Citrus Sinensis ID: 004011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
MVETRRSSSSSKRALPSSQASPPPSNKRSKATDAPPSTGDMPVAPPSEAASKSGSESREPELRSSDLDLTDDAKPADVDKSVDADVEADALVSPPTPGETAVDAEKSKAVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPDVDMKDATSNNDDAGSSSRGKTVVPQSDAANENPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPVP
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEEcccEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEccEEcccccEEEEEcccEEEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHccEEEEEEccccccccccccccHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccHHHHcccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHHHccccccccEEEcccEEEEcccccccccccccccccHEEEEEEEEccccEEEEEEEEcccEEEEEccEEEccccEEEEccccEEEEcccccEEEEEEEcccccccccccccccEEEcccccccccEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEcccccccEccHHHHHHHHHHHHHHHcHHcHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHcccccHcHcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEEccccccccccccccccccccEEccHHcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHcccHHHHHHHHHHHHHccccEEEEEccccccccHccccccccEcccccccHHHHHHcccccc
mvetrrssssskralpssqaspppsnkrskatdappstgdmpvappseaasksgsesrepelrssdldltddakpadvdksvdadveadalvspptpgetavdaekskaVGVVFNGRVKKRATklgkvgsripwarlisqcsqnshlsmtgavftvghnrqcdlylkdpsisknlcrlrrienggpsgalleitggkgevevngnvhpkdsqvvlrggdelvfspsgkhsyifqqlsddtlaapgihppmsileaqsaplktmhiearsgdpsaVAGASILASLSNIQkdlslippptkagvdaqnSEIAslasgcdgpedripdvdmkdatsnnddagsssrgktvvpqsdaanenpnldsigldacvdaeigkipgatyELRPLLRmlagssspdfdisggiSKILDEQREIRELLkdsdrptvLISARRQAFKDSlqegilgpenievsfesfpyylsdITKNVLIASTYVHLKCNnfakyasdlptmcprillsgpagseIYQETLAKALAKHFSARLLIVDslllpggsskeadsvkessRTEKASMFAKRAALLqhrkptssveaditggtavgsqalpkpeistassknytfkkgdrvkfvgnvtsgttvqptlrgpgigfrgrvilpfedndfskigvrfdrsipegnnlggfceddhgffctasslrldsslgdevDKLAINELFEVAlnesksspliVFVKDIEksltgnndaYGALKSklenlpsnvvvigshtqldsrkekshpggllftkfgsnqtalldlafpvp
mvetrrssssskralpssqaspppsnkrskatdappstgdmpvappseaasksgsesrepelrssdldltddakPADVDKSVDADVEadalvspptpgetavdaekskavgvvfngrvkkratklgkvgsripwARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPDVDMKDAtsnnddagsssrgktvvpqsdaanenpnldsIGLDACVDAEIGKIPGATYELRPLLRMLAGSsspdfdisgGISKILDEQREIREllkdsdrptvlISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSlllpggsskeadsvkessrteKASMFAKRAAllqhrkptssveaditggtavgsqalpkpeistassknytfkkgdrvkfvgnvtsgttvqptlrgpgigFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEValneskssplIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFtkfgsnqtalldlafpvp
MVETrrssssskralpssqaspppsNKRSKATDAPPSTGDMPVAPPSEAASKSGSESREPELRSSDLDLTDDAKPADVDKSVDADVEADALVSPPTPGETAVDAEKSKAVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITggkgevevngnvHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPDVDMKDATSNNDDAGSSSRGKTVVPQSDAANENPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPVP
************************************************************************************************************AVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEV*********QVVLRGGDELVFSPSGKHSYIFQQLS****************************************************************************************************************************SIGLDACVDAEIGKIPGATYELRPLLRMLAG*******ISGGISKIL*****************VLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL*******************************************************************TFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIG****************LLFTKFGSNQTALLDL*****
****************************************************************************************************************************************************MTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQ*************************************************************************************************************************************************************************************************************QEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSS************************************************************************************************VILPFEDNDFSKIGVRFDR**************DHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGS*****************FTKFGSNQTALLDLAFPVP
*****************************************************************DLDLTDDAKPADVDKSVDADVEADALVS***********EKSKAVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPDVDMKDAT******************SDAANENPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGG*****************SMFAKRAALL**********ADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSH*********SHPGGLLFTKFGSNQTALLDLAFPVP
*********************************************************************************************************************************SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPS**************QKDLSLIPP************************************************************NPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP*******************************************************************FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPVP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVETRRSSSSSKRALPSSQASPPPSNKRSKATDAPPSTGDMPVAPPSEAASKSGSESREPELRSSDLDLTDDAKPADVDKSVDADVEADALVSPPTPGETAVDAEKSKAVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPDVDMKDATSNNDDAGSSSRGKTVVPQSDAANENPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query779
359479902 1258 PREDICTED: uncharacterized protein LOC10 0.985 0.610 0.651 0.0
297743865 1287 unnamed protein product [Vitis vinifera] 0.987 0.597 0.632 0.0
449436513 1270 PREDICTED: uncharacterized protein LOC10 0.952 0.584 0.579 0.0
356536729 1250 PREDICTED: uncharacterized protein LOC10 0.912 0.568 0.604 0.0
224131154 1231 predicted protein [Populus trichocarpa] 0.867 0.549 0.626 0.0
356536727 1247 PREDICTED: uncharacterized protein LOC10 0.937 0.585 0.589 0.0
224064434 1223 predicted protein [Populus trichocarpa] 0.856 0.545 0.622 0.0
356502858 1235 PREDICTED: uncharacterized protein LOC10 0.947 0.597 0.575 0.0
357442557 1242 Katanin p60 ATPase-containing subunit A- 0.967 0.607 0.571 0.0
334182251 1218 AAA-type ATPase-like protein [Arabidopsi 0.967 0.619 0.556 0.0
>gi|359479902|ref|XP_002267361.2| PREDICTED: uncharacterized protein LOC100260666 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/793 (65%), Positives = 605/793 (76%), Gaps = 25/793 (3%)

Query: 1   MVETRRSSSSSKRALPSSQASPPPSNKRSKATDAPPSTGDMPVAPPSEA---ASKSGSES 57
           MVETRRSSSSSKR    S +SP PS KRSK+ +   S+ ++P   P EA   A +SGSE 
Sbjct: 1   MVETRRSSSSSKRRHSPSGSSPLPSGKRSKSQETASSSSEVPGPLPEEALCQAKESGSEH 60

Query: 58  REPELRSSDLDLTDDAKPADV------DKSVDADVEADALV--SPPTPGETAVDAEKSKA 109
            +   + SD   TD +K +D       +KS +A  E +ALV  SP    ++AV  EKSK+
Sbjct: 61  IDQAPQPSDPPRTDTSKASDACDVIAKEKSTEAVAEGEALVAASPLPLVDSAVGGEKSKS 120

Query: 110 VGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDP 169
           V VV N R +KR+ K     + + W +L+SQCSQ  H  + G +FT+G +R  +L L+DP
Sbjct: 121 VAVVSN-RGRKRSVK---SNATVAWGKLLSQCSQYPHQPLCGPLFTIGQSRASNLSLRDP 176

Query: 170 SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKH 229
           SIS  LCRLR IE GG S  LLEITGGKG V+VNG +H K S +++ GGDELVFS SG+ 
Sbjct: 177 SISNTLCRLRHIERGGASVVLLEITGGKGVVQVNGKIHQKSSTLIISGGDELVFSASGQP 236

Query: 230 SYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPSAVAGASILASLSNIQK 289
           +YIFQQ + D LAAP I   +SILEAQSAP+K +H+EARSGDPSAVAGASILASLSN++K
Sbjct: 237 AYIFQQFTSDNLAAPVIPSSVSILEAQSAPVKGIHVEARSGDPSAVAGASILASLSNLRK 296

Query: 290 DLSLIPPPTKAGVDAQN-SEIASLASGCDGPEDRIPDVDMKDATSNNDDAGSSSRGKTVV 348
           DLSL+PPP K+G D Q  +E+ +    C   +  IPD DMKDA  NND AG SSR KT V
Sbjct: 297 DLSLLPPP-KSGEDVQQGTEMTT--PPCGASDSCIPDADMKDA-ENNDVAGVSSREKTDV 352

Query: 349 PQSDAANENPNLDSIGLDACVDAEIGKIPGATYELRPLLRMLAGSSSPDFDISGGISKIL 408
           P S+AANEN NL SIGLDAC D EIGK+PGATYELRPLLRMLAGSSS DFD+SG ISKIL
Sbjct: 353 PSSEAANENLNLQSIGLDACTDTEIGKVPGATYELRPLLRMLAGSSSSDFDLSGSISKIL 412

Query: 409 DEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVL 468
           +EQREIRE+LKD + P  L S RRQAFKDSLQEGIL  ++IEVSFESFPYYLSD TKNVL
Sbjct: 413 EEQREIREILKDLEPPMALTSTRRQAFKDSLQEGILSSDDIEVSFESFPYYLSDTTKNVL 472

Query: 469 IASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528
           I STY+HL    FAKY  DL ++CPRILLSGPAGSEIYQETL KALAKHF+ARLLIVDSL
Sbjct: 473 ITSTYIHLMHIKFAKYTMDLSSVCPRILLSGPAGSEIYQETLTKALAKHFTARLLIVDSL 532

Query: 529 LLPGGSS-KEADSVKESSRTEKASMFAKR---AALLQHRKPTSSVEADITGGTAVGSQAL 584
           LLPGGS+ K+ D VKE++R E+AS+FAKR   AA+LQH+KP SSVEADITG + V S+AL
Sbjct: 533 LLPGGSTPKDPDPVKENTRGERASIFAKRAAQAAVLQHKKPASSVEADITGASTVSSRAL 592

Query: 585 PKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKI 644
           PK E STA+SKNY FK G  VKFVG   SG +  P LRGP  G+RG+V+L FE+N  SKI
Sbjct: 593 PKQETSTATSKNYIFKAG-IVKFVGPPPSGFSPMPPLRGPTNGYRGKVLLAFEENGSSKI 651

Query: 645 GVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSS 704
           GVRFDRSIPEGN+LGG CEDDHGFFC A  LRLDSS  D+VDKLA+NELFEVA NESKSS
Sbjct: 652 GVRFDRSIPEGNDLGGLCEDDHGFFCPADLLRLDSSSSDDVDKLALNELFEVASNESKSS 711

Query: 705 PLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKF 764
           PLI+F+KDIEKS+ GN +AY      L+NLP N+V+IGSHTQ+DSRKEKSHPGGLLFTKF
Sbjct: 712 PLILFIKDIEKSIVGNPEAYXXXXXXLDNLPENIVIIGSHTQMDSRKEKSHPGGLLFTKF 771

Query: 765 GSNQTALLDLAFP 777
           GSNQTALLDLAFP
Sbjct: 772 GSNQTALLDLAFP 784

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743865|emb|CBI36835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436513|ref|XP_004136037.1| PREDICTED: uncharacterized protein LOC101211144 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536729|ref|XP_003536888.1| PREDICTED: uncharacterized protein LOC100794932 [Glycine max] Back     alignment and taxonomy information
>gi|224131154|ref|XP_002321014.1| predicted protein [Populus trichocarpa] gi|222861787|gb|EEE99329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536727|ref|XP_003536887.1| PREDICTED: uncharacterized protein LOC100794406 [Glycine max] Back     alignment and taxonomy information
>gi|224064434|ref|XP_002301474.1| predicted protein [Populus trichocarpa] gi|222843200|gb|EEE80747.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502858|ref|XP_003520232.1| PREDICTED: uncharacterized protein LOC100800938 [Glycine max] Back     alignment and taxonomy information
>gi|357442557|ref|XP_003591556.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|355480604|gb|AES61807.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|334182251|ref|NP_001117220.2| AAA-type ATPase-like protein [Arabidopsis thaliana] gi|332189372|gb|AEE27493.1| AAA-type ATPase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query779
TAIR|locus:2133298 1265 AT4G02480 [Arabidopsis thalian 0.920 0.566 0.55 2.3e-197
TAIR|locus:2126783 1122 AT4G24860 [Arabidopsis thalian 0.220 0.153 0.424 9.1e-57
TAIR|locus:2024522 829 DAA1 "DUO1-activated ATPase 1" 0.202 0.190 0.346 1.4e-16
TAIR|locus:2132922 830 AT4G28000 [Arabidopsis thalian 0.118 0.110 0.414 4.2e-14
TAIR|locus:4010714050 829 AT5G52882 [Arabidopsis thalian 0.116 0.109 0.414 3.1e-13
TAIR|locus:2031005 1003 AT1G50140 [Arabidopsis thalian 0.148 0.115 0.344 1.4e-08
TAIR|locus:2133298 AT4G02480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1911 (677.8 bits), Expect = 2.3e-197, P = 2.3e-197
 Identities = 418/760 (55%), Positives = 520/760 (68%)

Query:    37 STGDMPVAPPSEAASKSGSESREPELRSSDLDLTDDAKPA---DV---DKS--VDADVEA 88
             S  ++P+     A S  GSES EPEL SSD    D  KP    DV   + S   DA+ E 
Sbjct:    56 SASEVPIENQGPA-SDPGSESGEPELGSSDPQAMDAEKPVVTTDVPVMENSPETDANPEV 114

Query:    89 DALVSPPTPGETAVDAEKSKAVGVVFNGRVKKRATKLGKVGSRIPWARLISQCSQNSHLS 148
             + L +P   GE   DA+KSKA         KKRA K        PWA+L+SQ SQN H  
Sbjct:   115 EVLATPTVAGEAVADADKSKAA--------KKRALKA-------PWAKLLSQYSQNPHRV 159

Query:   149 MTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITXXXXXXXXXXXXHP 208
             + G VFTVG  R CDL ++D ++   LC L++ E+GGPS A LEI             + 
Sbjct:   160 IRGPVFTVGR-RGCDLSIRDQAMPSTLCELKQSEHGGPSVASLEILGNGVIVHVNGKCYQ 218

Query:   209 KDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEAR 268
             K + V LRGGDE++FS +GKH+YIFQ + D+ LAAP     +SI EA+ APLK +H+E R
Sbjct:   219 KSTCVHLRGGDEVIFSLNGKHAYIFQPVKDENLAAPDRASSLSICEARGAPLKGVHVETR 278

Query:   269 SGD---PSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIPD 325
             +GD    S V GASILASLS + +   L+PP  KAG   QN  +  + S  +   D I D
Sbjct:   279 AGDVDGASDVDGASILASLSKL-RSFHLLPPIAKAGKRQQNPAVPVVPSSFN---DCISD 334

Query:   326 VDMKDATSNNDDAGSSSRGKTVVPQSDA-ANENPNLDSIGLDACVDAEIGKIPGATYELR 384
              DM DA SNND A  +S  K     +   ANEN N+D  GLD   +A+ G +P A YE+R
Sbjct:   335 TDMNDADSNNDHAAVASVEKIAAASTPGTANENLNVDGSGLDPFQEADGGNVPAAGYEIR 394

Query:   385 PLLRMLAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGIL 444
             P++ +L  SSS  FDI G IS++LDE+RE++E L++ D  +  IS RRQAFKDSL+ G+L
Sbjct:   395 PIVHLLGESSS--FDIRGSISRLLDERREVKEFLREFDLSST-ISTRRQAFKDSLRGGVL 451

Query:   445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGS 503
               +NI++SFE+FPYYLS  TK VL+ S YVH+   + +A +A+DL T CPRILLSGP+GS
Sbjct:   452 NAQNIDISFENFPYYLSATTKGVLMISMYVHMNGGSKYANFATDLTTACPRILLSGPSGS 511

Query:   504 EIYQETLAKALAKHFSARLLIVDSLLLPGGS-SKEADSVKESSRTEKASMFAKRAA---- 558
             EIYQE LAKALAK F A+L+IVDSLLLPGGS ++EA+S KE SR E+ SM AKRA     
Sbjct:   512 EIYQEMLAKALAKQFGAKLMIVDSLLLPGGSPAREAESSKEGSRRERLSMLAKRAVQAAQ 571

Query:   559 LLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSG-TTV 617
             +LQH+KPTSSV+ADITGG+ + SQALPK E+STA+SK+YTFK GDRVKFVG   S  +++
Sbjct:   572 VLQHKKPTSSVDADITGGSTLSSQALPKQEVSTATSKSYTFKAGDRVKFVGPSASAISSL 631

Query:   618 QPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRL 677
             Q  LRGP IG +G+V L FEDN  SKIG+RFDR + +GN+LGG CE+DHGFFC ASSLRL
Sbjct:   632 QGQLRGPAIGSQGKVALAFEDNCASKIGIRFDRPVQDGNDLGGLCEEDHGFFCAASSLRL 691

Query:   678 DSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSN 737
             + S  D+ DKLA+NE+FEVAL+ES+   LI+F+KDIEKSL GN+D Y  LKSKLE LP N
Sbjct:   692 EGSSSDDADKLAVNEIFEVALSESEGGSLILFLKDIEKSLVGNSDVYATLKSKLETLPEN 751

Query:   738 VVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 777
             +VVI S TQLDSRKEKSHPGG LFTKFG NQTALLDLAFP
Sbjct:   752 IVVIASQTQLDSRKEKSHPGGFLFTKFGGNQTALLDLAFP 791
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016887 "ATPase activity" evidence=ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2126783 AT4G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024522 DAA1 "DUO1-activated ATPase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132922 AT4G28000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010714050 AT5G52882 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031005 AT1G50140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027975001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1146 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query779
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 1e-06
pfam0049867 pfam00498, FHA, FHA domain 9e-05
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 151 GAVFTVG-HNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209
           G  +T+G  +  CD+ L DPS+S+    +R   +GG    +L   G      VNG     
Sbjct: 21  GGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGGV---VLIDLGSTNGTFVNGQRVSP 77

Query: 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234
              V LR GD +    +   S+ F+
Sbjct: 78  GEPVRLRDGDVIRLG-NTSISFRFE 101

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 779
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 99.39
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.35
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.28
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 98.84
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 98.49
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.48
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 98.4
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 97.95
COG3456430 Predicted component of the type VI protein secreti 97.9
CHL00195489 ycf46 Ycf46; Provisional 97.12
KOG1881793 consensus Anion exchanger adaptor protein Kanadapt 96.97
KOG1882293 consensus Transcriptional regulator SNIP1, contain 96.41
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 96.31
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 96.03
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 94.9
KOG0733 802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 94.68
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 94.67
TIGR00390 441 hslU ATP-dependent protease HslVU, ATPase subunit. 94.54
PRK03992389 proteasome-activating nucleotidase; Provisional 94.18
TIGR01241 495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 93.94
PRK05201 443 hslU ATP-dependent protease ATP-binding subunit Hs 93.51
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 93.4
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 93.21
KOG0736953 consensus Peroxisome assembly factor 2 containing 93.11
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 93.05
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 92.92
CHL00176 638 ftsH cell division protein; Validated 92.65
PRK12377248 putative replication protein; Provisional 92.57
PF00004132 AAA: ATPase family associated with various cellula 92.33
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 91.86
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 91.85
PRK07952244 DNA replication protein DnaC; Validated 91.46
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 90.95
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 90.68
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 90.28
PRK08116268 hypothetical protein; Validated 89.96
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 89.82
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 89.75
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 88.77
PF00004132 AAA: ATPase family associated with various cellula 88.58
KOG0731 774 consensus AAA+-type ATPase containing the peptidas 88.2
TIGR02500410 type_III_yscD type III secretion apparatus protein 87.85
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 87.11
TIGR01243 733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 86.5
CHL00206 2281 ycf2 Ycf2; Provisional 85.66
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 84.36
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 84.09
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 83.77
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 83.49
KOG0734 752 consensus AAA+-type ATPase containing the peptidas 83.39
KOG2045 1493 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involve 83.33
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 82.56
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 82.37
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 81.77
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.39  E-value=2.9e-13  Score=147.80  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=97.1

Q ss_pred             CCcccceeeeccCCCCCceeeecceEEEecccccceeecCCCcccceeEEEEE----------ec-CCCceEEEEEecCC
Q 004011          129 GSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------EN-GGPSGALLEITGGK  197 (779)
Q Consensus       129 ~~~~pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~~iS~~hCkI~r~----------e~-gg~~va~LEd~ssN  197 (779)
                      ....||+||+-..-..+++++.+++||+||+..||+.++...+|..|++|...          .+ +...++||+|.++|
T Consensus        41 ~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~n  120 (475)
T KOG0615|consen   41 ATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRN  120 (475)
T ss_pred             ccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccC
Confidence            34678999999999999999999999999999999999998888888877543          22 23468999999999


Q ss_pred             ceEEECCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCc
Q 004011          198 GEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSD  238 (779)
Q Consensus       198 GtV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~  238 (779)
                      || |||.+.++||.+.+|+|||||.++.+.+++|+|.+++-
T Consensus       121 GT-~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~  160 (475)
T KOG0615|consen  121 GT-FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSR  160 (475)
T ss_pred             cc-cccHhHhhccccccccCCCEEEeccchhheeeeecccc
Confidence            96 99999999999999999999999999999999999743

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2045 consensus 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query779
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 2e-18
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 7e-10
3pie_A1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 7e-07
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 2e-06
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 6e-05
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 7e-05
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 1e-04
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 4e-04
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 133 PWARLISQCSQN--SHLSMTGAVFTVGHNRQCDLYL-KDPSISKNLCRLRRIENGGPSGA 189
           PW RL+   ++    H+ +    +T+G  R CDL    +  +S + CR+   E  G    
Sbjct: 3   PWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--V 60

Query: 190 LLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKH-----SYIFQQLSDD 239
            LE T   G   +N     K     L+ GD +             +Y+++ LS+ 
Sbjct: 61  TLEDTSTSG-TVINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query779
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.83
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.78
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.67
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.66
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.66
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.53
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.51
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.5
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.44
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.43
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.43
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.4
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.38
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.38
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.34
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.34
3po8_A100 RV0020C protein, putative uncharacterized protein 99.33
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.33
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.29
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.27
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.27
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.27
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.26
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.23
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.22
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.2
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.2
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.19
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.16
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.97
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 98.92
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 98.9
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.86
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.8
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 98.66
3huf_A325 DNA repair and telomere maintenance protein NBS1; 98.31
1wv3_A238 Similar to DNA segregation ATPase and related prot 97.97
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 97.94
4a0e_A123 YSCD, type III secretion protein; transport protei 97.92
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 97.84
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 97.83
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 97.82
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 97.81
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 97.68
3cf2_A806 TER ATPase, transitional endoplasmic reticulum ATP 97.52
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 96.13
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 96.04
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 95.91
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 95.6
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 95.59
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 95.59
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 95.38
3cf2_A 806 TER ATPase, transitional endoplasmic reticulum ATP 95.33
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 94.77
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 94.01
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 94.01
1g41_A 444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 93.97
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 93.56
2r62_A268 Cell division protease FTSH homolog; ATPase domain 93.52
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 93.24
3pie_A1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 93.2
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 92.75
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 91.31
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 90.83
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 89.96
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 89.93
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 89.61
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 87.46
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 85.83
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 85.66
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 85.45
2c9o_A 456 RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- 85.4
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 84.4
1ypw_A806 Transitional endoplasmic reticulum ATPase; AAA, P9 83.94
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 83.57
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 82.29
1ypw_A 806 Transitional endoplasmic reticulum ATPase; AAA, P9 81.93
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 80.59
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
Probab=99.83  E-value=1.9e-20  Score=176.44  Aligned_cols=111  Identities=24%  Similarity=0.366  Sum_probs=97.9

Q ss_pred             CCcccceeeeccCCCCCceeeecceEEEecccccceeecCCC---------cccceeEEEEEecCC-CceEEEEEecCCc
Q 004011          129 GSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENGG-PSGALLEITGGKG  198 (779)
Q Consensus       129 ~~~~pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~~---------iS~~hCkI~r~e~gg-~~va~LEd~ssNG  198 (779)
                      ....+||+|++++..++.+.|....|+|||+..||++|.+..         ||..||+|.+...++ ...++|+|+|+||
T Consensus        25 ~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG  104 (149)
T 1gxc_A           25 PTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG  104 (149)
T ss_dssp             ----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC
T ss_pred             CCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCC
Confidence            445689999999999999999999999999999999999984         999999999875432 3469999999999


Q ss_pred             eEEECCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCccc
Q 004011          199 EVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT  240 (779)
Q Consensus       199 tV~VNGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~e~  240 (779)
                      | ||||++|.+|..+.|++||+|.|+.+...+|+|+++..++
T Consensus       105 T-~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~  145 (149)
T 1gxc_A          105 T-FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD  145 (149)
T ss_dssp             E-EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred             e-EECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence            6 9999999999999999999999999988999999987653
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 779
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 2e-17
d1lgpa_113 b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { 2e-10
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-07
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 1e-06
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 4e-05
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 1e-04
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 1e-04
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 2e-04
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-04
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 2e-17
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 133 PWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDP---------SISKNLCRLRRIEN 183
           PWARL +     ++L      +  G ++ C+    +P         + SK   R+ R   
Sbjct: 1   PWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG 60

Query: 184 GGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239
              S              VN  +  K  +  L    E+  S S    ++F  L+ D
Sbjct: 61  PKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 116
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query779
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.91
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.8
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.56
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.49
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.4
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.36
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.36
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.32
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.26
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.2
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.2
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.0
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 98.19
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 97.0
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 96.89
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 96.34
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 96.27
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.12
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.1
d1g41a_ 443 HslU {Haemophilus influenzae [TaxId: 727]} 95.38
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 95.17
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 94.14
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 93.9
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 93.7
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 89.91
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 89.23
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 88.54
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 86.71
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 86.07
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 84.65
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 84.57
d1svma_362 Papillomavirus large T antigen helicase domain {Si 80.94
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=194.26  Aligned_cols=105  Identities=25%  Similarity=0.394  Sum_probs=97.7

Q ss_pred             cceeeeccCCCCCceeeecceEEEecccccceeecCC---------CcccceeEEEEEecC-CCceEEEEEecCCceEEE
Q 004011          133 PWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDP---------SISKNLCRLRRIENG-GPSGALLEITGGKGEVEV  202 (779)
Q Consensus       133 pWGRLlSq~sq~P~v~I~~~~fTvGR~~~CDl~L~d~---------~iS~~hCkI~r~e~g-g~~va~LEd~ssNGtV~V  202 (779)
                      |||||+|+.+.+|+++|.++.|+|||+..||++|.++         .||+.||+|++...+ +..++||+|.|+||| ||
T Consensus         1 PwgrL~~~~~~~~~~~L~~~~~~iGR~~~cdi~l~~~~~~~~~~~~~ISr~H~~I~~~~~~~~~~~~~i~d~S~NGT-~v   79 (116)
T d1gxca_           1 PWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT-FV   79 (116)
T ss_dssp             CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCE-EE
T ss_pred             CeEEEEecCCCCceEEeCCCCEEeeeCCCCCeEecCCccccccccceEecceEEEEEecccCCCCEEEEECCCccCc-eE
Confidence            8999999999999999999999999999999999885         699999999987543 357799999999996 99


Q ss_pred             CCeecCCCceEEeeCCCEEEEccCCCeeEEEeecCc
Q 004011          203 NGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSD  238 (779)
Q Consensus       203 NGkkVgKg~kviL~nGDEIvfs~~~~~aYIFq~l~~  238 (779)
                      ||++|+||+.+.|++||+|.|+.+..++|+|.++..
T Consensus        80 N~~~i~~~~~~~L~~gD~I~ig~~~~~~f~f~d~~~  115 (116)
T d1gxca_          80 NTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTV  115 (116)
T ss_dssp             TTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTC
T ss_pred             CCEEcCCCCEEECCCCCEEEECCCEeEEEEEEEccC
Confidence            999999999999999999999999999999999854
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure