Citrus Sinensis ID: 003997

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780
MSSTAATTPSTVSNAGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKKNDAINEEEKASSNDDGKKVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPTQVPGSAHTPVQPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPRPSGMLPTQSTRSMGQMPAPQSPSFRMGAPNTAPQHIMQVPRPQVGNQMGQPHAQHTSAVPFARNPNAAFANVSPVSPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANPLPRNHPALPNRPERHMGLNQQFSNNRSGGPQIYDPFSPTSTSVPSQQQGGNPARARKPENDPEYEDLMASVGVK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccccEEEEEEccccHHHHHHHHHHccEEEEEEEccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccc
ccccccccccccccccccEcccccccccEEccccccccccccccccccccccccccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccEEEEEEEcccccHHHHHHHHcccEEEEEEcccEcccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccc
msstaattpstvsnagpkiskfaaksgfvipknklsgslvpvfkgakkndaineeekassnddgkkvvrktkwgpdlsldasVKRGRALAYQTRVDQIVQQLEsgsleaeenqvpevaaqnadqkspnpqvdrelECLELEKQEVIGEIlklnpsyrtppdykpllkeavvpipvkeypgynflglifgpasdtQKRLEKETRTVIKVYgtkadtgekveistsdanvqSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENvsalnqsqgdgaqflvpntfvnqgvpqpevgplqtplhgqfqsqtpwfpsgpsqnpmhplntsspilsnpvnmparfpstfktpslvppssqlqmqvppgpympqihsgaprnfpvpapqpssiqsnmpgshpftgiqpqptgpihigrpsmpslpqavssvgprplpdrplipagnltgwsgapanaaaslgssnlgqlahamgppqgsrpvfasappaaggtspafpaalrptqvpgsahtpvqpsphltmaaspvlsvsrptmpagtsgsfsgsitnfstmnlssataprpphpssgdftfqphqpqnpspltvprpsgmlptqstrsmgqmpapqspsfrmgapntapqhimqvprpqvgnqmgqphaqhtsavpfarnpnaafanvspvspttppsqmgprsfstgpqmhyppgpfpprpanplprnhpalpnrperhmglnqqfsnnrsggpqiydpfsptstsvpsqqqggnpararkpendpeyEDLMASVGVK
msstaattpstvsnagpkiSKFAAKSgfvipknklsgslvpvfkgakkndaineeekassnddgkkvvrktkwgpdlsldasvKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVaaqnadqkspnpqvDRELECLELEKQEVIgeilklnpsyrtppdYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKvygtkadtgekveistsdanvqsTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPTQVPGSAHTPVQPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPRPSGMLPTQSTRSMGQMPAPQSPSFRMGAPNTAPQHIMQVPRPQVGNQMGQPHAQHTSAVPFARNPNAAFANVSPVSPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANPLPRNHPALPNRPERHMGLNQQFSNNRSGGPQIYDPFSPTSTSvpsqqqggnpararkpendpeyedlmasvgvk
MsstaattpstvsnaGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKKNDAINEEEKASSNDDGKKVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWsgapanaaaslgssnlgqlaHAMGPPQGSRPVfasappaaggtspafpaaLRPTQVPGSAHTPVQPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPRPSGMLPTQSTRSMGQMPAPQSPSFRMGAPNTAPQHIMQVPRPQVGNQMGQPHAQHTSavpfarnpnaafanvspvspttppsQMGPRSFSTGPQMHYppgpfpprpanplprnhpalpnrpERHMGLNQQFSNNRSGGPQIYDPFsptstsvpsqqqGGNPARARKPENDPEYEDLMASVGVK
**************************GFVIP*******LVPV********************************************RALAYQTRVDQI**************************************CLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPAS*********TRTVIKVYGTKA**************VQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVS***************QFLVPNTFVN************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***********************A*SGFVIPKNKL*******************************************LDASVKRGRALAYQTRVDQIVQQ****************************QVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKV************************EEFHISISADSYEKVDAATDLIELLVT************************QSQGDGAQFLVPNT********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************MASVGV*
**************AGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKKNDAI*************KVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESG************************QVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSL*********RPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPT**********QPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNL*************GDFTFQPHQPQNPSPLTVPRPSGML*****************SFRMGAPNTAPQHIMQVPRPQV***********TSAVPFARNPNAAFANVS***************FSTGPQMHYPPGPFPPRPANPLPRNHPALPNRPERHMGLNQQFSNNRSGGPQIYDPFS************************PEYEDLMASVGVK
***********************************************************************KWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADT**************STYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWF****************************************************************NFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPT*VPGSAHTPVQPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPR*************************************************************************PVSPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANPLPRNHP********HMGL*********G*PQ******PT**************************DLMASVG**
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SSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSTAATTPSTVSNAGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKKNDAINEEEKASSNDDGKKVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFHISISADSYEKVDAATDLIELLVTSVSGSLAAISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDRPLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGPPQGSRPVFASAPPAAGGTSPAFPAALRPTQVPGSAHTPVQPSPHLTMAASPVLSVSRPTMPAGTSGSFSGSITNFSTMNLSSATAPRPPHPSSGDFTFQPHQPQNPSPLTVPRPSGMLPTQSTRSMGQMPAPQSPSFRMGAPNTAPQHIMQVPRPQVGNQMGQPHAQHTSAVPFARNPNAAFANVSPVSPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANPLPRNHPALPNRPERHMGLNQQFSNNRSGGPQIYDPFSPTSTSVPSQQQGGNPARARKPENDPEYEDLMASVGVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query780 2.2.26 [Sep-21-2011]
O74555587 Branchpoint-bridging prot yes no 0.261 0.347 0.265 3e-17
Q54BM5501 Branchpoint-bridging prot yes no 0.208 0.325 0.303 2e-15
Q4P0H7625 Branchpoint-bridging prot N/A no 0.285 0.356 0.240 8e-14
Q8NIW7607 Branchpoint-bridging prot N/A no 0.237 0.304 0.295 1e-13
Q6C187605 Branchpoint-bridging prot yes no 0.253 0.327 0.281 5e-13
Q64213653 Splicing factor 1 OS=Mus no no 0.214 0.255 0.302 6e-13
Q4WXV6566 Branchpoint-bridging prot yes no 0.238 0.328 0.274 8e-13
Q15637639 Splicing factor 1 OS=Homo yes no 0.214 0.261 0.302 9e-13
P0CO44546 Branchpoint-bridging prot yes no 0.285 0.408 0.259 1e-11
P0CO45546 Branchpoint-bridging prot N/A no 0.285 0.408 0.259 1e-11
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bpb1 PE=1 SV=1 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 41/245 (16%)

Query: 47  KKNDAINEEEKASSNDDGKKVVRKTKWG----------PDLSLDASVKRGRAL------A 90
           K N  ++       +  G++  RK  WG            + L+ +VK    +      +
Sbjct: 47  KSNSRMDHRPDGYHDGRGRRAYRKHYWGHPTPIEEMLPSQMELETAVKSCMTMEQLELYS 106

Query: 91  YQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKSPNPQVD--------RELEC---LE 139
              R+++I Q+L +G +         V        SP PQ D        RE+     LE
Sbjct: 107 LNVRLEEITQKLRTGDV---------VPHHRERSPSPPPQYDNHGRRLNTREIRYKKKLE 157

Query: 140 LEKQEVIGEILKLNPSYRTPPDYK-PLLKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRL 198
            E+  +I   +K+ P +R P DY+ P   +  V +PVK+YP  NF+GL+ GP   T K +
Sbjct: 158 DERHRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDM 217

Query: 199 EKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEE-FHISISADSYEKVDAATDLIELL 257
           E ++   I + G  +    K     SD +V+   EE  H  ++ADS +K++ A  LI+ +
Sbjct: 218 EAKSGAKIAIRGKGSVKEGK---GRSDPSVRGNMEEDLHCLVTADSEDKINHAIKLIDNV 274

Query: 258 VTSVS 262
           + + +
Sbjct: 275 IQTAA 279
Necessary for the splicing of pre-mRNA. The BPB1(SF1)-u2af59-u2af23 complex has a role in the recognition of the branch site (5'-UACUAAC-3'), the pyrimidine tract and the 3'-splice site at the 3'-end of introns.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1 Back     alignment and function description
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=BBP PE=3 SV=1 Back     alignment and function description
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bpb-1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BBP PE=3 SV=1 Back     alignment and function description
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6 Back     alignment and function description
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3 SV=1 Back     alignment and function description
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4 Back     alignment and function description
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1 Back     alignment and function description
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query780
297746433 886 unnamed protein product [Vitis vinifera] 0.961 0.846 0.457 1e-160
359478784866 PREDICTED: uncharacterized protein LOC10 0.937 0.844 0.448 1e-152
224073182771 predicted protein [Populus trichocarpa] 0.885 0.896 0.465 1e-149
224052980796 predicted protein [Populus trichocarpa] 0.885 0.868 0.431 1e-132
255580076838 protein binding protein, putative [Ricin 0.903 0.841 0.429 1e-131
449448990800 PREDICTED: uncharacterized protein LOC10 0.898 0.876 0.397 1e-109
449519466773 PREDICTED: uncharacterized protein LOC10 0.867 0.875 0.392 1e-107
400131593760 T2.13 [Malus x robusta] 0.842 0.864 0.388 1e-106
356538041787 PREDICTED: uncharacterized protein LOC10 0.9 0.891 0.379 2e-94
242080273761 hypothetical protein SORBIDRAFT_07g00115 0.85 0.871 0.353 6e-72
>gi|297746433|emb|CBI16489.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 412/900 (45%), Positives = 498/900 (55%), Gaps = 150/900 (16%)

Query: 1   MSSTAATTPSTVSNAGPKISKFAAKSGFVIPKNKLSGSLVPVFKGAKK---NDAINEEEK 57
           M+ T+ +  +T S++  +IS F AKSGFVIPKNKLSGS+VP+F+  KK   +D  NEE  
Sbjct: 17  MTGTSTSPAATTSSS--RISMFGAKSGFVIPKNKLSGSMVPIFRAGKKLGSSDGANEEST 74

Query: 58  ASSNDDGKKVVRKTKWGPDLSLDASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEV 117
                  K V RKTKWGPDL+ DA+V+RG ALA+QTRVDQI  QL+SG LE  +NQ   +
Sbjct: 75  -------KTVQRKTKWGPDLTQDAAVRRGTALAFQTRVDQITLQLKSGVLEIGDNQDSSL 127

Query: 118 AAQNADQKSPNPQVDREL-ECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVK 176
            AQ  DQ+ P+ Q + E  E LELE++E IGE+LKLNPSY+ PPDYKPLLKEA VPIPVK
Sbjct: 128 VAQVPDQEFPSHQNNSEKSELLELERREAIGEMLKLNPSYKAPPDYKPLLKEARVPIPVK 187

Query: 177 EYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTYEEFH 236
           EYPGYNF+GLIFGP SDT KRLEKET   ++VYG KADTG+KVEI+ SD  +Q  +EE +
Sbjct: 188 EYPGYNFIGLIFGPGSDTLKRLEKETGAKVQVYGNKADTGQKVEITPSDG-IQGAHEELY 246

Query: 237 ISISADSYEKVDAATDLIELLVTSVSGSLAAISTS-TLVSGENVSALNQSQGDGAQFLVP 295
           + ISA+++EKVDAA  LIELLVT VSG+ AA+ST+ T VSG+NV+  NQSQ      +VP
Sbjct: 247 LHISAETFEKVDAAVALIELLVTPVSGNPAAVSTTPTSVSGDNVNVHNQSQE-----VVP 301

Query: 296 NTFVNQGVPQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMH-------PLNTSSPILSNP 348
            T VN GV QP  GP QTP  GQFQ   PWFP GP   PMH       P N S+ IL+NP
Sbjct: 302 TTVVNPGVVQPVSGPSQTPPQGQFQYPGPWFPIGPPPIPMHLPSGFIPPSNPSAQILNNP 361

Query: 349 VNMP--------------------ARFPSTFKTPSLVPPSSQLQMQVPPGPYMPQIHSGA 388
            ++P                    A F S  + PS VP   Q  +Q+   PYMPQ     
Sbjct: 362 PHLPSPSFSASNMPSLFGPRPSPAAGFGSVLRNPSPVPLRPQSSIQMLQRPYMPQA---- 417

Query: 389 PRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPIHIGRPSMPSLPQAVSSVGPRPLPDR 448
             N P+ A  P   Q N+    PF   Q  P GP   GRPSMP LPQ+V ++   PLPDR
Sbjct: 418 --NLPMLAQHPLLAQPNVSAPLPFPVNQATPLGPPTTGRPSMPLLPQSVPNLLSGPLPDR 475

Query: 449 PLIPAGNLTGWSGAPANAAASLGSSNLGQLAHAMGP------------------------ 484
           P+ PAG+ TGW   P    ASLG + + Q+  +M P                        
Sbjct: 476 PITPAGSSTGWPRVPLGTPASLGPNQMVQMTTSMVPGVPRPVVASVAPPSNISAANMVSP 535

Query: 485 --------------PQGSRPV----FASAPPAAGGTSPAFPAALRPTQVPGSAH---TPV 523
                          Q +RP+    FAS PP   G SP  P +L P  VP       TP 
Sbjct: 536 VTFSSRPSAPQLPSTQQNRPLTPPTFASVPPPQMGPSPTTPVSLPPAPVPPQMQPLTTPA 595

Query: 524 ---QPSPHLTMAASPVLSVSRPTMP-----AGTSGSFSGSITNFSTMNLSSATAPRPPHP 575
               PSP   + ++PV S  + + P      G   S SG I +F+++    AT   P  P
Sbjct: 596 PIPNPSPRPVLGSTPVPSSMQSSTPPTPLQFGIPSSVSGGIPSFTSVRPPVATL-IPQRP 654

Query: 576 SSGDFTFQPHQPQNPSPLTVPRPSGMLPTQSTRSMGQMPAPQSP-----------SFRMG 624
           SS DFTFQPHQP N     VP PSG   TQ+       P P  P           SFR+ 
Sbjct: 655 SSSDFTFQPHQPLNAVSQAVPMPSGQPTTQN-------PLPPKPIMQPPMAPQPPSFRVA 707

Query: 625 APNTAPQHIMQ-VPRPQVGNQMGQPHAQHTSAVPFARNPNA-----------AFANVSPV 672
             N+ P   M    RPQV NQMG PH+Q  SA  F   P++           AF + S V
Sbjct: 708 MHNSTPPATMPPFLRPQVNNQMGPPHSQ-ISAASFPGTPSSLSPMSAPLRPPAFQSPSSV 766

Query: 673 SPTTPPSQMGPRSFSTGPQMHYPPGPFPPRPANP--LPRNHPALPNRPERHMGLNQQFSN 730
           +   P  Q GP +F+   Q+   PGPFP R  N   L +N PA P RP      NQ F N
Sbjct: 767 AAAIPVPQRGPGNFNPVRQISNLPGPFPSRSGNAMQLQQNFPAPPARPGNPSAPNQHFGN 826

Query: 731 NR----------SGGPQIYDPFSPTSTSVPSQQQGGNPARARKPENDPEYEDLMASVGVK 780
                        G PQIYDPFSPTS      QQGGNPA+ RK ENDPEYEDLMASVGVK
Sbjct: 827 MSFASPKPASGPHGAPQIYDPFSPTSVPRAPPQQGGNPAKLRKQENDPEYEDLMASVGVK 886

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359478784|ref|XP_002283424.2| PREDICTED: uncharacterized protein LOC100246694 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224073182|ref|XP_002304012.1| predicted protein [Populus trichocarpa] gi|222841444|gb|EEE78991.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224052980|ref|XP_002297647.1| predicted protein [Populus trichocarpa] gi|222844905|gb|EEE82452.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580076|ref|XP_002530871.1| protein binding protein, putative [Ricinus communis] gi|223529560|gb|EEF31511.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449448990|ref|XP_004142248.1| PREDICTED: uncharacterized protein LOC101218693 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519466|ref|XP_004166756.1| PREDICTED: uncharacterized protein LOC101224581 [Cucumis sativus] Back     alignment and taxonomy information
>gi|400131593|emb|CCH50992.1| T2.13 [Malus x robusta] Back     alignment and taxonomy information
>gi|356538041|ref|XP_003537513.1| PREDICTED: uncharacterized protein LOC100777227 [Glycine max] Back     alignment and taxonomy information
>gi|242080273|ref|XP_002444905.1| hypothetical protein SORBIDRAFT_07g001150 [Sorghum bicolor] gi|241941255|gb|EES14400.1| hypothetical protein SORBIDRAFT_07g001150 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query780
TAIR|locus:2096648607 AT3G32940 [Arabidopsis thalian 0.391 0.502 0.375 2.1e-71
TAIR|locus:2176222804 AT5G51300 [Arabidopsis thalian 0.217 0.211 0.348 6.1e-24
UNIPROTKB|A2VDM7639 SF1 "Uncharacterized protein" 0.212 0.259 0.302 6.6e-24
UNIPROTKB|Q15637639 SF1 "Splicing factor 1" [Homo 0.212 0.259 0.302 6.6e-24
UNIPROTKB|F1RQR0639 SF1 "Uncharacterized protein" 0.212 0.259 0.302 1.1e-23
UNIPROTKB|E2RRT4638 SF1 "Uncharacterized protein" 0.212 0.260 0.302 2.7e-23
MGI|MGI:1095403653 Sf1 "splicing factor 1" [Mus m 0.212 0.254 0.302 8e-23
UNIPROTKB|F1LSC3653 Sf1 "Protein Sf1" [Rattus norv 0.212 0.254 0.302 6.7e-22
UNIPROTKB|F1LM37548 Sf1 "Protein Sf1" [Rattus norv 0.212 0.302 0.302 3.1e-20
ZFIN|ZDB-GENE-030131-2492663 sf1 "splicing factor 1" [Danio 0.244 0.288 0.296 7.8e-18
TAIR|locus:2096648 AT3G32940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 450 (163.5 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
 Identities = 122/325 (37%), Positives = 175/325 (53%)

Query:   130 QVDRELECLELEKQEVIGEILKLNPSYRTPPDYKPLLKEAVVPIPVKEYPGYNFLGLIFG 189
             +V+     LE EK+E IGEIL+LNP Y+ PPDYKPLLKEA +PI VKE+  ++FL LIFG
Sbjct:    96 EVETNRTDLEFEKREAIGEILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFG 155

Query:   190 PASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYEKVD 248
                DTQKRLEKET   ++++GTK   GEKVE+S SD N +Q +++E +  IS+D+YEKVD
Sbjct:   156 SQGDTQKRLEKETGAKVQIFGTKTG-GEKVELSPSDENEIQKSWQELYFQISSDTYEKVD 214

Query:   249 AATDLIELLVTSVSGSLAA-----ISTSTLVSGENVSALNQSQGDGAQFLVPNTFVNQGV 303
             AA  ++ELL++SVSG+  A      S S ++S    +++  +    ++    ++ V Q  
Sbjct:   215 AAIAVVELLMSSVSGNTGAGAAPPSSISEIISTIPGNSIATATAPTSERTTDHSQVLQHG 274

Query:   304 PQPEVGPLQTPLHGQFQSQTPWFPSGPSQNPMHPLNTSSPILSNPVNMPARFPSTFKTPS 363
                 +   Q PLH   +     F SG   N        + +  NP+      P    T S
Sbjct:   275 SSFHLSSNQAPLHPPLEH----FVSGLGYNIQEQELPKNSMNLNPLFAQQLLPVPHDT-S 329

Query:   364 LVPPSSQLQMQVPPGPYMPQIHSGAPRNFPVPAPQPSSIQSNMPGSHPFTGIQPQPTGPI 423
             L PP S +    PP  + P   S  PR + V  P  S  Q    G  P + ++P      
Sbjct:   330 L-PPGSHVPR--PPDSF-PFSLSNTPRTYSVTLPPYSGSQIQPIG--PRSTVRPSTLFTF 383

Query:   424 H-IGRPSM-PSLPQAVSSVGPRPLP 446
             H + RP++ P + Q+V  + P   P
Sbjct:   384 HPVHRPTLLPDIDQSVRPLAPNFSP 408
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2176222 AT5G51300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDM7 SF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q15637 SF1 "Splicing factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQR0 SF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRT4 SF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1095403 Sf1 "splicing factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSC3 Sf1 "Protein Sf1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LM37 Sf1 "Protein Sf1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2492 sf1 "splicing factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024751001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (886 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query780
cd02395120 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho 3e-14
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-11
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-09
COG5176269 COG5176, MSL5, Splicing factor (branch point bindi 3e-09
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 4e-04
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 8e-04
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.003
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information 
 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 173 IPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQSTY 232
           IPVK+YP YNF+GLI GP  +T K+LEKET   I + G  +    K E            
Sbjct: 6   IPVKQYPKYNFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLN 65

Query: 233 EEFHISISADSY--EKVDAATDLIE-LLVTSVSG 263
           E  H+ I+A++   E +  A + IE LL  ++ G
Sbjct: 66  EPLHVLITAETPPEEALAKAVEAIEELLKPAIEG 99

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|227503 COG5176, MSL5, Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 780
KOG0119554 consensus Splicing factor 1/branch point binding p 100.0
COG5176269 MSL5 Splicing factor (branch point binding protein 100.0
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 99.95
KOG1588259 consensus RNA-binding protein Sam68 and related KH 99.94
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.32
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 99.26
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.23
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 99.16
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.13
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 99.04
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.73
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 98.72
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 98.7
PRK13763180 putative RNA-processing protein; Provisional 98.61
smart0032269 KH K homology RNA-binding domain. 98.59
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 98.49
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.47
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 98.45
KOG1960531 consensus Predicted RNA-binding protein, contains 98.33
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.18
PF1301443 KH_3: KH domain 98.14
PRK13763180 putative RNA-processing protein; Provisional 98.12
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.04
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.0
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 97.9
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 97.9
COG1094194 Predicted RNA-binding protein (contains KH domains 97.47
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 96.64
PRK12704520 phosphodiesterase; Provisional 96.61
KOG2814345 consensus Transcription coactivator complex, P50 c 96.6
PRK00106535 hypothetical protein; Provisional 96.54
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.54
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 96.49
KOG0119554 consensus Splicing factor 1/branch point binding p 96.48
KOG1960531 consensus Predicted RNA-binding protein, contains 96.43
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 96.25
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 95.56
PRK12705508 hypothetical protein; Provisional 94.6
COG1094194 Predicted RNA-binding protein (contains KH domains 93.66
KOG2874356 consensus rRNA processing protein [Translation, ri 92.91
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 92.15
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 91.77
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 89.1
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 89.02
COG1855604 ATPase (PilT family) [General function prediction 87.94
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 87.3
PF1318469 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW 87.17
KOG0633375 consensus Histidinol phosphate aminotransferase [A 86.68
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 86.65
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-57  Score=491.98  Aligned_cols=209  Identities=31%  Similarity=0.491  Sum_probs=181.7

Q ss_pred             cccccCCCCCCCCC-----c--------------hhhhhhhHHHHHHHHHHHHHHHhhCCCccCCCCCCCCCCCCCCCCC
Q 003997           66 KVVRKTKWGPDLSL-----D--------------ASVKRGRALAYQTRVDQIVQQLESGSLEAEENQVPEVAAQNADQKS  126 (780)
Q Consensus        66 ~rkRKSRWgpdl~~-----d--------------~~v~~~~a~A~QlRIeeIt~KL~tg~l~~~~~e~s~SP~P~p~yds  126 (780)
                      .|+|+|||..|...     +              -..++.++|++++||||||+||+++|+.++..+..+||+|+++||.
T Consensus        13 p~~~rS~w~~~~~es~~~~s~~~~~~lp~~m~~~lt~eq~~~y~l~~~iee~t~kLrt~d~~~p~~~e~rSPsp~p~yda   92 (554)
T KOG0119|consen   13 PRRNRSRWDRDTVESDVVNSMTSTSALPSSMPGGLTEEQKESYSLNLRIEEITRKLRTGDVGVPPPRELRSPSPEPVYDA   92 (554)
T ss_pred             cchhhccCCCCccccccccCcccccccccccccccchhhhhhhhHHHHHHHhhhhhccccCCCCCCccccCCCcchhhhh
Confidence            35569999988542     1              1124567899999999999999999998888888899999999999


Q ss_pred             CCCchhHH----HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-ccEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHH
Q 003997          127 PNPQVDRE----LECLELEKQEVIGEILKLNPSYRTPPDYKPL-LKEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKE  201 (780)
Q Consensus       127 ~GkR~NTr----RekLEeER~~IIeemlKliP~fRPPsDYkP~-~k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeE  201 (780)
                      .|+|+|||    |++||+||++||++|+|+||.||+|.|||+. ++.+|||||+|||||||||||||||||+|+|+||+|
T Consensus        93 ~g~R~ntRe~R~r~~Le~er~e~I~~~lk~nP~fkpP~DYk~p~~~~~Kv~IPvke~Pd~NFvGLiiGPRG~TqK~lE~e  172 (554)
T KOG0119|consen   93 KGKRLNTREQRARKKLEDERHEIIEEILKLNPGFKPPADYKPPAKLHDKVYIPVKEFPDINFVGLIIGPRGNTQKRLERE  172 (554)
T ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCcccCcccccccceecchhhcCCcceeEEEecCCccHHHHHHHH
Confidence            99999994    8999999999999999999999999999999 578999999999999999999999999999999999


Q ss_pred             hCCeEEEeCCccCCCcchhcccCCCC-ccCCCCceEEEEEecCHHHHHHHHHHHHhcccc---cccchhh-----hcccc
Q 003997          202 TRTVIKVYGTKADTGEKVEISTSDAN-VQSTYEEFHISISADSYEKVDAATDLIELLVTS---VSGSLAA-----ISTST  272 (780)
Q Consensus       202 TGAKI~IRGKGS~k~~K~E~~~~Dg~-~~~~~EpLHVlIsAd~~EkVdkAvelIE~LL~p---Vevg~~a-----~~~~~  272 (780)
                      |||||.||||||+||+|.  +..|.. ...++|+|||+|+||++|+|++|+++||+||.+   +-++..+     +++++
T Consensus       173 tgAKI~IRGkgSvkEgk~--~~~d~~~~~~~~epLH~~Isadt~eki~~Ai~vienli~~av~~~e~~n~l~~~Qlrela  250 (554)
T KOG0119|consen  173 TGAKIAIRGKGSVKEGKG--RSDDLSYIPKENEPLHCLISADTQEKIKKAIAVIENLIQSAVSVPEGQNDLKRLQLRELA  250 (554)
T ss_pred             hCCeEEEecccccccccc--CCcccccccccccceeEEEecchHHHHHHHHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence            999999999999999883  334566 777999999999999999999999999999996   3333333     34446


Q ss_pred             cccc
Q 003997          273 LVSG  276 (780)
Q Consensus       273 ~v~g  276 (780)
                      +.+|
T Consensus       251 ~lNg  254 (554)
T KOG0119|consen  251 RLNG  254 (554)
T ss_pred             HhCC
Confidence            6666

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>COG1855 ATPase (PilT family) [General function prediction only] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A Back     alignment and domain information
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query780
2bl5_A140 Solution Structure Of The Kh-Qua2 Region Of The Xen 4e-05
>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 173 IPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKA-DTGEKVEISTSDANVQST 231
           +PVKEYP +NF+G I GP   T K+LE ET   I V G  +    +K E +    N +  
Sbjct: 8   VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHL 67
Query: 232 YEEFHISISA-DSYEKVD-----AATDLIELLVTSVSG 263
            E+ H+ I+  D+  + +     A  ++ +LLV +  G
Sbjct: 68  NEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEG 105

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query780
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 1e-19
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 3e-16
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 2e-12
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 4e-08
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 5e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-09
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-04
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 171 VPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSDANVQS 230
           V IP  EYP  NF+GL+ GP  +T K +EKE    I + G  +    KV        +  
Sbjct: 11  VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DGQMLPG 69

Query: 231 TYEEFHISISADSYEKVDAATDLIELLVTSV 261
             E  H  ++A++ E V  A + I  ++   
Sbjct: 70  EDEPLHALVTANTMENVKKAVEQIRNILKQG 100
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query780
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 99.95
4fxw_B124 Splicing factor 1; UHM, protein binding, phosphory 99.94
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 99.94
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.92
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 99.28
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.27
1x4m_A94 FAR upstream element binding protein 1; KH domain, 99.21
1we8_A104 Tudor and KH domain containing protein; structural 99.2
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 99.17
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 99.15
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 99.15
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 99.14
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 99.13
1x4n_A92 FAR upstream element binding protein 1; KH domain, 99.12
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 99.1
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.08
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 99.08
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 99.08
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 99.07
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 99.06
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 99.06
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.03
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 99.03
2cpq_A91 FragIle X mental retardation syndrome related prot 99.03
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.03
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 99.0
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.99
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.99
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 98.97
2dgr_A83 Ring finger and KH domain-containing protein 1; st 98.89
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.85
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.73
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 98.73
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.7
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.61
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.61
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 98.57
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.47
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 98.46
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.45
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 97.92
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 97.89
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.73
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 97.72
3n89_A376 Defective in GERM LINE development protein 3, ISO; 97.21
3n89_A376 Defective in GERM LINE development protein 3, ISO; 97.13
1tua_A191 Hypothetical protein APE0754; structural genomics, 96.65
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 96.6
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 95.33
2z0s_A235 Probable exosome complex RNA-binding protein 1; al 82.8
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
Probab=99.95  E-value=1.2e-28  Score=233.57  Aligned_cols=109  Identities=28%  Similarity=0.470  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhccc-CCCCccCCCCceEEEEEecCHH-
Q 003997          168 EAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEIST-SDANVQSTYEEFHISISADSYE-  245 (780)
Q Consensus       168 ~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~-~Dg~~~~~~EpLHVlIsAd~~E-  245 (780)
                      .+|||||+++||+|||||+||||||+|+|+||+||||||.||||||+|++|+|... .+..+++++|||||+|+|++.+ 
T Consensus         3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~   82 (140)
T 2bl5_A            3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN   82 (140)
T ss_dssp             EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred             eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence            68999999999999999999999999999999999999999999999999887643 3334889999999999998875 


Q ss_pred             ----HHHHHHHHHHhcccccccchhhh-----cccccccc
Q 003997          246 ----KVDAATDLIELLVTSVSGSLAAI-----STSTLVSG  276 (780)
Q Consensus       246 ----kVdkAvelIE~LL~pVevg~~a~-----~~~~~v~g  276 (780)
                          +|++|+++|+.||.++.++...+     .++|.++|
T Consensus        83 ~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNG  122 (140)
T 2bl5_A           83 RAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNG  122 (140)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSST
T ss_pred             hHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcC
Confidence                99999999999999987665433     44566665
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 780
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 5e-19
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 2e-17
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 0.001
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 81.8 bits (202), Expect = 5e-19
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 171 VPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEIS-TSDANVQ 229
           + +PVKEYP +NF+G I GP   T K+LE ET   I V G  +   +K E       N +
Sbjct: 6   LYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWE 65

Query: 230 STYEEFHISISAD-----SYEKVDAATDLIELLVTSV 261
              E+ H+ I+ +     +  K+  A + ++ L+   
Sbjct: 66  HLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPA 102
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query780
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 99.96
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 99.95
d2cpqa178 Fragile X mental retardation syndrome related prot 99.15
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 99.11
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 99.01
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 99.0
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.99
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.96
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 98.96
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.96
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.96
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.94
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.92
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 98.84
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.84
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.83
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 98.75
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.75
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.73
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 98.73
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.69
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.67
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.65
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.53
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.48
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 90.89
d3etja179 N5-carboxyaminoimidazole ribonucleotide synthetase 83.34
d1wjwa_112 Phosphoacetylglucosamine mutase {Mouse (Mus muscul 81.14
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.96  E-value=3e-30  Score=240.91  Aligned_cols=110  Identities=28%  Similarity=0.439  Sum_probs=96.3

Q ss_pred             cEEEEEcCCCCCCCCcceeeeecCCchhHHHHHHHhCCeEEEeCCccCCCcchhcccCC-CCccCCCCceEEEEEecCH-
Q 003997          167 KEAVVPIPVKEYPGYNFLGLIFGPASDTQKRLEKETRTVIKVYGTKADTGEKVEISTSD-ANVQSTYEEFHISISADSY-  244 (780)
Q Consensus       167 k~~KIyIPvkeyP~~NFIGlIIGPrGnTiKrLEeETGAKI~IRGKGS~k~~K~E~~~~D-g~~~~~~EpLHVlIsAd~~-  244 (780)
                      .++|||||+|+||+|||||+||||||+|+|+||+||||||.||||||+|+++.+....+ ..+++++|||||+|+|++. 
T Consensus         2 l~eKv~IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~   81 (134)
T d2bl5a1           2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ   81 (134)
T ss_dssp             EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred             cceEEeCCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecCcH
Confidence            36899999999999999999999999999999999999999999999999988775443 3388999999999999874 


Q ss_pred             ----HHHHHHHHHHHhcccccccchh-----hhcccccccc
Q 003997          245 ----EKVDAATDLIELLVTSVSGSLA-----AISTSTLVSG  276 (780)
Q Consensus       245 ----EkVdkAvelIE~LL~pVevg~~-----a~~~~~~v~g  276 (780)
                          .+|++|+++|++||.++.++..     -+.++|.++|
T Consensus        82 ~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNG  122 (134)
T d2bl5a1          82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNG  122 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSST
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcC
Confidence                4799999999999999877654     3445577776
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure