 19/198 (9%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572
                        E   A ++ LKA    +           +    + ++   NS  A++
Sbjct: 39  LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHG-------------LGQHKKAIKDLSSGLGIDPSNI 619
            L+  + I     +                             +   +  +       + 
Sbjct: 99  SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE 679
           +C    A      G+Y EA   Y   +   + +          F +K +    A+   + 
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218

Query: 680 FCWFDIDGDIDPLFKEYW 697
                     DP F +  
Sbjct: 219 ARTLQEGQSEDPNFADSR 236

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 19/160 (11%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           + I+ ERG V FK   +  A+      V                        ++  ++ +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWL-------------------EYESSFSNEE 53

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           A +     L +  +L   +  L     A+E   + L +D    K    RG     +   +
Sbjct: 54  AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
            A  D    L + P+N       A C   I       K  
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 153

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             G+ + R+  A   L    EA +   + L+ E N+  +      +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 22/108 (20%), Positives = 48/108 (44%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           V L  +    Y+    AL  +  +++A+  + + ++ + N  +    L
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 44/107 (41%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G    S+G    A + + +AI+LD +    + + +  Y    + +KA E   + + +  
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            + K Y  +   L  L + ++A +    GL  + +N +      +  
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-------YTYLGLALSSIGEYK 534
           +A+   E G V +   D+      +   ++   E + +         YL  A+   G+  
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           KA     K ++LD     A G+L  F   +A
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+      +      +     + L               
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-------------- 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 61  ----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 116

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 117 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQ----------------ILKEDPMYPEALIGRGTARAFQRE 430
            G     + +   AI  + +                + K+  +     +   T     ++
Sbjct: 23  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
              AI   ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   
Sbjct: 83  YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142

Query: 491 IVNFKFKDFN 500
           +   K K+  
Sbjct: 143 LCVNKLKEAR 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	781
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.66
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.6
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.34
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.27
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.26
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.24
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.86
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.76
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.58
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.84
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.18
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.93
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.73

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=323.25  Aligned_cols=382  Identities=16%  Similarity=0.152  Sum_probs=307.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHH
Q 003991           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (781)
Q Consensus        43 ~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  121 (781)
                      ++.+|+.|+|++|+..|+++++.+ .++.++.++|.+++++|++++|+..++++++++|+++.+++.+|.+|..+|++++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            567899999999999999999999 5678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHccccccccccccccCCCccccCCCCCCCCCCcccccCCCCCcccccc
Q 003991          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (781)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (781)
                      |+..|.+++...|.................            .                                     
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-------------------------------------  116 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVAAG------------D-------------------------------------  116 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHS------------C-------------------------------------
T ss_pred             cccccccccccccccccccccccccccccc------------c-------------------------------------
Confidence            999999996665555433211100000000            0                                     


Q ss_pred             cCCcccccccccCCCCCCCCCCCCccCCCCCcccccCcccccCCccccccccCCCCCCCCCcccccCccccccccCCCcc
Q 003991          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (781)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (781)
                                                             .                                        
T Consensus       117 ---------------------------------------~----------------------------------------  117 (388)
T d1w3ba_         117 ---------------------------------------M----------------------------------------  117 (388)
T ss_dssp             ---------------------------------------S----------------------------------------
T ss_pred             ---------------------------------------c----------------------------------------
Confidence                                                   0                                        


Q ss_pred             cCCCCCCcccccccccCcccCCcccccccccCCcccCCCCCcchhhhhccccccCCCCCchhhhhhhhhhhHhhHHhhHH
Q 003991          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (781)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (781)
                                                                                                   .  
T Consensus       118 -----------------------------------------------------------------------------~--  118 (388)
T d1w3ba_         118 -----------------------------------------------------------------------------E--  118 (388)
T ss_dssp             -----------------------------------------------------------------------------S--
T ss_pred             -----------------------------------------------------------------------------c--
Confidence                                                                                         0  


Q ss_pred             HHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 003991          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (781)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (781)
                         .............+.........+......+....+...+.+.+...|+++.++..+|.++...|++++|...++++
T Consensus       119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  195 (388)
T d1w3ba_         119 ---GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             ---HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ---ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHH
Confidence               00001112223345566777777778888888888888888888888888888888888888888888888888888


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (781)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  521 (781)
                      +..+|++..++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus       196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T d1w3ba_         196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             HHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      .+|.++...|++++|+..++.++...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 003991          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (781)
                      ++|+..|+++++++|+++.++.++|.+|.++|+
T Consensus       356 ~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            888888888888888888888888888877775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=304.76  Aligned_cols=294  Identities=20%  Similarity=0.219  Sum_probs=206.7

Q ss_pred             hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 003991          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (781)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (781)
                      ....+.........+......+.+..+...........+.........+......+....+...+.+.+...|++..++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (388)
T d1w3ba_          94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS  173 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHH
Confidence            34455566666666666666666666666666666666666666666666666677777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003991          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (781)
Q Consensus       454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  533 (781)
                      .+|.++...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|.....+..+|.++...|++
T Consensus       174 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  253 (388)
T d1w3ba_         174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI  253 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Q 003991          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (781)
Q Consensus       534 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (781)
                      ++|+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.+...+..+|.++...|++++|+..|+++++
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  333 (388)
T d1w3ba_         254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHh
Q 003991          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS  674 (781)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  674 (781)
                      .+|+++.+++.+|.+|..+|++++|+.+|+++++++|++++       +++.+|.++..+|
T Consensus       334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~-------a~~~lg~~~~~~~  387 (388)
T d1w3ba_         334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-------AYSNMGNTLKEMQ  387 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH-------HHHHHHHHHHHTC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcC
Confidence            77777777777777777777777777777777777777766       4455555555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-26  Score=239.22  Aligned_cols=256  Identities=19%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (781)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|.++++++|++...+..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            33446789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (781)
Q Consensus       460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  539 (781)
                      ...|++++|+..+++++...|................                   ...........+...+.+.+|+..
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHHHHHHHH
Confidence            9999999999999999999887543221111000000                   000000011112223344445555


Q ss_pred             HHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC
Q 003991          540 HLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       540 ~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (781)
                      |.+++..+|+.  +.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  238 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG  238 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence            55555554432  3444555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ++.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            5555555555555555555555555555555555444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-26  Score=234.85  Aligned_cols=251  Identities=16%  Similarity=0.117  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 003991          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (781)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (781)
                      ...+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34567888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (781)
Q Consensus       496 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (781)
                      .|++++|+..+++++...|...............                   ............+...+.+.+|+..|.
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence            8888888888888888888764332111110000                   000011112223345567889999999


Q ss_pred             HHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          576 QVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       576 ~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      +++..+|+  ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+.+|+++++++|+++
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            99999886  4778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHhh
Q 003991          654 EKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (781)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  685 (781)
                      .++..+|.+++..+..-.+...+.+|+.....
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            99999999999998887788888888886544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.3e-23  Score=208.98  Aligned_cols=221  Identities=13%  Similarity=0.128  Sum_probs=159.9

Q ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHH
Q 003991          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADIL  486 (781)
Q Consensus       408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~  486 (781)
                      +..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            34456666777777777777777777777777777777777777777777777765 37777777777777777777777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Q 003991          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (781)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  566 (781)
                      ..+|.++...|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..+|.++|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777766655


Q ss_pred             ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--CHHHHHHHHHHH
Q 003991          567 ------SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYLRASCY  629 (781)
Q Consensus       567 ------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~  629 (781)
                            +++|+..+.+++..+|++..+|..++.++... ...++...++.++++.|+  ++.++..++.+|
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence                  46677777777777777777777777665443 356666677766666554  344444444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-22  Score=203.04  Aligned_cols=220  Identities=15%  Similarity=0.129  Sum_probs=201.8

Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      .|...+++..+|.++...+.+++|+.+++++++.+|++..+|..+|.++...| ++++|+.+++++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            45567888889999999999999999999999999999999999999999987 59999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Q 003991          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE---  532 (781)
Q Consensus       456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---  532 (781)
                      |.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..+|.++|.++...+.   
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776   


Q ss_pred             ---HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 003991          533 ---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHG  597 (781)
Q Consensus       533 ---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~  597 (781)
                         +++|+..+.+++..+|++..+|..++.++... ...++...++.++.+.|+  ++.++..++.++..
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence               68999999999999999999999999987654 468899999999888775  45566666666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=4.1e-23  Score=213.59  Aligned_cols=265  Identities=11%  Similarity=0.005  Sum_probs=239.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 003991          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (781)
Q Consensus       395 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (781)
                      +..++|+.+++++++.+|++..+|..++.++...          |++++|+.+++++++.+|++..+|..+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            3458999999999999999999998888776654          448999999999999999999999999999988765


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003991          465 --SVEAIQDLSKALEFEPNSADIL-HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (781)
Q Consensus       465 --~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (781)
                        +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++..+|++++|+..+.
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              8999999999999999998876 5678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Q 003991          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (781)
Q Consensus       542 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (781)
                      +++...|.....+.    .+...+..+++...+.+++...|.....+..+|.++...|++.+|+..+.+++..+|.+..+
T Consensus       203 ~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  278 (334)
T d1dcea1         203 LPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT  278 (334)
T ss_dssp             SCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence            99988887665444    34556788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      +..+|.++..+|++++|+.+|+++++++|+....|..++..+
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            999999999999999999999999999999888666554443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-21  Score=201.91  Aligned_cols=261  Identities=11%  Similarity=0.005  Sum_probs=233.4

Q ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 003991          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (781)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (781)
                      .+..++|+.++++++..+|++..+|..++.++...          |++++|+.+++++++.+|++..+|..+|.++...+
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            34458999999999999999999998887776654          34889999999999999999999999999988876


Q ss_pred             C--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          498 D--FNAAVEDLSACVKLDKENKSAY-TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       498 ~--~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      +  +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|+..+
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4  8999999999999999998886 467889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ++++...|.....+.    .+...+..++|...+.+++...|.+...+..+|.++...|++.+|+..+.+++..+|++..
T Consensus       202 ~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  277 (334)
T d1dcea1         202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL  277 (334)
T ss_dssp             SSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHH
Confidence            988888776554443    3456678889999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCCcccHHHHHH
Q 003991          655 KFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK  699 (781)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  699 (781)
                             +++.+|.++...+++++|+.+|+++.+++|....||..
T Consensus       278 -------~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~  315 (334)
T d1dcea1         278 -------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  315 (334)
T ss_dssp             -------HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence                   66666777888999999999999999999999999854

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-19  Score=179.38  Aligned_cols=203  Identities=20%  Similarity=0.144  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003991          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (781)
Q Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  529 (781)
                      .+++.+|.+|...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            35555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HCCCHHHHH
Q 003991          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH----GLGQHKKAI  605 (781)
Q Consensus       530 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----~~g~~~~A~  605 (781)
                      +|++++|+..|+++++.+|.+......++..+...+..+.+...........+.... + .+...+.    ..+.+..+.
T Consensus       118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  195 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG-W-NIVEFYLGNISEQTLMERLK  195 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH-H-HHHHHHTTSSCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh-h-hHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555544444443333333333332211 1 1111111    112234444


Q ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ..+.......|....+++.+|.+|..+|++++|+.+|++++..+|++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            4444445555566677788888888888888888888888888887643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.4e-20  Score=181.35  Aligned_cols=220  Identities=19%  Similarity=0.169  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          397 YASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (781)
Q Consensus       397 ~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  472 (781)
                      .+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++..+|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            3444555555554322    233456666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Q 003991          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (781)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  552 (781)
                      +++++++|+++.++..+|.++...|++++|+..++++++.+|.+......++..+...+..+.+...........+....
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG  174 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh
Confidence            66666666666666666666666666666666666666666666655555555555555544444444443333332211


Q ss_pred             HHHHHHHHH----HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC
Q 003991          553 AWGHLTQFY----QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (781)
Q Consensus       553 ~~~~la~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (781)
                      .  .+...+    ...+....+...+.......|....+++.+|.++...|++++|+.+|++++..+|++
T Consensus       175 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         175 W--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             H--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            0  011111    112223444444444444555556667777777777777777777777777777765

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.6e-18  Score=178.58  Aligned_cols=302  Identities=15%  Similarity=0.056  Sum_probs=245.4

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Q 003991          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----  448 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  448 (781)
                      ..++....+|.+++..|++++|+.+++++++..|.+     ..++..+|.++...|++++|+..|++++...+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            346778889999999999999999999999999886     3578889999999999999999999999865432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---
Q 003991          449 -GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---  516 (781)
Q Consensus       449 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~---  516 (781)
                       ..++..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+..   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence             456788999999999999999999999875321        13467789999999999999999999999886643   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 003991          517 --KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (781)
Q Consensus       517 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  584 (781)
                        ..++...+..+...+++.++...+.++....+       ....++..++.++...|++++|...+++++...+.+   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence              46778889999999999999999999887643       235677888999999999999999999998876654   


Q ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCc--HHH
Q 003991          585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS--MEK  655 (781)
Q Consensus       585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~  655 (781)
                       ...+..+|.++...|++++|+..+++++..      .|....++..+|.+|..+|++++|+..+++++++.+..  ...
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~  329 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH  329 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHH
Confidence             456778999999999999999999999843      44556789999999999999999999999999986532  222


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhHH
Q 003991          656 FVLQCLAFYQKEIALYTASKINSEF  680 (781)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~A~  680 (781)
                      +...+.........+...++.+++.
T Consensus       330 ~~~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         330 FVIEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHH
Confidence            2222333333344444455555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.7e-16  Score=162.97  Aligned_cols=277  Identities=13%  Similarity=0.004  Sum_probs=229.9

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 003991          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----  482 (781)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  482 (781)
                      .+++....+|.++...|++++|+.++++++...|.+     ..++..+|.++...|++++|+..|++++...+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            346777889999999999999999999999999876     3478889999999999999999999999875432     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----
Q 003991          483 -ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----  549 (781)
Q Consensus       483 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----  549 (781)
                       ...+..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+.    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence             456788999999999999999999999875321        2346778999999999999999999999987553    


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---
Q 003991          550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---  618 (781)
Q Consensus       550 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  618 (781)
                       ...++...+..+...+++.++...+.++....+.       ...++..++.++...|++++|...+++++...|.+   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence             3667888899999999999999999998865432       24467788999999999999999999999887754   


Q ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhcCCC
Q 003991          619 -IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (781)
Q Consensus       619 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  690 (781)
                       ...+..+|.++...|++++|...+++++....... .....+.++..+|..+...|++++|+..|.++..+.
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence             45678899999999999999999999986543211 111234467778888889999999999998887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-16  Score=133.59  Aligned_cols=111  Identities=20%  Similarity=0.203  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 003991           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (781)
Q Consensus        36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  114 (781)
                      ..+.+.+|+.+|..|+|++|+.+|+++|.++ .++.+++++|.+++.+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            3456789999999999999999999999999 667889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 003991          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (781)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  146 (781)
                      .+|++++|+.+|++++++.|+.+.....+..+
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999998777665444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.66  E-value=1.3e-15  Score=135.99  Aligned_cols=118  Identities=20%  Similarity=0.105  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-----------------hhhhhhHHHHHHhhhCHHHHHHHHHHH
Q 003991           33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------------IQDICNRAFCYSQLELHKHVIRDCDKA   95 (781)
Q Consensus        33 ~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-----------------~~~~~~rA~~~~~~~~~~~A~~~~~~a   95 (781)
                      ...+...+..|+.+|..|+|.+|+..|++||+..+.                 ..+++|+|.||+++|+|++|+.+|++|
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            367788899999999999999999999999976411                 134789999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (781)
Q Consensus        96 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  150 (781)
                      |+++|+++++|+++|.++..+|++++|+.+|++++++.|+.+.....+..+...+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988876665554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=4.1e-16  Score=147.23  Aligned_cols=104  Identities=22%  Similarity=0.336  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      |++...+..|+.+|..|+|++|+.+|++||+++ .++.+++++|.||.++|+|++|+..|++||+++|+++.+|+++|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            678889999999999999999999999999999 7788899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCCh
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                      |..+|++++|+..|++|+++.|...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999987776543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.3e-15  Score=133.84  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 003991           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (781)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~  112 (781)
                      ..+.+.+.+|+.+|+.|+|++|+.+|+++|+++ .++..++++|.+++.+|++++|+..|+++|+++|+++.+|+.+|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            567788899999999999999999999999999 6677799999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 003991          113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (781)
Q Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  147 (781)
                      +..+|++++|+.+|++++.+.|..+.....+.++.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999987765554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.5e-14  Score=142.65  Aligned_cols=192  Identities=10%  Similarity=-0.078  Sum_probs=166.8

Q ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 003991          463 GESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAH  540 (781)
Q Consensus       463 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~  540 (781)
                      +..++|...|++++.. .|.+...|..++.++...|+++.|...|++++...|.+. .+|..++......|+++.|...|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3467888888888874 678888888899999999999999999999998888764 47888888999999999999999


Q ss_pred             HHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-
Q 003991          541 LKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-  618 (781)
Q Consensus       541 ~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  618 (781)
                      .++++..|.....+...+..... .|+.+.|..+|++++...|+++..|...+..+...|+++.|..+|++++...|.+ 
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            99999999998888888877544 5889999999999999999999999999999999999999999999999987654 


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          619 ---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       619 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                         ..+|..........|+.+.+..+++++.++.|+...
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence               357888888888899999999999999999987643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.5e-16  Score=169.22  Aligned_cols=226  Identities=8%  Similarity=0.026  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003991          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (781)
Q Consensus       399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  478 (781)
                      +|+++|+++++..|+.+.+++.+|.++...|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            456666666666666666666666666666666554   5666666665444332222111  11234455555555543


Q ss_pred             CC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Q 003991          479 EP--NS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (781)
Q Consensus       479 ~p--~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  555 (781)
                      ..  +. ......++.+....+.|+.|+..+.+++.++|.+...+..+|.++...|++++|+..+.+++..+|.  .++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHH
Confidence            22  11 1112223444444555666666666666666666666666666666666666666666666554442  4555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      ++|.++...|++++|+.+|++++.++|+++.+|+.+|.++...|++.+|+.+|.+++...|..+.++.+++.++.+
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666655544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-15  Score=133.81  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----------------hhhhhhHHHHHHhhhCHHHHHHHH
Q 003991           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE----------------IQDICNRAFCYSQLELHKHVIRDC   92 (781)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~----------------~~~~~~rA~~~~~~~~~~~A~~~~   92 (781)
                      +++....+...+.+|+.+|..|+|++|+.+|.++|...+.                ...+.|+|.||+++|+|++|+..|
T Consensus         6 ~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~   85 (170)
T d1p5qa1           6 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC   85 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchh
Confidence            4445567888899999999999999999999999988521                133779999999999999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 003991           93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (781)
Q Consensus        93 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  148 (781)
                      ++||.++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+.....+..+..
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888766655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-14  Score=133.23  Aligned_cols=129  Identities=23%  Similarity=0.242  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 003991          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (781)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (781)
                      +.|..+...|++++|+..|.+   +.|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            456666677777777766654   24445666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhhccCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcH
Q 003991          602 KKAIKDLSSGLGIDPSN----------------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (781)
Q Consensus       602 ~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  653 (781)
                      ++|+..|++++...+.+                .++++++|.++..+|++++|++.+.+++++.|+..
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            77777777776543322                47889999999999999999999999999998753

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-14  Score=122.13  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +.-+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..+.+++.++|+++.+|+.+|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            34456778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (781)
                      .+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888888888888888888888877664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.7e-14  Score=144.34  Aligned_cols=167  Identities=14%  Similarity=0.062  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcc------cH
Q 003991          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSS-IGEYKKAEEAHLKAIQLDRN------FL  551 (781)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~------~~  551 (781)
                      ++..+|.+|...|++++|+.++++++.+.+..      ..++..+|.++.. .|++++|+..|++++++.+.      ..
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            34444444444444444444444444432222      2344445555533 45666666666665554321      13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH----
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----  620 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----  620 (781)
                      .++..+|.++...|++++|+..|++++...+...       ..+...+.++...|++..|...++++++.+|..+.    
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~  238 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence            4456666666666666666666666666555432       34455666666667777777777777666664322    


Q ss_pred             -HHHHHHHHHHH--hCCHHHHHHHHHHHHhhccC
Q 003991          621 -CLYLRASCYHA--IGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       621 -~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~  651 (781)
                       ....+..++..  .+.+++|+..|.++.+++|.
T Consensus       239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence             23334444333  23466777777666666553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.1e-14  Score=140.37  Aligned_cols=223  Identities=8%  Similarity=-0.049  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Q 003991          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ--------------RELEAAISDFTEAIQS-NPSAGEAWKRRGQARAA  461 (781)
Q Consensus       397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~  461 (781)
                      ...+..+|++++...|.++.+|+..+..+...              +..++|...|++++.. .|.+...|..++.+...
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35577789999999999999998887765443              3468899999999974 78888999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q 003991          462 LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS-SIGEYKKAEEA  539 (781)
Q Consensus       462 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~  539 (781)
                      .|+++.|...|++++...|.+ ..+|..++......|+++.|...|.+++...|.....+...+.... ..|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            999999999999999999976 4578999999999999999999999999999999999988887754 46899999999


Q ss_pred             HHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC
Q 003991          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (781)
Q Consensus       540 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (781)
                      |++++...|.++..|...+..+...|+++.|..+|++++...|.+    ...|..........|+.+.+..+++++.+..
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999987754    3477777888888899999999999999988


Q ss_pred             CCCH
Q 003991          616 PSNI  619 (781)
Q Consensus       616 p~~~  619 (781)
                      |...
T Consensus       272 ~~~~  275 (308)
T d2onda1         272 REEY  275 (308)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            8753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.1e-14  Score=145.83  Aligned_cols=200  Identities=15%  Similarity=0.054  Sum_probs=148.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHH
Q 003991          490 GIVNFKFKDFNAAVEDLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHL  557 (781)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l  557 (781)
                      |.+|...++|++|+.+|.+++.+.      +.....+..+|.+|...|++++|+..+++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            555666666666666666666542      1124577889999999999999999999999986654      5678889


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH-------HHHH
Q 003991          558 TQFYQD-LANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------ECLY  623 (781)
Q Consensus       558 a~~~~~-~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~  623 (781)
                      |.++.. .|++++|+.+|++++.+.+.      ...++..+|.++..+|+|++|+..|++++...+.++       ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            988866 69999999999999876432      245688999999999999999999999999877653       4677


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH--HHhchhhHHHHHhhhcCCCc
Q 003991          624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY--TASKINSEFCWFDIDGDIDP  691 (781)
Q Consensus       624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~p  691 (781)
                      ..+.++...|++..|...++++++++|..+...-..  .......++.  ....+.+|+..|+.+..++|
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~--~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN--FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HH--HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence            889999999999999999999999999876543211  1112212222  24568899999988888886

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.60  E-value=1.1e-14  Score=132.26  Aligned_cols=119  Identities=19%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc----------------chhhhhhHHHHHHhhhCHHHHHHHHHHH
Q 003991           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----------------EIQDICNRAFCYSQLELHKHVIRDCDKA   95 (781)
Q Consensus        32 ~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~----------------~~~~~~~rA~~~~~~~~~~~A~~~~~~a   95 (781)
                      ....+...|.+|+.+|..|+|++|+.+|++||...+                ....|.|+|.||+++|+|.+|+.+|+++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            335678889999999999999999999999996531                1123779999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (781)
Q Consensus        96 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  150 (781)
                      |.++|+++++|+++|.++..+|++++|+.+|++++++.|+.+.....+..+....
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998877665555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.3e-16  Score=169.41  Aligned_cols=224  Identities=10%  Similarity=-0.051  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 003991          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (781)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  512 (781)
                      +|+++|++|+++.|+.++++..+|.++...|++++|   |++++..+|+........+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999876   8999999987655543333222  22356788888887765


Q ss_pred             CC--CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003991          513 DK--ENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (781)
Q Consensus       513 ~p--~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (781)
                      ..  +.. .....++.+....+.|+.|+..+.+++..+|.+...+..+|..+...|++++|+..+.+++..+|  ..++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            42  222 22334566677788899999999999999999999999999999999999999999999988776  46888


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 003991          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (781)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  663 (781)
                      .+|.++...|++++|+.+|++++.++|+++.++.++|.++...|++.+|+.+|.+++..+|..+.++.+++..+
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=2.5e-14  Score=130.18  Aligned_cols=125  Identities=19%  Similarity=0.275  Sum_probs=108.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------------cchhhhhhHHHHHHhhhCHHHH
Q 003991           26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------------YEIQDICNRAFCYSQLELHKHV   88 (781)
Q Consensus        26 ~~~~~~~~~~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-----------------~~~~~~~~rA~~~~~~~~~~~A   88 (781)
                      +.+.+.....+...+..++.+|..|+|++|+..|+++|+..                 .....+.|+|.|+.++|+|++|
T Consensus        17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   96 (169)
T d1ihga1          17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA   96 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchh
Confidence            44556666667778899999999999999999999998642                 2333478999999999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 003991           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (781)
Q Consensus        89 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  150 (781)
                      +..|++||+++|+++++|+++|.+|..+|++++|+..|++++++.|+.+.....+..+....
T Consensus        97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          97 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988776665554433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.6e-14  Score=124.80  Aligned_cols=125  Identities=21%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      ++.+..+|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCCHHHHHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVED  505 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~A~~~  505 (781)
                      .+|++++|+..+++++.+.|+++.++..++.+..  ..+.+++|+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999988888877766643  33345555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-13  Score=128.15  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      .++..|..++..|+|++|++.|.++   .|.++.+++++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            4567799999999999999999864   5667889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 003991          463 GESVEAIQDLSKALEFEPNS----------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (781)
Q Consensus       463 g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~  516 (781)
                      |++++|+..|++++...+.+                ..+++++|.++...|++++|+..+.+++...|..
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999998865543                3556677777777777777777777777766653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-14  Score=121.30  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCCchh-------HH
Q 003991           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AY  106 (781)
Q Consensus        35 ~~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~~~~-------a~  106 (781)
                      .+...|..|+.+|..|+|++|+.+|+++|+++ .++.+++++|.+|.++|+|++|+.+|++||+++|++..       +|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46778899999999999999999999999999 66888999999999999999999999999999998754       77


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 003991          107 ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (781)
Q Consensus       107 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  143 (781)
                      +++|.++..++++++|+..|++++...+. +..+..+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            78899999999999999999999887764 3344333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.6e-13  Score=129.11  Aligned_cols=105  Identities=16%  Similarity=0.214  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 003991          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (781)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (781)
                      ...+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|+.+|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHHHHHhhccCcHHH
Q 003991          631 AIGEYREAIKDYDAALDLELDSMEK  655 (781)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~  655 (781)
                      .+|++++|+..|+++++++|++...
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHH
Confidence            8888888888888888888765443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.43  E-value=3.2e-11  Score=118.40  Aligned_cols=225  Identities=18%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003991          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERG  490 (781)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  490 (781)
                      |.+++.+|..+...+++++|+.+|+++.+.  .+..+++.+|.+|..    ..++..|..++..+....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            344444444444444444444444444332  234444444444443    334444444444444322  334444444


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 003991          491 IVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (781)
Q Consensus       491 ~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  562 (781)
                      .++..    ..+.+.|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...+..+|.++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence            44332    2344455555555444322  3333334433332    2334445555544433  234455556666655


Q ss_pred             H----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH---
Q 003991          563 D----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA---  631 (781)
Q Consensus       563 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  631 (781)
                      .    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  +++.+++.+|.+|..   
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSS
T ss_pred             cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCC
Confidence            4    3455566666666553  3456677777766665    55677777777777665  356777777777764   


Q ss_pred             -hCCHHHHHHHHHHHHhhccC
Q 003991          632 -IGEYREAIKDYDAALDLELD  651 (781)
Q Consensus       632 -~g~~~~A~~~~~~al~~~p~  651 (781)
                       ..++++|..+|++|.+..+.
T Consensus       230 ~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         230 VTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCH
T ss_pred             CccCHHHHHHHHHHHHHCcCH
Confidence             33677777777777766543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.42  E-value=6.3e-11  Score=116.27  Aligned_cols=226  Identities=17%  Similarity=0.143  Sum_probs=189.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRR  455 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (781)
                      +|++++.+|..++..+++.+|+++|+++.+.  .++.+++.+|.+|..    ..++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4789999999999999999999999999765  578999999999998    67999999999998864  467778888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003991          456 GQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (781)
Q Consensus       456 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  527 (781)
                      |.++..    ..+.+.|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...+..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence            888775    4688999999999988654  5666677776664    4567788888877654  56678889999999


Q ss_pred             HH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 003991          528 SS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (781)
Q Consensus       528 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--  597 (781)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+++.+|.+|..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence            86    5667888888888875  4578999999999987    67999999999999876  568999999999986  


Q ss_pred             --CCCHHHHHHHHHHhhccCCC
Q 003991          598 --LGQHKKAIKDLSSGLGIDPS  617 (781)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~  617 (781)
                        ..++++|+.+|+++......
T Consensus       229 g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCccCHHHHHHHHHHHHHCcCH
Confidence              45899999999999887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-12  Score=115.16  Aligned_cols=87  Identities=20%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      .++.++|.+|...|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35667777777888888888888888888887788888888888888888888888888888888777777777777766


Q ss_pred             hCCHHHH
Q 003991          632 IGEYREA  638 (781)
Q Consensus       632 ~g~~~~A  638 (781)
                      .++..+.
T Consensus       143 ~~~~~~~  149 (170)
T d1p5qa1         143 IRRQLAR  149 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.5e-13  Score=110.99  Aligned_cols=106  Identities=13%  Similarity=0.019  Sum_probs=94.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc-cchhhhhhHHHHHHh---hhCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHH
Q 003991           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQ---LELHKHVIRDCDKALQLDPTL--LQAYILKGCAFSA  115 (781)
Q Consensus        42 ~~~~~~~~g~~~~A~~~y~~ai~~~-~~~~~~~~rA~~~~~---~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~  115 (781)
                      .++.++..++|++|.+.|.+++.++ .++.+++|.|.++++   .+++++|+..+++++..+|+.  +.+++.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            5678899999999999999999999 778889999999986   567788999999999999866  5599999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 003991          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (781)
Q Consensus       116 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  147 (781)
                      +|++++|+.+|+++|++.|+.+.+......+.
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            99999999999999999999988765544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=1.9e-12  Score=107.98  Aligned_cols=94  Identities=19%  Similarity=0.056  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 003991          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (781)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (781)
                      .++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHH
Q 003991          633 GEYREAIKDYDAAL  646 (781)
Q Consensus       633 g~~~~A~~~~~~al  646 (781)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888888887765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=3e-12  Score=106.74  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 003991          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (781)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (781)
                      ..+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 003991          463 GESVEAIQDLSKAL  476 (781)
Q Consensus       463 g~~~~A~~~~~~al  476 (781)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999998888865

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.8e-12  Score=106.59  Aligned_cols=107  Identities=15%  Similarity=0.022  Sum_probs=86.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccCCCC--HHHHHHHHHHHH
Q 003991          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSN--IECLYLRASCYH  630 (781)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~  630 (781)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            46667778888888888888888888888888888888887654   4456888888888887754  457888999999


Q ss_pred             HhCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 003991          631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (781)
Q Consensus       631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  662 (781)
                      .+|++++|+.+|+++++++|++..+...+..+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999888866555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-12  Score=111.11  Aligned_cols=108  Identities=13%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 003991          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ  665 (781)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  665 (781)
                      ..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|+++..+..++.+++.
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            35668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhhHHHHHhhhcCCCccc
Q 003991          666 KEIALYTASKINSEFCWFDIDGDIDPLF  693 (781)
Q Consensus       666 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  693 (781)
                      +|..+...+++++|+.+|.++...+|..
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            9999999999999999999988776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.35  E-value=1.4e-11  Score=111.27  Aligned_cols=95  Identities=23%  Similarity=0.284  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 003991          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (781)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (781)
                      .++.++|.+|..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|.+++.++|+++.++..++.+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777766665


Q ss_pred             hCCHHH-HHHHHHHHH
Q 003991          632 IGEYRE-AIKDYDAAL  646 (781)
Q Consensus       632 ~g~~~~-A~~~~~~al  646 (781)
                      .+.+.+ ..+.|.+.+
T Consensus       145 ~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         145 AKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            554433 333444333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=1.1e-11  Score=112.27  Aligned_cols=82  Identities=21%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      .|....++.++|.++.++|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...+.
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555554444


Q ss_pred             HH
Q 003991          661 LA  662 (781)
Q Consensus       661 ~~  662 (781)
                      .+
T Consensus       153 ~~  154 (169)
T d1ihga1         153 KV  154 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.33  E-value=1.4e-11  Score=109.14  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +..+...|..++..|+|.+|+..|++++...+......             +.........+     ...++.++|.+|.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~~   78 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHHH
Confidence            45567789999999999999999999998765422100             00000000000     1124556666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  530 (781)
                      .+|++++|+..+.++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..++
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666665555433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.27  E-value=5.4e-12  Score=112.50  Aligned_cols=102  Identities=19%  Similarity=0.130  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-------------hhhhhhHHHHHHhhhCHHHHHHHHHHHHhcCCC-
Q 003991           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYE-------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT-  101 (781)
Q Consensus        36 ~~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~-------------~~~~~~rA~~~~~~~~~~~A~~~~~~al~~~p~-  101 (781)
                      +-.....++..|..|+|++|+..|+++|+++++             ..+|.|+|.+|..+|+|++|+.+++++|.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            334445688899999999999999999998732             235889999999999999999999999987643 


Q ss_pred             ----------chhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 003991          102 ----------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (781)
Q Consensus       102 ----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  137 (781)
                                ...+++++|.+|..+|++++|+.+|++|+++.|+.+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      455899999999999999999999999998866554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=7.6e-12  Score=109.54  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 003991          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (781)
Q Consensus       494 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  573 (781)
                      .+.+.|++|+..|+++++++|+++.++.++|.++...+++..+.+                        ..+.+++|+..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~~   63 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAITK   63 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHHH
Confidence            344555555555555555555555555555555554333322211                        11223444555


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 003991          574 LQQVLYIDKRFSKAYHLRGLLLHGLG-----------QHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (781)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (781)
                      |+++++++|+++.+++++|.+|..+|           .+++|+.+|+++++++|++..++..++.+.
T Consensus        64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            55555555555555555554444433           245555555555555555555555555444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=2e-11  Score=106.75  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 003991          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (781)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (781)
                      +.+.+.|++|+..|+++++.+|+++.+++.+|.++...++          +++|+..|+++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            4456678888888998888889888888888888876544          455666666666666666666666666665


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003991          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (781)
Q Consensus       461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  535 (781)
                      .+|++.             +.          .....+.+++|+.+|++++.++|++..++..++.+....+.+.+
T Consensus        87 ~~g~~~-------------~~----------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          87 SFAFLT-------------PD----------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHC-------------CC----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             Hcccch-------------hh----------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            543210             00          00001124556666666666666666666666555544444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.02  E-value=1.9e-10  Score=102.28  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC--------
Q 003991          558 TQFYQDLANSEKALECLQQVLYIDKRF------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--------  617 (781)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  617 (781)
                      |..++..|+|++|+..|++++.+.|+.            ..+|.++|.+|..+|++++|+..+++++.+.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            666667777777777777777766543            356788888899999999999888888876331        


Q ss_pred             ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          618 ---NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       618 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                         ...+++++|.+|..+|++++|+..|++++++.|+...
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence               1347889999999999999999999999999876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-09  Score=85.37  Aligned_cols=77  Identities=9%  Similarity=-0.062  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  657 (781)
                      ++-++.+|.++.+.|+|.+|+.+|++++++.|.       ...++.++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            344566666666666666666666666655332       2466777777777777777777777777777777777655


Q ss_pred             HHHH
Q 003991          658 LQCL  661 (781)
Q Consensus       658 ~~~~  661 (781)
                      +++.
T Consensus        85 Nl~~   88 (95)
T d1tjca_          85 NLKY   88 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5533

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.4e-09  Score=85.45  Aligned_cols=81  Identities=15%  Similarity=0.025  Sum_probs=59.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 003991          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (781)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (781)
                      +++.++.+|..++..|+|.+|+..|+++++..|.+       ..++..+|.++...|++++|+.+++++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            46667788888888888888888888887764432       46677777777777777777777777777777777777


Q ss_pred             HHHHHHHH
Q 003991          453 KRRGQARA  460 (781)
Q Consensus       453 ~~la~~~~  460 (781)
                      .+++.+..
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=1.9e-08  Score=90.62  Aligned_cols=94  Identities=13%  Similarity=0.049  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-----------------------hhhhhHHHHHHhhhCHHHHHHHHH
Q 003991           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-----------------------QDICNRAFCYSQLELHKHVIRDCD   93 (781)
Q Consensus        37 ~~~r~~~~~~~~~g~~~~A~~~y~~ai~~~~~~-----------------------~~~~~rA~~~~~~~~~~~A~~~~~   93 (781)
                      ......+..++..|++++|+..|++|+.+.+.+                       .++.+++.++..+|++++|+..|+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            445577889999999999999999999986221                       235688999999999999999999


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003991           94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (781)
Q Consensus        94 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  130 (781)
                      ++++++|.+..+|..++.++..+|++++|+..|+++.
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999983

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=3.8e-09  Score=101.72  Aligned_cols=130  Identities=12%  Similarity=0.016  Sum_probs=106.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003991          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (781)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (781)
                      .-....|++++|+..++++++.+|++..++..++.++...|++++|+..|+++++++|++..++..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            34556788888999999988888988888889999998899999999999999888888888888888888777777766


Q ss_pred             HHHHHHhhcc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHH
Q 003991          605 IKDLSSGLGI-DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (781)
Q Consensus       605 ~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  654 (781)
                      ...+.+.... .|.....+...+.++...|++++|...++++.++.|+.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            6555443333 4555677788899999999999999999999999998765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.76  E-value=6.4e-09  Score=100.06  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=91.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 003991          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (781)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  467 (781)
                      +...+..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            44566778888888888888888888888888888888888888888888888888888887777777777766655555


Q ss_pred             HHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 003991          468 AIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (781)
Q Consensus       468 A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~  517 (781)
                      +...+.+... ..|.....+...+..+...|++++|...+.++.+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            4443332222 2333345556666777777777777777777777766653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=4.1e-07  Score=81.60  Aligned_cols=116  Identities=9%  Similarity=-0.090  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 003991          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (781)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  563 (781)
                      ..+...|......|++++|+..|.+++.+.+........       .+.     -.......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~-----w~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQ-----FVEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TST-----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666665544211100       000     01112223334455677777777777


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 003991          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (781)
Q Consensus       564 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (781)
                      .|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            788888888888877777877777777777787888888777777776

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=2.2e-05  Score=63.21  Aligned_cols=78  Identities=19%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHCCC---HHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 003991          585 SKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (781)
Q Consensus       585 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  660 (781)
                      ..+.+..|+++.+..+   ..+|+..++.++..+|.+. ++++.+|..|.++|+|++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            6778888888886644   4688888988888888664 78899999999999999999999999999999887655444


Q ss_pred             HH
Q 003991          661 LA  662 (781)
Q Consensus       661 ~~  662 (781)
                      .+
T Consensus       115 ~I  116 (124)
T d2pqrb1         115 MV  116 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=4.3e-05  Score=61.50  Aligned_cols=80  Identities=11%  Similarity=0.037  Sum_probs=67.7

Q ss_pred             ccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 003991          379 ISVDFRLSRGIAQVNEG---KYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (781)
Q Consensus       379 ~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (781)
                      .+++..|..|.++....   +.++|+.+++++++.+|.+. ++++.+|..|+.+|+|++|..+++++++++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            45788999999998764   45689999999999998765 799999999999999999999999999999999887665


Q ss_pred             HHHH
Q 003991          455 RGQA  458 (781)
Q Consensus       455 la~~  458 (781)
                      .-.+
T Consensus       113 ~~~I  116 (124)
T d2pqrb1         113 KSMV  116 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=7e-05  Score=63.02  Aligned_cols=110  Identities=18%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHH
Q 003991          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKD  607 (781)
Q Consensus       532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  607 (781)
                      ++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            3445555555554432  2233333332  2235566666666666543  456666667766654    3456777777


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhc
Q 003991          608 LSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLE  649 (781)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  649 (781)
                      |+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.++.
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            7777654  456677777777765    346777777777777654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=0.00016  Score=60.75  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 003991          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQD  471 (781)
Q Consensus       396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  471 (781)
                      ++++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4556666666665543  3334444432  2234455555555555442  344445555555443    2344455555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 003991          472 LSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVK  511 (781)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~  511 (781)
                      |+++.+..  ++.+.+.+|.+|..    ..++.+|+.+|+++.+
T Consensus        82 ~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          82 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            55544432  34444444444443    2344444444444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.16  Score=51.68  Aligned_cols=207  Identities=11%  Similarity=-0.033  Sum_probs=111.6

Q ss_pred             HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHH
Q 003991          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------------------YPEALIGRGTARAFQRELEA  433 (781)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~g~~~~  433 (781)
                      ......|.++...+..+.+....|+..+|...+..+....+.                  .+..+..........|++..
T Consensus        93 ~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~  172 (450)
T d1qsaa1          93 AFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGL  172 (450)
T ss_dssp             HHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhh
Confidence            334556778888888888899999999988887766543222                  23334445555666666666


Q ss_pred             HHHHHHHH-------------HHhCCC-----------cHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003991          434 AISDFTEA-------------IQSNPS-----------AGE--AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (781)
Q Consensus       434 A~~~~~~a-------------l~~~p~-----------~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  487 (781)
                      |...+..+             +..+|.           +..  .....+.......+.+.|...+.......+.....+.
T Consensus       173 a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~  252 (450)
T d1qsaa1         173 VTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQ  252 (450)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHH
Confidence            55544321             111111           111  1122233333345666666666666555544433322


Q ss_pred             HHH----HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 003991          488 ERG----IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (781)
Q Consensus       488 ~la----~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  563 (781)
                      ...    ..+...+..+.+...+........+.. ....++......+++..+...+...-..........+-+|..+..
T Consensus       253 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~  331 (450)
T d1qsaa1         253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE  331 (450)
T ss_dssp             HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhhcccccchH-HHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHH
Confidence            222    222334555666666655544433332 222233334455677766666655433223345666777777777


Q ss_pred             cCCHHHHHHHHHHHHh
Q 003991          564 LANSEKALECLQQVLY  579 (781)
Q Consensus       564 ~g~~~~A~~~~~~al~  579 (781)
                      .|+.++|...|..+..
T Consensus       332 ~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         332 RGREAEAKEILHQLMQ  347 (450)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             cCChhhHHHHHHHHhc
Confidence            7777777777776643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.27  Score=49.82  Aligned_cols=124  Identities=10%  Similarity=-0.037  Sum_probs=83.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 003991          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH----LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (781)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (781)
                      .+..-....+.+.|...+.......+.....+..    ++..+...+..+.|...+........+.......++. ....
T Consensus       220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~  298 (450)
T d1qsaa1         220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGT  298 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHH
T ss_pred             HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHc
Confidence            3333444567888888887776655444333332    2333334566778888777776555444444444444 4556


Q ss_pred             CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 003991          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (781)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  647 (781)
                      +++..+...+...-......+...+.+|..+..+|+.++|...|..+..
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            8999998888876543344578889999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.07  E-value=0.45  Score=45.51  Aligned_cols=171  Identities=18%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 003991          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (781)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (781)
                      ..|..++..|.|+.|..+|...    .    -+-.+..++...+++..|...+.++     ++...|......+......
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~----~----d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHT----T----CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC----C----CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence            3456666777777777777642    1    1234455666777777777776655     4566666666666666555


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Q 003991          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA-I  544 (781)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l  544 (781)
                      .-+... ...   ...+++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-++.+... .
T Consensus        86 ~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~  160 (336)
T d1b89a_          86 RLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS  160 (336)
T ss_dssp             HHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred             HHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence            443211 000   11234444555666667777777777777777666666666666666665543 34444444332 1


Q ss_pred             hhCccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 003991          545 QLDRNF-------LEAWGHLTQFYQDLANSEKALECL  574 (781)
Q Consensus       545 ~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~  574 (781)
                      ..++..       ...|-.+..+|.+.|++++|+..+
T Consensus       161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence            111111       112344556666677777666544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.73  E-value=0.91  Score=43.23  Aligned_cols=243  Identities=15%  Similarity=0.042  Sum_probs=148.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 003991          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (781)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (781)
                      ...++...+++..|.+.+.+.     ++...|......+........|... ..   ....+++-.......|...|.++
T Consensus        46 l~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e  116 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFE  116 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChH
Confidence            445677888899988887765     5678888888888888777654221 11   11234555566778888999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 003991          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV-KLDKE-------NKSAYTYLGLALSSIGEYKKAEE  538 (781)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~p~-------~~~~~~~la~~~~~~g~~~~A~~  538 (781)
                      +.+.+++.++...+.+...+..++.+|.+.+ .++-.++++..- ..++.       ....|-.+..+|.+.|++++|+.
T Consensus       117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~  195 (336)
T d1b89a_         117 ELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  195 (336)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence            9999999999888888889989999887754 344444444321 11111       01123456777888888888876


Q ss_pred             HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHCCCHHHHHHHH
Q 003991          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----------YHLRGLLLHGLGQHKKAIKDL  608 (781)
Q Consensus       539 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~la~~~~~~g~~~~A~~~~  608 (781)
                      .+-.-    |.+..-....-.++.+..+.+..-+...-.+...|....-          ...+.....+.++..-...++
T Consensus       196 ~~i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~L  271 (336)
T d1b89a_         196 TMMNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL  271 (336)
T ss_dssp             HHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHH
T ss_pred             HHHHc----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHH
Confidence            65431    1111111122233444455444444444444444432211          122344455666666666666


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 003991          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (781)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  649 (781)
                      +....  .++..+...++.+|...++++.    +++.++..
T Consensus       272 e~v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~  306 (336)
T d1b89a_         272 RSVQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAY  306 (336)
T ss_dssp             HHHHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHC
T ss_pred             HHHHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHHh
Confidence            66544  3356789999999999999744    44444443