Citrus Sinensis ID: 004015
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H6U6 | 928 | Breast carcinoma-amplifie | yes | no | 0.386 | 0.324 | 0.298 | 4e-34 | |
| Q8CCN5 | 928 | Breast carcinoma-amplifie | yes | no | 0.376 | 0.315 | 0.286 | 1e-33 | |
| Q8SY41 | 1122 | Breast carcinoma-amplifie | yes | no | 0.341 | 0.237 | 0.291 | 4e-28 | |
| Q7ZWU5 | 435 | WD repeat domain phosphoi | N/A | no | 0.196 | 0.351 | 0.291 | 3e-09 | |
| Q75F47 | 537 | Autophagy-related protein | yes | no | 0.331 | 0.480 | 0.247 | 1e-08 | |
| Q6BIL4 | 562 | Autophagy-related protein | yes | no | 0.279 | 0.387 | 0.221 | 2e-08 | |
| P43601 | 500 | Autophagy-related protein | yes | no | 0.344 | 0.536 | 0.241 | 4e-08 | |
| A7A258 | 500 | Autophagy-related protein | N/A | no | 0.344 | 0.536 | 0.241 | 4e-08 | |
| Q5ZHN3 | 436 | WD repeat domain phosphoi | no | no | 0.181 | 0.323 | 0.284 | 4e-08 | |
| Q54NA2 | 372 | Autophagy-related protein | no | no | 0.132 | 0.276 | 0.316 | 5e-08 |
| >sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 176/372 (47%), Gaps = 71/372 (19%)
Query: 2 QMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSS 61
++LP P + D FAE RPLL C +S G+ +GTS Y
Sbjct: 127 RILPAPQFGAQKCDNFAEKRPLLGVC----KSIGS----------SGTSPPY-------- 164
Query: 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN 121
V YSLR+ V ++F++PIY + C+ R++ + ++ FD+ T ++ + +
Sbjct: 165 --CCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSC 222
Query: 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 181
+P G P+A+G RWLAY+ + ++ + QSR + G
Sbjct: 223 -----YPCPGP---NMNPIALGSRWLAYAENKLIRCH----------QSRG----GACGD 260
Query: 182 RVAHYAK---ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 238
+ Y ++K L +G+ +G K+ + LP AI SN +
Sbjct: 261 NIQSYTATVISAAKTLKSGLTMVG-----KVVTQLTGTLPSGVTEDDVAI---HSNSRRS 312
Query: 239 GHFP------DADNVG---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289
P D + VG +++ D S ++A F AH+ P+ + F+ SG+LLVT
Sbjct: 313 PLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTL 372
Query: 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349
GH+ ++F+I+ +SS C + HLY L RG T A +QDI FS D W+++S+ RG
Sbjct: 373 GHDFHVFQILTHPW-SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRG 427
Query: 350 TSHLFAINPLGG 361
TSH+F INP GG
Sbjct: 428 TSHVFPINPYGG 439
|
Homo sapiens (taxid: 9606) |
| >sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 87/380 (22%)
Query: 2 QMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSS 61
++LP P + D FAE RPLL C +S G+ +GT+ Y
Sbjct: 127 RILPAPQLGAQKCDNFAEKRPLLGVC----KSIGS----------SGTTPPY-------- 164
Query: 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN 121
V YSLR+ V ++F++PIY + C+ R++ + ++ FD+ T ++ + +
Sbjct: 165 --CCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSC 222
Query: 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 181
+P G P+A+G RWLAY+ + ++ + QSR + G
Sbjct: 223 -----YPCPGP---NMNPIALGSRWLAYAENKLIRCH----------QSRG----GACGD 260
Query: 182 RVAHYAK---ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 238
+ Y ++K L +G+ +G K ++Q L +P G + V
Sbjct: 261 NIQSYTATVLSAAKTLKSGLTMVG----KVVTQ------------LTGTLPSGVTEDDVA 304
Query: 239 GH--------------FPDADNVG---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 281
H D + VG +++ D S ++A F AH+ P+ + F+ SG+
Sbjct: 305 LHCNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGM 364
Query: 282 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 341
LLVT GH+ ++F+I+ +SS C + HLY L RG T A +QDI FS D W
Sbjct: 365 LLVTTDTLGHDFHVFQILTHPW-SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRW 419
Query: 342 IMISSSRGTSHLFAINPLGG 361
+++S+ RGTSH+F INP GG
Sbjct: 420 VVVSTLRGTSHVFPINPYGG 439
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Mus musculus (taxid: 10090) |
| >sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 152/329 (46%), Gaps = 63/329 (19%)
Query: 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPI 123
+ V+F SL++ V +KF++ + ++ + V I ++ FDA TLE I T
Sbjct: 229 SAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTC-- 286
Query: 124 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV 183
+PS G I P+A+GPRWLAY+ +H + SG +G V
Sbjct: 287 ---YPSPG---INPNPIALGPRWLAYA--------------EHKLLHSKRSGGGCDGEGV 326
Query: 184 AHYAK---ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
Y ++K L+ G+ G+ L+ + S++S + GG
Sbjct: 327 PSYTATVLNAAKSLSKGLREFGEQVAAGLTGTTAGSGASSKSSSFDSASGG--------- 377
Query: 241 FPDADNVGMVIVRDIV-----------------------SKNVIAQFRAHKSPISALCFD 277
PDA G+V + D+ ++A F AH + A+ FD
Sbjct: 378 -PDAKQSGVVTIIDVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFD 436
Query: 278 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337
SG+LL+TA +GH+ ++F++ P +G S A HLY L RG T+A +Q I+FS
Sbjct: 437 SSGMLLLTADRRGHDFHVFRVQPHPVGPSLAA-----VHHLYVLHRGDTSAKVQHIAFSL 491
Query: 338 DSNWIMISSSRGTSHLFAINPLGGSVNFQ 366
DS W +S+ RGT+H+F I P GG++ +
Sbjct: 492 DSRWAAVSTLRGTTHVFPITPYGGAMGVR 520
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q7ZWU5|WIPI2_XENLA WD repeat domain phosphoinositide-interacting protein 2 OS=Xenopus laevis GN=wipi2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 229 PGGKSNGTVNGH-----FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL 283
P G + ++NG +P + ++G V V D V+ AH SP++AL FD SG L
Sbjct: 140 PSGLCSLSINGENCYLAYPGSASIGEVQVFDTVNLRAANMIPAHDSPLAALAFDASGTKL 199
Query: 284 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWI 342
TAS +G I +F I G L+ +RG+ V I ++FS DS ++
Sbjct: 200 ATASEKGTVIRVFSIPEG--------------QKLFEFRRGVKRCVSICSLAFSMDSIFL 245
Query: 343 MISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQ 397
SS+ T H+F + + +PT ++T G + + + P+ +M NQ
Sbjct: 246 SASSNTETVHIFKLETIKEKPPEEPT--SWTGYFGRVIMASTSYLPSQVTEMFNQ 298
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Probable early component of the autophagy machinery being involved in formation of preautophagosomal structures and their maturation into mature phagosomes in response to PtdIns3P. May bind PtdIns3P. Xenopus laevis (taxid: 8355) |
| >sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 49/307 (15%)
Query: 58 NGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEY 116
N S P + + + S + + F + I +V+ + SR+V + Q Q++ +D ++ + Y
Sbjct: 68 NPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQE-QIYIYDINSMRLLY 126
Query: 117 AILT--NPIVMGHPSAGGIGIGYGPLAVGP----RWLAYSGSPVVVSNDGRVNPQ-HLMQ 169
I T NP G +++ P +LAY P V+++ + N + +
Sbjct: 127 TIETSSNP--------------RGLISMSPSLENNYLAYPSPPKVINSGIKSNANTNNIG 172
Query: 170 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP 229
+ S A GS Y + ++ L DL K S + P ++S S +
Sbjct: 173 ISARSSIAEGGS---EYLDKGTEPLTDSSKAGADLNSVKASTETT-ISPGKEHSAGSGLN 228
Query: 230 GGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289
S+GTV G VI ++ + AHK I+AL G LL TAS +
Sbjct: 229 ATSSSGTVKN--------GDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLATASEK 280
Query: 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349
G I +F + C +Y+ +RG I ++FSDD+ ++ SSS
Sbjct: 281 GTIIRVFSV--------ETC------TKVYQFRRGTYPTRIYSLNFSDDNEFLAASSSNK 326
Query: 350 TSHLFAI 356
T H+F +
Sbjct: 327 TVHIFKL 333
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Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
| >sp|Q6BIL4|ATG18_DEBHA Autophagy-related protein 18 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 80/298 (26%)
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
S P + + R QS + L F S I V+ S + I Q++ +D T+++ + I T
Sbjct: 103 SSPRKLKIINTRRQSTICELIFPSTILQVKLSKSRMIILLEEQIYIYDVTTMKLLHTIET 162
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPR--WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 178
+P + G+ G +LAY P +++D + +G +
Sbjct: 163 SP------NGNGLCTLSADNCDGKNNSYLAYPSPPKTITHDSLL----------VNGINT 206
Query: 179 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 238
NG + QN++QS SN
Sbjct: 207 NGG-----------------------------------MNSIQNNIQSV-----SNS--- 223
Query: 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298
+ +G VI+ + + ++ AHKS ++A+ G LL TAS +G + +F +
Sbjct: 224 -----PNRIGDVIIFNTTTLQPLSVIEAHKSALAAITLSTDGTLLATASDKGTIVRVFSV 278
Query: 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356
G+ LY+ +RG I +SFS D+ +++ +SS GT H+F +
Sbjct: 279 ATGL--------------KLYQFRRGTYPTKIFTLSFSFDNKYVLATSSSGTVHIFRL 322
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Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) |
| >sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 51/319 (15%)
Query: 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 121
P + + + S + + F + I SV+ + SR+V + Q Q++ +D T+ + + I TN
Sbjct: 72 PRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQE-QIYIYDINTMRLLHTIETN 130
Query: 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 181
P +P G+ +V +L Y P V++++ + + + + + G+
Sbjct: 131 P----NPR----GLMAMSPSVANSYLVYPSPPKVINSEIKAH-----ATTNNITLSVGGN 177
Query: 182 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF 241
+ ++ AG ++ DL QY S D + S GG S+ NG
Sbjct: 178 TETSFKRDQQD---AGHSDISDL-----DQYSSFTKRDDADPTSSN--GGNSSIIKNGD- 226
Query: 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301
VIV ++ + AHK I+A+ G L+ TAS +G I +F I G
Sbjct: 227 --------VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETG 278
Query: 302 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
+Y+ +RG I ISFS+DS ++ ++ S T H+F LG
Sbjct: 279 --------------DKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFK---LGH 321
Query: 362 SVNFQPTDANFTTKHGAMA 380
S++ D++ + A A
Sbjct: 322 SMSNNKLDSDDSNMEEAAA 340
|
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 51/319 (15%)
Query: 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 121
P + + + S + + F + I SV+ + SR+V + Q Q++ +D T+ + + I TN
Sbjct: 72 PRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQE-QIYIYDINTMRLLHTIETN 130
Query: 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 181
P +P G+ +V +L Y P V++++ + + + + + G+
Sbjct: 131 P----NPR----GLMAMSPSVANSYLVYPSPPKVINSEIKAH-----ATTNNITLSVGGN 177
Query: 182 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF 241
+ ++ AG ++ DL QY S D + S GG S+ NG
Sbjct: 178 TETSFKRDQQD---AGHSDISDL-----DQYSSFTKRDDADPTSSN--GGNSSIIKNGD- 226
Query: 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301
VIV ++ + AHK I+A+ G L+ TAS +G I +F I G
Sbjct: 227 --------VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETG 278
Query: 302 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
+Y+ +RG I ISFS+DS ++ ++ S T H+F LG
Sbjct: 279 --------------DKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFK---LGH 321
Query: 362 SVNFQPTDANFTTKHGAMA 380
S++ D++ + A A
Sbjct: 322 SMSNNKLDSDDSNMEEAAA 340
|
Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) |
| >sp|Q5ZHN3|WIPI2_CHICK WD repeat domain phosphoinositide-interacting protein 2 OS=Gallus gallus GN=WIPI2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
+P + +G V V D ++ AH SP++AL FD SG L TAS +G I +F I
Sbjct: 157 YPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPE 216
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPL 359
G L+ +RG+ V I ++FS D ++ SS+ T H+F + +
Sbjct: 217 G--------------QKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETV 262
Query: 360 GGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQ 397
+PT +T G + + + P+ +M NQ
Sbjct: 263 KEKPQEEPT--TWTGYFGKVLMASTSYLPSQVTEMFNQ 298
|
Probable early component of the autophagy machinery being involved in formation of preautophagosomal structures and their maturation into mature phagosomes in response to PtdIns3P. May bind PtdIns3P. Gallus gallus (taxid: 9031) |
| >sp|Q54NA2|ATG18_DICDI Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
+P + N G ++V D+++ + +AHKS ISAL G LL TAS +G I +F +
Sbjct: 151 YPASQNNGNILVMDVLTLETVNLIQAHKSQISALALSQDGTLLATASDKGTVIRVFAL-- 208
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357
+ S+ +RG A+I ++FS D ++ +SS GT H+F I+
Sbjct: 209 ------PYANKSLSF------RRGSIPAIIHSMTFSLDGRYLCVSSDTGTIHIFKID 253
|
May be involved in cytoplasm to vacuole transport and autophagy. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| 255563665 | 891 | breast carcinoma amplified sequence, put | 0.991 | 0.866 | 0.705 | 0.0 | |
| 147808145 | 893 | hypothetical protein VITISV_005771 [Viti | 0.991 | 0.864 | 0.692 | 0.0 | |
| 225461122 | 922 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.837 | 0.692 | 0.0 | |
| 357452691 | 901 | Autophagy-related protein [Medicago trun | 0.961 | 0.831 | 0.617 | 0.0 | |
| 357452689 | 914 | Autophagy-related protein [Medicago trun | 0.961 | 0.819 | 0.617 | 0.0 | |
| 224126297 | 742 | predicted protein [Populus trichocarpa] | 0.789 | 0.828 | 0.686 | 0.0 | |
| 224117404 | 702 | predicted protein [Populus trichocarpa] | 0.780 | 0.866 | 0.695 | 0.0 | |
| 356545163 | 900 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.848 | 0.599 | 0.0 | |
| 356514980 | 901 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.852 | 0.588 | 0.0 | |
| 449468504 | 907 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.835 | 0.586 | 0.0 |
| >gi|255563665|ref|XP_002522834.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223537918|gb|EEF39532.1| breast carcinoma amplified sequence, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/782 (70%), Positives = 622/782 (79%), Gaps = 10/782 (1%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQ+LP+PI SKRS DKFAE RP+LV C DG+ S + DGL + C G+ N H+ G+G+
Sbjct: 117 MQLLPKPIASKRSEDKFAESRPILVVCTDGTISGVNDISDGLPSQCYGSIPNCHESGSGN 176
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
VPT+V FYSLRSQSY+HMLKFRS +YSVRCSSR+VAI QAAQ+HCFDA TLE EY ILT
Sbjct: 177 FVPTIVRFYSLRSQSYIHMLKFRSIVYSVRCSSRIVAISQAAQIHCFDATTLEREYTILT 236
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPIV G+P +GG+G YGPLAVGPRWLAYSGSPV +S+ GRV+PQHL S SFSGF SNG
Sbjct: 237 NPIVTGYPGSGGLG--YGPLAVGPRWLAYSGSPVAISSSGRVSPQHLTSSASFSGFNSNG 294
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSK LAAGIV LGD+GYKK S+YCSE LPDS +S QSA PG K+N TVNGH
Sbjct: 295 SLVAHYAKESSKQLAAGIVMLGDMGYKKFSRYCSELLPDSHSSFQSANPGWKANSTVNGH 354
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
PDADNVGMV+VRDIV K VIAQFRAH+SPISALCFDPSG LLVTASV GHNIN+FKI+P
Sbjct: 355 LPDADNVGMVVVRDIVGKLVIAQFRAHRSPISALCFDPSGTLLVTASVHGHNINVFKIMP 414
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
GI G+SSA DAG SY HLYRLQRG TNAVIQDISFSDDSNWIMISSSRGT+HLFAINP G
Sbjct: 415 GIQGSSSAGDAGASYTHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTNHLFAINPFG 474
Query: 361 GSVNFQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G VNFQ AN++ K+ G M KS VRWP +LGLQM NQQSLCASGPPVTLSVVSRIRN
Sbjct: 475 GPVNFQTLIANYSAKNSESGVMTKSAVRWPSSLGLQMHNQQSLCASGPPVTLSVVSRIRN 534
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
GNNGW+G+V+GAAAAATGR+SSLSGAIASSFHNCKGN++ Y G+ LK K HLLVFSPSG
Sbjct: 535 GNNGWKGSVTGAAAAATGRLSSLSGAIASSFHNCKGNNDLYLDGTILKSKYHLLVFSPSG 594
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
CMIQY LRIS G+D VPGLG+A++SVPE D RLVVEAIQKWNICQK RREREDN+D
Sbjct: 595 CMIQYVLRISAGIDSMAVVPGLGTAFESVPESDGRLVVEAIQKWNICQKLNRREREDNVD 654
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIP 597
IYG+NG DSNKIYPE K GN E G K K++PE+KHHLYISEAELQMH P
Sbjct: 655 IYGENGISDSNKIYPEGKKKGNSVHPEGMGATIKEKINPEEKHHLYISEAELQMHQPHTA 714
Query: 598 LWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQ 657
LWAKP+IYFQ MM + KM EN + GEIE+ER PTR IEARSKDLVPVFDY +
Sbjct: 715 LWAKPEIYFQPMMTEGIKMDGENAMLGEIEVERLPTRTIEARSKDLVPVFDYHR-----Y 769
Query: 658 ARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDC 717
ARVP + N N + HQRS LSENG +S RSSS SLD +T GA+AAE G+EET +
Sbjct: 770 ARVPALDNNINVQPQHQRSVLSENGRISCRSSSCSLDCMTDCGAVAAERRNGVEETGWND 829
Query: 718 PQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDE 777
+MP + G+VN+S K T + VN+ +SLR EAQLK VNS G RMENHFEDEGDE
Sbjct: 830 SRMPSEVMGYVNSSDGSKIDTPLDNVNSRDSLRTEAQLKLVNSNNGGPRMENHFEDEGDE 889
Query: 778 FD 779
FD
Sbjct: 890 FD 891
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147808145|emb|CAN75263.1| hypothetical protein VITISV_005771 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/787 (69%), Positives = 619/787 (78%), Gaps = 15/787 (1%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
+QMLP P+ SK S+DKFA+ RPLLV C+DGS S G +QDG T N HD NGS
Sbjct: 114 LQMLPNPVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKEGIPNSHDTVNGS 173
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
++PTVV FYSL+SQS+VH LKFRS +YSVRCSSRVVAI QAAQ+HCFD ATLE EY ILT
Sbjct: 174 AMPTVVRFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFDVATLEREYTILT 233
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPIV G S+G IG YGPLAVGPRWLAYSGSPVVVSN GRV+PQHL S SFSG ASNG
Sbjct: 234 NPIVTGSLSSGSIG--YGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLTTSGSFSGSASNG 291
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG--GKSNGTVN 238
S VAHYAKESSK LAAGIV+LGD+GYKKLS+YCSE LPDS N S PG K NG VN
Sbjct: 292 SLVAHYAKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGSPGPGWKGNGAVN 351
Query: 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298
HFPDADNVGMVIVRDI++K+VI QF+AHKSPISALCFDPSG LLVTASVQGHNIN+F+I
Sbjct: 352 AHFPDADNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTASVQGHNINVFRI 411
Query: 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358
+PG+ G+SS D SY HLYRLQRG TNAVIQDISFSDDSNWIMISSSRGTSHLFAI+P
Sbjct: 412 MPGVAGSSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAISP 471
Query: 359 LGGSVNFQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRI 415
GGSVN QP+D++ T K+ G K VRWPPN GLQM +QQ+ CASGPPVTLSVVSRI
Sbjct: 472 SGGSVNLQPSDSSPTAKNSGLGVPTKPAVRWPPNSGLQMLSQQNFCASGPPVTLSVVSRI 531
Query: 416 RNGNNGWRGTVSG---AAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLV 472
R+GNNGWRGTV+G AAAAATGR+SSLSGAIASSFHNCK N + ++ SSLK K HLLV
Sbjct: 532 RSGNNGWRGTVTGAAAAAAAATGRMSSLSGAIASSFHNCKAN-DLFSNSSSLKEKYHLLV 590
Query: 473 FSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARRER 532
FSPSGC+IQYALRISTG+D T V GL + Y+S P+ D RLVVEA+QKWN+CQKQ RRER
Sbjct: 591 FSPSGCVIQYALRISTGIDSTTVVSGLSTGYESTPDGDGRLVVEAVQKWNVCQKQHRRER 650
Query: 533 EDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMH 592
EDN DIYG+NG DS+KI+PE +K N E + K+K+SPE++HHLYISEAELQMH
Sbjct: 651 EDNTDIYGENGNTDSSKIFPEGIKKENAFHPETRSGVSKSKISPEERHHLYISEAELQMH 710
Query: 593 PPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQS 652
+ PLWAKP+IYFQ+MM+ EEN L GEIE+ERFPTRMIEARSKDLVPVFDYLQ+
Sbjct: 711 QAQNPLWAKPEIYFQTMMVDGL---EENVLGGEIEVERFPTRMIEARSKDLVPVFDYLQT 767
Query: 653 PKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEE 712
PKF +ARVP + N N LH +SG SENG LSRRSSSGSLD V G AE GIEE
Sbjct: 768 PKFQKARVPVLDSNINGHPLHHKSGPSENGRLSRRSSSGSLDLVADGGVAVAEHPTGIEE 827
Query: 713 TSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFE 772
T + +MP KGFVN++ PKTKT + VNN ES ++EAQ KFVN+ +GL +EN E
Sbjct: 828 TGWNGLRMPETDKGFVNSNDRPKTKTL-KTVNNRESFKMEAQHKFVNNNKDGLNVENQLE 886
Query: 773 DEGDEFD 779
D DEFD
Sbjct: 887 DADDEFD 893
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461122|ref|XP_002279886.1| PREDICTED: uncharacterized protein LOC100265881 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/787 (69%), Positives = 619/787 (78%), Gaps = 15/787 (1%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
+QMLP P+ SK S+DKFA+ RPLLV C+DGS S G +QDG T N HD NGS
Sbjct: 143 LQMLPNPVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKEGIPNSHDTVNGS 202
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
++PTVV FYSL+SQS+VH LKFRS +YSVRCSSRVVAI QAAQ+HCFD ATLE EY ILT
Sbjct: 203 AMPTVVRFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFDVATLEREYTILT 262
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPIV G S+G IG YGPLAVGPRWLAYSGSPVVVSN GRV+PQHL S SFSG ASNG
Sbjct: 263 NPIVTGSLSSGSIG--YGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLTTSGSFSGSASNG 320
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG--GKSNGTVN 238
S VAHYAKESSK LAAGIV+LGD+GYKKLS+YCSE LPDS N S PG K NG VN
Sbjct: 321 SLVAHYAKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGSPGPGWKGNGAVN 380
Query: 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298
HFPDADNVGMVIVRDI++K+VI QF+AHKSPISALCFDPSG LLVTASVQGHNIN+F+I
Sbjct: 381 AHFPDADNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTASVQGHNINVFRI 440
Query: 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358
+PG+ G+SS D SY HLYRLQRG TNAVIQDISFSDDSNWIMISSSRGTSHLFAI+P
Sbjct: 441 MPGVAGSSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAISP 500
Query: 359 LGGSVNFQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRI 415
GGSVN QP+D++ T K+ G K VRWPPN GLQM +QQ+ CASGPPVTLSVVSRI
Sbjct: 501 SGGSVNLQPSDSSPTAKNSGLGVPTKPAVRWPPNSGLQMLSQQNFCASGPPVTLSVVSRI 560
Query: 416 RNGNNGWRGTVSG---AAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLV 472
R+GNNGWRGTV+G AAAAATGR+SSLSGAIASSFHNCK N + ++ SSLK K HLLV
Sbjct: 561 RSGNNGWRGTVTGAAAAAAAATGRMSSLSGAIASSFHNCKAN-DLFSNSSSLKEKYHLLV 619
Query: 473 FSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARRER 532
FSPSGC+IQYALRISTG+D T V GL + Y+S P+ D RLVVEA+QKWN+CQKQ RRER
Sbjct: 620 FSPSGCVIQYALRISTGIDSTTVVSGLSTGYESTPDGDGRLVVEAVQKWNVCQKQHRRER 679
Query: 533 EDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMH 592
EDN DIYG+NG DS+KI+PE +K N E + K+K+SPE++HHLYISEAELQMH
Sbjct: 680 EDNTDIYGENGNTDSSKIFPEGIKKENAFHPETRSGVSKSKISPEERHHLYISEAELQMH 739
Query: 593 PPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQS 652
+ PLWAKP+IYFQ+MM+ EEN L GEIE+ERFPTRMIEARSKDLVPVFDYLQ+
Sbjct: 740 QAQNPLWAKPEIYFQTMMVDGL---EENVLGGEIEVERFPTRMIEARSKDLVPVFDYLQT 796
Query: 653 PKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEE 712
PKF +ARVP + N N LH +SG SENG LSRRSSSGSLD V G AE GIEE
Sbjct: 797 PKFQKARVPVLDSNINGHPLHHKSGPSENGRLSRRSSSGSLDLVADGGVAVAEHPTGIEE 856
Query: 713 TSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFE 772
T + +MP KGFVN++ PKTKT + VNN ES ++EAQ KFVN+ +GL +EN E
Sbjct: 857 TGWNGLRMPETDKGFVNSNDRPKTKTL-KTVNNRESFKMEAQHKFVNNNKDGLNVENQLE 915
Query: 773 DEGDEFD 779
D DEFD
Sbjct: 916 DADDEFD 922
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357452691|ref|XP_003596622.1| Autophagy-related protein [Medicago truncatula] gi|355485670|gb|AES66873.1| Autophagy-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/767 (61%), Positives = 561/767 (73%), Gaps = 18/767 (2%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQM+P PI SK+S DKFA RPLLV CADG G+ ++DGL + NGT++N HD NG+
Sbjct: 128 MQMVPNPIASKKSEDKFASSRPLLVVCADGFFGGGSNIKDGLTGSPNGTASNSHDQMNGN 187
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+PT V FYS++S SYVH++KFRS +YSVRCSSR++A+ Q+ Q+HCF+A TLE EY +LT
Sbjct: 188 YMPTTVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIIAVSQSTQIHCFNATTLEREYTLLT 247
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPI + P +G GIGYGPLAVGPRWLAYSGSPV VS V+PQHL S SF GF+SN
Sbjct: 248 NPIALSCPGSG--GIGYGPLAVGPRWLAYSGSPVAVSTSSHVSPQHLTPSASFPGFSSNS 305
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S +AHYAKESSKHLA GIV LGD+GYKKLS+YCS D+ S+QS G K NG++NGH
Sbjct: 306 SLIAHYAKESSKHLATGIVTLGDMGYKKLSRYCS----DNIGSVQSVNSGSKVNGSINGH 361
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
D DNVGMVIV+DIV+KNV+AQFRAHKSPISALCFDPSG +LVTASVQGHNIN+FKI+P
Sbjct: 362 SADLDNVGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMP 421
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
+ SSA DAG S+VHLYRLQRG TNAVIQDISFSDDS WIMISSSRGT+HLFAINP G
Sbjct: 422 -LRENSSASDAGPSHVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTNHLFAINPQG 480
Query: 361 GSVNFQPTDANFTTKHGAMAKS---GVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G VN Q D NF TK ++ + VR L +QMP QQSL GPP+TLSVVSRIRN
Sbjct: 481 GYVNIQSNDDNFNTKTNGLSTATNQSVRRASILAVQMPKQQSLYVGGPPITLSVVSRIRN 540
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
GNNGWRGTVSGAAAAATGR S L GAIASSF NCKG+ Y G++ K +HLLVFSPSG
Sbjct: 541 GNNGWRGTVSGAAAAATGRKSPLYGAIASSFRNCKGSGAVYGDGNNSKANHHLLVFSPSG 600
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
MIQYALR TG D + V GL A++S P+ + RLVVEA+ KWNIC +RREREDN+D
Sbjct: 601 SMIQYALRTITGQDSAV-VSGLSPAHESTPQAEARLVVEAMHKWNICHSHSRREREDNVD 659
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSP--EDKHHLYISEAELQMHPPR 595
IYG+NG DSNKIYPE V + NGV TKV+P +++HHLYISEAELQMH +
Sbjct: 660 IYGENGIADSNKIYPEVVDEDIIIPKMRNGV---TKVNPCLKEEHHLYISEAELQMHQTQ 716
Query: 596 IPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKF 655
IPLW KP+IYF M+ + M EE+ GE EIER PT MIEAR KDLVP+F+Y+Q+PK
Sbjct: 717 IPLWVKPEIYFNPMLKESTIMDEEDASGGEFEIERIPTCMIEARPKDLVPIFNYMQAPKL 776
Query: 656 SQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSV-TVNGALAAEPNIGIEETS 714
Q R P + R NE++LH RS NG +S RS S + + + G + E IE T
Sbjct: 777 QQTRAPAMDRKINEQVLHHRSESYGNGRISPRSVSETPEYMNNYGGEVITEHENHIEGTE 836
Query: 715 LDCPQMPVDTKGFVNNSVSPKTKTRHEIVNN-SESLRVEAQLKFVNS 760
MP +T GFVNN+ + K T+HEIVNN E L + AQL VNS
Sbjct: 837 WGNHVMPSETTGFVNNNDNLKPNTQHEIVNNRKEHLNMGAQLMLVNS 883
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357452689|ref|XP_003596621.1| Autophagy-related protein [Medicago truncatula] gi|355485669|gb|AES66872.1| Autophagy-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/767 (61%), Positives = 561/767 (73%), Gaps = 18/767 (2%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQM+P PI SK+S DKFA RPLLV CADG G+ ++DGL + NGT++N HD NG+
Sbjct: 128 MQMVPNPIASKKSEDKFASSRPLLVVCADGFFGGGSNIKDGLTGSPNGTASNSHDQMNGN 187
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+PT V FYS++S SYVH++KFRS +YSVRCSSR++A+ Q+ Q+HCF+A TLE EY +LT
Sbjct: 188 YMPTTVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIIAVSQSTQIHCFNATTLEREYTLLT 247
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPI + P +G GIGYGPLAVGPRWLAYSGSPV VS V+PQHL S SF GF+SN
Sbjct: 248 NPIALSCPGSG--GIGYGPLAVGPRWLAYSGSPVAVSTSSHVSPQHLTPSASFPGFSSNS 305
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S +AHYAKESSKHLA GIV LGD+GYKKLS+YCS D+ S+QS G K NG++NGH
Sbjct: 306 SLIAHYAKESSKHLATGIVTLGDMGYKKLSRYCS----DNIGSVQSVNSGSKVNGSINGH 361
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
D DNVGMVIV+DIV+KNV+AQFRAHKSPISALCFDPSG +LVTASVQGHNIN+FKI+P
Sbjct: 362 SADLDNVGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMP 421
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
+ SSA DAG S+VHLYRLQRG TNAVIQDISFSDDS WIMISSSRGT+HLFAINP G
Sbjct: 422 -LRENSSASDAGPSHVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTNHLFAINPQG 480
Query: 361 GSVNFQPTDANFTTKHGAMAKS---GVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G VN Q D NF TK ++ + VR L +QMP QQSL GPP+TLSVVSRIRN
Sbjct: 481 GYVNIQSNDDNFNTKTNGLSTATNQSVRRASILAVQMPKQQSLYVGGPPITLSVVSRIRN 540
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
GNNGWRGTVSGAAAAATGR S L GAIASSF NCKG+ Y G++ K +HLLVFSPSG
Sbjct: 541 GNNGWRGTVSGAAAAATGRKSPLYGAIASSFRNCKGSGAVYGDGNNSKANHHLLVFSPSG 600
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
MIQYALR TG D + V GL A++S P+ + RLVVEA+ KWNIC +RREREDN+D
Sbjct: 601 SMIQYALRTITGQDSAV-VSGLSPAHESTPQAEARLVVEAMHKWNICHSHSRREREDNVD 659
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSP--EDKHHLYISEAELQMHPPR 595
IYG+NG DSNKIYPE V + NGV TKV+P +++HHLYISEAELQMH +
Sbjct: 660 IYGENGIADSNKIYPEVVDEDIIIPKMRNGV---TKVNPCLKEEHHLYISEAELQMHQTQ 716
Query: 596 IPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKF 655
IPLW KP+IYF M+ + M EE+ GE EIER PT MIEAR KDLVP+F+Y+Q+PK
Sbjct: 717 IPLWVKPEIYFNPMLKESTIMDEEDASGGEFEIERIPTCMIEARPKDLVPIFNYMQAPKL 776
Query: 656 SQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSV-TVNGALAAEPNIGIEETS 714
Q R P + R NE++LH RS NG +S RS S + + + G + E IE T
Sbjct: 777 QQTRAPAMDRKINEQVLHHRSESYGNGRISPRSVSETPEYMNNYGGEVITEHENHIEGTE 836
Query: 715 LDCPQMPVDTKGFVNNSVSPKTKTRHEIVNN-SESLRVEAQLKFVNS 760
MP +T GFVNN+ + K T+HEIVNN E L + AQL VNS
Sbjct: 837 WGNHVMPSETTGFVNNNDNLKPNTQHEIVNNRKEHLNMGAQLMLVNS 883
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126297|ref|XP_002319804.1| predicted protein [Populus trichocarpa] gi|222858180|gb|EEE95727.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/663 (68%), Positives = 515/663 (77%), Gaps = 48/663 (7%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
+QMLP+P+TS+ S+DKFA RPLLV C+DG+ QDG AT+CNG +N + NGS
Sbjct: 126 LQMLPKPVTSEGSQDKFAYNRPLLVVCSDGA-------QDGPATSCNGNVSNNNYPVNGS 178
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+VPTVV FYSLRSQSYVH+LKFRS +YSVRCSSR+VAI Q+AQ+HCF+A TLE EY ILT
Sbjct: 179 TVPTVVRFYSLRSQSYVHVLKFRSAVYSVRCSSRIVAISQSAQIHCFNATTLEREYTILT 238
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NP+VMG P++GGIG YGPLAVGPRWLAYSGSPVVVSN G +NPQHL S SFSGF SNG
Sbjct: 239 NPMVMGSPASGGIG--YGPLAVGPRWLAYSGSPVVVSNSGCINPQHLTSSMSFSGFTSNG 296
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSK LAAGIV LGD+GYKKLS YCSE LPDS SLQS PG KSNGTVNGH
Sbjct: 297 SLVAHYAKESSKQLAAGIVTLGDMGYKKLSSYCSELLPDSHGSLQSGNPGWKSNGTVNGH 356
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
FPDADN+GMV+VRDIVSK VIAQFRAHKSPISALCFD SG LLVTAS+QGHNIN+FKI+P
Sbjct: 357 FPDADNIGMVVVRDIVSKLVIAQFRAHKSPISALCFDSSGTLLVTASIQGHNINVFKIMP 416
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
G+ G+SS G SYVHLYRLQRG TNAVIQDISFSDDS+WIMISSSRGTSHLFAINPLG
Sbjct: 417 GLQGSSS---TGASYVHLYRLQRGFTNAVIQDISFSDDSSWIMISSSRGTSHLFAINPLG 473
Query: 361 GSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNN 420
G+ SLCA+G VTLS VSRIRNGNN
Sbjct: 474 GT------------------------------------SLCATGRAVTLSAVSRIRNGNN 497
Query: 421 GWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMI 480
GWRGTV+GAAAAATGR+ SLSGAIASSFH CKGN++ Y G+S K K HLLVFS SG MI
Sbjct: 498 GWRGTVTGAAAAATGRLGSLSGAIASSFHKCKGNNDMYGDGTSFKSKYHLLVFSSSGSMI 557
Query: 481 QYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYG 540
QY LRI G+D T GL Y+S E++ RLVVEA+QKWNICQKQ RR+REDN+DIYG
Sbjct: 558 QYTLRILDGIDSTPVGSGLNVNYESAAENEGRLVVEAMQKWNICQKQNRRDREDNVDIYG 617
Query: 541 DNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWA 600
DNG DSNKI+PE +K GN E G + TK+SPE+KHHLYISEAELQMH PLWA
Sbjct: 618 DNGNSDSNKIHPEGIKKGNSIYPEVRGAVTNTKISPEEKHHLYISEAELQMHQACFPLWA 677
Query: 601 KPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARV 660
KP+IYFQSMM + + + + ++GEIEIER P RMIEARSKDLVP+FDYLQ+PKF +R
Sbjct: 678 KPEIYFQSMMTEGIDVNDADAMQGEIEIERIPARMIEARSKDLVPLFDYLQTPKFPHSRC 737
Query: 661 PTV 663
+
Sbjct: 738 AEI 740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117404|ref|XP_002317566.1| predicted protein [Populus trichocarpa] gi|222860631|gb|EEE98178.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/654 (69%), Positives = 514/654 (78%), Gaps = 46/654 (7%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
+QMLP+PITSKRS DKFA RPLLV CADG VQDG +N HD NGS
Sbjct: 95 LQMLPKPITSKRSEDKFAYNRPLLVVCADG-------VQDG-------NVSNNHDPVNGS 140
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+V TVV FYSLRSQSYVH+LKFRS +YSVRCSSR+VAI Q++QVHCF+A TL+ EY ILT
Sbjct: 141 TVSTVVRFYSLRSQSYVHVLKFRSAVYSVRCSSRIVAISQSSQVHCFNATTLQREYTILT 200
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NP+VMG P +GGIG YGPLAVGPRWLAYSGSPVVVSN GRV+PQHL S SFSGF SNG
Sbjct: 201 NPMVMGSPGSGGIG--YGPLAVGPRWLAYSGSPVVVSNSGRVSPQHLTPSVSFSGFTSNG 258
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSK LAAGIV LGD+GYK+LS+YCSE LPDS SLQS P KSNGTVNG+
Sbjct: 259 SLVAHYAKESSKQLAAGIVTLGDMGYKRLSRYCSELLPDSHGSLQSGSPSWKSNGTVNGY 318
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
FPDADN+GMV+VRDIVSK IAQFRAHKSPISALCFD SG LLVTASVQGHNIN+FKI+P
Sbjct: 319 FPDADNIGMVVVRDIVSKLAIAQFRAHKSPISALCFDSSGTLLVTASVQGHNINVFKIMP 378
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
G+ G+SS AG S++HLYRLQRG TNAVIQDISFSDDS WIMISSSRGTSHLFAINPLG
Sbjct: 379 GLQGSSS---AGASHIHLYRLQRGFTNAVIQDISFSDDSYWIMISSSRGTSHLFAINPLG 435
Query: 361 GSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNN 420
GS+NFQ +++ T LCASGPP+TLS VSRIRNGNN
Sbjct: 436 GSMNFQSSESGHT--------------------------LCASGPPLTLSAVSRIRNGNN 469
Query: 421 GWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMI 480
GWRGTV+GAAAAATGR LSGAIASSFH CKG+++ Y G+S K K HLLVFSPSG MI
Sbjct: 470 GWRGTVTGAAAAATGRQGYLSGAIASSFHKCKGSNDMYVDGASFKSKYHLLVFSPSGSMI 529
Query: 481 QYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYG 540
QYALRIS G+D GL + Y+S E+D RLVVEA+QKWNICQKQ RR+REDN DIYG
Sbjct: 530 QYALRISAGVDSMAISSGLNATYESAAENDGRLVVEAMQKWNICQKQNRRDREDNADIYG 589
Query: 541 DNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWA 600
+NG DSNKI+PE +K GN E + + K+S E+KH+LYISEAEL MH PR PLWA
Sbjct: 590 ENGNSDSNKIHPEGIKKGNSIYPE-DSAVTNAKISSEEKHYLYISEAELHMHQPRFPLWA 648
Query: 601 KPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPK 654
KP+IYFQSMM + K+ + + L+GEIEIER PTRMIEARSKDLVP+FD+LQ+PK
Sbjct: 649 KPEIYFQSMMTEGIKVDDADALQGEIEIERIPTRMIEARSKDLVPLFDHLQAPK 702
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545163|ref|XP_003541014.1| PREDICTED: uncharacterized protein LOC100791837 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/784 (59%), Positives = 547/784 (69%), Gaps = 20/784 (2%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQM+P PI SKR DK+A PLLV C DG G K QDGL C G + N+HD NG+
Sbjct: 132 MQMVPTPIVSKRPEDKYAGKHPLLVICMDG----GGKTQDGLGATCKGGTLNHHDQVNGN 187
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+PT V FYS+RSQSYVH+LKFRS +YSVRCSSR+VA+ QA Q+HCF A TLE EY +LT
Sbjct: 188 YLPTTVQFYSMRSQSYVHVLKFRSVVYSVRCSSRIVAVSQATQIHCFSATTLEREYTLLT 247
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPIV P G GIG+GPLAVGPRWLAYSGSP + GRV PQHL S SF G +SN
Sbjct: 248 NPIVT--PCFGSGGIGFGPLAVGPRWLAYSGSPDATATSGRVRPQHLTPSASFPGISSNV 305
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSKHLAAGIV LGD+GYKKLS+YCSE PDS +S+Q K NG VNGH
Sbjct: 306 SLVAHYAKESSKHLAAGIVTLGDMGYKKLSRYCSELRPDSSSSIQLVNSSPKGNGIVNGH 365
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
DADN+GMVIVRDIVSKNV++QFRAHKSPISALCFDPSG +LVTASVQGHNIN+FKIIP
Sbjct: 366 STDADNIGMVIVRDIVSKNVVSQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIIP 425
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
G SA DAG SYVHLYRLQRGLTNAVIQDISFS DS WIMISSSRGTSHLFAINP G
Sbjct: 426 G-YERVSASDAGPSYVHLYRLQRGLTNAVIQDISFSADSRWIMISSSRGTSHLFAINPQG 484
Query: 361 GSVNFQPTDANFTTKHGA---MAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G VN D + T K+G M V WP + L++ QSLC +GPP+TLSVVSRIRN
Sbjct: 485 GPVNILSCDNSLTEKNGGLDVMNNQAVCWPHSSALEICKPQSLCTAGPPITLSVVSRIRN 544
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
G+NGWR TV+GAAAAAT R+SSLSGAIASSF N +GNS + G+ K K HLLVFSP+G
Sbjct: 545 GSNGWRSTVTGAAAAATNRMSSLSGAIASSFRNFEGNSTLFVNGNYSKEKCHLLVFSPTG 604
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
MIQYAL+ D + V G+ AY+S P D R+VVE I+KWNI Q+Q+ RE EDNID
Sbjct: 605 SMIQYALQTINSQDSGV-VSGVTPAYESAPATDVRVVVEPIKKWNISQRQSWREGEDNID 663
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIP 597
IYG+N DSNK+Y EEVK N S + V K E +H LYISEAELQMH + P
Sbjct: 664 IYGENVVSDSNKLYSEEVKKDNIISPKMKNVAVKWNSCSEKEHQLYISEAELQMHQAKTP 723
Query: 598 LWAKPQIYFQSMMIKD-FKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFS 656
LW K IYF S+ + M EE GE EI++ PTR+I+ARSKDLVP+FDY+Q+ KF
Sbjct: 724 LWGKTGIYFHSVGKEAILMMDEEAASGGEFEIDKIPTRVIQARSKDLVPIFDYIQTSKFQ 783
Query: 657 QARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLD 716
Q R P VG E+LL Q S ENG +S R S D + +E IE +
Sbjct: 784 QIRTPAVGNVLYEQLLRQSS--FENGRISTRGFLSSPDCIP-----NSEFKSMIEGSEWG 836
Query: 717 CPQMPVDTKGFVNNSVSPKTKTRHEIVNN-SESLRVEAQLKFVNSKIEGLRMENHFEDEG 775
+ TK FVN + + K T EI NN E+L + A FVNS +GL++ENH +++G
Sbjct: 837 DSLLSAKTKAFVNKNNTLKPNTWPEIANNRRENLNMNAHQIFVNSDRKGLKLENHCKEKG 896
Query: 776 DEFD 779
DEFD
Sbjct: 897 DEFD 900
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514980|ref|XP_003526179.1| PREDICTED: uncharacterized protein LOC100778343 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/784 (58%), Positives = 546/784 (69%), Gaps = 16/784 (2%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQM+P PI SK+ DKFA+ RPLLV C DG + G K QDGL CNG + N H NG+
Sbjct: 129 MQMVPTPIVSKKPEDKFADKRPLLVVCTDGLLAGGDKTQDGLGATCNGGTLNRHAQVNGN 188
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+PT V FYS+RS++ VH+LKFRS +YSVRCSSR+V + QA Q+HC A TLE EY +LT
Sbjct: 189 YLPTTVQFYSMRSRTNVHVLKFRSVVYSVRCSSRIVTVSQATQIHCLSATTLEREYTLLT 248
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NPIV +GGIG +GPLAVGPRWLAYSGSP + G V+PQHL S SF GF+SNG
Sbjct: 249 NPIVTHCLGSGGIG--FGPLAVGPRWLAYSGSPDATATSGHVSPQHLTPSASFPGFSSNG 306
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSKHLAAGIV LGD+GYKKL++YCSE DS S+ K NG VNGH
Sbjct: 307 SLVAHYAKESSKHLAAGIVTLGDMGYKKLARYCSELRSDSSGSIHLVNSSPKGNGIVNGH 366
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
DADN+GMVIVRDIVSKNVI+QFRAHKSPISALCFDPSG +L+TASVQGHNIN+FKIIP
Sbjct: 367 STDADNIGMVIVRDIVSKNVISQFRAHKSPISALCFDPSGTILLTASVQGHNINVFKIIP 426
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
G SA DA SYVHLYRLQRGLTNAVIQDISFS DS WIMISSSRGTSHLFAINP G
Sbjct: 427 G-YERVSASDADPSYVHLYRLQRGLTNAVIQDISFSADSRWIMISSSRGTSHLFAINPQG 485
Query: 361 GSVNFQPTDANFTTKHGAMA---KSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G V+ D + T K+G + VRWP + L++ QSLCA+GPP+TLSVVSRIRN
Sbjct: 486 GPVSILSCDNSLTEKNGGLDIINNQAVRWPHSSALEICKPQSLCAAGPPITLSVVSRIRN 545
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
G+NGWR TV+GAAAAAT R+SSLSGAIASSF N K +S Y G+ K K+HLLVFSP+
Sbjct: 546 GSNGWRSTVTGAAAAATNRMSSLSGAIASSFRNFKDSSTLYVNGNYSKEKHHLLVFSPTS 605
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
MIQYAL+ D + V G+ AY+S P D R+VVE I+KWNI + RE ED ID
Sbjct: 606 SMIQYALQTINSQDSGV-VSGVTPAYESAPLTDARVVVEPIKKWNISLAYSWREGEDTID 664
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIP 597
IYG+NG DSNK+Y EEVK N S + V K E +H YISEAELQMH + P
Sbjct: 665 IYGENGVSDSNKLYSEEVKKDNIISPKMKNVTVKWNPCSEKEHQFYISEAELQMHQAKTP 724
Query: 598 LWAKPQIYFQSMMIK-DFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFS 656
LW K IYF S+ + M EE L+GE EIE+ PTR+I+ARSKDLVP+FDY+ +FS
Sbjct: 725 LWGKTGIYFHSVGKEATLMMDEEAALEGEFEIEKIPTRVIQARSKDLVPIFDYI---RFS 781
Query: 657 QARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLD 716
R V NE+LLHQ S E G +S R G D + +G AE GIE
Sbjct: 782 --RRTLVNNKLNEQLLHQSS--FEKGRISPRGILGFPDCINNSGETIAEFKSGIEGNERG 837
Query: 717 CPQMPVDTKGFVNNSVSPKTKTRHEIVNN-SESLRVEAQLKFVNSKIEGLRMENHFEDEG 775
+P +TK FVNN+ + K T EIVNN E+L ++ FVNS +GL++ENH +++G
Sbjct: 838 DSLIPAETKAFVNNNNTLKPNTWPEIVNNRRENLNMDVHQMFVNSDRKGLKLENHCKEKG 897
Query: 776 DEFD 779
DEF+
Sbjct: 898 DEFE 901
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468504|ref|XP_004151961.1| PREDICTED: uncharacterized protein LOC101215158 [Cucumis sativus] gi|449527063|ref|XP_004170532.1| PREDICTED: uncharacterized LOC101215158 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/784 (58%), Positives = 560/784 (71%), Gaps = 26/784 (3%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
MQ+LPR I S RS DKFAE RPL+V A GS + +QD LA++ N T ++ +G+
Sbjct: 145 MQVLPRLIPSMRSGDKFAESRPLIVLSAYGSIAANFNIQDRLASSGNATIPKSQEVVDGN 204
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
+PT V FYSL+SQ+YVH LKFRS +YSV+CS VVAI A Q+HC +A TLE E+ ILT
Sbjct: 205 FMPTFVRFYSLKSQTYVHELKFRSAVYSVKCSPLVVAISLATQIHCINATTLEKEHIILT 264
Query: 121 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG 180
NP+V G G+GYGPLA+GPRWLAYSGSP+++SN GRV PQHL S SFS +SNG
Sbjct: 265 NPVV-SGFPGSGGGMGYGPLALGPRWLAYSGSPILLSNTGRVVPQHLKPSASFSHSSSNG 323
Query: 181 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH 240
S VAHYAKESSKHLAAGIV LGD G KKLS+Y SE LP+S NSLQS G K GT+NGH
Sbjct: 324 SLVAHYAKESSKHLAAGIVTLGDKGIKKLSRYYSELLPESNNSLQSGAQGLKGIGTLNGH 383
Query: 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300
DAD++GM IV+DI+SK VI QF+AHKSPISALCFDPSG +LVTASVQGH+IN+FKI+P
Sbjct: 384 MADADSIGMAIVKDIISKAVITQFKAHKSPISALCFDPSGTILVTASVQGHSINVFKIMP 443
Query: 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360
SS SY HLYRLQRG TNAVIQDISFS DSNWIMISSSRGTSHLFAINP G
Sbjct: 444 SSCSKSSISSTAASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPSG 503
Query: 361 GSVNFQPTDANFTTKHG---AMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRN 417
G VNF A+ ++G A+ VR + GL MP++Q+ C +G P+TLS V+RI +
Sbjct: 504 GQVNF--PSADIIARNGGPVVPARQTVR-RVDSGLHMPSKQNQCTTGSPLTLSAVTRIHH 560
Query: 418 GNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG 477
G+NGWRGTVS AAAAATG++ +SGAIAS+FH CKGN+ GSS +++ H+LVFSPSG
Sbjct: 561 GSNGWRGTVSSAAAAATGKMGIVSGAIASAFHECKGNTVHVDNGSS-EVRYHILVFSPSG 619
Query: 478 CMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNID 537
MIQYALR+ GLD T+ +P +A + V E D RLVVEAIQKWNI QKQ RR ++++ID
Sbjct: 620 SMIQYALRV--GLDSTVVLPRSSTALELVSELDSRLVVEAIQKWNISQKQNRRSQDNSID 677
Query: 538 IYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIP 597
IYGDNG + NK Y EE+ +GN EA G I KTK E+++HLYISEAELQMH R P
Sbjct: 678 IYGDNGGFNCNKNYCEEM-NGN-PVLEAGGNIFKTKACREEQYHLYISEAELQMHAARTP 735
Query: 598 LWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQ 657
LW KP+IYFQ M K+ E + GE++IER PTRMIEARSKDLVPVFDYLQS K SQ
Sbjct: 736 LWTKPEIYFQVMARDGVKIDEIDH-PGELDIERIPTRMIEARSKDLVPVFDYLQSSKISQ 794
Query: 658 ARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDC 717
R + NS++ LL Q+SG ENG S RS++ DSV NG E T
Sbjct: 795 PRY--LNSNSDQLLLQQKSGQFENGRQSWRSAANPHDSVVGNGR---------EVTGRHG 843
Query: 718 PQMPVDTKGFVNNSVSPKTKTRHEIVNN-SESLRVEAQLKFVNSKIE-GLRMENHFEDEG 775
+ +TKG VN P+++T+ VN+ +ES+ +E+Q K VN+ + GLR+ENHFED G
Sbjct: 844 YKRVTETKGIVNEPECPRSQTQFSNVNSCTESISMESQPKSVNNHHKSGLRVENHFEDLG 903
Query: 776 DEFD 779
DEF+
Sbjct: 904 DEFE 907
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 779 | ||||||
| TAIR|locus:2157523 | 763 | G18F "AT5G54730" [Arabidopsis | 0.344 | 0.351 | 0.508 | 4e-110 | |
| TAIR|locus:2020853 | 959 | ATG18G "AT1G03380" [Arabidopsi | 0.811 | 0.659 | 0.386 | 1.4e-105 | |
| TAIR|locus:2199512 | 927 | ATG18H "AT1G54710" [Arabidopsi | 0.657 | 0.552 | 0.408 | 2.7e-93 | |
| ZFIN|ZDB-GENE-040426-1257 | 910 | bcas3 "breast carcinoma amplif | 0.269 | 0.230 | 0.334 | 4.1e-33 | |
| UNIPROTKB|F1P1V9 | 803 | BCAS3 "Uncharacterized protein | 0.261 | 0.254 | 0.341 | 2.5e-31 | |
| UNIPROTKB|F1N6R8 | 724 | BCAS3 "Uncharacterized protein | 0.261 | 0.281 | 0.329 | 6.9e-30 | |
| RGD|1560788 | 803 | Bcas3 "breast carcinoma amplif | 0.261 | 0.254 | 0.337 | 1e-29 | |
| UNIPROTKB|F1LSC9 | 824 | Bcas3 "Protein Bcas3" [Rattus | 0.261 | 0.247 | 0.337 | 1.2e-29 | |
| UNIPROTKB|F1S209 | 820 | BCAS3 "Uncharacterized protein | 0.261 | 0.248 | 0.329 | 1.3e-29 | |
| UNIPROTKB|Q9H6U6 | 928 | BCAS3 "Breast carcinoma-amplif | 0.261 | 0.219 | 0.337 | 1.7e-29 |
| TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 4.0e-110, Sum P(3) = 4.0e-110
Identities = 146/287 (50%), Positives = 193/287 (67%)
Query: 76 YVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAILTNP--IVMGHPSAG 131
YV+ LK +S +++++ + + ++ C + V AA ++ + A L IV G
Sbjct: 164 YVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSIVCG 223
Query: 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 191
+G+GYGPLAVGPRW+AYSGS + S+ + S S S+ S VA +A++SS
Sbjct: 224 SLGVGYGPLAVGPRWIAYSGSRIATSSSA------IFTSEIVSLSTSSPS-VAQFARDSS 276
Query: 192 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVI 251
K LA+GI NLGD GY+ L++YCSE LP+ IPG K G N DA+++GMVI
Sbjct: 277 KQLASGIANLGDKGYRSLTKYCSEVLPNPY------IPGLKGIGVGNEKVADAESIGMVI 330
Query: 252 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 311
V+DI +K+VI QF+AHKSPISALCFD SG+LLVTAS+QGHNIN+F+I+P I TS A
Sbjct: 331 VKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTI-STSRAVKT 389
Query: 312 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358
T++ HL+RLQRG TNAVIQDI FS DSN I++ SSRGTSHLF INP
Sbjct: 390 -TTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINP 435
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| TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 261/676 (38%), Positives = 377/676 (55%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV-----QDGLATACNGTSANYHD 55
+QM P P S + F PLL+ A G + GT + Q+G + A +G+S +
Sbjct: 111 LQMQPLPARSG-DHEGFWNSHPLLLVVA-GDETNGTGLGHSFSQNG-SLARDGSSDS--K 165
Query: 56 LGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIE 115
G+ + PT V FYSLRS SYV++L+FRS + +RCSSRVVA+ A Q++C DA TLE +
Sbjct: 166 AGDAINYPTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENK 225
Query: 116 YAILTNPIVMG-HPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS 174
+++LT P+ + +GYGP+AVGPRWLAY+ + GR++PQ S S S
Sbjct: 226 FSVLTYPVPQPVRQGTTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLS 285
Query: 175 GFASNG--SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGK 232
+S+G S +A YA ESSK LA G++NLGD+GYK LS+YC + LPD S S K
Sbjct: 286 PSSSSGGSSFMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWK 345
Query: 233 SNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN 292
G V+G DA+N GMV V+D+VS +++QF+AH SPISALCFDPSG LLVTASV G+N
Sbjct: 346 VGG-VSGS--DAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNN 402
Query: 293 INIFKIIPGILGTSS---ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349
IN+F+I+P + + + +S+VHL++L RG+T+A++QDI FS S W+ I SS+G
Sbjct: 403 INVFQIMPSRSHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKG 462
Query: 350 TSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPP--V 407
T H+F +N G FQP + T+ + S + W L NQQSL PP V
Sbjct: 463 TCHIFVLNSSGSDAAFQPCEGEEPTR---LPASSLPWWFTQSLSS-NQQSL---SPPTAV 515
Query: 408 TLSVVSRIRNGNNGWXXXXXXXXXXXXXXXXXLSGAIASSFHNCKGNSETYAAGSSLKIK 467
LSVVSRI+ + GW SGA+A+ FH K + S
Sbjct: 516 ALSVVSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFH--KSVTHDLQLNSRTNAL 573
Query: 468 NHLLVFSPSGCMIQYALRISTGLDVTM-GVPGLGSAYDSVPEDDPRLVVEAIQKWNICQK 526
H+LV++PSG ++Q+ L S + G+ +++ V EDD R+ VE IQ W++C++
Sbjct: 574 EHILVYTPSGHVVQHELLPSVCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRR 633
Query: 527 QARREREDNI--DIYGDNGTLD--SNKIYPEEVK----DGNFASTEANGVIEKTKVSPED 578
E E+ + I L+ SN + E D N +E + ++ P +
Sbjct: 634 SDWLETEERLPKSITEKQYDLETVSNHLTSHEDACLSLDMNSHFSE-DKYLKSCSEKPPE 692
Query: 579 KHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEA 638
+ H Y+S E+++ +P+W +I F M D + + GE EIE+ P +E
Sbjct: 693 RSHCYLSNFEVKVTSGMLPVWQNSKISFHVM---DSPR-DSSSTGGEFEIEKVPAHELEI 748
Query: 639 RSKDLVPVFDYLQSPK 654
+ K L+PVFD+ S K
Sbjct: 749 KQKKLLPVFDHFHSTK 764
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| TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 222/544 (40%), Positives = 317/544 (58%)
Query: 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 60
+QM P P + F P+L+ AD ++ G + T+ +G+ N ++
Sbjct: 120 LQMQPLPAKCD-GVEGFRSSHPILLAVADEAKGSGP-----IVTSRDGSVRNGYEDPLAL 173
Query: 61 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120
S PTVV FYSLRS +YVH+L+FRS +Y VRCS R+VA+ +Q++CFDA TLE ++++L+
Sbjct: 174 S-PTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLS 232
Query: 121 NPIV-MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSR-SFSGFAS 178
P+ +G+ G+ +GYGP+AVG RWLAY+ + + S+ GR++PQ++ S S +
Sbjct: 233 YPVPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPN 292
Query: 179 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 238
NG+ VA YA ESSKHLAAG++NLGD GYK +S+YC + D S+ PG K G V
Sbjct: 293 NGNLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKV-GRVG 351
Query: 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298
H ++D VG VIV+D S+ +IAQFRAH SPISALCFDPSG LLVTAS+ G+NIN+F+I
Sbjct: 352 SHSAESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRI 411
Query: 299 IPGILGT---SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355
+P + + D +S+V LY+L RG+T+AVIQDI FS S WI I SS+ T H++
Sbjct: 412 MPTPTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYV 471
Query: 356 INPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPP---VTLSVV 412
++P GG + ++ F A S W P+ + S PP VTLSVV
Sbjct: 472 LSPFGGENVLEIRNSQFDGPTLAPTLSLPWW------SSPSFMTTHFSYPPPASVTLSVV 525
Query: 413 SRIRNGNNGWXXXXXXXXXXXXXXXXXLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLV 472
SRI+ N SG +A+ FH S + SS ++LLV
Sbjct: 526 SRIKCNN------FFHAASSVVGKPTFPSGCLAAVFHQ----SVPQESQSSSPALDYLLV 575
Query: 473 FSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARRER 532
++PSG ++QY L S G D G+ E++ R+ VE +Q W++C++ ER
Sbjct: 576 YTPSGHVVQYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPER 635
Query: 533 EDNI 536
E+NI
Sbjct: 636 EENI 639
|
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| ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 4.1e-33, Sum P(4) = 4.1e-33
Identities = 78/233 (33%), Positives = 118/233 (50%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 193
G + P+A+G RWLAY+ + ++ R + QSR N ++K
Sbjct: 223 GPNFNPIALGSRWLAYAENKLI-----RCH-----QSRG-GACGDNAQSYTATVISAAKT 271
Query: 194 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSN-GTVNGHFPDADNVG---M 249
L G+ +G + +L+ +PD + + S G V D VG +
Sbjct: 272 LKTGLTMVGKV-VTQLAGTLPSGVPDEEGTAHSGTRRSPHQPGVVT--IIDTHTVGEGQV 328
Query: 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC 309
++ D + +IA F AH PIS + F+PSG+LLVTA GH+ ++F+I+ T
Sbjct: 329 LVSEDSDGEGLIAHFPAHDKPISCMAFNPSGMLLVTADTLGHDFHVFQIL-----THPWA 383
Query: 310 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362
+ ++ HLY L RG T A +QDI FS D W++IS+ RGTSH+F INP GG+
Sbjct: 384 SSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVISTLRGTSHVFPINPYGGA 436
|
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| UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 2.5e-31, Sum P(5) = 2.5e-31
Identities = 81/237 (34%), Positives = 121/237 (51%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFP--DADNV 247
+K + G+ +G K ++Q LP + A + + V G D + V
Sbjct: 273 AKTIKTGLTMVG----KVVTQLTGT-LPSGATEEEILAHSNVRRSPLVPGVITIIDTETV 327
Query: 248 --GMVIV-RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G V+V D S ++A F AH+ PI + F+PSG+LLVT GH+ ++F+I+
Sbjct: 328 AEGQVLVSEDSDSAGIVAHFPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL----- 382
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
T + ++ HLY L RG T A +QDISFS D W+++S+ RGTSH+F INP GG
Sbjct: 383 THPWSSSQSAVHHLYTLHRGETEAKVQDISFSHDCRWVVVSTLRGTSHVFPINPYGG 439
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| UNIPROTKB|F1N6R8 BCAS3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 6.9e-30, Sum P(4) = 6.9e-30
Identities = 78/237 (32%), Positives = 119/237 (50%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 127 GPNMNPVALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 172
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI-PGGKSNGTVNGHFP--DADNV 247
+K L G+ +G K ++Q LP AI + + V G D + V
Sbjct: 173 AKTLKTGLTMVG----KVVTQLTGT-LPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETV 227
Query: 248 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G +++ D S ++A F AH+ P+ + F+ SG+LLVT GH+ ++F+I+
Sbjct: 228 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL----- 282
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
T + ++ HLY L RG T A +QDI FS D W+++S+ RGTSH+F INP GG
Sbjct: 283 THPWSSSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 339
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| RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.0e-29, Sum P(4) = 1.0e-29
Identities = 80/237 (33%), Positives = 121/237 (51%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP-GGKSNGTVNGHFP--DADNV 247
+K L +G+ +G K ++Q LP AI + + V G D + V
Sbjct: 273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTDDDIAIHCNSRRSPLVPGIITVIDTETV 327
Query: 248 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G +++ D S ++A F AH+ P+ + F+ SG+LLVT GH+ ++F+I+
Sbjct: 328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
+SS C + HLY L RG T A +QDI FS D W+++S+ RGTSH+F INP GG
Sbjct: 387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439
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| UNIPROTKB|F1LSC9 Bcas3 "Protein Bcas3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 80/237 (33%), Positives = 121/237 (51%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP-GGKSNGTVNGHFP--DADNV 247
+K L +G+ +G K ++Q LP AI + + V G D + V
Sbjct: 273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTDDDIAIHCNSRRSPLVPGIITVIDTETV 327
Query: 248 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G +++ D S ++A F AH+ P+ + F+ SG+LLVT GH+ ++F+I+
Sbjct: 328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
+SS C + HLY L RG T A +QDI FS D W+++S+ RGTSH+F INP GG
Sbjct: 387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439
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| UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 78/237 (32%), Positives = 119/237 (50%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 223 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 268
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI-PGGKSNGTVNGHFP--DADNV 247
+K L G+ +G K ++Q LP AI + + V G D + V
Sbjct: 269 AKTLKTGLTMVG----KVVTQLTGT-LPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETV 323
Query: 248 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G +++ D S ++A F AH+ P+ + F+ SG+LLVT GH+ ++F+I+
Sbjct: 324 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL----- 378
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
T + ++ HLY L RG T A +QDI FS D W+++S+ RGTSH+F INP GG
Sbjct: 379 THPWSSSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 435
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| UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 80/237 (33%), Positives = 121/237 (51%)
Query: 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 190
G P+A+G RWLAY+ + ++ R + QSR G A G + Y +
Sbjct: 227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272
Query: 191 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI-PGGKSNGTVNGHFP--DADNV 247
+K L +G+ +G K ++Q LP AI + + V G D + V
Sbjct: 273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETV 327
Query: 248 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 304
G +++ D S ++A F AH+ P+ + F+ SG+LLVT GH+ ++F+I+
Sbjct: 328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386
Query: 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361
+SS C + HLY L RG T A +QDI FS D W+++S+ RGTSH+F INP GG
Sbjct: 387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00027420001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (881 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 779 | |||
| pfam12490 | 245 | pfam12490, BCAS3, Breast carcinoma amplified seque | 3e-89 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 |
| >gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3 | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 3e-89
Identities = 114/246 (46%), Positives = 152/246 (61%), Gaps = 5/246 (2%)
Query: 404 GPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSS 463
PPVTLSVVSRI+NGN+GW GTV+GAA++ATG+ +SGA+AS FHNC G + A G
Sbjct: 1 PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60
Query: 464 LKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDP-RLVVEAIQKWN 522
K+HLLVFSPSG +IQY LR S G D +P G +S ++ RL VE +Q+W+
Sbjct: 61 SNSKDHLLVFSPSGHLIQYLLRPSVGGDS-GEIPRNGVPSESQIDETELRLTVEPVQQWD 119
Query: 523 ICQKQARREREDNIDIYGDNGTLDS-NKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHH 581
+C++ ERE+N+ G+N LD+ K+ PE + GN ++ + K S E+K H
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHPISDSAVGKESTSSEEKDH 179
Query: 582 LYISEAELQMH-PPRIPLWAKPQIYFQSM-MIKDFKMGEENFLKGEIEIERFPTRMIEAR 639
LY+S AE+Q H P PLW P+ F M ++ L GEIEIE+ PTR +E R
Sbjct: 180 LYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLPTREVEIR 239
Query: 640 SKDLVP 645
KDLVP
Sbjct: 240 RKDLVP 245
|
This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 31/135 (22%)
Query: 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKII---- 299
+ + D+ + + H S +S++ F P G +L ++S ++ K +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132
Query: 300 -------------PGILGTSSACDAGTSYVHLYRLQRGLTNAV-------IQDISFSDDS 339
G SS+ D + L+ L+ G A + ++FS D
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQD---GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189
Query: 340 NWIMISSSRGTSHLF 354
++ SSS GT L+
Sbjct: 190 EKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 257 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH 291
S ++ + H P++++ F P G L + S G
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGT 35
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| PF12490 | 251 | BCAS3: Breast carcinoma amplified sequence 3 ; Int | 100.0 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.84 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.8 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.8 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.8 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.79 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.75 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.75 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.74 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.74 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.71 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.71 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.67 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.66 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.65 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.64 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.64 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.63 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.63 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PTZ00420 | 568 | coronin; Provisional | 99.58 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.56 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.56 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.56 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.55 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.55 | |
| PTZ00421 | 493 | coronin; Provisional | 99.54 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.54 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.54 | |
| PTZ00421 | 493 | coronin; Provisional | 99.54 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.52 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.51 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.51 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.51 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.5 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.48 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.48 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.48 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.48 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.47 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.47 | |
| PTZ00420 | 568 | coronin; Provisional | 99.47 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.46 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.45 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.44 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.43 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.43 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.42 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.41 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.4 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.39 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.39 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.39 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.39 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.37 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.37 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.37 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.34 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.34 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.34 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.33 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.33 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.32 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.31 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.31 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.31 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.31 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.3 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.3 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.3 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.3 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.29 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.28 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.28 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.27 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.26 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.26 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.24 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.21 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.19 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.19 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.18 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.18 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.18 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.17 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.17 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.16 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.14 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.12 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.08 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.07 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.07 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.06 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.04 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.02 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.0 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.99 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.98 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.97 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.92 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 98.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.84 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 98.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 98.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 98.82 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.79 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 98.79 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.78 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.78 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.78 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.75 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.75 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.74 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 98.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.72 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.72 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.72 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.71 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.71 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.7 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.67 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.65 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.62 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.62 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.61 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.59 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.53 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.51 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.5 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.47 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.47 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.44 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 98.44 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.4 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.37 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.37 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.36 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.35 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.35 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.3 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.29 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.27 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.25 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.24 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.23 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.21 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.19 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.18 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.18 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.1 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.08 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.05 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.04 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.03 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.02 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.0 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.96 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.95 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.93 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.9 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.89 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.88 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.88 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.87 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.86 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 97.84 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 97.8 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.72 | |
| KOG4415 | 247 | consensus Uncharacterized conserved protein [Funct | 97.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 97.64 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 97.64 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.64 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.63 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.6 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.5 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.44 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.42 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.42 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.4 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.36 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.31 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.31 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 97.31 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.29 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.25 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.25 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.23 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.17 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.09 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.02 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.93 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.86 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.8 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.74 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.66 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.61 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 96.42 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 96.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.33 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.27 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.14 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.11 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.02 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 95.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.82 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.68 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 95.47 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.46 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.43 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 95.42 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 95.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.35 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.23 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.06 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.03 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.91 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.86 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 94.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 94.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 94.32 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.14 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.12 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.91 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 93.88 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 93.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 93.76 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 93.6 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.45 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 93.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 93.1 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 93.03 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.91 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 92.89 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 92.76 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 92.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 92.55 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 92.13 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 91.75 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 91.11 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.97 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.18 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 90.14 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 90.09 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.71 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 89.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 88.9 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 87.87 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 87.68 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 87.26 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 87.06 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 86.4 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 86.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 86.14 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 85.79 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 85.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 85.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 85.29 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 85.15 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.69 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 84.67 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 84.55 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 84.26 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 84.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 83.92 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 83.79 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 82.29 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.49 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 81.33 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 80.97 |
| >PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=492.24 Aligned_cols=241 Identities=47% Similarity=0.725 Sum_probs=213.2
Q ss_pred CCCeeeeeeEEeecCC-CCCCCcccCccccccC-CcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEccCccEEE
Q 004015 404 GPPVTLSVVSRIRNGN-NGWRGTVSGAAAAATG-RVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQ 481 (779)
Q Consensus 404 ~pp~~ls~v~ri~~~~-~~~~~~v~~~a~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~p~G~liq 481 (779)
|||++|+||+||||++ +||.|+|+++|++++| |.+.++|++|+.||+|.+.+..+..+...++++|||||+|+|+|||
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5799999999999999 8999999999999999 8899999999999999777766666776789999999999999999
Q ss_pred EeeeeccCCCccCCcCCCCCCCCCC-CCCCceEEEeeeccccccccCccccccc-cccccCCCCCcCC-CcccccccccC
Q 004015 482 YALRISTGLDVTMGVPGLGSAYDSV-PEDDPRLVVEAIQKWNICQKQARRERED-NIDIYGDNGTLDS-NKIYPEEVKDG 558 (779)
Q Consensus 482 y~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Vep~~~Wdvcr~~~~~e~e~-~~~~~~~~~~~~~-~~~~~~~~~~~ 558 (779)
|+|+|+.+.+++.+.++.++++++. +|+++||+|||+|||||||+++|+|+++ +..+++.++..+. ++|+++..+++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRKG 160 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhccccccccc
Confidence 9999999999988888899999888 7799999999999999999999999999 7777888765444 56777777776
Q ss_pred C-cccCCCccccccccCCcccccceeeeeeeeeecCC-CcccccCCeeEEEEcccCcc-ccccccccc--ceEEEeeccc
Q 004015 559 N-FASTEANGVIEKTKVSPEDKHHLYISEAELQMHPP-RIPLWAKPQIYFQSMMIKDF-KMGEENFLK--GEIEIERFPT 633 (779)
Q Consensus 559 ~-~~~~~~~~~~~~~~~~~~e~~~~ylSnaEv~~h~~-~~piW~~~~~~F~~m~~~~~-~~~~~~~~~--~~~eie~~~~ 633 (779)
+ +++.+...+ .+.+++++|++++||||||||||++ ||||||||||+||+|.+++. ++...+..+ ||||||++|+
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~EIE~~~~ 239 (251)
T PF12490_consen 161 NSVNPSNDSYV-SKESDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIEIEKIPT 239 (251)
T ss_pred CCccccccccc-cccCCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCceeeccccc
Confidence 5 666654444 6778889999999999999999999 69999999999999998774 445556667 9999999999
Q ss_pred cccccccCCccc
Q 004015 634 RMIEARSKDLVP 645 (779)
Q Consensus 634 ~~~~~~~~~l~p 645 (779)
|+||+|+|||||
T Consensus 240 ~~ve~r~k~l~p 251 (251)
T PF12490_consen 240 REVEIRRKDLLP 251 (251)
T ss_pred cceeeeccccCC
Confidence 999999999998
|
The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. |
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=406.10 Aligned_cols=553 Identities=27% Similarity=0.295 Sum_probs=378.2
Q ss_pred CCCCCCCCCCCcccCccCCCCcEEEEecCCCCcCCccccCCCcccccCCCCCcCCCCC-CCcCCCEEEEEECCCCcEEEE
Q 004015 1 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGN-GSSVPTVVHFYSLRSQSYVHM 79 (779)
Q Consensus 1 ~~~lp~p~~~~~~~d~F~~~rPLLav~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~tVrIWDL~Tge~V~t 79 (779)
|||+|+|+.+..- +.|+.++|++|+|...++ +- .+++ ..+|. ....+....++|+++..++|.
T Consensus 90 ~sm~~~pl~sg~~-~gf~ss~avpavv~~t~S-~p-~I~~-------------S~~Gse~d~t~an~~v~dl~S~~yah~ 153 (788)
T KOG2109|consen 90 SSMDKSPLSSGPD-SGFESSDAVPAVVRTTTS-PP-TIPP-------------SQTGSEQDSTQANEMVVDLMSLDYAHA 153 (788)
T ss_pred cccCCCCccCCCC-CccccCCceeeecccccC-CC-cCCC-------------CCCcceecccccccceeccccccchhc
Confidence 6899999999764 569999999999973221 11 1111 01111 112345677999999999999
Q ss_pred EeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCceeEeeCCCceecCC
Q 004015 80 LKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSND 159 (779)
Q Consensus 80 Lkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~s 159 (779)
++|+ +|+|||+.|++..+.+.+++.+... .+++|+|+++++||+||+.........
T Consensus 154 l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l~-----l~VGYGplaVg~rWaaya~~~a~~vss 209 (788)
T KOG2109|consen 154 LPFR-------------------QIHCFDAPTLEIDSMNTINTKPRLL-----LSVGYGPLAVGRRWAAYAQTLANQVSS 209 (788)
T ss_pred cccc-------------------ccccccCcccCCchhhccccccccc-----eeeccccccceeeeeeeccCcchhhhh
Confidence 9997 8999999999999999887765432 358999999999999999765432211
Q ss_pred CccCCcccccccccccc--cCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCcc
Q 004015 160 GRVNPQHLMQSRSFSGF--ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV 237 (779)
Q Consensus 160 grvspq~ls~s~~~s~~--~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v 237 (779)
+.+.+..++++. ...+..++.||++.+|++|.||.++||.+|+.+++||..+.+++.+.-.......++ |-+
T Consensus 210 -----~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~v-Grv 283 (788)
T KOG2109|consen 210 -----HLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVLV-GRV 283 (788)
T ss_pred -----ccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCceec-ccc
Confidence 111222333433 235667899999999999999999999999999999999877764432221221111 111
Q ss_pred CCcccccCC-CCe--EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 238 NGHFPDADN-VGM--VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 238 ~g~~~s~~~-dG~--V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.. .++.. -|+ +.+-|+.+...+.+|++|+.+|++|+|+++|.+|++++..|+.|++|++++....... +.
T Consensus 284 g~--vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~-~~---- 356 (788)
T KOG2109|consen 284 GP--VSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNV-SD---- 356 (788)
T ss_pred cc--ccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccc-cc----
Confidence 11 12222 344 8889999999999999999999999999999999999999999999999875221100 00
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCCCCCC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQM 394 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~ 394 (779)
..+.--+|+++.+.|++|||+-+.+|++.+|.+|+- +.+. .+.-.+|+-.+.+..
T Consensus 357 -qs~~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------P~ls-------------~t~~lp~~A~~Sl~~ 411 (788)
T KOG2109|consen 357 -QSLVVSPRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------PALS-------------LTCQLPAYADTSLDL 411 (788)
T ss_pred -cccccchhcchHHHHHHHhhhhhcceEeecccCCCC-----------cccc-------------cccccchhhchhhhc
Confidence 111111589999999999999999999999966654 1111 111223333332211
Q ss_pred CCCCccccCCCCeeeeeeEEeecCCCCCCCcccCccccccCCcCCCCCceeeeeeccCCCCcccccCCcccccccEEEEc
Q 004015 395 PNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFS 474 (779)
Q Consensus 395 ~~~~~l~~~~pp~~ls~v~ri~~~~~~~~~~v~~~a~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~ 474 (779)
.-++. .++-...|...++++--+.-..++| .++...++++.+..||-...-. . ......+..|+|+.
T Consensus 412 -gl~s~-g~~aa~gla~~sag~~a~s~~asSv-------~s~s~~pd~ks~gv~~gsv~k~---~-q~~~~~l~~llv~~ 478 (788)
T KOG2109|consen 412 -GLQSS-GGLAAEGLATSSAGYTAHSYTASSV-------FSRSVKPDSKSVGVGSGSVTKA---N-QGVITVLNLLLVGE 478 (788)
T ss_pred -ccccc-Ccccceeeeecccccccccccccee-------eccccccchhhccceeeecccc---C-ccchhhhhheeeec
Confidence 11111 1112344666666665432222222 3344444445555555441110 0 12245799999999
Q ss_pred cCc-cEEEEeeeeccCCCccCC-cCCCCCCCCCCCCCC-ceEEEeeeccccccccCccccccccccccCCCCCcCCCccc
Q 004015 475 PSG-CMIQYALRISTGLDVTMG-VPGLGSAYDSVPEDD-PRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIY 551 (779)
Q Consensus 475 p~G-~liqy~L~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~Vep~~~Wdvcr~~~~~e~e~~~~~~~~~~~~~~~~~~ 551 (779)
|+| +|+||.|.++-+....+. ....+.-.+...+++ .+|.|+|++.|++|++..|+|++++ |.. .-|..
T Consensus 479 psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r----G~T----saKv~ 550 (788)
T KOG2109|consen 479 PSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNR----GST----SAKVV 550 (788)
T ss_pred CCCCceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccC----CCc----cceee
Confidence 999 999999999988777663 334455556667888 9999999999999999999999875 221 22555
Q ss_pred ccccccCCcccCCCccccccccCCcccccceeeeeeeeeecCCCcccccCCeeEEEEcccCccccccccc--ccceEEEe
Q 004015 552 PEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENF--LKGEIEIE 629 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ylSnaEv~~h~~~~piW~~~~~~F~~m~~~~~~~~~~~~--~~~~~eie 629 (779)
...++++..-.. ...+...+.-+++|.|+-++|++||.. +|||+|.+ .||.|...+.+.+.++. .++|.||+
T Consensus 551 ~~afs~dsrw~A----~~t~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~~~~~s~ggg~e~ei~ 624 (788)
T KOG2109|consen 551 STAFSEDSRWLA----ITTNHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDADVTASIGGGKEREIA 624 (788)
T ss_pred eeEeecchhhhh----hhhcCCceeeeeeccccccccceecCC-chhccchh-hhccccCCCccccccccCCCCccceec
Confidence 555554331111 112334446789999999999999999 99999999 99999987765554443 44599999
Q ss_pred eccccccccccCCcccccccccCccccccc
Q 004015 630 RFPTRMIEARSKDLVPVFDYLQSPKFSQAR 659 (779)
Q Consensus 630 ~~~~~~~~~~~~~l~pv~~~~~~~~~~~~~ 659 (779)
++-++.+|.|+||||||++ .+|+|-+-.|
T Consensus 625 ~~~~~t~e~r~~dllPvy~-~tS~rsr~~~ 653 (788)
T KOG2109|consen 625 DSCSYTKEHRIADLLPVYA-KTSGRSRVGP 653 (788)
T ss_pred ccccccccccccccCCccc-ccCccccccC
Confidence 9999999999999999999 6776655433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=258.24 Aligned_cols=179 Identities=30% Similarity=0.540 Sum_probs=159.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCcEEEEEecC-CcccCCCCCCCcccccccee
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN-PIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~-p~~~~~p~s~~~~~~~~piA 141 (779)
|+.+++++++.+..|+.+.|+++|.+|++|++.|+|++++.|||||+.+++.++++.+. +++.+ .+|
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~g------------l~A 134 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKG------------LCA 134 (391)
T ss_pred CceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccc------------eEe
Confidence 48899999999999999999999999999999999999999999999999999999886 44332 234
Q ss_pred ecC----ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 142 VGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 142 lgp----RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++ .+|||++
T Consensus 135 lS~n~~n~ylAyp~------------------------------------------------------------------ 148 (391)
T KOG2110|consen 135 LSPNNANCYLAYPG------------------------------------------------------------------ 148 (391)
T ss_pred eccCCCCceEEecC------------------------------------------------------------------
Confidence 433 2555541
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
....|.|.|||+.+-+++..+.+|.++|.||+||++|++|||||+.||+||||.
T Consensus 149 --------------------------s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~ 202 (391)
T KOG2110|consen 149 --------------------------STTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS 202 (391)
T ss_pred --------------------------CCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence 012478999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..+ +.+|.|+||.....|++++||||+++|+++|.-+|||||.|...
T Consensus 203 v~~G--------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 203 VPEG--------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cCCc--------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9876 78999999998888999999999999999999999999999764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=227.02 Aligned_cols=186 Identities=27% Similarity=0.388 Sum_probs=157.1
Q ss_pred CCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccccc
Q 004015 59 GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 59 ~~~~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|+.|-|||-....++.++.|.++|.+|++.+..|+|.++++|+||... +.+.++.+.|..+|.|.+. +
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~-------~ 142 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS-------L 142 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEe-------e
Confidence 5778999999999999999999999999999999999999999999999998 7899999999877654320 0
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.|. .+...|
T Consensus 143 ~~~-~~k~~L---------------------------------------------------------------------- 151 (346)
T KOG2111|consen 143 CPT-SNKSLL---------------------------------------------------------------------- 151 (346)
T ss_pred cCC-CCceEE----------------------------------------------------------------------
Confidence 000 000112
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
++|+ ...|.|+|-|+...+. -..++||.+.|.||+.+-+|++|||||..||.|||
T Consensus 152 ---------afPg--------------~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 152 ---------AFPG--------------FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred ---------EcCC--------------CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 2222 2347899999887655 46789999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
||..++ ..+++++||...|.|++|+||||+.|||++|+.||+|||.+...
T Consensus 209 Fdt~~g--------------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 209 FDTEDG--------------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEcCCC--------------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999876 68899999999999999999999999999999999999999764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=185.78 Aligned_cols=261 Identities=19% Similarity=0.255 Sum_probs=179.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..|||||-+.||.|..+|++ .+.|..+.+. ++.||++.-..|++||+++.. .+.++..+..
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-------------- 84 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-------------- 84 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC--------------
Confidence 48999999999999999999 6899999995 788999988999999999876 4677766521
Q ss_pred cceee----cCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeeccccc-chh----ceeeecCCccc
Q 004015 138 GPLAV----GPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK-HLA----AGIVNLGDLGY 206 (779)
Q Consensus 138 ~piAl----gpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK-~La----~Gl~~lGd~~~ 206 (779)
|.+++ ..||+..++.+ ..+|+.-..++|..-... +.|..+....-+ +|. .|.+.++|.+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---------CCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 22333 35999988775 456653223333221110 111111111000 111 24445555543
Q ss_pred cccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEeccCCCCeEEEEEcCCC
Q 004015 207 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 207 ~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt~~IsaLaFSPdG 280 (779)
.. +...+.|+...++.+..-.+ .| .-++.+...|...+|++-+. .++..|++|.+-|....||||+
T Consensus 156 ~~---c~~~liPe~~~~i~sl~v~~--dg---sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 156 NS---CTHELIPEDDTSIQSLTVMP--DG---SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred Cc---cccccCCCCCcceeeEEEcC--CC---cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 22 22356777766665432111 11 12455677899999998764 4778899999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++|||+|.|.+ ++||++... ...-..+ .|+ ...+++++||.||+||++++.|+++|+|++....
T Consensus 228 k~lat~ssdkt-v~iwn~~~~-------------~kle~~l-~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 228 KYLATCSSDKT-VKIWNTDDF-------------FKLELVL-TGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cEEEeecCCce-EEEEecCCc-------------eeeEEEe-ecC-CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 99999999987 899998753 1111222 222 2359999999999999999999999999999887
Q ss_pred CceeeccCCC
Q 004015 361 GSVNFQPTDA 370 (779)
Q Consensus 361 g~~~~~~H~~ 370 (779)
......+|..
T Consensus 292 ~v~qy~gh~K 301 (311)
T KOG0315|consen 292 EVRQYQGHHK 301 (311)
T ss_pred eeeecCCccc
Confidence 7777788843
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-20 Score=194.67 Aligned_cols=254 Identities=16% Similarity=0.251 Sum_probs=173.8
Q ss_pred CCEEEEEECCCCcEEE-EEe-CCCCEEEEEEc-------CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVH-MLK-FRSPIYSVRCS-------SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~-tLk-f~s~V~sV~~s-------~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~ 132 (779)
.++|+|||.++|+++- .|+ ++-.|.+++|. .++||. +-|+.|+|||+.-+++++++.+|.++..|
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC----- 252 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC----- 252 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEE-----
Confidence 4789999999988764 454 36789999993 345665 67999999999999999999999765443
Q ss_pred ccccccceeecC-ceeEeeCCC--ceecC--CCccCCcccccccccccccCCCcceeeeecccccchhceeee-cC----
Q 004015 133 IGIGYGPLAVGP-RWLAYSGSP--VVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN-LG---- 202 (779)
Q Consensus 133 ~~~~~~piAlgp-RwLAyas~~--~i~~~--sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~-lG---- 202 (779)
+-.|. .||+.++.+ +.+|. .|.+ +..|. ..+..|.+.|....-.|-.|... .|
T Consensus 253 -------vrwGG~gliySgS~DrtIkvw~a~dG~~-~r~lk---------GHahwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 253 -------VRWGGEGLIYSGSQDRTIKVWRALDGKL-CRELK---------GHAHWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred -------EEEcCCceEEecCCCceEEEEEccchhH-HHhhc---------ccchheeeeeccchhhhhccccccccccCC
Confidence 44454 344433332 34452 2322 11222 13333444333322222222110 01
Q ss_pred ---CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcC
Q 004015 203 ---DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDP 278 (779)
Q Consensus 203 ---d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSP 278 (779)
|...+.+.+|-..+ ++ .| -.+++++.|+++.+|+-. +.+++..+.+|..-|+.+.|||
T Consensus 316 ~~se~~~~Al~rY~~~~-~~--------------~~---erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVL-KD--------------SG---ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred ChHHHHHHHHHHHHHhh-cc--------------Cc---ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 11112233332110 00 01 135678899999999965 5669999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
||+++|+||.|.. |++||-.++ +.+-.| ||+. +.|+.|+||.|++.|+++|.|.|++||++.+
T Consensus 378 d~r~IASaSFDkS-VkLW~g~tG--------------k~lasf-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 378 DGRYIASASFDKS-VKLWDGRTG--------------KFLASF-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred CccEEEEeecccc-eeeeeCCCc--------------chhhhh-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 9999999999975 999999887 445555 7765 4599999999999999999999999999999
Q ss_pred CCCceeeccCCCCCC
Q 004015 359 LGGSVNFQPTDANFT 373 (779)
Q Consensus 359 ~gg~~~~~~H~~~~~ 373 (779)
..-...+-+|.+.+-
T Consensus 441 kKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVF 455 (480)
T ss_pred eeecccCCCCCceEE
Confidence 877777788987765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=197.45 Aligned_cols=200 Identities=21% Similarity=0.338 Sum_probs=139.2
Q ss_pred CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCc--eeEeeCCCcee
Q 004015 82 FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPR--WLAYSGSPVVV 156 (779)
Q Consensus 82 f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpR--wLAyas~~~i~ 156 (779)
+.++|+.++|+ +++|+. +.|.+|++|.+.|..++-...+|-.|. ..+.++|| |+|.++.+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV------------wdV~F~P~GyYFatas~D--- 514 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV------------WDVQFAPRGYYFATASHD--- 514 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce------------eeEEecCCceEEEecCCC---
Confidence 46899999996 555554 677999999999999998888874322 22444453 45554322
Q ss_pred cCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCc
Q 004015 157 SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGT 236 (779)
Q Consensus 157 ~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~ 236 (779)
.+.+-|+.+-.+-+-.=.-+++|...- ..-|+
T Consensus 515 ------------------------~tArLWs~d~~~PlRifaghlsDV~cv-------~FHPN----------------- 546 (707)
T KOG0263|consen 515 ------------------------QTARLWSTDHNKPLRIFAGHLSDVDCV-------SFHPN----------------- 546 (707)
T ss_pred ------------------------ceeeeeecccCCchhhhcccccccceE-------EECCc-----------------
Confidence 222222222211111000112222200 00011
Q ss_pred cCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 237 VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 237 v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
...+++++.|.+|++||+.++..++.|.+|+++|.+|+|||+|++||+|+.||. |+|||+..+ .
T Consensus 547 -s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~--------------~ 610 (707)
T KOG0263|consen 547 -SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANG--------------S 610 (707)
T ss_pred -ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCC--------------c
Confidence 013456778999999999999999999999999999999999999999999997 999999875 2
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+..+ +|+ ...|.+|.||.||..||+|+.|.+|++||+....+.
T Consensus 611 ~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 22333 565 456999999999999999999999999999765443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=189.09 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=162.7
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEE-EEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE-YAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l-~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..||||||+.|...+++.+. +..|..|+++ ++.||. +.+++|.+||..+++++ ..|.+|.... +++.+
T Consensus 136 D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~I-------t~Law 208 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWI-------TALAW 208 (480)
T ss_pred CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccce-------eEEee
Confidence 48999999999999999985 7899999997 566765 78999999999998754 5566664322 12444
Q ss_pred cceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 138 GPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
-|+-+.| |.||.++.+ +.+|+.- ..+.+ +...|++.
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~-----------------------------~~~~~---~~lsgHT~-------- 248 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTK-----------------------------LGTCV---RTLSGHTA-------- 248 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEcc-----------------------------CceEE---EEeccCcc--------
Confidence 5554444 566655432 2233210 00000 00011110
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc-----------CCCCE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD-----------PSGIL 282 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFS-----------PdG~l 282 (779)
++.....+. -+.+++++.|++|++|+...+.++..|++|..-|+.|+.| |.|..
T Consensus 249 ---------~VTCvrwGG------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 249 ---------SVTCVRWGG------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred ---------ceEEEEEcC------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 011111111 1345788999999999999999999999999999998866 55555
Q ss_pred -------------------------EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 283 -------------------------LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 283 -------------------------LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
|++||+|.+ +.+|+-... .+.+.++ .| +.+.|..+.|||
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~~-------------kkpi~rm-tg-Hq~lVn~V~fSP 377 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFKS-------------KKPITRM-TG-HQALVNHVSFSP 377 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCce-EEEeccccc-------------ccchhhh-hc-hhhheeeEEECC
Confidence 999999988 789985432 1222222 23 245599999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 338 DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|++|||++|-|..|++|+-.++.-..+|++|-..+.
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 999999999999999999999988899999954443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=187.32 Aligned_cols=229 Identities=14% Similarity=0.195 Sum_probs=164.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc----C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
+.+++|+..+.+.+++|+. .+.|.++.|. . .+...+.|+.|++|++.+-+.+..|.+|... +
T Consensus 197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R------------V 264 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR------------V 264 (459)
T ss_pred CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh------------h
Confidence 6799999999999999985 7899999995 2 3444589999999999999999999888532 2
Q ss_pred cceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
..+++.| ++|+.++. ..+..-|-....+++. .--|+. +.+. .
T Consensus 265 s~VafHPsG~~L~Tasf---------------------------D~tWRlWD~~tk~ElL---~QEGHs--~~v~--~-- 308 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASF---------------------------DSTWRLWDLETKSELL---LQEGHS--KGVF--S-- 308 (459)
T ss_pred eeeeecCCCceeeeccc---------------------------ccchhhcccccchhhH---hhcccc--cccc--e--
Confidence 2344433 66666542 2222222222211111 000100 0000 0
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+ ....|. .++++..|..-+|||+++++++..|.+|..+|..|+|||+|..|||||.|++ ++|
T Consensus 309 ----------ia---f~~DGS---L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kV 371 (459)
T KOG0272|consen 309 ----------IA---FQPDGS---LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKV 371 (459)
T ss_pred ----------eE---ecCCCc---eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEE
Confidence 00 001111 2345667778899999999999999999999999999999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
||++.- ..+|.+. +++ .-|..|+|+| .|++|+++|.|+|++||.-......-++.+|.+.+.
T Consensus 372 WDLR~r--------------~~ly~ip-AH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 372 WDLRMR--------------SELYTIP-AHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred eeeccc--------------ccceecc-ccc-chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 999864 3366653 332 3489999999 889999999999999999999888889999987654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=175.05 Aligned_cols=235 Identities=14% Similarity=0.151 Sum_probs=168.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC------cEEEEEecCCcccCCCCCC
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAI-CQAAQVHCFDAATL------EIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~------e~l~tl~t~p~~~~~p~s~ 131 (779)
+.+.+.|||.-|...+|-|..+ +.|..++|+ +.+||. ++++...||++.+. +..+.|.+|..-..|
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc---- 150 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC---- 150 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEE----
Confidence 4578999999999999999996 579999994 788987 78999999999976 234455555321101
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
. |||- +..++ + +|...+.+.|-.+.++++..=.-+.||...
T Consensus 151 --------C----~f~d--D~~il------------T--------~SGD~TCalWDie~g~~~~~f~GH~gDV~s----- 191 (343)
T KOG0286|consen 151 --------C----RFLD--DNHIL------------T--------GSGDMTCALWDIETGQQTQVFHGHTGDVMS----- 191 (343)
T ss_pred --------E----EEcC--CCceE------------e--------cCCCceEEEEEcccceEEEEecCCcccEEE-----
Confidence 0 2221 11111 1 123455666666665543211112222210
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt 291 (779)
-++.|. . ..+|+++.-|+..+|||++.+.++++|.+|...|++|+|-|+|.-+||||+|++
T Consensus 192 --lsl~p~----------~-------~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 192 --LSLSPS----------D-------GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred --EecCCC----------C-------CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 111121 0 125778888999999999999999999999999999999999999999999998
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.++||++.. +.+..+..-.....|.+++||..|++|.+|..|.+++|||.-.....-.+.+|.+.
T Consensus 253 -cRlyDlRaD--------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 253 -CRLYDLRAD--------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR 317 (343)
T ss_pred -eEEEeecCC--------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence 899999975 22222222222345999999999999999999999999999888777788999887
Q ss_pred CC
Q 004015 372 FT 373 (779)
Q Consensus 372 ~~ 373 (779)
++
T Consensus 318 vS 319 (343)
T KOG0286|consen 318 VS 319 (343)
T ss_pred eE
Confidence 76
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=190.20 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=147.1
Q ss_pred cCCCCCCCc---CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcE-EEEEeCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 53 YHDLGNGSS---VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 53 ~~~~~~~~~---~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rl-LaVs~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
|.++|+... ..++|||||..+|-|+.|+. +.+.|.+|.|. ++. |..++|++|++||+...++.+++.. |.+
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p- 435 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEP- 435 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCc-
Confidence 455555444 35889999999999999996 57889999995 454 4558999999999999999999843 332
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
+.+..+|+.| .|.+|.
T Consensus 436 ---------~QfscvavD~----------------------------------sGelV~--------------------- 451 (893)
T KOG0291|consen 436 ---------IQFSCVAVDP----------------------------------SGELVC--------------------- 451 (893)
T ss_pred ---------eeeeEEEEcC----------------------------------CCCEEE---------------------
Confidence 1223333211 112110
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVT 285 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLAT 285 (779)
+.+...-.|.||++++++.+..+.+|.+||.+|+|+|+|.+||+
T Consensus 452 ------------------------------------AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 452 ------------------------------------AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred ------------------------------------eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 01112236999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+|.|.| ||+||+... .++++.+ .+ ...+..++|+|||+-||+++.||-|.+||+.......++
T Consensus 496 ~SWDkT-VRiW~if~s----------~~~vEtl-~i-----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 496 GSWDKT-VRIWDIFSS----------SGTVETL-EI-----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred ccccce-EEEEEeecc----------CceeeeE-ee-----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 999987 999999763 1122222 21 235899999999999999999999999999887655555
Q ss_pred cc
Q 004015 366 QP 367 (779)
Q Consensus 366 ~~ 367 (779)
.+
T Consensus 559 dg 560 (893)
T KOG0291|consen 559 DG 560 (893)
T ss_pred cc
Confidence 44
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=177.09 Aligned_cols=288 Identities=12% Similarity=0.187 Sum_probs=175.3
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEE-----cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-----SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-----s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...++||||..+.++++++.+.+.|.+... +.++|.|++.+.|-.|++.....++++.+|...
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~------------ 322 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS------------ 322 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc------------
Confidence 358999999999999999999766543333 588899999999999999999999999888432
Q ss_pred ccceeecC--ceeEeeCCC--ceecCCCccCCccccccc----ccccc-cCCCcc--------eeeeec---ccccch--
Q 004015 137 YGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSR----SFSGF-ASNGSR--------VAHYAK---ESSKHL-- 194 (779)
Q Consensus 137 ~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~----~~s~~-~s~g~~--------va~~A~---~~sK~L-- 194 (779)
+..+++++ .+|-.++.+ +..|+.|......+.+.. ...-- .+.+.+ +..... ..+++-
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 23455555 444444433 334554432222221100 00000 000111 100000 000000
Q ss_pred --h---ceeeecCCcccccccccccc--ccCC---------CcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCC
Q 004015 195 --A---AGIVNLGDLGYKKLSQYCSE--FLPD---------SQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVS 257 (779)
Q Consensus 195 --a---~Gl~~lGd~~~~~ls~y~~~--l~p~---------~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s 257 (779)
. .|+....+..+-.++-+ .+ ++.+ +..+...+ +++ ...++-+..||.|+||.+..
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~-~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-------~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACI-SDIVLLQDQTKVSSIPIGYESSAVAVSPD-------GSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEec-CcEEEEecCCcceeeccccccceEEEcCC-------CCEEEEecccceEEEEEecC
Confidence 0 01111111000000000 00 0000 00000011 111 12445677899999999987
Q ss_pred Cc--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEE
Q 004015 258 KN--VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 335 (779)
Q Consensus 258 ~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF 335 (779)
.. ....+..|..+|++|+|||||++||.++..+. +.+||+... ....-+.+++.++|.+++|
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~---------------~~~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASR---------------EVKTNRWAFHTAKINCVAW 538 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccC---------------ceecceeeeeeeeEEEEEe
Confidence 65 34456799999999999999999999999987 899999874 1123345666789999999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCCceeec-cCCCCCCccCCCcCCcceecCCCCCCCCCCCCcccc
Q 004015 336 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQ-PTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCA 402 (779)
Q Consensus 336 SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~-~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~ 402 (779)
||++++||+||.|.+|+||.+......+.++ .| +.. ...+.|+++.++..
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH----------------~~g-Vn~v~wlde~tvvS 589 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH----------------LGG-VNSVAWLDESTVVS 589 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEecccc----------------ccC-ceeEEEecCceEEe
Confidence 9999999999999999999999987776664 45 333 45677888877743
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=184.50 Aligned_cols=192 Identities=19% Similarity=0.321 Sum_probs=150.6
Q ss_pred CCCEEEEEECCCCc--EEEEE-eCCCCEEEEEEc--CcEEE-EEeCCeEEEEeC-CCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQS--YVHML-KFRSPIYSVRCS--SRVVA-ICQAAQVHCFDA-ATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge--~V~tL-kf~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~-~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
....+++|++.+++ ..+++ .+...|.+++|+ +++++ .+.|.+|+|||+ ..+.+++++.+|+....
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-------- 250 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-------- 250 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE--------
Confidence 35789999998777 66666 356789999995 55555 478899999999 56689999998854211
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
. ++|. | .|.
T Consensus 251 ----~-------~~f~-------------p--------------~g~--------------------------------- 259 (456)
T KOG0266|consen 251 ----S-------VAFS-------------P--------------DGN--------------------------------- 259 (456)
T ss_pred ----E-------EEec-------------C--------------CCC---------------------------------
Confidence 1 1222 1 111
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.+++++.|++|+|||+.+++++..|++|.++|++++|+++|.+|+++|.||. |+
T Consensus 260 -------------------------~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~ 313 (456)
T KOG0266|consen 260 -------------------------LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IR 313 (456)
T ss_pred -------------------------EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EE
Confidence 1234578899999999999999999999999999999999999999999987 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|||+..+ ...++..+. +.... .+.+++|||+++||++++.|+++++|++........+.+|...
T Consensus 314 vwd~~~~------------~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLETG------------SKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred EEECCCC------------ceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 9999876 111223343 33333 6899999999999999999999999999998888888888654
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=182.85 Aligned_cols=183 Identities=21% Similarity=0.255 Sum_probs=145.4
Q ss_pred CcCCCCCCCc---CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 52 NYHDLGNGSS---VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 52 ~~~~~~~~~~---~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.||+.|.-.. ...+-++||+.|++.+..... ...|++|+|. +.+++. ++|..=+|||++|++++..|.+|..+
T Consensus 268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc
Confidence 3566664433 357899999999998887765 5689999995 677776 68888899999999999999887432
Q ss_pred cCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCc
Q 004015 125 MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDL 204 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~ 204 (779)
. ++ ++|+ | +|.
T Consensus 348 I--------------~~-----V~fs------------------------P---NGy----------------------- 358 (459)
T KOG0272|consen 348 I--------------LS-----VAFS------------------------P---NGY----------------------- 358 (459)
T ss_pred e--------------ee-----EeEC------------------------C---Cce-----------------------
Confidence 1 00 1111 1 111
Q ss_pred cccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEE
Q 004015 205 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILL 283 (779)
Q Consensus 205 ~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lL 283 (779)
++++++.|++++|||++..+.+.++.||++-|+.|+|+| .|.+|
T Consensus 359 -----------------------------------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 359 -----------------------------------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred -----------------------------------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 345567899999999999999999999999999999999 79999
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 284 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 284 ATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+|||.|.+ ++||...+. ..+..| -|+. .+|.+++.|+||+++++++-|+|+++|.
T Consensus 404 ~TasyD~t-~kiWs~~~~--------------~~~ksL-aGHe-~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNT-VKIWSTRTW--------------SPLKSL-AGHE-GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcc-eeeecCCCc--------------ccchhh-cCCc-cceEEEEeccCCceEEEeccCceeeecc
Confidence 99999987 899987765 334455 4544 4699999999999999999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=176.65 Aligned_cols=197 Identities=17% Similarity=0.298 Sum_probs=142.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--c-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--R-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~--r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.++||+. +|..+.+|.+ +.||.+|++|+ . +|+.+.|+++.+||..+++..+++.-|..+
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------- 320 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------- 320 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--------------
Confidence 478999997 5777888875 89999999983 3 555688999999999999988888655211
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++.-.|.-.
T Consensus 321 --~lDVdW~~~--------------------------------------------------------------------- 329 (524)
T KOG0273|consen 321 --ALDVDWQSN--------------------------------------------------------------------- 329 (524)
T ss_pred --ccceEEecC---------------------------------------------------------------------
Confidence 110011100
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..|+....+|.|+|+-+...+++.+|.+|.++|++|+|+|.|.+|+|||.|+| ++||..
T Consensus 330 --------------------~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~ 388 (524)
T KOG0273|consen 330 --------------------DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSM 388 (524)
T ss_pred --------------------ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeec
Confidence 12334456899999999999999999999999999999999999999999998 899985
Q ss_pred CCCCC---------------CCC-------------CccCCCCceeEEEEeecCC-------CcccEEEEEEcCCCCEEE
Q 004015 299 IPGIL---------------GTS-------------SACDAGTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIM 343 (779)
Q Consensus 299 ~~~~~---------------g~~-------------s~~~~~~s~~~l~~l~rG~-------t~a~I~sIaFSpDg~~LA 343 (779)
...-. |+. -+.-...+...+|...+|. +..+|++++|||+|+|+|
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 43200 000 0000011223344444432 234599999999999999
Q ss_pred EEeCCCeEEEEecCCCCCceeec
Q 004015 344 ISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 344 tgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+|+.||.||||++..+.-.-+.+
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred ecCCCCeeEeccccchheeEeec
Confidence 99999999999998864433333
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=160.44 Aligned_cols=223 Identities=15% Similarity=0.204 Sum_probs=153.2
Q ss_pred CCEEEEEECCC-----CcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~T-----ge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
..++.+|+|.+ |..++.++. ...|.++.++ ...|.++.|+++++||+.+++..+.|.+|.....
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl------- 109 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL------- 109 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-------
Confidence 47899998754 666777776 5678899995 3456778999999999999999999988854221
Q ss_pred cccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc-ccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG-YKKLS 210 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~-~~~ls 210 (779)
.+|+++ |.+..++. .+++..|- .+....+.+++.+ ..=++
T Consensus 110 -----sva~s~dn~qivSGSr---------------------------DkTiklwn-----t~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 110 -----SVAFSTDNRQIVSGSR---------------------------DKTIKLWN-----TLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred -----EEEecCCCceeecCCC---------------------------cceeeeee-----ecccEEEEEecCCCcCcEE
Confidence 133332 22222221 12221111 0111111222211 10011
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
-. ...|+.. +..++++..|++|+|||+++.+....|.+|++.+++++|||||.++++|+.||
T Consensus 153 cv--rfsP~~~----------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 153 CV--RFSPNES----------------NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EE--EEcCCCC----------------CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 00 0112210 12456788999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
. +.+||+..+ +++|.+.-. ..|.++||+|.--||+.+...+ |+||++.+......++
T Consensus 215 ~-~~LwdL~~~--------------k~lysl~a~---~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 215 E-AMLWDLNEG--------------KNLYSLEAF---DIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELK 271 (315)
T ss_pred e-EEEEEccCC--------------ceeEeccCC---CeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcc
Confidence 8 899999876 678888532 3599999999998888776554 9999999876655554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-16 Score=159.99 Aligned_cols=208 Identities=18% Similarity=0.252 Sum_probs=142.9
Q ss_pred EEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeC
Q 004015 78 HMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSG 151 (779)
Q Consensus 78 ~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas 151 (779)
++|+. -..|+++.|+ +++|..++|+++.|||.-|..+.+.+.--.. ..-..|.+| .++|.++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~------------WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS------------WVMTCAYSPSGNFVACGG 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce------------eEEEEEECCCCCeEEecC
Confidence 66764 5789999995 5667779999999999999888877732110 111123333 4555543
Q ss_pred CCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCC
Q 004015 152 SPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGG 231 (779)
Q Consensus 152 ~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~ 231 (779)
-+-+ ...|+-...+.+..+ ..+|+| .|+.+|-.-.+|+.
T Consensus 117 LdN~--------------Csiy~ls~~d~~g~~----~v~r~l------~gHtgylScC~f~d----------------- 155 (343)
T KOG0286|consen 117 LDNK--------------CSIYPLSTRDAEGNV----RVSREL------AGHTGYLSCCRFLD----------------- 155 (343)
T ss_pred cCce--------------eEEEecccccccccc----eeeeee------cCccceeEEEEEcC-----------------
Confidence 2100 000110000111110 112222 25555443333332
Q ss_pred CCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 232 KSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 232 ~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
.+++++++.|.+..+||+.+++.+..|.+|++.|.+|.++| +++.++||+.|++ .+|||++.+
T Consensus 156 ------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~~--------- 219 (343)
T KOG0286|consen 156 ------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRSG--------- 219 (343)
T ss_pred ------CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccCc---------
Confidence 13567788999999999999999999999999999999999 9999999999988 799999975
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+...| .|+ ...|.+|+|-|+|.-||+||+|+|+++|||.....
T Consensus 220 -----~c~qtF-~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 220 -----QCVQTF-EGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred -----ceeEee-ccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 344555 344 34699999999999999999999999999976533
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=167.78 Aligned_cols=225 Identities=16% Similarity=0.324 Sum_probs=155.9
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEEE-eCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAIC-QAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+|++||+.||++..+|+. ...|.+|+|. ++++|.+ .|-.|.+||..+ ++|+..+.+|... ..
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~------------vS 197 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG------------VS 197 (406)
T ss_pred ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc------------ee
Confidence 6799999999999999986 5569999995 7888875 445599999997 6788877776421 11
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+++=| .+++..+++ .++ .+++. + +.||-..
T Consensus 198 ~V~f~P~gd~ilS~srD---------------------------~ti--k~We~------------~------tg~cv~t 230 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRD---------------------------NTI--KAWEC------------D------TGYCVKT 230 (406)
T ss_pred eEEEEecCCeeeecccc---------------------------cce--eEEec------------c------cceeEEe
Confidence 222111 233332221 111 11111 0 1122111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---------------CC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---------------GI 281 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd---------------G~ 281 (779)
++....-....- ....|. .+++.+.+.+|++|-+.++.+.+.|+.|..+|-|++|-|. |.
T Consensus 231 ~~~h~ewvr~v~--v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~ 305 (406)
T KOG0295|consen 231 FPGHSEWVRMVR--VNQDGT---IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ 305 (406)
T ss_pred ccCchHhEEEEE--ecCCee---EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence 111110000000 001122 2456678899999999999999999999999999998764 35
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 282 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+|+++|.|++ |++||+.++ .+|++|. |+. ..|.+++|+|-|+||++..+|+|++|||++...+
T Consensus 306 ~l~s~SrDkt-Ik~wdv~tg--------------~cL~tL~-ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 306 VLGSGSRDKT-IKIWDVSTG--------------MCLFTLV-GHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEeecccce-EEEEeccCC--------------eEEEEEe-ccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 9999999987 999999986 6788883 543 4599999999999999999999999999999988
Q ss_pred ceeeccCC
Q 004015 362 SVNFQPTD 369 (779)
Q Consensus 362 ~~~~~~H~ 369 (779)
..++..|.
T Consensus 369 mk~~~ah~ 376 (406)
T KOG0295|consen 369 MKTLEAHE 376 (406)
T ss_pred eeccCCCc
Confidence 88887763
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=178.46 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=172.2
Q ss_pred CEEEEEECCCCcEEEEEeCC-C-CEEEE---EEcCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-S-PIYSV---RCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s-~V~sV---~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.+++||.++++++...+-+ + .+..+ .-++++++++.+.+|.+||..+++....+-++.... +.
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI-----------~D 328 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI-----------LD 328 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh-----------ee
Confidence 67999999999998876653 1 13222 225889999999999999999999998887764321 11
Q ss_pred ceeecC--ceeEeeCCCc--eecCCCccCCcccccc-ccccc--ccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 139 PLAVGP--RWLAYSGSPV--VVSNDGRVNPQHLMQS-RSFSG--FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 139 piAlgp--RwLAyas~~~--i~~~sgrvspq~ls~s-~~~s~--~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.--+|| ++||.+.+.. ...+.....++-+.+. ..+-. ..+.|.++++.++|.+- -++.+.+...+. .
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv----ilWr~~~~~~~~-~- 402 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV----ILWRLNNNCSKS-L- 402 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE----EEEEecCCcchh-h-
Confidence 234566 7888887742 2222211222211111 01111 12344556555555332 122221111000 0
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-----EE----EEeccCCCCeEEEEEcCCCCE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----VI----AQFRAHKSPISALCFDPSGIL 282 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-----~v----~~f~aHt~~IsaLaFSPdG~l 282 (779)
|....-...+++..... .+ .+ ...|++.++|+++++|++...+ .+ .+..+|...|+|++.+|+.++
T Consensus 403 -~~a~~~gH~~svgava~-~~-~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 403 -CVAQANGHTNSVGAVAG-SK-LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred -hhhhhcccccccceeee-cc-cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 00000000011111100 00 01 1246788999999999998621 12 234599999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 283 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 283 LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+||||.|.+ .+||++... .++..| +|++. .|+|+.|||..+.+||+|.|+||+||.|.++.+.
T Consensus 478 iAT~SqDkt-aKiW~le~~--------------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl 540 (775)
T KOG0319|consen 478 IATGSQDKT-AKIWDLEQL--------------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL 540 (775)
T ss_pred EEecccccc-eeeecccCc--------------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence 999999987 899999853 455555 56553 3999999999999999999999999999999999
Q ss_pred eeeccCCCCCC
Q 004015 363 VNFQPTDANFT 373 (779)
Q Consensus 363 ~~~~~H~~~~~ 373 (779)
-+|.+|+..+-
T Consensus 541 kT~eGH~~aVl 551 (775)
T KOG0319|consen 541 KTFEGHTSAVL 551 (775)
T ss_pred eeecCccceeE
Confidence 99999965443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=144.74 Aligned_cols=171 Identities=18% Similarity=0.349 Sum_probs=131.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|++||+.+++.+..+. +...|.+++++ +++++++. ++.|++||+.+.+.+..+..+... ..
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~------------i~- 181 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE------------VN- 181 (289)
T ss_pred CeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc------------cc-
Confidence 679999999999998887 46789999996 47777766 999999999988877777543210 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.. ++.
T Consensus 182 ------~~~~~~---------------------------~~~-------------------------------------- 190 (289)
T cd00200 182 ------SVAFSP---------------------------DGE-------------------------------------- 190 (289)
T ss_pred ------eEEECC---------------------------CcC--------------------------------------
Confidence 111210 010
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|++.++++++.+|+ |++|++.
T Consensus 191 --------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~ 249 (289)
T cd00200 191 --------------------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLR 249 (289)
T ss_pred --------------------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcC
Confidence 0112233789999999999999999999999999999999999999998887 8999987
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
.+ ..+..+. + ....|.+++|+|++++|++++.||+++||+
T Consensus 250 ~~--------------~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TG--------------ECVQTLS-G-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred Cc--------------eeEEEcc-c-cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 64 2333443 2 234599999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=167.23 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=145.0
Q ss_pred CCCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...+|||||+ ..+.++++|+. ...|++++|+ +++|+ ++.|++|+|||+.+++++.++.+|...
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~------------ 290 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG------------ 290 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc------------
Confidence 4689999999 55689999974 7889999996 45555 578999999999999999999887431
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+. -+++.. +|.
T Consensus 291 ---is----~~~f~~---------------------------d~~----------------------------------- 301 (456)
T KOG0266|consen 291 ---IS----GLAFSP---------------------------DGN----------------------------------- 301 (456)
T ss_pred ---eE----EEEECC---------------------------CCC-----------------------------------
Confidence 11 112210 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEEEEcCCCCEEEEEeCCCCE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSP--ISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~--IsaLaFSPdG~lLATaS~DGt~ 292 (779)
.++.++.||.|+|||+.++. ++..+..+..+ +++++|+|+|++|+++..|++
T Consensus 302 -----------------------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~- 357 (456)
T KOG0266|consen 302 -----------------------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT- 357 (456)
T ss_pred -----------------------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-
Confidence 12234568999999999999 67888888766 999999999999999999987
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+++||+..+ .....+ +++... .+.+..++++++|+.+|+.|++|++|++.+......+.+|.
T Consensus 358 ~~~w~l~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 358 LKLWDLRSG------------KSVGTY---TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred EEEEEccCC------------cceeee---cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 899999865 111222 333332 36677789999999999999999999999977777888883
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-14 Score=141.23 Aligned_cols=186 Identities=18% Similarity=0.318 Sum_probs=139.4
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--cEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~--rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|++||+.+++.+..+.. ...|..+.++. ++++++. ++.|++||+.+.+....+..+...
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------- 137 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-------------- 137 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc--------------
Confidence 47899999999888888875 55899999963 7787776 999999999988887777543210
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. ++.
T Consensus 138 -i----~~~~~~~---------------------------~~~------------------------------------- 148 (289)
T cd00200 138 -V----NSVAFSP---------------------------DGT------------------------------------- 148 (289)
T ss_pred -E----EEEEEcC---------------------------cCC-------------------------------------
Confidence 1 0112210 000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
.++.+..+|.|++||+.+++.+..+..|...|.+++|+|+|+.|++++.+|. |++||+
T Consensus 149 ---------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~ 206 (289)
T cd00200 149 ---------------------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDL 206 (289)
T ss_pred ---------------------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEEC
Confidence 0112234789999999999999999999999999999999999999999987 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
..+ ..+..+. + ....|.+++|+|++.++++++.||++++|++........+..|.
T Consensus 207 ~~~--------------~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 207 STG--------------KCLGTLR-G-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred CCC--------------ceecchh-h-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 764 1222221 2 12359999999999999999989999999998765555555553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=168.19 Aligned_cols=223 Identities=16% Similarity=0.196 Sum_probs=155.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.||+..|..+|+++.. ..||++.+|= ++.|++ +.|.+|+||+..|+++++++..|+.-. ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI------------R~ 102 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI------------RS 102 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce------------ee
Confidence 6699999999999999997 6899999993 455555 678899999999999999999986522 12
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++-| -++-.+ |+.-++.-|-++-. -+.-...-|+.. |.-...
T Consensus 103 iavHPt~P~vLts---------------------------SDDm~iKlW~we~~--wa~~qtfeGH~H------yVMqv~ 147 (794)
T KOG0276|consen 103 IAVHPTLPYVLTS---------------------------SDDMTIKLWDWENE--WACEQTFEGHEH------YVMQVA 147 (794)
T ss_pred eeecCCCCeEEec---------------------------CCccEEEEeeccCc--eeeeeEEcCcce------EEEEEE
Confidence 44433 112122 22222222221110 000001112211 111110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG--ILLVTASVQGHNINI 295 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG--~lLATaS~DGt~I~V 295 (779)
.+|-. +.+|++++-|++|+||.+.+..+..+|++|...|+|+.|=+-| -+|+||++|-+ |+|
T Consensus 148 ---------fnPkD------~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKv 211 (794)
T KOG0276|consen 148 ---------FNPKD------PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKV 211 (794)
T ss_pred ---------ecCCC------ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEE
Confidence 01111 2257888899999999999999999999999999999999876 49999999955 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
||..+. .++.+| .|+++ .|..++|.|.=.+|++||.|||++||.-.+|..+-++
T Consensus 212 WDyQtk--------------~CV~TL-eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 212 WDYQTK--------------SCVQTL-EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred eecchH--------------HHHHHh-hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 998864 344455 46543 4999999999999999999999999998887654433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-15 Score=153.04 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=164.6
Q ss_pred CcCCCCCCCc---CCCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCc
Q 004015 52 NYHDLGNGSS---VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPI 123 (779)
Q Consensus 52 ~~~~~~~~~~---~~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~ 123 (779)
.|+++|.+-. ..+.|.||+. ..-+-...++. .+.|..|.++ ..++.++.|++|+.||+.|+++++.+++|..
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~ 133 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS 133 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc
Confidence 3555555544 3578999995 33444556664 7899999995 4567778999999999999999999998854
Q ss_pred ccCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecc---cccchhceeee
Q 004015 124 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE---SSKHLAAGIVN 200 (779)
Q Consensus 124 ~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~---~sK~La~Gl~~ 200 (779)
+... +.|.-.|+..+..+ ++..++..|.+. +.|...
T Consensus 134 ~vNs---------~~p~rrg~~lv~Sg---------------------------sdD~t~kl~D~R~k~~~~t~~----- 172 (338)
T KOG0265|consen 134 FVNS---------LDPSRRGPQLVCSG---------------------------SDDGTLKLWDIRKKEAIKTFE----- 172 (338)
T ss_pred eeee---------cCccccCCeEEEec---------------------------CCCceEEEEeecccchhhccc-----
Confidence 3211 01222222223222 233333333221 212110
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
..| .+++.+. +. . ...+.++.-|+.|++||++.+..+.++++|..+|+.|..+|+|
T Consensus 173 ---~ky-qltAv~f----~d--------~--------s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 173 ---NKY-QLTAVGF----KD--------T--------SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred ---cce-eEEEEEe----cc--------c--------ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence 000 0010000 00 0 0112345567899999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+|.+-+-|-+ +++||+++..+.. +++..+..+.++- ....++|||+++++..|+.|+.++|||...
T Consensus 229 s~llsnsMd~t-vrvwd~rp~~p~~----------R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 229 SFLLSNSMDNT-VRVWDVRPFAPSQ----------RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred Cccccccccce-EEEEEecccCCCC----------ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 99999999976 8999999873322 3344443332222 267899999999999999999999999998
Q ss_pred CCCceeeccCCCCCC
Q 004015 359 LGGSVNFQPTDANFT 373 (779)
Q Consensus 359 ~gg~~~~~~H~~~~~ 373 (779)
.+....+-+|...+.
T Consensus 298 r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 298 RRILYKLPGHYGSVN 312 (338)
T ss_pred ccEEEEcCCcceeEE
Confidence 888888888854443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=156.01 Aligned_cols=223 Identities=17% Similarity=0.277 Sum_probs=155.1
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCE-EEEEE-c-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPI-YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V-~sV~~-s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
..+++.+||..+|+....+.|.+.. .+|.| + ..++..+.++.|+||-+..-+.+.++.+|.++.. ++.++
T Consensus 296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-------alk~n 368 (524)
T KOG0273|consen 296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-------ALKWN 368 (524)
T ss_pred CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE-------EEEEC
Confidence 3578999999999999999997666 88999 3 4455557889999999999999999998865322 13333
Q ss_pred ceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
|. ...||.++.+ +.+|+.+.-...+ .+-+ -+|++ |....
T Consensus 369 ~t---g~LLaS~SdD~TlkiWs~~~~~~~~--------------~l~~-----Hskei-----------------~t~~w 409 (524)
T KOG0273|consen 369 PT---GSLLASCSDDGTLKIWSMGQSNSVH--------------DLQA-----HSKEI-----------------YTIKW 409 (524)
T ss_pred CC---CceEEEecCCCeeEeeecCCCcchh--------------hhhh-----hccce-----------------eeEee
Confidence 32 1356665543 4445322110000 0000 01111 11111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.|.+... .++ -.+..++....+++|++||+..+.++.+|..|+.||.+|+|||+|++||+|+.||. |+||
T Consensus 410 sp~g~v~---~n~------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iw 479 (524)
T KOG0273|consen 410 SPTGPVT---SNP------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIW 479 (524)
T ss_pred cCCCCcc---CCC------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEec
Confidence 1222110 000 11224567788999999999999999999999999999999999999999999996 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+++++ .+|+-.+|. ..|..++|+-+|.+|+++-+|+.+.|-|+.
T Consensus 480 s~~~~---------------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STKTG---------------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cccch---------------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99875 344444553 349999999999999999999999998874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-15 Score=156.47 Aligned_cols=189 Identities=10% Similarity=0.177 Sum_probs=143.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
-.++|+.|++.+|.+++++.. +..|+.|+.+ +.++|. +.+.+|++|=+.+++|+..++.|..+.-|
T Consensus 213 rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc---------- 282 (406)
T KOG0295|consen 213 RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC---------- 282 (406)
T ss_pred cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE----------
Confidence 468999999999999999986 5689999997 567776 57889999999999999888887543222
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+ |++. ....++ .+ +. .
T Consensus 283 --i-------~wap-------------~~~~~~-i~-----------------------------~a------------t 298 (406)
T KOG0295|consen 283 --I-------AWAP-------------ESSYPS-IS-----------------------------EA------------T 298 (406)
T ss_pred --E-------Eecc-------------cccCcc-hh-----------------------------hc------------c
Confidence 2 2221 000000 00 00 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
++.++ + ..+.+++.|++|++||+.++.++.++.+|..-|..++|+|-|+||+++.+|++ ++|||
T Consensus 299 ~~~~~------------~---~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwd 362 (406)
T KOG0295|consen 299 GSTNG------------G---QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWD 362 (406)
T ss_pred CCCCC------------c---cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEE
Confidence 00000 0 02345678999999999999999999999999999999999999999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+... +++.++. .+.+.|.+++|..+.-|+.+|+-|.+++||..
T Consensus 363 l~~~--------------~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNL--------------QCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccc--------------eeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9875 4555553 23345999999999999999999999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=164.24 Aligned_cols=207 Identities=15% Similarity=0.217 Sum_probs=152.4
Q ss_pred CCCEEEEEECCC-CcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~T-ge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
..+.|+||++.. +.+++++.. ..+|.+++|+ .++|.+++|..|++||+.|++++..+.+-..+.
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~----------- 303 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT----------- 303 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-----------
Confidence 358899999987 999999875 7799999997 578999999999999999999999987531100
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
++- + +|
T Consensus 304 --cvk-------f-------------~p---------------------------------------------------- 309 (503)
T KOG0282|consen 304 --CVK-------F-------------HP---------------------------------------------------- 309 (503)
T ss_pred --eee-------c-------------CC----------------------------------------------------
Confidence 000 0 01
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
++ ...|..+..++.|+.||+++++++..+..|-++|..+.|=++|+.++|+|+|++ ++||
T Consensus 310 --d~-----------------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riW 369 (503)
T KOG0282|consen 310 --DN-----------------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIW 369 (503)
T ss_pred --CC-----------------CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEE
Confidence 10 002334567899999999999999999999999999999999999999999987 8999
Q ss_pred eCCCCCCC---------CC-----------CccCCCCceeEEEE------e-----ecCCCccc-EEEEEEcCCCCEEEE
Q 004015 297 KIIPGILG---------TS-----------SACDAGTSYVHLYR------L-----QRGLTNAV-IQDISFSDDSNWIMI 344 (779)
Q Consensus 297 di~~~~~g---------~~-----------s~~~~~~s~~~l~~------l-----~rG~t~a~-I~sIaFSpDg~~LAt 344 (779)
+.....+- +. -+++.......++. + ..|+..+- -..+.|||||++|++
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 97654220 00 01111122222221 1 12332222 347999999999999
Q ss_pred EeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 345 SSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 345 gS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|+.||.+.+||.++....-.+++|+....
T Consensus 450 GdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ecCCccEEEeechhhhhhhccccCCcceE
Confidence 99999999999999888888899854433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-14 Score=149.03 Aligned_cols=184 Identities=17% Similarity=0.287 Sum_probs=135.2
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+||..||.+.++|+-+.. ...|.+|+.+ ..+|..+.|++|++||+++.+|.--+.-.. .|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---------------~p 144 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---------------RP 144 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---------------Cc
Confidence 4999999999999999985 6789999996 567888999999999999887765553211 12
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++ ||. |+ |-.
T Consensus 145 i~------AfD-------------p~--------------GLi------------------------------------- 154 (311)
T KOG1446|consen 145 IA------AFD-------------PE--------------GLI------------------------------------- 154 (311)
T ss_pred ce------eEC-------------CC--------------CcE-------------------------------------
Confidence 32 443 11 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFR---AHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v~~f~---aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
|+.+...+.|+|||+++. .+..+|. +-...++.|.|||||++|+.+...+. ++
T Consensus 155 ---------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~ 212 (311)
T KOG1446|consen 155 ---------------------FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IY 212 (311)
T ss_pred ---------------------EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EE
Confidence 111223348999999863 5666665 44678999999999999988888775 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.|...| ++.+.+..++....- -.+.+|+|||++|.+|+.||+||||+++++.....+++
T Consensus 213 ~lDAf~G------------~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 213 LLDAFDG------------TVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEEccCC------------cEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9998876 344444444432222 25899999999999999999999999988766666666
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-14 Score=169.00 Aligned_cols=214 Identities=14% Similarity=0.171 Sum_probs=140.6
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|+|||+.+++.+..++. ...|++|+|+ +.+|+ .+.|++|++||+.+++++.++..+...
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v------------- 620 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANI------------- 620 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCe-------------
Confidence 58899999999999998864 6789999996 34555 467899999999999998888653211
Q ss_pred cceee---cCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccc
Q 004015 138 GPLAV---GPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 212 (779)
Q Consensus 138 ~piAl---gpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y 212 (779)
..+++ ...+||.++.+ +.+|+ ....+.... ...++.. .++.
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD-----------------------------~~~~~~~~~--~~~~h~~--~V~~- 666 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYD-----------------------------LRNPKLPLC--TMIGHSK--TVSY- 666 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEE-----------------------------CCCCCccce--EecCCCC--CEEE-
Confidence 11222 12455555322 12221 110000000 0001100 0000
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTA 286 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s------~~~v~~f~aHt~~IsaLaFSPdG~lLATa 286 (779)
+ .... ...++++..||.|+|||+.. ..++..|.+|...+.+++|+|+|.+||+|
T Consensus 667 -----------v--~f~~-------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 667 -----------V--RFVD-------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred -----------E--EEeC-------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 0 0000 11356677899999999974 36788999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---------cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---------rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+.||+ |+||+.....+ ...+.+. -......|.+++|+|++.+|++|+.||+|+||++
T Consensus 727 s~D~~-v~iw~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 727 SETNE-VFVYHKAFPMP------------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred eCCCE-EEEEECCCCCc------------eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99997 89999754300 0011110 0111234999999999999999999999999997
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=160.69 Aligned_cols=179 Identities=15% Similarity=0.258 Sum_probs=131.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+.|.|...+|++.+.+++..+.|.++.|+ +++++++.+++|++||+++..|++.+......++. .+ ++
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt------s~---~~ 395 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT------SL---CI 395 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee------ee---ee
Confidence 44999999999999999999999999995 56778888999999999999999888664211110 00 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
++.++|||
T Consensus 396 S~ng~ylA------------------------------------------------------------------------ 403 (514)
T KOG2055|consen 396 SLNGSYLA------------------------------------------------------------------------ 403 (514)
T ss_pred cCCCceEE------------------------------------------------------------------------
Confidence 22223333
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNI 293 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I 293 (779)
.++..|.|.|||..+ .++++++..-+..|+.|+|+||+++||.||.-. ..+
T Consensus 404 ----------------------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 404 ----------------------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred ----------------------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence 344557788888653 578888889999999999999999999998742 346
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEee-cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
++-.+... ....++. ++..-..|+|++|||.|.|+|.|..+|.+++|.|+.|
T Consensus 462 rLVHvPS~--------------TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 462 RLVHVPSC--------------TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred EEEeccce--------------eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 77666542 0001111 1112234899999999999999999999999999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=157.36 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=81.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l- 321 (779)
++..||+|+|||+.+++.+..+. |...|.+|+|+|+|.+|++++.|++ |+|||++.+ ..+..+
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg--------------~~i~tl~ 206 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQ--------------EIASSFH 206 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCC--------------cEEEEEe
Confidence 45678999999999998887776 6678999999999999999999987 999999875 222333
Q ss_pred -ecCCCccc-EEEEEEcCCCCEEEEEeCCC----eEEEEecCCCCCceee
Q 004015 322 -QRGLTNAV-IQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 -~rG~t~a~-I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~gg~~~~ 365 (779)
+.|..... ++...|++|+++|++++.|+ +|+|||+...+.+...
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 22211112 45567889999999988774 8999999876554443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-14 Score=158.60 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=173.3
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
...+.|||..+.+.++.|- +...|++++|- .+.||| +....+++||..|+.|. .+.+|.....+ +
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS---------L 371 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS---------L 371 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee---------e
Confidence 4678999999999998886 48899999994 367777 45679999999999987 66677542211 0
Q ss_pred cceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhce-----------eeecCCc
Q 004015 138 GPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG-----------IVNLGDL 204 (779)
Q Consensus 138 ~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G-----------l~~lGd~ 204 (779)
. ++-+.-|||..+++ .+.|....-+...+.... .......+..+|. ++--+.. ++.+.+-
T Consensus 372 ~-~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~----~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 372 D-VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ----ANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred e-ecccCcEEEEecCCceEEEEEecCCcchhhhhhh----hcccccccceeee--cccCccEEEEecCCceEEEecCCCc
Confidence 0 11223588888764 566711000000000000 0001111111111 1111111 1111110
Q ss_pred ---c--ccccccccccccCCC-cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC
Q 004015 205 ---G--YKKLSQYCSEFLPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 278 (779)
Q Consensus 205 ---~--~~~ls~y~~~l~p~~-~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP 278 (779)
. +...++|.. ...+. .+.+. .++. ...++++++|.+.+||++...+.+.+|.+|+..|.|+.|+|
T Consensus 445 ~~~~~~~~~~~~~t~-~aHdKdIN~Va-ia~n-------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTE-RAHDKDINCVA-IAPN-------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred ccccccceehhhHHH-HhhcccccceE-ecCC-------CceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 0 000011110 01111 11111 1111 23567889999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..++|||+|.|+| |+||.+.+. .++.+| .|++.+ |+.++|-.+++.|+++++||-++||++++
T Consensus 516 ~dq~laT~SgD~T-vKIW~is~f--------------SClkT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 516 NDQLLATCSGDKT-VKIWSISTF--------------SCLKTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ccceeEeccCCce-EEEEEeccc--------------eeeeee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999999988 999999876 566777 466544 99999999999999999999999999999
Q ss_pred CCCceeeccCCCC
Q 004015 359 LGGSVNFQPTDAN 371 (779)
Q Consensus 359 ~gg~~~~~~H~~~ 371 (779)
..+..++..|.+.
T Consensus 579 ~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 579 NECEMTLDAHNDR 591 (775)
T ss_pred hhhhhhhhhccce
Confidence 9999999999654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-13 Score=160.67 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=140.4
Q ss_pred CCEEEEEECCCC--------cEEEEEeCCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQ--------SYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tg--------e~V~tLkf~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
.++|+|||+.+. ..+..+.....|.+++|+ +.+|++ +.+++|++||+.+.+.+..+..|...
T Consensus 504 D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~------ 577 (793)
T PLN00181 504 NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR------ 577 (793)
T ss_pred CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC------
Confidence 378999998542 123445556789999995 345554 78999999999999998888776431
Q ss_pred CCccccccceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 131 GGIGIGYGPLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 131 ~~~~~~~~piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
...+++.+ .+|+.++.+ +.+|+. ...+.+. .+....
T Consensus 578 ------V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~-----------------------------~~~~~~~----~~~~~~ 618 (793)
T PLN00181 578 ------VWSIDYSSADPTLLASGSDDGSVKLWSI-----------------------------NQGVSIG----TIKTKA 618 (793)
T ss_pred ------EEEEEEcCCCCCEEEEEcCCCEEEEEEC-----------------------------CCCcEEE----EEecCC
Confidence 12233332 345554322 222211 1100000 000000
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcCCCCEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLV 284 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-~v~~f~aHt~~IsaLaFSPdG~lLA 284 (779)
.+ ++.... .+ .| ..++.+..+|.|++||+++.+ ++..+.+|...|++++|. ++.+|+
T Consensus 619 --~v--~~v~~~----------~~----~g---~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 619 --NI--CCVQFP----------SE----SG---RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred --Ce--EEEEEe----------CC----CC---CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE
Confidence 00 000000 00 01 135667889999999998765 678889999999999997 788999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|++.||+ |+|||+.....+. ....+..+ .|+. ..+.+++|+|++++||+|+.|++|+||+....
T Consensus 677 s~s~D~~-ikiWd~~~~~~~~--------~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSSTDNT-LKLWDLSMSISGI--------NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEECCCE-EEEEeCCCCcccc--------CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999997 9999997531100 01223344 3443 45889999999999999999999999998654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=159.19 Aligned_cols=182 Identities=15% Similarity=0.218 Sum_probs=147.2
Q ss_pred CCEEEEEECCCCcEEEE-EeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHM-LKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~t-Lkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..++++||..++..+.+ +.. ...|.++++. +.+++ .+.|.++++||..+++|.+++.+|.....
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~----------- 295 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR----------- 295 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE-----------
Confidence 47789999999999888 764 6889999996 55555 47799999999999999999988743100
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+.+ . .
T Consensus 296 -~~~~-------~------------------------------~------------------------------------ 301 (537)
T KOG0274|consen 296 -CLTI-------D------------------------------P------------------------------------ 301 (537)
T ss_pred -EEEc-------c------------------------------C------------------------------------
Confidence 0100 0 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
..+.++..|.+|+|||+.+++++.++.+|+.+|.+|.++ +.+|++|+.||+ |+|||
T Consensus 302 ---------------------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~-v~VW~ 357 (537)
T KOG0274|consen 302 ---------------------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT-VKVWD 357 (537)
T ss_pred ---------------------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce-EEEEE
Confidence 011223467899999999999999999999999999999 889999999996 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CCceeeccCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTDA 370 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~-gg~~~~~~H~~ 370 (779)
+.++ ..++.+ +|++ ..|+++.|... .++.+|+.|++|++||+... .+..++..|..
T Consensus 358 ~~~~--------------~cl~sl-~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 358 PRTG--------------KCLKSL-SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred hhhc--------------eeeeee-cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 9875 667777 5654 56999988876 89999999999999999998 88888888853
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=149.48 Aligned_cols=191 Identities=14% Similarity=0.210 Sum_probs=144.2
Q ss_pred CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~---rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..++++|||+.||++..+|. +.+.|+.|+++. .++.++.|++|+|||+...+.++..-+|-.
T Consensus 171 ~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-------------- 236 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-------------- 236 (460)
T ss_pred CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------
Confidence 35899999999999999998 689999999974 356678899999999998776554433310
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.. .|+.- |
T Consensus 237 ~V~-----~L~lh-------------P----------------------------------------------------- 245 (460)
T KOG0285|consen 237 GVY-----CLDLH-------------P----------------------------------------------------- 245 (460)
T ss_pred eeE-----EEecc-------------c-----------------------------------------------------
Confidence 000 01100 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.- ..++++..|.+++|||++++..+..|.+|+.+|..+.|.|-.-.++|||.|++ |++||
T Consensus 246 -Tl------------------dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWD 305 (460)
T KOG0285|consen 246 -TL------------------DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWD 305 (460)
T ss_pred -cc------------------eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEee
Confidence 00 01234456789999999999999999999999999999997777999999998 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCc
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT 374 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~ 374 (779)
+..+ +.+.++. ++...|.+++..|+-..||+++.|. |+-|++-.+.-..++.+|...+..
T Consensus 306 l~ag--------------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 306 LRAG--------------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred eccC--------------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeee
Confidence 9876 2233331 1222389999999999999998885 888999887777778888766553
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=154.73 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=96.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..||+|+|||..++-|+.+|..|++.|++++|+..|+.|+++|-||+ |+.||+... +...+
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRY--------------rNfRT 429 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRY--------------RNFRT 429 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeeccc--------------ceeee
Confidence 456788999999999999999999999999999999999999999999998 899998764 22222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC-eEEEEecCCCCCceeeccCCCCCCc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPLGGSVNFQPTDANFTT 374 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~~~gg~~~~~~H~~~~~~ 374 (779)
+ ..-.+....|++-.|.|..+.+|+.|. .|+||++.++.-.-.+.+|...+..
T Consensus 430 f-t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 430 F-TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred e-cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 2 111122245777777799999999987 5999999998777788999877664
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=140.58 Aligned_cols=116 Identities=14% Similarity=0.203 Sum_probs=100.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+++.||++++||+.+++....|.+|+..|.+++||+|.+.++|||.|.+ |++|++... +.|+.
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT-iklwnt~g~---------------ck~t~ 142 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT-IKLWNTLGV---------------CKYTI 142 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce-eeeeeeccc---------------EEEEE
Confidence 35678999999999999999999999999999999999999999999987 999998753 56777
Q ss_pred ecCCCcccEEEEEEcCC--CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 322 QRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpD--g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
.++.....|.+++|+|. .-+|+++|.|+||+|||+....-...+-+|+....
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 77654456999999998 78999999999999999998877777777754433
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-15 Score=156.24 Aligned_cols=214 Identities=17% Similarity=0.234 Sum_probs=146.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.+||+|||..+-++++.|.. .+.|..+.+.+++|+. +.|.+|.|||..|++++.++..|... .+
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------------VL 281 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------------VL 281 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce--------------eE
Confidence 58999999999999998875 6889999998887665 67889999999999999998876321 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.|.++..-.+. .+....++.|-+.+...++--....|+...
T Consensus 282 -----hlrf~ng~mvt--------------------cSkDrsiaVWdm~sps~it~rrVLvGHrAa-------------- 322 (499)
T KOG0281|consen 282 -----HLRFSNGYMVT--------------------CSKDRSIAVWDMASPTDITLRRVLVGHRAA-------------- 322 (499)
T ss_pred -----EEEEeCCEEEE--------------------ecCCceeEEEeccCchHHHHHHHHhhhhhh--------------
Confidence 11121100000 112233333333322211100011122210
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
+..+--+ ...+++++.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++||.|.+ |++||+..
T Consensus 323 ---VNvVdfd-------~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~ 389 (499)
T KOG0281|consen 323 ---VNVVDFD-------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC 389 (499)
T ss_pred ---eeeeccc-------cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccc
Confidence 0000001 124567788999999999999999999999999999986 5899999999976 99999987
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+ .+|..| .|+.. -|.+|-|. .+.+++|..||+|+|||+...-
T Consensus 390 G--------------~cLRvL-eGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 390 G--------------ACLRVL-EGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred c--------------HHHHHH-hchHH-hhhheeec--CceeeeccccceEEEEeccccc
Confidence 6 233333 35321 28899995 6789999999999999997753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-13 Score=151.57 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=86.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..||.|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||++.+ ..+..+
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg--------------~~v~tl 206 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDG--------------TIVSSV 206 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCC--------------cEEEEE
Confidence 45567899999999999999999999999999999999999999999997 899999875 234444
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEe----CCCeEEEEecCCCCCce
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPLGGSV 363 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS----~DGTVhIwdl~~~gg~~ 363 (779)
. ++....+..+.|.+++..|++++ .|++|+|||+.......
T Consensus 207 ~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 207 E-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred e-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 2 33334466788999988877654 48999999998765443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=160.09 Aligned_cols=224 Identities=15% Similarity=0.266 Sum_probs=156.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||-+=|.+++.+. +.++|+.|+|. .-+++. +.|.+|+||+..+.+|+++|.+|-.-.. .
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVR------------t 98 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVR------------T 98 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeE------------E
Confidence 569999999999999875 58999999995 334444 6778999999999999999998843111 1
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.+-. -|+-.++ +..++..|-+.+-+.++ ...|+..|. .|....
T Consensus 99 ~~FHheyPWIlSAS---------------------------DDQTIrIWNwqsr~~ia---vltGHnHYV----McAqFh 144 (1202)
T KOG0292|consen 99 VFFHHEYPWILSAS---------------------------DDQTIRIWNWQSRKCIA---VLTGHNHYV----MCAQFH 144 (1202)
T ss_pred eeccCCCceEEEcc---------------------------CCCeEEEEeccCCceEE---EEecCceEE----EeeccC
Confidence 11111 2444443 34444444444444333 123444332 122212
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----------------------------cEE-EEeccCC
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----------------------------NVI-AQFRAHK 268 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----------------------------~~v-~~f~aHt 268 (779)
|.. ..+++++-|-+|+|||+..- .++ ..+.+|.
T Consensus 145 ptE------------------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 145 PTE------------------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred Ccc------------------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 211 13456677889999998531 123 3467999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
-.|+-.+|.|.--++++|++|. .|++|+.... ..+.+-+ .||+.+ .|.++-|.|.-..|.+.|.|
T Consensus 207 RGVNwaAfhpTlpliVSG~DDR-qVKlWrmnet------------KaWEvDt-crgH~n-nVssvlfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDR-QVKLWRMNET------------KAWEVDT-CRGHYN-NVSSVLFHPHQDLILSNSED 271 (1202)
T ss_pred cccceEEecCCcceEEecCCcc-eeeEEEeccc------------cceeehh-hhcccC-CcceEEecCccceeEecCCC
Confidence 9999999999999999999996 5999998754 2344333 378764 59999999999999999999
Q ss_pred CeEEEEecCCCCCceeec
Q 004015 349 GTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~ 366 (779)
++|+|||+....+..+|+
T Consensus 272 ksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 272 KSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ccEEEEecccccceeeee
Confidence 999999999988777773
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-14 Score=143.04 Aligned_cols=134 Identities=22% Similarity=0.400 Sum_probs=110.1
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..++||+||.+||..+++|.|+++|.++..+ +++|.++....|..||+.++..++...- | | +
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P--~----------n- 226 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---P--C----------N- 226 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC---c--c----------c-
Confidence 3589999999999999999999999999995 8999999999999999999998776642 1 1 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ +.+ .++|.
T Consensus 227 V-------~SA----------SL~P~------------------------------------------------------ 235 (334)
T KOG0278|consen 227 V-------ESA----------SLHPK------------------------------------------------------ 235 (334)
T ss_pred c-------ccc----------cccCC------------------------------------------------------
Confidence 0 000 01111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
...++.+..++.++.||+.++..+-.+ ++|-+||-||+|+|||.+.|+||.||+ |+||..
T Consensus 236 ------------------k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt 296 (334)
T KOG0278|consen 236 ------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQT 296 (334)
T ss_pred ------------------CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEe
Confidence 012345678899999999999988886 899999999999999999999999998 899998
Q ss_pred CCC
Q 004015 299 IPG 301 (779)
Q Consensus 299 ~~~ 301 (779)
.++
T Consensus 297 ~~~ 299 (334)
T KOG0278|consen 297 TPG 299 (334)
T ss_pred cCC
Confidence 875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=149.15 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=126.3
Q ss_pred CCEEEEEECCCCc-------EEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQS-------YVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tge-------~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
.++|+|||+.++. .+.+|. +...|..|+|+ ..+|++ +.|++|+|||+.+++.+..+..|...
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~------ 170 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ------ 170 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc------
Confidence 4889999998763 455665 36789999996 246655 77999999999999988888665321
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
+ ..|++.. +|.
T Consensus 171 ---------V----~sla~sp---------------------------dG~----------------------------- 181 (493)
T PTZ00421 171 ---------I----TSLEWNL---------------------------DGS----------------------------- 181 (493)
T ss_pred ---------e----EEEEEEC---------------------------CCC-----------------------------
Confidence 1 0122220 111
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEcCCCCEEEEEe--
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTAS-- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~-IsaLaFSPdG~lLATaS-- 287 (779)
.++++..||.|+|||+++++.+.++.+|.+. +..+.|.+++.+|++++
T Consensus 182 -----------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s 232 (493)
T PTZ00421 182 -----------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232 (493)
T ss_pred -----------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence 1234467899999999999999999999876 45688999988887765
Q ss_pred --CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 288 --VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 288 --~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
.|++ |+|||++... .......+ .....+....|++|+++|++++ .|++|++|++....
T Consensus 233 ~s~Dr~-VklWDlr~~~-----------~p~~~~~~---d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 233 KSQQRQ-IMLWDTRKMA-----------SPYSTVDL---DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCCCe-EEEEeCCCCC-----------CceeEecc---CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 3565 9999997530 00111111 1222366778999999999988 49999999998754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=141.28 Aligned_cols=223 Identities=13% Similarity=0.168 Sum_probs=147.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++||+|+...|.++++... ...|.+++.+ .++-+.+.|+.|++||+.|++.++.+.+|-. ..|
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a------------qVN 105 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA------------QVN 105 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc------------eee
Confidence 48999999999999999986 5689998884 5566668899999999999999999999832 233
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+.+.- .-++.++ ..+.+.. +++-. ..++.+. .+ +.
T Consensus 106 tV~fNeesSVv~Sgs---------------------------fD~s~r~--wDCRS-----------~s~ePiQ-il-de 143 (307)
T KOG0316|consen 106 TVRFNEESSVVASGS---------------------------FDSSVRL--WDCRS-----------RSFEPIQ-IL-DE 143 (307)
T ss_pred EEEecCcceEEEecc---------------------------ccceeEE--EEccc-----------CCCCccc-hh-hh
Confidence 343211 1122221 1111110 11000 0000000 00 00
Q ss_pred cCCCcCccccccCCCCCCCccCC-cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNG-HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g-~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
..++..++. ++. .++.++.||+++.||++.+.......+| ||+|++|++||..++.++-|++ +++
T Consensus 144 a~D~V~Si~-----------v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~st-lrL 209 (307)
T KOG0316|consen 144 AKDGVSSID-----------VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDST-LRL 209 (307)
T ss_pred hcCceeEEE-----------ecccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccce-eee
Confidence 011111111 111 3456678999999999999887766665 9999999999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.|-.++ +.| .-..|+.+.. =.++||+....++++||.||.|.+||+........+.-|
T Consensus 210 lDk~tG--------------klL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 210 LDKETG--------------KLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred cccchh--------------HHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 998776 222 2224444332 358899999999999999999999999887665555544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=138.61 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=145.2
Q ss_pred CCEEEEEECCCCcEEEEEeC---CCCEEEEEEc---C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS---S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s---~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
..+|++|++.-+..++.+.. ...|-.++|. . .+.+++.+++|++||+++.++...+.+..
T Consensus 41 dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~------------- 107 (313)
T KOG1407|consen 41 DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG------------- 107 (313)
T ss_pred CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------
Confidence 47899999998877776654 3578888894 3 44555789999999999999998886531
Q ss_pred cccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
...-++.+| .++|+..++-. +.. .+..+. ..+...-++...
T Consensus 108 eni~i~wsp~g~~~~~~~kdD~---------------------------it~--id~r~~-----~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNKDDR---------------------------ITF--IDARTY-----KIVNEEQFKFEV--- 150 (313)
T ss_pred cceEEEEcCCCCEEEEecCccc---------------------------EEE--EEeccc-----ceeehhccccee---
Confidence 001123333 45555433200 000 000000 000000000000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.+.. ..++ +..|.-+...|+|.|-...+-+++.+++||....-||+|+|+|++||+||.|. .+
T Consensus 151 ne~~--------w~~~--------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-lv 213 (313)
T KOG1407|consen 151 NEIS--------WNNS--------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-LV 213 (313)
T ss_pred eeee--------ecCC--------CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-ee
Confidence 0000 0000 11234456679999999999999999999999999999999999999999996 58
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
-+||+..- .++..+.|-. -+|..|+||.||++||++|.|..|-|=.+.++...-.+.
T Consensus 214 SLWD~~EL--------------iC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 214 SLWDVDEL--------------ICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred eccChhHh--------------hhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 99999763 3333343432 359999999999999999999999998888765544443
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=158.43 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=140.1
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
...++++||+.+|+|+++|.. .+.|+.+..-+.+++. +.|.+|++||+.++.++.++..|..+. +.
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V------------~~ 336 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV------------NC 336 (537)
T ss_pred cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccE------------EE
Confidence 368999999999999999995 6778877776555444 699999999999999999997652211 01
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. +. +
T Consensus 337 v~-------~~-----------------------------~--------------------------------------- 341 (537)
T KOG0274|consen 337 VQ-------LD-----------------------------E--------------------------------------- 341 (537)
T ss_pred EE-------ec-----------------------------C---------------------------------------
Confidence 10 10 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..+.+++.||+|+|||+.++++++++++|+..|.+|.|+.. .++.+||.|++ |++||+.
T Consensus 342 -------------------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~ 400 (537)
T KOG0274|consen 342 -------------------PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLR 400 (537)
T ss_pred -------------------CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCC
Confidence 01234567899999999999999999999999999999887 89999999977 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.. ..+++.| .+++ +.+.++.+ .+++|.+++.|++|++||++.++....+.+
T Consensus 401 ~~-------------~~c~~tl-~~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 401 TK-------------RKCIHTL-QGHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ch-------------hhhhhhh-cCCc-cccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 63 0233444 2322 33555544 578999999999999999999998888877
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=138.61 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=81.9
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC---------CCCCCccC
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---------LGTSSACD 310 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~---------~g~~s~~~ 310 (779)
++.+..+|.|.+||++++ +.+..-+-|...|+.|+|+||.++++|+|.|.+ -++||+.+.. +-+..+..
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecccccceecc
Confidence 456678999999999997 566677899999999999999999999999977 7999987531 10111000
Q ss_pred C---------CCceeE-----------------------EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 311 A---------GTSYVH-----------------------LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 311 ~---------~~s~~~-----------------------l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ .....- +-++ .|+ -.+|.++||+|||+-.++|+.||.|+|.....
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 000000 0011 122 24599999999999999999999999865543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-13 Score=146.74 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=90.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..|+.|.+|+=.-.+--.+++.|..-|.|+.|||||.++||++.||+ |.|||-.++ ..++.|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktg--------------e~vg~l 228 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTG--------------EKVGEL 228 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCc--------------cEEEEe
Confidence 45677889999987777777888999999999999999999999999998 899998776 455666
Q ss_pred ecC-CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG-~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.-. .+...|+.|+||||++.|+++|.|.|++|||++......+|
T Consensus 229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 421 11234999999999999999999999999999988655555
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=148.87 Aligned_cols=222 Identities=15% Similarity=0.214 Sum_probs=153.1
Q ss_pred CCEEEEEECCCCc--EEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge--~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...|++|+.-.++ .+.+|.. .++|.++.|. ...||.+.++..++|++..++...||.+|.....+. .
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a-------k 268 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA-------K 268 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee-------h
Confidence 4779999987766 5666655 5789999994 567888999999999999999999999986532210 0
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+-.+- +..++ +++..++ .++|+.. .||...
T Consensus 269 ---~~~~~-------------------------~~vVs--gs~DRti----------------K~WDl~k----~~C~kt 298 (459)
T KOG0288|consen 269 ---FKLSH-------------------------SRVVS--GSADRTI----------------KLWDLQK----AYCSKT 298 (459)
T ss_pred ---hhccc-------------------------cceee--ccccchh----------------hhhhhhh----hheecc
Confidence 00000 00000 1122222 1223221 233321
Q ss_pred -cCCCcCccccccCCCCCCCccC--CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 217 -LPDSQNSLQSAIPGGKSNGTVN--GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 217 -~p~~~~si~sa~~~~~~~g~v~--g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+|.. ..+-++. ..++++..|++|+.||+++..++.....|. .|++|..+++|.-|.+++.|.+ +
T Consensus 299 ~l~~S-----------~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l 365 (459)
T KOG0288|consen 299 VLPGS-----------QCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-L 365 (459)
T ss_pred ccccc-----------cccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-e
Confidence 1111 1111111 145677889999999999999999998886 9999999999999999999976 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+++|+++. ...+.|+-..-.+.+.+..++||||+.|+|+||.||.|+||++.+......+.
T Consensus 366 ~viDlRt~------------eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 366 KVIDLRTK------------EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred eeeecccc------------cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 99999875 34555554322233458899999999999999999999999998876665554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=133.76 Aligned_cols=236 Identities=15% Similarity=0.214 Sum_probs=144.5
Q ss_pred EEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeCCCcee-cCCCccCCcccccc
Q 004015 95 VVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVV-SNDGRVNPQHLMQS 170 (779)
Q Consensus 95 lLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~-~~sgrvspq~ls~s 170 (779)
+|| .++|.+|++|.+.|+.|.+++.- +. -..|.+.+.| +.||.++++-++ .+...-+|. |-
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh-~d-----------sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~---Pv 76 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQH-PD-----------SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN---PV 76 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEec-Cc-----------cceeeEEEcCCcchhhhccCCeeEEEEccCCCCC---ce
Confidence 344 37899999999999999999953 21 1346666666 899999876432 221111111 00
Q ss_pred cccccccCCCcceeeeeccc-ccchhceeeecCCccccccc----cccccccCCCcCccccccCCCCCCCccCCcccccC
Q 004015 171 RSFSGFASNGSRVAHYAKES-SKHLAAGIVNLGDLGYKKLS----QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDAD 245 (779)
Q Consensus 171 ~~~s~~~s~g~~va~~A~~~-sK~La~Gl~~lGd~~~~~ls----~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~ 245 (779)
..|. ...+.|..++... +|- ++.-||.|.-++- ..|...+... ..+.......+ -+.+++++
T Consensus 77 ~t~e---~h~kNVtaVgF~~dgrW----MyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn-----QteLis~d 143 (311)
T KOG0315|consen 77 ATFE---GHTKNVTAVGFQCDGRW----MYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN-----QTELISGD 143 (311)
T ss_pred eEEe---ccCCceEEEEEeecCeE----EEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC-----cceEEeec
Confidence 0111 1223344444332 121 1222333322221 1111111000 00001101111 23677889
Q ss_pred CCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
++|.|+|||+....+...+. .-..+|.+|...|||++|+.+-..|+ ..+|++..+..-+ ....+.+++-
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s--------~l~P~~k~~a- 213 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTAS--------ELEPVHKFQA- 213 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccc--------cceEhhheec-
Confidence 99999999999987766654 44579999999999999999999998 7999998752111 2233333321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC-CCceeeccCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTD 369 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~-gg~~~~~~H~ 369 (779)
+...|..+-||||++|||++|+|.|++||++..+ .....+++|.
T Consensus 214 -h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 214 -HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred -ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 1234899999999999999999999999999987 6666777874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-12 Score=144.56 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=152.0
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEec-CCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t-~p~~~~~p~s~~~~~~~~ 138 (779)
+.|.+|+..+++......| ...|.+|.++ +.+||| ..++.|.|||..+.+.+.++.. |... ++
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r------------vg 264 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASR------------VG 264 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCce------------eE
Confidence 6799999999997777778 7899999996 788888 5678999999999998888876 4221 22
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+|....-|..+ +....+.++.....+++.. +..++.. .+... ...+
T Consensus 265 ~laW~~~~lssG---------------------------sr~~~I~~~dvR~~~~~~~--~~~~H~q--eVCgL--kws~ 311 (484)
T KOG0305|consen 265 SLAWNSSVLSSG---------------------------SRDGKILNHDVRISQHVVS--TLQGHRQ--EVCGL--KWSP 311 (484)
T ss_pred EEeccCceEEEe---------------------------cCCCcEEEEEEecchhhhh--hhhcccc--eeeee--EECC
Confidence 233221111111 1222333444443333321 0111110 00000 0001
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEe--CCCCEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTAS--VQGHNINI 295 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS--~DGt~I~V 295 (779)
+ ...++++..|+.|.|||.....++.+|..|+.+|-+|+|+| ...+||||+ .|++ |++
T Consensus 312 d------------------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~f 372 (484)
T KOG0305|consen 312 D------------------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKF 372 (484)
T ss_pred C------------------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEE
Confidence 1 12467788999999999999999999999999999999999 577999974 4765 999
Q ss_pred EeCCCCCC------CCC--------------CccCCCCceeEEEEe--------ecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 296 FKIIPGIL------GTS--------------SACDAGTSYVHLYRL--------QRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 296 wdi~~~~~------g~~--------------s~~~~~~s~~~l~~l--------~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
|++.++.. ++. +.-+-......+|++ ..|+ ..+|..+++||||..|++|+.
T Consensus 373 wn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecc
Confidence 99987632 110 000111112233433 1233 356999999999999999999
Q ss_pred CCeEEEEecCCC
Q 004015 348 RGTSHLFAINPL 359 (779)
Q Consensus 348 DGTVhIwdl~~~ 359 (779)
|.|+++|++-+.
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999775
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=139.93 Aligned_cols=192 Identities=17% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCEEEEEECCC-CcEEEEEe-CCCCEEEEEEc---Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~T-ge~V~tLk-f~s~V~sV~~s---~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++++|||+.- ...++.+| ++..|++|.+| ++ +|..+.|++|++||..-.+-+.|+.+|.++
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~------------ 149 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC------------ 149 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE------------
Confidence 47899999632 34555554 47899999996 33 455589999999999988888888776321
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.|.. .++| ..
T Consensus 150 -----------Iy~a--------------------~~sp--~~------------------------------------- 159 (311)
T KOG0277|consen 150 -----------IYQA--------------------AFSP--HI------------------------------------- 159 (311)
T ss_pred -----------EEEE--------------------ecCC--CC-------------------------------------
Confidence 1210 0000 00
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~V 295 (779)
...|++++.||.+++||++....-..|++|...|.|+.|+. +-.+||||+.|+. |++
T Consensus 160 ---------------------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~ 217 (311)
T KOG0277|consen 160 ---------------------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRG 217 (311)
T ss_pred ---------------------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEE
Confidence 01245567889999999986544444999999999999998 6779999999986 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
||++.- -.++..| .|+.-| |..|.|||- ...||++|.|.|++||+.........-..|...+.
T Consensus 218 wDir~~-------------r~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv 281 (311)
T KOG0277|consen 218 WDIRNL-------------RTPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV 281 (311)
T ss_pred Eehhhc-------------cccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEE
Confidence 999874 1345666 454433 999999995 55799999999999999986554443333444443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-13 Score=144.10 Aligned_cols=133 Identities=13% Similarity=0.249 Sum_probs=101.9
Q ss_pred cccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~--s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.|.+...++.+.|||++ +.++....++|+.+|.|++|+| ++.+|||||.|++ |.+||++.- ..
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL-------------~~ 307 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL-------------NK 307 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc-------------cc
Confidence 45566789999999999 5667778889999999999999 6779999999998 899999874 23
Q ss_pred EEEEeecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCc--c-CCCcCCcceecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT--K-HGAMAKSGVRWPP 388 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~--~-~~~~~~~~~r~~~ 388 (779)
.++++. |+ ...|..|.|||. ...||+++.|+.++|||+..-++..+..--.+.+++ | ||+....+.-+++
T Consensus 308 ~lh~~e-~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 PLHTFE-GH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred Cceecc-CC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 456663 33 345999999995 557899999999999999998888764433444444 2 3665555444433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=149.71 Aligned_cols=189 Identities=17% Similarity=0.274 Sum_probs=143.5
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL-kf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.||+..+.+.++++ +|+..|+++.|. ++++|++ ..+.|.|||..+...+.++..|..+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap--------------- 112 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP--------------- 112 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCc---------------
Confidence 67999999999998876 699999999995 8999886 4679999997775555555444211
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+- ..-|. |+ +
T Consensus 113 v~----~~~f~-------------~~--------------d--------------------------------------- 122 (487)
T KOG0310|consen 113 VH----VTKFS-------------PQ--------------D--------------------------------------- 122 (487)
T ss_pred ee----EEEec-------------cc--------------C---------------------------------------
Confidence 10 00110 10 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi 298 (779)
+..+.+++.++.+++||+.+..++..+.+|+..|.|.+|+|- +.+++|||-||+ |++||+
T Consensus 123 ------------------~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-vrl~Dt 183 (487)
T KOG0310|consen 123 ------------------NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-VRLWDT 183 (487)
T ss_pred ------------------CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce-EEEEEe
Confidence 113445677889999999999887899999999999999995 669999999998 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc-CCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP-TDANFT 373 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~-H~~~~~ 373 (779)
+.. + ..++++.-| ++|-+++|=|.|..||+++. ..|+|||+..++...+... |...++
T Consensus 184 R~~------------~-~~v~elnhg---~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 184 RSL------------T-SRVVELNHG---CPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred ccC------------C-ceeEEecCC---CceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEE
Confidence 874 1 345666544 56999999999999988864 4799999998877776655 755444
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-14 Score=146.91 Aligned_cols=109 Identities=23% Similarity=0.407 Sum_probs=96.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..||.|+||.+.++.|+..|. +|+..|+||.||.|+..++++|.|-+ ++|.-+..+ ..+..
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSG--------------K~LKE 343 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSG--------------KCLKE 343 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccc--------------hhHHH
Confidence 456789999999999999999998 99999999999999999999999966 899888765 45555
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
+ ||++ .-|..+.|++||.+++++|+||||+||+..+..+..+|+.
T Consensus 344 f-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 344 F-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred h-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 5 7765 4599999999999999999999999999999988888864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=145.79 Aligned_cols=181 Identities=17% Similarity=0.237 Sum_probs=131.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.|+|||+++...+.+++- ..+|..+.|+ ..+++.+ .+..+++||+.+......+.+|..-.-|
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~----------- 158 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC----------- 158 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe-----------
Confidence 4599999988777777764 6899999996 4455554 5567899999998875567666431111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.++. |. ++.
T Consensus 159 --------g~~~-------------~~-------------~~h------------------------------------- 167 (487)
T KOG0310|consen 159 --------GDIS-------------PA-------------NDH------------------------------------- 167 (487)
T ss_pred --------eccc-------------cC-------------CCe-------------------------------------
Confidence 0110 00 000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
-++++++||.|++||+++. ..+..| .|..||..+.|=|+|.++|||+ |..|+|||
T Consensus 168 ---------------------ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWD 223 (487)
T KOG0310|consen 168 ---------------------IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWD 223 (487)
T ss_pred ---------------------EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEE
Confidence 1346789999999999987 555555 6889999999999999999988 56799999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+..+ .+.++.+ ..+...|+|+++..|++.|.+++.|+.|+||++..+.-.-.+
T Consensus 224 l~~G-------------~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 224 LTTG-------------GQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred ecCC-------------ceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9876 1333332 223345999999999999999999999999999887544333
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-12 Score=148.17 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=90.5
Q ss_pred cccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 242 PDADNVGMVIVRDIVSK--------NVIAQFRAHKSPISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~--------~~v~~f~aHt~~IsaLaFSPdG~l-LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
++++.||.|+|||+.++ .++..+.+|...|.+|+|+|++.. ||||+.||+ |+|||+..+
T Consensus 91 ASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt-IrIWDl~tg----------- 158 (568)
T PTZ00420 91 ASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF-VNIWDIENE----------- 158 (568)
T ss_pred EEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe-EEEEECCCC-----------
Confidence 34567899999999764 245678899999999999999975 579999987 899999875
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..++.+.. ...|.+++|+|||++|++++.|++|+|||+........+.+|...
T Consensus 159 ---~~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 159 ---KRAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred ---cEEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 23334421 235999999999999999999999999999987666677888643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=157.70 Aligned_cols=117 Identities=13% Similarity=0.259 Sum_probs=103.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|++++.|++.++|......+++.|.+|-+.|.|++|.|+..|+||||.|.+ +++||+.++ ..+.++
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G------------~~VRiF 573 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTG------------NSVRIF 573 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCC------------cEEEEe
Confidence 4788899999999999999999999999999999999999999999999977 899999987 223333
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+|++ +.|.+++|||+|+|||+|+.||.|+|||+........+.+|++.+.
T Consensus 574 ---~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 574 ---TGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred ---cCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 6743 5699999999999999999999999999998877788899976554
|
|
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=155.64 Aligned_cols=270 Identities=24% Similarity=0.362 Sum_probs=170.0
Q ss_pred EEECCCCcEEEEEeCCCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCc
Q 004015 68 FYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPR 145 (779)
Q Consensus 68 IWDL~Tge~V~tLkf~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpR 145 (779)
|=++++...++.+++ +|..++| ++.+|+++.-..+.|++++.++.+.++..+ +.+ +..+|+++.++
T Consensus 302 f~S~a~i~QfkAhks--piSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~---~qs-------~~~s~ra~t~a 369 (788)
T KOG2109|consen 302 FDSFADIRQFKAHKS--PISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVS---DQS-------LVVSPRANTAA 369 (788)
T ss_pred ccchhhhhheeeecC--cccccccccCceEEEEEeeccceeeeEEecccccccccc---ccc-------cccchhcchHH
Confidence 334444444555544 5555555 678888888888888888888877666543 122 34567888888
Q ss_pred eeEeeCCCce---ecCCC-ccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc----cccccccc
Q 004015 146 WLAYSGSPVV---VSNDG-RVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL----SQYCSEFL 217 (779)
Q Consensus 146 wLAyas~~~i---~~~sg-rvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l----s~y~~~l~ 217 (779)
||++..-... +...+ +-.+-.+.++ -.+. +.+++.|-.|+.-.|......+ ..|+....
T Consensus 370 viqdicfs~~s~~r~~gsc~Ge~P~ls~t----------~~lp---~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~ 436 (788)
T KOG2109|consen 370 VIQDICFSEVSTIRTAGSCEGEPPALSLT----------CQLP---AYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSY 436 (788)
T ss_pred HHHHHhhhhhcceEeecccCCCCcccccc----------cccc---hhhchhhhccccccCcccceeeeecccccccccc
Confidence 8888653321 11000 0000011110 0000 0111222223322222221111 11221111
Q ss_pred CCCcCccc--cccCCCCCCCccCCcccccCCCCeEEEEECC-----CC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 218 PDSQNSLQ--SAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-----SK-NVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 218 p~~~~si~--sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-----s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
- .++.. +..++.+..|.+.+..+.++. |.+.+.++. ++ -+++++-+|..++..+.|+++++++.+++..
T Consensus 437 ~--asSv~s~s~~pd~ks~gv~~gsv~k~~q-~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~ 513 (788)
T KOG2109|consen 437 T--ASSVFSRSVKPDSKSVGVGSGSVTKANQ-GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADAN 513 (788)
T ss_pred c--cceeeccccccchhhccceeeeccccCc-cchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceeccccc
Confidence 0 01111 223445555555444444333 555444432 23 5778899999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
++.+++|.+++...|++.+ .+.|+|+++||.|.++|..++|+-|++|+|.....+|.|||.+++|++....++|+
T Consensus 514 e~ef~~f~V~Ph~~wssla-----av~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 514 ENEFNIFLVMPHATWSSLA-----AVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred ccccceEEeecccccHHHh-----hhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCceeeeeeccccccccceecC
Confidence 9988999999986666543 46899999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 004015 370 A 370 (779)
Q Consensus 370 ~ 370 (779)
+
T Consensus 589 ~ 589 (788)
T KOG2109|consen 589 D 589 (788)
T ss_pred C
Confidence 6
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=129.10 Aligned_cols=176 Identities=19% Similarity=0.277 Sum_probs=132.9
Q ss_pred CEEEEEECCCC---cEEEEEe--CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCC--CCcEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQ---SYVHMLK--FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tg---e~V~tLk--f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~--T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++||||++.++ .+...|. ++-.|++|+++ +++||+ ++|.++.||--. +++|+.+|++|.+..-|
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~------ 110 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKC------ 110 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeE------
Confidence 78999999853 3333332 46789999995 788887 799999999876 67899999998764322
Q ss_pred cccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 134 ~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
+ |++. +|.++|
T Consensus 111 ------V-------aws~---------------------------sG~~LA----------------------------- 121 (312)
T KOG0645|consen 111 ------V-------AWSA---------------------------SGNYLA----------------------------- 121 (312)
T ss_pred ------E-------EEcC---------------------------CCCEEE-----------------------------
Confidence 2 2321 222221
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC---CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s---~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
+.+-|..|-||.+.. ..+++.++.|+..|--+.|.|.-.+|+++|-|.
T Consensus 122 -----------------------------TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 122 -----------------------------TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred -----------------------------EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 123355688888874 368899999999999999999999999999997
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+ |++|+-.+. ..-.+..+|. |++. .|++++|.+.|..|++++.|+|++||.+-
T Consensus 173 T-Ik~~~~~~d-----------ddW~c~~tl~-g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 173 T-IKVYRDEDD-----------DDWECVQTLD-GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred e-EEEEeecCC-----------CCeeEEEEec-Cccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 6 999987642 1234555663 4433 59999999999999999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=140.28 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=89.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..|+.|+.||+...+.++++.+|-+.|.||+..|.-..|+||+.|.+ ++|||+++- ..+..| .
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst-~RvWDiRtr--------------~~V~~l-~ 274 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST-IRVWDIRTR--------------ASVHVL-S 274 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce-EEEeeeccc--------------ceEEEe-c
Confidence 356789999999999999999999999999999999999999999987 899999974 223344 4
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|++. .|.++.|-|-.-.+.+||.|+||++||+..+.-..++.-|
T Consensus 275 GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 275 GHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred CCCC-cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 5543 4889999887777899999999999999876555555444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=130.32 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=100.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC-----------CCc-
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT-----------SSA- 308 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~-----------~s~- 308 (779)
|++...|..|.+||+.+++++..|++|...|++++|+.+...+++||.|.+ +++||-+...+.+ +|.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred cccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcCceeEEE
Confidence 344556788999999999999999999999999999999999999999976 9999977642211 010
Q ss_pred -------cCCCCceeEEEEeecCCC-----cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 309 -------CDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 309 -------~~~~~s~~~l~~l~rG~t-----~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
++...--...|.++.|.- ..+|++++||+|++.+.+++.|+|+|+.|-.++.-.....+|.+
T Consensus 153 v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 153 VAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred ecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 111111234577766632 24599999999999999999999999999988766666778854
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=147.59 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=93.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC--CCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG--ILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~--~~g~~s~~~~~~s~~~l~~l 321 (779)
+...|.+.|||+.+...+.+++||.+.|..|+.+||++.++|||.|.+ |++||..-- .+|+.- ..-+.+|..+|
T Consensus 430 G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~~gt~~---k~lsl~~~rtL 505 (888)
T KOG0306|consen 430 GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSVPGTQK---KVLSLKHTRTL 505 (888)
T ss_pred eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEeccCcccc---eeeeeccceEE
Confidence 446789999999999999999999999999999999999999999976 999997532 111100 00011222222
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.- ...|.|+++||||++||++-.|.||+||-+.+..--+++.+|
T Consensus 506 el---~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 506 EL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred ec---cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 21 234999999999999999999999999999998888899999
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=148.69 Aligned_cols=174 Identities=14% Similarity=0.252 Sum_probs=132.5
Q ss_pred CCCEEEEEECCCCcEEEEE----eCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHML----KFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tL----kf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
+.++|.+|++.+|-..+++ -++.+|.+|++. +.+++.+.++-+..||..+...+.++.-- ++
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----~~------ 536 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----SS------ 536 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----CC------
Confidence 4488999999999988888 458899999994 33556689999999999998877776421 10
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
+. .+.|. ..
T Consensus 537 -----~~----~iv~h----------------r~---------------------------------------------- 545 (910)
T KOG1539|consen 537 -----IT----GIVYH----------------RV---------------------------------------------- 545 (910)
T ss_pred -----cc----eeeee----------------eh----------------------------------------------
Confidence 00 00010 00
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
++.++.+..+-.|+|+|..+.++++.|.+|++.|++++|||||+.|++|+.|++ |+
T Consensus 546 -----------------------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir 601 (910)
T KOG1539|consen 546 -----------------------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IR 601 (910)
T ss_pred -----------------------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EE
Confidence 001223345668999999999999999999999999999999999999999998 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINP 358 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~ 358 (779)
+||+.++ ..+--+. ......++.|||.|.|||+...| .-|.+|.=..
T Consensus 602 ~wDlpt~--------------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 602 TWDLPTG--------------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEeccCc--------------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999986 2333332 23457899999999999999998 6799997543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-12 Score=129.72 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=88.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..++-||+|++||..-+.-+.+|.+|..-|...+||| .+.++|++|.||+ .++||++.. |. .....
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~--gk----------~~~i~ 187 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSP--GK----------FMSIE 187 (311)
T ss_pred EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCC--Cc----------eeEEE
Confidence 3457899999999999999999999999999999999 5889999999998 899998753 11 22222
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCcee-eccC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVN-FQPT 368 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~-~~~H 368 (779)
. +...|.++.|+. |-..|+||+.|++|++|||....-++. +.+|
T Consensus 188 a----h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 188 A----HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred e----ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 1 235799999998 667789999999999999988765532 3455
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=144.38 Aligned_cols=114 Identities=16% Similarity=0.333 Sum_probs=86.5
Q ss_pred cccccCCCCeEEEEECCCCc-EEEEec-----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN-VIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~-~v~~f~-----aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
.|.+...||+++|||+..-+ .+..|+ +-.-+++..+|+|||+++|+|..||. |.+|+....
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------------ 349 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------------ 349 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------------
Confidence 46677899999999998642 223332 33458899999999999999999997 999997432
Q ss_pred ceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 314 SYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 314 s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.++..+.++..+... .|.||+||+||++|++-+.|++++||||..+......+
T Consensus 350 ~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 350 TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 123333343333332 49999999999999999999999999999887765543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-13 Score=141.99 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=85.9
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
|..++.|-.+..||++.. .++..+++|.++|..+.|||.|+-+++||.|.+ |+||.+..+ ..+.+|
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~------------~SRdiY 310 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHG------------HSRDIY 310 (433)
T ss_pred eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCC------------cchhhh
Confidence 566788889999999874 578889999999999999999999999999987 999998765 112334
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
--.|- ..|.++.||.|++||.+||+|+.|++|.-....
T Consensus 311 htkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 311 HTKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hHhhh---heeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 33332 248999999999999999999999999986543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=150.18 Aligned_cols=118 Identities=14% Similarity=0.248 Sum_probs=91.6
Q ss_pred ccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
|+++...|.+++||++. .++...|.||.++|.|+.|+|++.+||||+.|+. |+|||...+ ....+.
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~------------~~~~~~ 258 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDS------------RAKPKH 258 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCC------------Ccccee
Confidence 45566789999999986 4678889999999999999999999999999987 999998754 112233
Q ss_pred EeecCCCcccEEEEEEcCCCCE-EEEEeC--CCeEEEEecCCCC-CceeeccCCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNW-IMISSS--RGTSHLFAINPLG-GSVNFQPTDANFTT 374 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~-LAtgS~--DGTVhIwdl~~~g-g~~~~~~H~~~~~~ 374 (779)
+.+ |.++|..+.|-|+-++ ||++++ |-.|||||+...- .-.++..|++.+..
T Consensus 259 tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 259 TIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred EEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 443 3467999999998776 555554 6789999996543 34577888776653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-13 Score=143.65 Aligned_cols=187 Identities=16% Similarity=0.294 Sum_probs=136.6
Q ss_pred CCEEEEEECCCCcEEEEEeC--CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf--~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++||+|+.. -..|+.++- ...|++++|+ .+++.++.|++|+|||....+....|.+| ++
T Consensus 159 gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH--------------gw 223 (464)
T KOG0284|consen 159 GGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH--------------GW 223 (464)
T ss_pred CceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC--------------CC
Confidence 4789999884 445666653 4789999996 56778899999999999987776666554 11
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+-+ +++- |+
T Consensus 224 dVks-----vdWH-------------P~---------------------------------------------------- 233 (464)
T KOG0284|consen 224 DVKS-----VDWH-------------PT---------------------------------------------------- 233 (464)
T ss_pred Ccce-----eccC-------------Cc----------------------------------------------------
Confidence 1111 1111 11
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.+.+++++.|..|++||.+++.+++++.+|+..|..++|+|+|.+|+|+|.|. .++|||
T Consensus 234 --------------------kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~D 292 (464)
T KOG0284|consen 234 --------------------KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFD 292 (464)
T ss_pred --------------------cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEe
Confidence 01233445667999999999999999999999999999999999999999996 599999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 371 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~ 371 (779)
++.- ..++.+ ||+. ..|.+++|+| .-.+|.+|+.||.|..|.+-.......+ .+|...
T Consensus 293 iR~m--------------kEl~~~-r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 293 IRTM--------------KELFTY-RGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGE 352 (464)
T ss_pred hhHh--------------HHHHHh-hcch-hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccc
Confidence 9842 334444 5543 3599999999 4568899999999999999733333333 345443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=120.19 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=130.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.++.+.....+..+.++ ++.++++ .+++|++||+.+.+.+..+..... ..
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------------~~ 118 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-------------PE 118 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-------------cc
Confidence 368999999999998888765556777785 5555443 478999999999887777643210 11
Q ss_pred ceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+++.| ++|+++... +..+..+-....+.+. ....+..
T Consensus 119 ~~~~~~dg~~l~~~~~~--------------------------~~~~~~~d~~~~~~~~--~~~~~~~------------ 158 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSET--------------------------TNMAHFIDTKTYEIVD--NVLVDQR------------ 158 (300)
T ss_pred eEEECCCCCEEEEEecC--------------------------CCeEEEEeCCCCeEEE--EEEcCCC------------
Confidence 234433 455554311 0000000000000000 0000000
Q ss_pred cCCCcCccccccCCCCCCCccCCcc-cccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEEEEEcCCCCEEEEEe-
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHF-PDADNVGMVIVRDIVSKNVIAQFRAHK-----S--PISALCFDPSGILLVTAS- 287 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~-~s~~~dG~V~VwDl~s~~~v~~f~aHt-----~--~IsaLaFSPdG~lLATaS- 287 (779)
+ ..+ ...++ | ..+ +.+..+|.|.+||+.+++.+..+..+. . ....++|+|+|++++.+.
T Consensus 159 -~---~~~-~~s~d----g---~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 159 -P---RFA-EFTAD----G---KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred -c---cEE-EECCC----C---CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 0 000 00011 1 012 334567999999999998877765332 1 234689999999865543
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeec
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+++ |.+||+.++ ..+..+..+ ..+.+++|+|||++|++++ .+|+|+|||+........++
T Consensus 227 ~~~~-i~v~d~~~~--------------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 227 PANR-VAVVDAKTY--------------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCe-EEEEECCCC--------------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 3444 899998764 222222222 2478999999999998874 68999999999876555554
Q ss_pred c
Q 004015 367 P 367 (779)
Q Consensus 367 ~ 367 (779)
.
T Consensus 289 ~ 289 (300)
T TIGR03866 289 V 289 (300)
T ss_pred c
Confidence 3
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-12 Score=136.10 Aligned_cols=217 Identities=18% Similarity=0.268 Sum_probs=141.3
Q ss_pred CEEEEEECCCCcEEEEEeCC-CCEEEEEEcCc---EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCSSR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s~r---lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++-++|-.+++.+.+++.. -.|.++.+++. ++..+.+..|+||...+-.+...+..|..+.. -
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~------------~ 308 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT------------G 308 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce------------e
Confidence 57889999999999999874 46999999743 23346788999999988776666655532211 1
Q ss_pred eee--cCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAV--GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAl--gpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.+ ...||-.++++ .+++-+..+..++|..-.....+..+. +..+-
T Consensus 309 ls~h~tgeYllsAs~d---------------------------~~w~Fsd~~~g~~lt~vs~~~s~v~~t-----s~~fH 356 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASND---------------------------GTWAFSDISSGSQLTVVSDETSDVEYT-----SAAFH 356 (506)
T ss_pred eeeccCCcEEEEecCC---------------------------ceEEEEEccCCcEEEEEeeccccceeE-----EeeEc
Confidence 111 12444444322 111111111222111100000011111 00111
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
| +|.+ |..+..||.|+|||+.+...++.|.+|+++|.+|+|+-+|.+|||+.+|+. |++||
T Consensus 357 p---------------DgLi---fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwD 417 (506)
T KOG0289|consen 357 P---------------DGLI---FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWD 417 (506)
T ss_pred C---------------CceE---EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEE
Confidence 1 2322 456678999999999999999999999999999999999999999999986 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
++.. .....+.+..+ ..|.+++|.+.|+||++++.|=+|++++-.+
T Consensus 418 LRKl------------~n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 418 LRKL------------KNFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred ehhh------------cccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 9864 11122333222 2488999999999999998888888877443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=138.05 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=145.4
Q ss_pred CCEEEEEECCCCcEEEEEeC---------CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEec-CCcccCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKF---------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPS 129 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf---------~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t-~p~~~~~p~ 129 (779)
.+-|.+|+..+|+..+.|++ ..+|.+|.|+ ..+||. +.|++|+||.+.|+.|++.+.. |..
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------ 307 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------ 307 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------
Confidence 47799999999999888873 5789999997 456776 7899999999999999888752 211
Q ss_pred CCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 130 AGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 130 s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+. .+ |.|+ ++.
T Consensus 308 ------Gv--t~-----l~FS-------------------------------------rD~------------------- 318 (508)
T KOG0275|consen 308 ------GV--TC-----LSFS-------------------------------------RDN------------------- 318 (508)
T ss_pred ------Ce--eE-----EEEc-------------------------------------cCc-------------------
Confidence 00 11 1121 000
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
..+.+++.|-+|+|.-++++++++.|++|++-|+...|++||..+.+||.|
T Consensus 319 -----------------------------SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 319 -----------------------------SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred -----------------------------chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 022345678899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCC----CCCCcc-----------CCC-------CceeEE--------EEeecCCC-cccEEEEEEcCC
Q 004015 290 GHNINIFKIIPGIL----GTSSAC-----------DAG-------TSYVHL--------YRLQRGLT-NAVIQDISFSDD 338 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~----g~~s~~-----------~~~-------~s~~~l--------~~l~rG~t-~a~I~sIaFSpD 338 (779)
|+ |+||+..+... .+.+.. .++ .+...+ ..+..|.. .....+++.||.
T Consensus 370 gt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred cc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC
Confidence 98 89999876511 000000 000 000001 11111111 112457889999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 339 SNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 339 g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|.|+.+.+.|+..+.|.+..++-+.++.-|...
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkd 481 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD 481 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeeccccc
Confidence 999999999999999999988777777666543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=120.86 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=122.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEE-EE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlL-aV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||+.+++.++++.....+..++++ ++.+ ++ ..++.|++||+.+++.+..+..+..
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------------- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------
Confidence 67999999999999999876667888885 4554 44 3568999999999887665532210
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+..+++.. +|..+
T Consensus 75 ----~~~~~~~~---------------------------~g~~l------------------------------------ 87 (300)
T TIGR03866 75 ----PELFALHP---------------------------NGKIL------------------------------------ 87 (300)
T ss_pred ----ccEEEECC---------------------------CCCEE------------------------------------
Confidence 01122220 11111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
++....++.|++||+.+.+.+..+..+ ..+.+++|+|+|++|++++.++..+.+||..
T Consensus 88 ---------------------~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 88 ---------------------YIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ---------------------EEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 011234578999999998888888643 3468899999999999999887767888976
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
.. ..+..+..+ ..+..++|+||+++|++++ .++++++||+.....
T Consensus 146 ~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 146 TY--------------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CC--------------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 54 222222222 2356899999999986554 599999999987543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-13 Score=140.35 Aligned_cols=218 Identities=12% Similarity=0.179 Sum_probs=143.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEE-EEeCCeEEEEeCCCCc---EEEEEecCCcccCCCCCCCcccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVA-ICQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLa-Vs~d~~I~IwD~~T~e---~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
+..||++||..||++++++-+ ...|..++|+..+++ .+-|..|.+||+..-. +.+.|.+|- ..
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr------------Aa 322 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------------AA 322 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh------------hh
Confidence 468999999999999999865 678999999866555 5778999999998654 222333331 23
Q ss_pred ccceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.|.+.++.+++..++.+ +.+|++.. +. .-++|... ..|.
T Consensus 323 VNvVdfd~kyIVsASgDRTikvW~~st------------------~e--------fvRtl~gH-----kRGI-------- 363 (499)
T KOG0281|consen 323 VNVVDFDDKYIVSASGDRTIKVWSTST------------------CE--------FVRTLNGH-----KRGI-------- 363 (499)
T ss_pred eeeeccccceEEEecCCceEEEEeccc------------------ee--------eehhhhcc-----cccc--------
Confidence 45566666666665432 23332110 00 00111100 0000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
++-.. + ...+++++.|.+|++||+..+.++..+++|..-|.|+.|+. +.+++|.-||+ |+
T Consensus 364 ------------AClQY--r---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGk-ik 423 (499)
T KOG0281|consen 364 ------------ACLQY--R---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGK-IK 423 (499)
T ss_pred ------------eehhc--c---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccce-EE
Confidence 00000 0 11346778899999999999999999999999999999964 78999999998 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|||+..+.. +...+ ...++..+-+ +..+|..+.|. ...+++++.|.||.|||.-.+
T Consensus 424 vWdl~aald-pra~~----~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALD-PRAPA----STLCLRTLVE--HSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccC-Ccccc----cchHHHhhhh--ccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 999987521 10000 1122333322 23468889885 567899999999999999653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=147.69 Aligned_cols=189 Identities=15% Similarity=0.277 Sum_probs=142.2
Q ss_pred CCEEEEEECCCCc------EEEEEeC-CCCEEEEEE--cC-cEEEEEeCCeEEEEeCCCC--cEEEEEecCCcccCCCCC
Q 004015 63 PTVVHFYSLRSQS------YVHMLKF-RSPIYSVRC--SS-RVVAICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 63 ~~tVrIWDL~Tge------~V~tLkf-~s~V~sV~~--s~-rlLaVs~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s 130 (779)
.+.|++|+..... ++.+++. ...|.++.. ++ .+|.++.|.+|++|++... -|+.+|.+|..-.
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV----- 120 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV----- 120 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchh-----
Confidence 3789999986532 3555554 456777666 34 5777899999999999977 5777777775421
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..|||... +..
T Consensus 121 --------------kcla~~ak--------------------------~~~----------------------------- 131 (735)
T KOG0308|consen 121 --------------KCLAYIAK--------------------------NNE----------------------------- 131 (735)
T ss_pred --------------eeeeeccc--------------------------Cce-----------------------------
Confidence 12455310 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEE--------EEec-cCCCCeEEEEEcCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVI--------AQFR-AHKSPISALCFDPS 279 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v--------~~f~-aHt~~IsaLaFSPd 279 (779)
.++++.-|+.|.|||+.++ +.+ ..+. +|..+|.+|+-++.
T Consensus 132 -----------------------------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 132 -----------------------------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred -----------------------------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 1234456789999999876 222 2333 88899999999999
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 280 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 280 G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|+++++|+..+- +++||-++. ..+.+| ||++. .|.++-.++||+.+.++|+||||++|||...
T Consensus 183 ~t~ivsGgtek~-lr~wDprt~--------------~kimkL-rGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 183 GTIIVSGGTEKD-LRLWDPRTC--------------KKIMKL-RGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ceEEEecCcccc-eEEeccccc--------------cceeee-ecccc-ceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 999999999975 999998764 556777 48765 4999999999999999999999999999999
Q ss_pred CCceeeccCCCC
Q 004015 360 GGSVNFQPTDAN 371 (779)
Q Consensus 360 gg~~~~~~H~~~ 371 (779)
.+..++..|...
T Consensus 246 rCl~T~~vH~e~ 257 (735)
T KOG0308|consen 246 RCLATYIVHKEG 257 (735)
T ss_pred ceeeeEEeccCc
Confidence 999999988764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-12 Score=137.25 Aligned_cols=174 Identities=16% Similarity=0.243 Sum_probs=130.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
...+||+||+..+.|.+++-+.+.+.+|.++...++.+ +|++|++||+++..+.+.+..... +..+
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~-------------vtSl 347 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR-------------VTSL 347 (459)
T ss_pred ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc-------------eeeE
Confidence 46899999999999999999999999999985555543 789999999999888777743210 0001
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.++ + +|.
T Consensus 348 ~ls--------------------~--------------~g~--------------------------------------- 354 (459)
T KOG0288|consen 348 DLS--------------------M--------------DGL--------------------------------------- 354 (459)
T ss_pred eec--------------------c--------------CCe---------------------------------------
Confidence 000 0 000
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt----~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.+.+...|.++.+.|+++.+....|.|-. ..++.+.|||+|.|+|+||.||. |+||
T Consensus 355 -------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW 414 (459)
T KOG0288|consen 355 -------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIW 414 (459)
T ss_pred -------------------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEE
Confidence 01112345678899999998888877542 35899999999999999999997 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
++.++ .....+.....++.|.+++|+|-|.++++++.++.+.+|.
T Consensus 415 ~v~tg--------------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTG--------------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCc--------------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99886 3333443333333599999999999999999999999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-12 Score=150.80 Aligned_cols=122 Identities=12% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCCeEEEEECCC------------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCC--
Q 004015 246 NVGMVIVRDIVS------------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA-- 311 (779)
Q Consensus 246 ~dG~V~VwDl~s------------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~-- 311 (779)
.||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+|+. |.||+-.+. +....++.
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-v~iW~~~~~--~~~~~fgs~g 111 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-VMIWERAEI--GSGTVFGSTG 111 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce-EEEeeeccc--CCcccccccc
Confidence 567778998753 3467888999999999999999999999999964 899998751 11111111
Q ss_pred ---CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 312 ---GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 312 ---~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+...+..+...||+ ...|++++||||+.|||++|.|++|+||+..+++....+++|...
T Consensus 112 ~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL 173 (942)
T ss_pred cccccceeeEEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc
Confidence 11222233334674 457999999999999999999999999999999877888999854
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-12 Score=143.17 Aligned_cols=176 Identities=14% Similarity=0.215 Sum_probs=138.8
Q ss_pred CCCEEEEEECCC-----CcE--------EEEEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 62 VPTVVHFYSLRS-----QSY--------VHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 62 ~~~tVrIWDL~T-----ge~--------V~tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
..++|+|||.+- |.. -++|++...|.+|+++ +++|||+ ++++|+||=+.|++...+|-+|..|.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 358999999752 211 2567788999999998 8999996 68999999999999888887775432
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
.| |.+ +| +++
T Consensus 554 ~s------------mDI-----S~-----------------------------DSk------------------------ 563 (888)
T KOG0306|consen 554 LS------------MDI-----SP-----------------------------DSK------------------------ 563 (888)
T ss_pred eE------------Eec-----cC-----------------------------CcC------------------------
Confidence 11 111 01 000
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVT 285 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLAT 285 (779)
.+++++.|..|+||-++=|.|-+.|-||..+|.++.|-|+..++.|
T Consensus 564 ----------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 564 ----------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred ----------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 1234456788999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|+.||. |+-||-... .++.+|. |++ ..|++++-+|+|.|++++|.|.+|++|.-..
T Consensus 610 ~gKD~k-vKqWDg~kF--------------e~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGK-VKQWDGEKF--------------EEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcce-EEeechhhh--------------hhheeec-cch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999987 999997653 5566664 433 4699999999999999999999999998765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-11 Score=138.11 Aligned_cols=209 Identities=16% Similarity=0.206 Sum_probs=142.9
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
-.||||+..|++.|+++.- +.-|++|+.. +-+|..+.|-.|++||... ..|.+++++|..-. -
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV------------M 144 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV------------M 144 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEE------------E
Confidence 4699999999999999985 6779999985 4456667888999999985 47889998885321 1
Q ss_pred ceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.+++.| .-+|.++- .+.+|..|.-.|. + +|-. .+.|...+. |+
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-f-------------------------Tl~g-----HekGVN~Vd-yy 192 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-F-------------------------TLEG-----HEKGVNCVD-YY 192 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCc-e-------------------------eeec-----cccCcceEE-ec
Confidence 233333 22333321 2334433321110 0 0000 001111110 00
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+ .+. +..++++..|-.|+|||.+++.|++++.+|+..|++++|.|.=.+++|||.||+ +
T Consensus 193 ----~----------~gd------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-v 251 (794)
T KOG0276|consen 193 ----T----------GGD------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-V 251 (794)
T ss_pred ----c----------CCC------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-E
Confidence 0 011 124567888999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
|||...+. +....|..|. .+|+||+-.++++.+|+|.+.|.|.|
T Consensus 252 riWhs~Ty--------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 252 RIWNSKTY--------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCcce--------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99997764 2222333333 35999999999999999999987765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=134.80 Aligned_cols=114 Identities=14% Similarity=0.278 Sum_probs=86.6
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCC-ccCCCCceeE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSS-ACDAGTSYVH 317 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s-~~~~~~s~~~ 317 (779)
+++++.|++|.+||+++. +++.+|.+|...|.+|.|||. -+.||+++.|++ ++|||+..- ...++ .....+....
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i-g~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI-GEEQSPEDAEDGPPEL 365 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc-ccccChhhhccCCcce
Confidence 345567899999999974 588999999999999999996 679999999998 899998753 11111 1111122333
Q ss_pred EEEeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINP 358 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~ 358 (779)
++ .++|++ ++|.+++|.|.-.| |++.+.|+.++||+...
T Consensus 366 lF-~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 366 LF-IHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eE-EecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 33 467865 56999999999888 56678899999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=138.30 Aligned_cols=117 Identities=15% Similarity=0.325 Sum_probs=100.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|++.+.||+|+|||+...+.-..+.+|.-.|.++.|.|.-.+||+||.|. .|++||.+++ .++.
T Consensus 194 kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg--------------~cl~ 258 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSG--------------SCLA 258 (464)
T ss_pred eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCc--------------chhh
Confidence 467788999999999999888888999999999999999999999999996 6999999876 3455
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+++. + ...|..+.|+|++.||+++|.|.++++|||..-....++++|.....
T Consensus 259 tlh~-H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 259 TLHG-H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred hhhh-c-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 5542 2 23499999999999999999999999999998778888999965444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-11 Score=122.45 Aligned_cols=188 Identities=16% Similarity=0.224 Sum_probs=138.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++.+|-...|+.+-+++. .+.|.++..+ +++|..+.|.++++||..|++++.++.+-..+
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V--------------- 96 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV--------------- 96 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee---------------
Confidence 5678998889999999985 6788888884 55666689999999999999999999763110
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
|-+-|.. +|.++.. ..+ +
T Consensus 97 -----k~~~F~~---------------------------~gn~~l~-~tD--~--------------------------- 114 (327)
T KOG0643|consen 97 -----KRVDFSF---------------------------GGNLILA-STD--K--------------------------- 114 (327)
T ss_pred -----EEEeecc---------------------------CCcEEEE-Eeh--h---------------------------
Confidence 0011110 1111100 000 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~ 292 (779)
. -...+.|.++|++ +.+++..+..+.+.|+.+-|+|-|++|++|..||.
T Consensus 115 -------------~----------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~- 170 (327)
T KOG0643|consen 115 -------------Q----------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS- 170 (327)
T ss_pred -------------h----------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-
Confidence 0 0133567777777 56778888999999999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.+||+.++ ..+..-.+- +.+.|.+|+||+|..+++++|.|.|.++||+.+...+-++.+
T Consensus 171 is~~da~~g--------------~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 171 ISIYDARTG--------------KELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred EEEEEcccC--------------ceeeechhh-hccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 999999986 222222222 234699999999999999999999999999998877666655
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=126.26 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=138.5
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcE-EEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~-l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
..-+-++||.-||..++++.++.-|.+++|+ .++|..+.++-++|||+...+- ...+..|+.- +.-
T Consensus 79 adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~----------Ir~ 148 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG----------IRT 148 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc----------cee
Confidence 3567899999999999999999999999996 4566668888899999986542 1222222110 000
Q ss_pred cceeec-CceeEeeCC-CceecC--CCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 138 GPLAVG-PRWLAYSGS-PVVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 138 ~piAlg-pRwLAyas~-~~i~~~--sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
--...+ -..|..+.. .+..|+ +|. .+.+ +
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt--------------------~v~s---------------------------L 181 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGT--------------------EVQS---------------------------L 181 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCc--------------------EEEE---------------------------E
Confidence 000000 012333322 233342 110 0000 0
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
. ++....+.... . .+.+++....+.|..||..+..+++.++.. ..|.+...+|+-..++.|..|+. +
T Consensus 182 ~--~~s~VtSlEvs-~--------dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~ 248 (334)
T KOG0278|consen 182 E--FNSPVTSLEVS-Q--------DGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-V 248 (334)
T ss_pred e--cCCCCcceeec-c--------CCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-E
Confidence 0 00000111100 0 123455566789999999999999988754 36888999999999999999987 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+.||..++ ..+-.+..|+. ..|.|+.|||||...|+||.||||+||...+..
T Consensus 249 ~kfDy~Tg--------------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTG--------------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCC--------------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 89998886 22222235543 469999999999999999999999999997753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=128.86 Aligned_cols=101 Identities=15% Similarity=0.280 Sum_probs=82.2
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++.|..+++||-+++ -+..+|.+|++-|++++++|... +|+++|.|++ +++||++.. .-.
T Consensus 316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~-------------k~p 381 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST-------------KAP 381 (423)
T ss_pred eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC-------------CCc
Confidence 34556778999999875 35678999999999999999655 7899999998 899999864 125
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
||.+.+. .-+|.++.|+. +..|++|+.|.+++||.-.+.
T Consensus 382 lydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 382 LYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred ceeeccC--CceEEEEeccC-CceEEeccCcceEEEeccccc
Confidence 7888664 35699999985 678999999999999987654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-11 Score=122.10 Aligned_cols=161 Identities=15% Similarity=0.222 Sum_probs=127.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
..|.+.|.++.+.+++.+|+..+..+.++ +.++ +...-+.|.|..--.++.+++|..||. .| -+|
T Consensus 128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nC----------icI 195 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NC----------ICI 195 (313)
T ss_pred ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ce----------EEE
Confidence 67999999999999999999999999995 4444 445558999999999999999998863 11 123
Q ss_pred eecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 141 AVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 141 Algp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.++| |++|.
T Consensus 196 ~f~p~GryfA~--------------------------------------------------------------------- 206 (313)
T KOG1407|consen 196 EFDPDGRYFAT--------------------------------------------------------------------- 206 (313)
T ss_pred EECCCCceEee---------------------------------------------------------------------
Confidence 3332 33333
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
+..|..|.+||+...-+++.|..|.-||..|.||.||++||+||+| +.|-|=++
T Consensus 207 -------------------------GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED-h~IDIA~v 260 (313)
T KOG1407|consen 207 -------------------------GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED-HFIDIAEV 260 (313)
T ss_pred -------------------------ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc-ceEEeEec
Confidence 3345568899999999999999999999999999999999999999 55877777
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
.+| ..++..+ +.+....+||.|....||.+.+|
T Consensus 261 etG--------------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETG--------------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccC--------------CeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence 776 3444543 23456899999999999998876
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-12 Score=147.82 Aligned_cols=182 Identities=15% Similarity=0.270 Sum_probs=136.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.+.+|....-..+..|.. .++|.+|.|+ .++|+. +.+++|++||+.+.+.+++|.+|... +
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--------------~ 115 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--------------I 115 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--------------c
Confidence 6677888876666777665 7899999996 566665 67789999999999999999776321 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.| +|. | +|.
T Consensus 116 ~sv-----~f~-------------P--------------~~~-------------------------------------- 125 (825)
T KOG0267|consen 116 TSV-----DFH-------------P--------------YGE-------------------------------------- 125 (825)
T ss_pred cee-----eec-------------c--------------ceE--------------------------------------
Confidence 111 111 0 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..|+.+.+||++...|...+.+|..-|.+++|+|+|++++.+.+|-+ ++|||+.
T Consensus 126 --------------------~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~ 184 (825)
T KOG0267|consen 126 --------------------FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLT 184 (825)
T ss_pred --------------------EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccc
Confidence 1123355678999999999999999999999999999999999999999865 9999987
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+ ..+..|. + +..+|+.+.|.|-.-.++.||.|+|+++||++++.-.....
T Consensus 185 ag--------------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 185 AG--------------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred cc--------------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 65 2222332 1 12458899999999999999999999999999764433333
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-11 Score=126.55 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=82.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+.-||+|.|||+...++ ++.-.|..+|..|.|-+ -.+|+||+.+|+ |++||.+++ ..+++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG--------------~l~~~ 363 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDARTG--------------QLKFT 363 (399)
T ss_pred hhcccccceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeecccc--------------ceEEE
Confidence 34566789999999998764 55567999999999999 778999999997 999999987 34444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+ +|+. ..|++++.+||.++++++|.|++.+||++.
T Consensus 364 y-~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 364 Y-TGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred E-ecCc-hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 3 5754 459999999999999999999999999874
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=140.83 Aligned_cols=111 Identities=17% Similarity=0.314 Sum_probs=91.8
Q ss_pred CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 238 NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 238 ~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.+.+++-|.+|++|++....+++.|. |..-|+|++|+| |-+|+++||.||+ ++||+|... .+.
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~------------~Vv 445 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK------------KVV 445 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC------------eeE
Confidence 3466788899999999999999999995 999999999999 8899999999998 899999864 222
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.-+.++ --|+.+||+|||++.++|+.+|.|++|+.....-...++.
T Consensus 446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 222222 2399999999999999999999999999977654444443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-11 Score=127.23 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=85.4
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
-|++.+-||.|+|||++++ .++.+ ++|.+.|+.|.|+..-.+||+|++||+ ++|||++....+. ..
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~---------pV 340 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQ---------PV 340 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCCC---------cc
Confidence 4567788999999999987 45544 899999999999999889999999998 8999999862221 12
Q ss_pred EEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..++.++ +.|++|.|+| +...||+++.|..|.||||.-.
T Consensus 341 A~fk~Hk----~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 341 ATFKYHK----APITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEecc----CCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 3344443 4699999998 5678999999999999999754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=128.98 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=86.5
Q ss_pred CeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
-++++||+.+.++...- ..|++.|+++.+|+.|++.+|||.||. |+|||--.. +++.++.+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~--------------rCv~t~~~A 302 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSN--------------RCVRTIGNA 302 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccH--------------HHHHHHHhh
Confidence 47899999988765443 279999999999999999999999998 999995432 455566566
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+..+.|.+..|+.+|+||.+++.|.++++|.|.++.......
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 666779999999999999999999999999999876655543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=124.88 Aligned_cols=171 Identities=15% Similarity=0.243 Sum_probs=133.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+++|+||+++.+.++++.-+.++.+|.|+ .+++..+-++.|++||++..+.++++.+|..+.. -
T Consensus 154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt------------~ 221 (338)
T KOG0265|consen 154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTIT------------G 221 (338)
T ss_pred CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCcee------------e
Confidence 589999999999999999889999999995 6778888999999999999999999998844210 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
|+++ | +|+.
T Consensus 222 lsls--------------------~--------------~gs~------------------------------------- 230 (338)
T KOG0265|consen 222 LSLS--------------------R--------------YGSF------------------------------------- 230 (338)
T ss_pred EEec--------------------c--------------CCCc-------------------------------------
Confidence 1110 0 1111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC----CcEEEEeccCCC----CeEEEEEcCCCCEEEEEeCCCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS----KNVIAQFRAHKS----PISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s----~~~v~~f~aHt~----~IsaLaFSPdG~lLATaS~DGt 291 (779)
+.+-.-|.+|++||++- .+++..|.+|.. .....+|||+++.+..+|.|..
T Consensus 231 ---------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 231 ---------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred ---------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 11123467899999984 457888987753 3445789999999999999976
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+.|||...- ..+|.| .|+. ..|.+++|.|.-.+|.++++|+||.+=
T Consensus 290 -vyvwd~~~r--------------~~lykl-pGh~-gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 290 -VYVWDTTSR--------------RILYKL-PGHY-GSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred -EEEeecccc--------------cEEEEc-CCcc-eeEEEeeecCCCcEEEEeccCceeEee
Confidence 899997642 568888 4543 359999999999999999999999873
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=130.65 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=90.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC------CCCCc-----
Q 004015 243 DADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL------GTSSA----- 308 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~------g~~s~----- 308 (779)
-+...|+|-+|+++++-....| ++|.++|+.|+.+--+++++||+.+|. ++.||...... +.+..
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeee
Confidence 3456799999999999988899 699999999999999999999999997 89999876531 11100
Q ss_pred --cC-----CCCceeEEEEe--------ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 309 --CD-----AGTSYVHLYRL--------QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 309 --~~-----~~~s~~~l~~l--------~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++ -..-.-.++.. .+|++ .+|++++|||||+||++++.|+||++||+-+....-.+
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 00 00000111211 14543 56999999999999999999999999999876544343
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=120.52 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=135.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEe--CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~--d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+|+|||..+|.+++++.. +--|.-++|. ..++..+. +.+|+..++.+.+.++.+.+|....
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V------------ 103 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRV------------ 103 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceE------------
Confidence 5799999999999999986 4567777773 44555554 7799999999999999998874321
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.++++ |
T Consensus 104 ~sL~~s--------------------P----------------------------------------------------- 110 (311)
T KOG1446|consen 104 NSLSVS--------------------P----------------------------------------------------- 110 (311)
T ss_pred EEEEec--------------------C-----------------------------------------------------
Confidence 111110 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
. ...|.+++.|.+|++||++..++.-.+..-..+| .+|+|+|-++|+|.... .|+|||
T Consensus 111 ------------~-------~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~-~IkLyD 168 (311)
T KOG1446|consen 111 ------------K-------DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSE-LIKLYD 168 (311)
T ss_pred ------------C-------CCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCC-eEEEEE
Confidence 0 0124566788999999999888877665444444 78999999999998876 599999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
++..-.|+ -..+.+..+ ..+++..|.|||||+++..++..+-++|.|-=++.-..+|..|
T Consensus 169 ~Rs~dkgP----------F~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~ 228 (311)
T KOG1446|consen 169 LRSFDKGP----------FTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY 228 (311)
T ss_pred ecccCCCC----------ceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec
Confidence 98652222 112233222 2456899999999999999999999999998666555555555
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=117.95 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=87.9
Q ss_pred cCCCCeEEEEECCC--CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVS--KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s--~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++.|.++.||.-.. .+++.++++|...|-|++||++|.||||+|.|+. +-||.+... ..+..+-.|
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS-VWiWe~ded-----------dEfec~aVL 146 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS-VWIWEIDED-----------DEFECIAVL 146 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe-EEEEEecCC-----------CcEEEEeee
Confidence 34566777776543 4789999999999999999999999999999965 899998743 134555555
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC---CCceeeccCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL---GGSVNFQPTDA 370 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~---gg~~~~~~H~~ 370 (779)
+ +++ ..|.-+.|.|.-..|+++|.|.||++|+-.+. ....++.+|++
T Consensus 147 ~-~Ht-qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~ 196 (312)
T KOG0645|consen 147 Q-EHT-QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN 196 (312)
T ss_pred c-ccc-ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc
Confidence 3 333 34888999999999999999999999998752 23566778854
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=134.03 Aligned_cols=189 Identities=23% Similarity=0.353 Sum_probs=137.5
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+||||+..-+.+.++ +.+.|..|.+| ..+|| |+..+.|.|..+.|...-.++.. ++ +
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-~s--------------g 164 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-DS--------------G 164 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-CC--------------C
Confidence 3789999999766666666 46899999996 56666 57888999999998775544421 10 0
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
-. -|.|-|...+ |.
T Consensus 165 qs---vRll~ys~sk--------------------------------------r~------------------------- 178 (673)
T KOG4378|consen 165 QS---VRLLRYSPSK--------------------------------------RF------------------------- 178 (673)
T ss_pred Ce---EEEeeccccc--------------------------------------ce-------------------------
Confidence 00 1455554210 00
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS-GILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vw 296 (779)
++..+..+|.|.+||+....++.++. +|..|...|||+|. ..+||+.+-|.+ |.+|
T Consensus 179 ---------------------lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~y 236 (673)
T KOG4378|consen 179 ---------------------LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIY 236 (673)
T ss_pred ---------------------eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEe
Confidence 12234578999999999999888765 99999999999996 558899999976 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 371 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~ 371 (779)
|+... .....+- ..++...++|+++|.+|++|+++|.+.-||+.....++.+ ..|...
T Consensus 237 D~~s~--------------~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 237 DIRSQ--------------ASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred ecccc--------------cccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 98753 1111111 1345789999999999999999999999999988877766 466544
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=125.99 Aligned_cols=166 Identities=20% Similarity=0.330 Sum_probs=116.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
..+|+|||.+....+-++.-...|+++..++..|+| +.+.+|.+||++++...++..+.+..+..
T Consensus 115 D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt-------------- 180 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT-------------- 180 (323)
T ss_pred CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEE--------------
Confidence 478999999987777777777799999998777766 78899999999999877766654322211
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
|.++.-.+. +
T Consensus 181 ---R~v~~~pn~--------------------------e----------------------------------------- 190 (323)
T KOG1036|consen 181 ---RCVALVPNG--------------------------E----------------------------------------- 190 (323)
T ss_pred ---EEEEEecCC--------------------------C-----------------------------------------
Confidence 222221100 0
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----cEEEEeccCC---------CCeEEEEEcCCCCEEEEEeC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHK---------SPISALCFDPSGILLVTASV 288 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt---------~~IsaLaFSPdG~lLATaS~ 288 (779)
| ++.++-+|.|.|-+++.. +.-..|++|. .||++|+|+|--..||||+.
T Consensus 191 -------------G-----y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 191 -------------G-----YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred -------------c-----eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 0 011123444544444333 2334566664 28999999999889999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
||. |.+||+.+- +.++.|++- ...|-+++|+.||..||++++
T Consensus 253 DG~-V~~Wd~~~r--------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGI-VNIWDLFNR--------------KRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cce-EEEccCcch--------------hhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 996 999998864 456666553 224899999999999999986
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=134.43 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=89.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+...+.+++||-++.+.+..+++|+..|.+|-.++||+.+++||.||+ |++||+... +++.++
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ--------------rCl~T~ 251 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ--------------RCLATY 251 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc--------------ceeeeE
Confidence 44566789999999999999999999999999999999999999999998 999999753 445554
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.- +.. .|+++.-+|+=++|.+|+.||.|..=|+..+.....+
T Consensus 252 ~v-H~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 252 IV-HKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred Ee-ccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 32 222 2999999999999999999999999999887444433
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-11 Score=124.67 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=88.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
....+-||.-..++++..+-+|.+-|+-|+|-+||..|.+|+..--.|..||++.. ...+|.|.|..
T Consensus 228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------------~~pv~~L~rhv 294 (406)
T KOG2919|consen 228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------------RDPVYALERHV 294 (406)
T ss_pred ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------------cchhhhhhhhc
Confidence 33456677777888999999999999999999999999999986667999999874 35577776643
Q ss_pred --CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 326 --TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 326 --t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
|+.+| -....|+|+|||+|+.||.|++||+..++..+.. ..|.+...
T Consensus 295 ~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 295 GDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred cCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 34334 2455899999999999999999999998875544 44544333
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=127.91 Aligned_cols=203 Identities=19% Similarity=0.305 Sum_probs=136.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.|||..|.+.++.++. +..|.+++|. .++++++.|..|++|++..+..+.++-+|+... +++..
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v---------~~Ida 294 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV---------LGIDA 294 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce---------eeech
Confidence 6699999999999999875 7899999993 678999999999999999998888887775321 01111
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++. -|.+-.++.+ +++..|-.....+ ++..|.
T Consensus 295 L~r-eR~vtVGgrD---------------------------rT~rlwKi~eesq----lifrg~---------------- 326 (479)
T KOG0299|consen 295 LSR-ERCVTVGGRD---------------------------RTVRLWKIPEESQ----LIFRGG---------------- 326 (479)
T ss_pred hcc-cceEEecccc---------------------------ceeEEEeccccce----eeeeCC----------------
Confidence 110 0222222111 1111111100000 011111
Q ss_pred CcCccccccCCCCCCCcc-CCcccccCCCCeEEEEECCCCcEEEEec-cCC---C--------CeEEEEEcCCCCEEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTV-NGHFPDADNVGMVIVRDIVSKNVIAQFR-AHK---S--------PISALCFDPSGILLVTA 286 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v-~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt---~--------~IsaLaFSPdG~lLATa 286 (779)
.+++..+. .+ ..||++++.+|.|.+|++..++++.+.+ ||. . .|++|+.-|...++|+|
T Consensus 327 -~~sidcv~-------~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG 398 (479)
T KOG0299|consen 327 -EGSIDCVA-------FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG 398 (479)
T ss_pred -CCCeeeEE-------EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec
Confidence 11222111 11 2378899999999999999999998876 663 2 68999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
|.+|- |++|.+.++. .....++.+. -...|.+|+|+++|++|.+|
T Consensus 399 S~~G~-vrLW~i~~g~----------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 399 SWSGC-VRLWKIEDGL----------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CCCCc-eEEEEecCCc----------cccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 99997 9999998761 1234555553 12359999999999988777
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-10 Score=132.06 Aligned_cols=190 Identities=17% Similarity=0.310 Sum_probs=133.2
Q ss_pred CEEEEEECCCC-cEEEEEe-CCCCEEEEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQ-SYVHMLK-FRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tg-e~V~tLk-f~s~V~sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+.|++|+.-+- +.-.+|. ....|+++++. .++++.+.+++|.+|....++.--.|. ++
T Consensus 35 g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~-------------------Rf 95 (933)
T KOG1274|consen 35 GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA-------------------RF 95 (933)
T ss_pred CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceee-------------------ee
Confidence 45999988776 6666776 67889999995 567777889999999988776432221 12
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
++--|.+||.. +|..+
T Consensus 96 tlp~r~~~v~g---------------------------~g~~i------------------------------------- 111 (933)
T KOG1274|consen 96 TLPIRDLAVSG---------------------------SGKMI------------------------------------- 111 (933)
T ss_pred eccceEEEEec---------------------------CCcEE-------------------------------------
Confidence 22224455542 12211
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
+.++.|-.|+|-++.......++++|+.+|.+|.|+|.|.+||+++.||+ ++|||+..
T Consensus 112 ---------------------aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v~iw~~~~ 169 (933)
T KOG1274|consen 112 ---------------------AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-VQIWDLQD 169 (933)
T ss_pred ---------------------EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-EEEEEccc
Confidence 11234556888888888888999999999999999999999999999998 89999987
Q ss_pred CCC-------------C-CCCc----cCC------------------CCceeEEEEeecCCCcccEEEEEEcCCCCEEEE
Q 004015 301 GIL-------------G-TSSA----CDA------------------GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 301 ~~~-------------g-~~s~----~~~------------------~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAt 344 (779)
+.. . +... -.+ .....++++|+-......+.++.|||.|+|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 511 0 0000 000 011133445533333445889999999999999
Q ss_pred EeCCCeEEEEecCC
Q 004015 345 SSSRGTSHLFAINP 358 (779)
Q Consensus 345 gS~DGTVhIwdl~~ 358 (779)
++.||-|.|||+.+
T Consensus 250 s~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 250 STLDGQILVWNVDT 263 (933)
T ss_pred eccCCcEEEEeccc
Confidence 99999999999984
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=120.39 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-c
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-r 323 (779)
.+-.|++.|+.++..-.++.+|++.|.++.|+|... .|||||.||+ |++||++.. .|+-..-+.- ..+....++ +
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-sgcf~~lD~h-n~k~~p~~~~n 242 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-SGCFRVLDQH-NTKRPPILKTN 242 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-cceeEEeecc-cCccCcccccc
Confidence 445799999999999999999999999999999877 6899999998 899999863 1110000000 001111111 2
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-.+..+|..+||+.|++++++.+.|..+++|....+
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 223456999999999999999999999999999764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=111.37 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=133.2
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEE-EcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVR-CSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~-~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.|.|.+-|..+|+-.+.+.. .+.|.++- ||+-+++. ++|++|++||++-..++.++.+.-.- + ++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------~-gles-- 231 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------G-GLES-- 231 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-------C-Cccc--
Confidence 38899999999999999875 56788764 47777776 78999999999988888887542100 0 0100
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+-|+.+|.+.+-
T Consensus 232 -----------------------------------------savaav~vdpsg--------------------------- 243 (350)
T KOG0641|consen 232 -----------------------------------------SAVAAVAVDPSG--------------------------- 243 (350)
T ss_pred -----------------------------------------ceeEEEEECCCc---------------------------
Confidence 111112211100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
..++++..|....+||++.+++++.|..|+..|.|+.|||...||+|+|-|-. |++-|+.
T Consensus 244 -------------------rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq 303 (350)
T KOG0641|consen 244 -------------------RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ 303 (350)
T ss_pred -------------------ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc
Confidence 02234556678899999999999999999999999999999999999999965 9999986
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
-.. .+.|-.+--+.+..++..+.|.|..--|+++|.|.|+.+|.++
T Consensus 304 gdl------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDL------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cch------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 431 1122222223333456678999998889999999999999885
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=122.16 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=85.9
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+++.+-.|.|||++ ++.+.++..-...-...+.||+|++||+++.--. ++||.+--+..|+ ..++...+
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~------fqev~rvf 272 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGT------FQEVKRVF 272 (420)
T ss_pred EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEeccCcc------hhhhhhhh
Confidence 34567778899999999 8888888877777778899999999999988755 8999875431222 12345566
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.| .|+.. -|..+|||++++.+++.|.||+.+|||+.-
T Consensus 273 ~L-kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 273 SL-KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ee-ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 66 46544 499999999999999999999999999853
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=120.44 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=143.0
Q ss_pred CEEEEEECCCCcEEE-EEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVH-MLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~-tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.+|.+.....++ .+..+++|.++..+ +.+|+.+ -.++||+|.+.|++.+..+..|--...| -.
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITc----------L~ 130 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITC----------LK 130 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeE----------EE
Confidence 367788876555544 34457889999985 6777766 8899999999999998888665211100 01
Q ss_pred eeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+.-...+|-.++++ +++|..-. .+++ +.. ...+-+..+.+.... ++ +
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~----------lv~a-------------~~~-~~~~p~~~f~~Htls-IT----D-- 179 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTD----------LVSA-------------DND-HSVKPLHIFSDHTLS-IT----D-- 179 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEe----------eccc-------------ccC-CCccceeeeccCcce-eE----E--
Confidence 11111222233222 11221000 0000 000 000011111111100 00 0
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+.. ..|-.++.+++.+.|.++++||+..+.++.++. ...+|.+++.+|-++.+..|..+|. |-+.+
T Consensus 180 ------l~i------g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~ 245 (476)
T KOG0646|consen 180 ------LQI------GSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNL 245 (476)
T ss_pred ------EEe------cCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeee
Confidence 000 112235567788999999999999999888765 3468999999999999999999996 77777
Q ss_pred CCCCCCCCCC-ccCC--CCceeEEEEeecCCCc-ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 298 IIPGILGTSS-ACDA--GTSYVHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 298 i~~~~~g~~s-~~~~--~~s~~~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+... ++.+. .-.. -.....+..+ .|+.. ..|+|++.|-||..|++|+.||+|.|||+.......++
T Consensus 246 ~~~~-~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 246 LFKL-SGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred hhcC-Ccccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 6653 11110 0000 0011122223 34443 35999999999999999999999999999776444333
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-11 Score=125.84 Aligned_cols=215 Identities=13% Similarity=0.223 Sum_probs=137.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.+.|+||||.+.+++.+++. .+.|+.|++. ..++.++.|++|+.|-+.- ..++++.+.....+. .. +
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gI--------dh--~ 156 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGI--------DH--H 156 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccccccc--------cc--c
Confidence 47799999999999999997 5799999996 6788899999999998765 355555443211111 00 0
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
- ...-.|..+.++-+|+..|..|- ..+. .|+.++.
T Consensus 157 ~-~~~~FaTcGe~i~IWD~~R~~Pv------------------~sms----------------wG~Dti~---------- 191 (433)
T KOG0268|consen 157 R-KNSVFATCGEQIDIWDEQRDNPV------------------SSMS----------------WGADSIS---------- 191 (433)
T ss_pred c-ccccccccCceeeecccccCCcc------------------ceee----------------cCCCcee----------
Confidence 0 00011222222333333222221 0000 0001000
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
++ ..++- -...++++..|+.|.|||++...++..+.- +..-+.|+|+|.+--+++|++|- ++..||++.
T Consensus 192 --sv-kfNpv------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~-nlY~~DmR~ 260 (433)
T KOG0268|consen 192 --SV-KFNPV------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDH-NLYTYDMRN 260 (433)
T ss_pred --EE-ecCCC------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccc-cceehhhhh
Confidence 00 00110 011234556889999999999887765431 22346799999888899999995 589999875
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
- .+-...++++..| |.+++|||.|+-|++||-|.||+||.++..
T Consensus 261 l--------------~~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 261 L--------------SRPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred h--------------cccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 3 2222345777666 899999999999999999999999999875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=122.44 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=89.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.++++-|.+..+||+.++.++..+.+|....+.++-.|.-++++|+|.|-+ +++||+++. .+.+..
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFRea-------------I~sV~V 352 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREA-------------IQSVAV 352 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhh-------------cceeee
Confidence 345677889999999999999999999999999999999999999999965 999999864 223333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc-eeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~-~~~~~ 367 (779)
| .|++. .|+++.|.-|.+ +++||+|.||+|||+..-..+ .++++
T Consensus 353 F-QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 353 F-QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred e-ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 3 57654 499999999876 669999999999999764433 45554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=130.00 Aligned_cols=220 Identities=16% Similarity=0.299 Sum_probs=142.8
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc-----CcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS-----SRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s-----~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++++||||..-++...+. +.+.|..+.++ .++||. +-|.-|+|||+. ..-.+++|.+|..... .+
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT-------sv 553 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT-------SV 553 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee-------EE
Confidence 679999999888887776 47899999996 467776 567889999986 5667788887743111 01
Q ss_pred cccceeecC---ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccc
Q 004015 136 GYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 212 (779)
Q Consensus 136 ~~~piAlgp---RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y 212 (779)
. +|... +-|..+..+.+.-...+ -.++|........-.+| .++-|+.
T Consensus 554 K---Fa~~gln~~MiscGADksimFr~~q--------------k~~~g~~f~r~t~t~~k------tTlYDm~------- 603 (1080)
T KOG1408|consen 554 K---FACNGLNRKMISCGADKSIMFRVNQ--------------KASSGRLFPRHTQTLSK------TTLYDMA------- 603 (1080)
T ss_pred E---EeecCCceEEEeccCchhhheehhc--------------cccCceecccccccccc------ceEEEee-------
Confidence 1 11110 22222222221110000 00011111000000000 0011111
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~---aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
+.+. .++++.+++|..|+|||+.+++.++.|+ .|.+..-.|..+|+|-||||...|
T Consensus 604 --------------Vdp~-------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 604 --------------VDPT-------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred --------------eCCC-------cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1111 1245677899999999999999999998 567788899999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+ +-+||.-.+ +++.++ .|+.. -|+.+-|++|.++|++.+.||.|.||.+..
T Consensus 663 kt-l~~~Df~sg--------------EcvA~m-~GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 663 KT-LCFVDFVSG--------------ECVAQM-TGHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred Cc-eEEEEeccc--------------hhhhhh-cCcch-heeeeeecccchhheeecCCceEEEEECch
Confidence 87 899998875 333333 35432 389999999999999999999999999965
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=128.47 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=84.9
Q ss_pred ccccCCCCeEEEEECCCCc--EEEEe-ccCCC--CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 241 FPDADNVGMVIVRDIVSKN--VIAQF-RAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~--~v~~f-~aHt~--~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++.+..||.|.+||..+.. +...+ +||.. .|+||+||+||++|++-+.|++ ++|||++.. .
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~-------------k 397 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF-------------K 397 (641)
T ss_pred hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc-------------c
Confidence 4556789999999986543 33333 49987 9999999999999999999988 899999874 1
Q ss_pred eEEEEeecCCCc-ccEEEEEEcCCCCEEEEEeC------CCeEEEEecCCCCCceeecc
Q 004015 316 VHLYRLQRGLTN-AVIQDISFSDDSNWIMISSS------RGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 316 ~~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~~~gg~~~~~~ 367 (779)
..|... .|..+ ..-+++|||||.+.|++|++ -|++.+||-.++.....+..
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 222222 23322 23579999999999999987 47899999988877766643
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-11 Score=139.20 Aligned_cols=106 Identities=13% Similarity=0.260 Sum_probs=87.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++++++||.|++||++..+-..+|.+-..+|..|+|+| .+.++|++.+.|. +.+||++.. .++
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp---------------~r~ 212 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQP---------------DRC 212 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCc---------------hhH
Confidence 45778999999999999999999999889999999999 5889999999987 899999863 112
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.++-..+...|.++.|+|+..|||+|+.|++|+||+.......
T Consensus 213 ~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 2222223346999999999999999999999999999864333
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=126.65 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=80.2
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
|..+..+|+|+-+|+++. +++.+++||.++|++|++++.- .+|+|+|.|+. +++|++....+.. ...+-
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~--------v~~~~ 415 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKS--------VKEHS 415 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcc--------ccccc
Confidence 344568999999999975 8999999999999999999964 48999999987 9999987541111 12232
Q ss_pred EEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~g 360 (779)
.++ | +..|.++.|+- -++|+|+..+.++|||+..+.
T Consensus 416 ~~~--~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 416 FKL--G----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccc--c----ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 333 2 25678888864 468889999999999997753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-09 Score=116.45 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=93.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+.+.|-+|++||+.++..+.++.+- .+++|+..+|...+||+||.|.+ |++||-+.+ .++ +. ..
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~-~gs---------~v-~~ 339 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH-IRLWDPRTG-DGS---------VV-SQ 339 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc-eeecCCCCC-CCc---------ee-EE
Confidence 4456788999999999999998887654 58999999999999999999977 999998875 111 11 22
Q ss_pred EeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCC-CceeeccCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLG-GSVNFQPTDANF 372 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~g-g~~~~~~H~~~~ 372 (779)
.| -|+. +.|..+.|+|...| |+++|.|+|+++||+.... ....+.+|.+.+
T Consensus 340 s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 340 SL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 33 3544 36999999996654 7899999999999998877 567888886544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=128.82 Aligned_cols=106 Identities=13% Similarity=0.284 Sum_probs=84.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..||.|.|||+.+...+.+|++|+..++||..++||+.|=||+-|.+ +|-||++++ +.+. ..
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlreg--------------rqlq---qh 589 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREG--------------RQLQ---QH 589 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhh--------------hhhh---hh
Confidence 46899999999999999999999999999999999999999999976 999999976 2211 11
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.-...|.++..+|.+.|||+|=..+-+.|-..... ....+.-|.
T Consensus 590 dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlhe 633 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHE 633 (705)
T ss_pred hhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccc
Confidence 12346999999999999999988887766555432 223444453
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=117.92 Aligned_cols=61 Identities=21% Similarity=0.461 Sum_probs=57.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++.++..||.|.|||..+..++.+|++|++.|+.|+..|+|++-++-+.|+. +++|++..+
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~G 159 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRG 159 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcC
Confidence 6778899999999999999999999999999999999999999999999976 999999876
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-11 Score=136.55 Aligned_cols=114 Identities=18% Similarity=0.399 Sum_probs=95.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+..+|+|++||+...+.+.++.+|...|..|.|+|-|.+.|++|.|+. +++||++.- | +.+.|
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd-~~iwD~Rk~--G----------c~~~~- 150 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD-LKIWDIRKK--G----------CSHTY- 150 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc-ceehhhhcc--C----------ceeee-
Confidence 455678899999999999999999999999999999999999999999976 899999842 1 12322
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+| +...|..+.|+|||+|++.+++|.+++|||+..+.-...|.+|...
T Consensus 151 --~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 151 --KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK 198 (825)
T ss_pred --cC-CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc
Confidence 34 3445888999999999999999999999999776666677777643
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.9e-11 Score=130.54 Aligned_cols=207 Identities=16% Similarity=0.197 Sum_probs=134.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
+.|--+|..|+.+.+.|.....|++|.| +.+++||++.+.+||||-. +..+++|+.+..+. -+-
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~-------------rLe 216 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVA-------------RLE 216 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchh-------------hhc
Confidence 6688999999999999999999999999 7899999999999999965 56677777653211 111
Q ss_pred ecC-ce-eEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 142 VGP-RW-LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 142 lgp-Rw-LAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+=| .| ||.++ ..|-+.-+. -|.|..|+. -....|+.. .+..
T Consensus 217 FLPyHfLL~~~~------~~G~L~Y~D----------VS~GklVa~-----------~~t~~G~~~---------vm~q- 259 (545)
T KOG1272|consen 217 FLPYHFLLVAAS------EAGFLKYQD----------VSTGKLVAS-----------IRTGAGRTD---------VMKQ- 259 (545)
T ss_pred ccchhheeeecc------cCCceEEEe----------echhhhhHH-----------HHccCCccc---------hhhc-
Confidence 111 11 11111 011110000 012222211 111112211 0111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
+| .|+++ -.+...|+|.+|.-.+.+++..+.+|.++|++|+++++|+|+||++.|.. ++|||++
T Consensus 260 --------NP---~NaVi----h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR 323 (545)
T KOG1272|consen 260 --------NP---YNAVI----HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLR 323 (545)
T ss_pred --------CC---ccceE----EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeec
Confidence 11 12222 23567899999999999999999999999999999999999999999965 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.. .++.+++. +.....++||.-|- ||.+ .-..|+||.=
T Consensus 324 ~~--------------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 324 NF--------------YQLHTYRT---PHPASNLSLSQKGL-LALS-YGDHVQIWKD 361 (545)
T ss_pred cc--------------cccceeec---CCCccccccccccc-eeee-cCCeeeeehh
Confidence 75 33444432 33467899998773 4433 3446888864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-09 Score=111.73 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=140.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..-.||++.+|+.+.++. ++..|..+.|+ +.+||. .++++|.||+..|+.....+... .+-
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---------------~~d 150 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---------------VED 150 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc---------------cCc
Confidence 557899999999988886 58899999997 778887 58999999999999988887521 011
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
| -||-+-. . +.
T Consensus 151 i----eWl~WHp-------------~--------------a~-------------------------------------- 161 (399)
T KOG0296|consen 151 I----EWLKWHP-------------R--------------AH-------------------------------------- 161 (399)
T ss_pred e----EEEEecc-------------c--------------cc--------------------------------------
Confidence 1 2554431 0 00
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.++.||.|-+|.+.++...+.|.+|..++++=+|.|||+.++++..||+ |++|+..
T Consensus 162 --------------------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~k 220 (399)
T KOG0296|consen 162 --------------------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPK 220 (399)
T ss_pred --------------------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecC
Confidence 1233567899999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
++ +.+.++.. .......+++++.++..+..|+.++.+++-....+.-.....
T Consensus 221 tg--------------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 221 TG--------------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred CC--------------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 86 33444421 112236789999999999999999999998776654333333
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-09 Score=105.56 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=83.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--C-----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--H-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--H-----t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
|+++++|.+|+.||++-..++.++.. | .+.|.+++.+|+|++||++-.|.. ..+|||+-+
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~------------ 263 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGG------------ 263 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCC------------
Confidence 45667899999999998888877652 2 257999999999999999999976 799999865
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+.+.+++. +.+.|.++.|||...|+.++|.|..|++=|+.
T Consensus 264 --r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 --RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred --ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 55666643 34679999999999999999999999999884
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=125.96 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=135.7
Q ss_pred CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEE
Q 004015 256 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 335 (779)
Q Consensus 256 ~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF 335 (779)
.+.+++..|++|.+.|..|+|+|++.+||++|.|.+ |.||+..+. ..+.++ +|+. ..|-.++|
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns-Viiwn~~tF--------------~~~~vl-~~H~-s~VKGvs~ 179 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS-VIIWNAKTF--------------ELLKVL-RGHQ-SLVKGVSW 179 (942)
T ss_pred ceeeEEEEEecCCCccceeccCCCccEEEEecccce-EEEEccccc--------------eeeeee-eccc-ccccceEE
Confidence 445788999999999999999999999999999987 899998764 344444 5654 45889999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCCCCCCCCCCccccCC----CCeeeee
Q 004015 336 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASG----PPVTLSV 411 (779)
Q Consensus 336 SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~----pp~~ls~ 411 (779)
.|-|+|||+-++|+|++||++.+.+..-.+..+ |.-.+..+.+++..|+ ||.+.|+.++ |--++..
T Consensus 180 DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p------f~~~~~~T~f~RlSWS----PDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 180 DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP------FEESPLTTFFLRLSWS----PDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred CCccCeeeeecCCceEEEEEcccceeeEeeccc------hhhCCCcceeeecccC----CCcCeecchhhccCCcceeEE
Confidence 999999999999999999999887666566544 3333455566666666 8999997654 2223444
Q ss_pred eEEeecC-C-----CCCCCcccCcccccc--------CCcCCCC--Cceee--------eeeccCCCCcccccCCc----
Q 004015 412 VSRIRNG-N-----NGWRGTVSGAAAAAT--------GRVSSLS--GAIAS--------SFHNCKGNSETYAAGSS---- 463 (779)
Q Consensus 412 v~ri~~~-~-----~~~~~~v~~~a~~~~--------g~~~~~~--g~~~~--------~~~~~~~~~~~~~~~~~---- 463 (779)
|.| +. . -|+.++|.=+++.+. |.+.... =+|+| +.++..-.-|++.-.+-
T Consensus 250 ieR--~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 250 IER--GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred Eec--CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 444 11 0 145666666666654 2221110 01221 22222111122211110
Q ss_pred ------ccccccEEEEccCccEEEEeeeecc
Q 004015 464 ------LKIKNHLLVFSPSGCMIQYALRIST 488 (779)
Q Consensus 464 ------~~~~~~l~V~~p~G~liqy~L~~~~ 488 (779)
...--.|||.+-+|.|.+..+...-
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 2355689999999999999888774
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=117.42 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=128.4
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc----Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
+.++|++||..||+.+..++. +..+..|+|. .+ ++..+.|++|++||+++......+..-..+ +.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-~~-------- 118 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-GT-------- 118 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-CC--------
Confidence 447899999999999999987 6778888883 34 445578999999999988765555432110 00
Q ss_pred cccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 136 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 136 ~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
.+..++ ...+. . ++..|
T Consensus 119 ~f~~ld-------~nck~---------------------------~----------------ii~~G------------- 135 (376)
T KOG1188|consen 119 PFICLD-------LNCKK---------------------------N----------------IIACG------------- 135 (376)
T ss_pred cceEee-------ccCcC---------------------------C----------------eEEec-------------
Confidence 111111 11000 0 00000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE-EEE-eccCCCCeEEEEEcCC-CCEEEEEeCCCCE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQ-FRAHKSPISALCFDPS-GILLVTASVQGHN 292 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~-v~~-f~aHt~~IsaLaFSPd-G~lLATaS~DGt~ 292 (779)
+. -...+-.|.+||++..+. +.. +..|...|++|+|.|+ -.+|+|||.||-
T Consensus 136 ------------------------tE-~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL- 189 (376)
T KOG1188|consen 136 ------------------------TE-LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL- 189 (376)
T ss_pred ------------------------cc-cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-
Confidence 00 012345789999998765 555 4599999999999995 679999999996
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCCceee
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
|+|||+... . .+..+.+ .+..| +.|-++.|..++ +.|.+-+...+..+|+++.......+
T Consensus 190 vnlfD~~~d-~-------EeDaL~~--viN~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 190 VNLFDTKKD-N-------EEDALLH--VINHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred EEeeecCCC-c-------chhhHHH--hhccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 999999753 1 0112222 22222 348899999888 34778889999999999987654444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=116.87 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=85.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+|.|.-||+.+.+++..+..-.++|.+++.+|.++.|+.+++||. +..+++.++ ...+-..|.|
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~------------~I~~~r~l~r 152 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPD------------KITYKRSLMR 152 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCce-EEEEecCCc------------eEEEEeeccc
Confidence 345789999999999999999999999999999999999999999994 788888775 1122122222
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..++|.+++|+|++..||+|+.||.|+|||+.....
T Consensus 153 --q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 153 --QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred --ccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 246799999999999999999999999999987643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=124.88 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=120.9
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEEc---Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
...|||||++.+.+|++++.++.-|.+|+|+ .+ +|..++|++|+||++...+....-......
T Consensus 388 MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI------------- 454 (712)
T KOG0283|consen 388 MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI------------- 454 (712)
T ss_pred ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhh-------------
Confidence 4699999999999999999999999999996 44 455689999999999876544332211000
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.| +.| .
T Consensus 455 --TA-----vcy-------------------------------------------------------------------~ 460 (712)
T KOG0283|consen 455 --TA-----VCY-------------------------------------------------------------------S 460 (712)
T ss_pred --ee-----EEe-------------------------------------------------------------------c
Confidence 00 011 1
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec---------cCCCCeEEEEEcCCCC--EEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---------AHKSPISALCFDPSGI--LLVTA 286 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~---------aHt~~IsaLaFSPdG~--lLATa 286 (779)
|+|.+ .+-+...|.+++|+....+.+..+. .|. .|+.+.|.|.-. +|+|
T Consensus 461 PdGk~------------------avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 461 PDGKG------------------AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred cCCce------------------EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe-
Confidence 22211 1123467889999988877665543 123 799999998533 6665
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
|.|.+ |+|||.... .+.+.++ |..+.. =...+|+.||++|++++.|.-|+||++....
T Consensus 521 SnDSr-IRI~d~~~~------------~lv~KfK---G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 SNDSR-IRIYDGRDK------------DLVHKFK---GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCc-eEEEeccch------------hhhhhhc---ccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 56666 999999653 2233332 322222 2478999999999999999999999996653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-09 Score=110.55 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=124.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+.+++|||.+++....-.+..+|..++|= -..|+. +.|++|+.||.+.-..+.++.--..++.- =..
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~-------Dv~ 165 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA-------DVL 165 (347)
T ss_pred CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh-------hcc
Confidence 578999999999876666678999999992 234454 79999999999998888887531111110 012
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.||++ +|.+.+.+++.+.. ++.+.- |.+.+-+ +...+ |-+..
T Consensus 166 ~pm~v----Vata~r~i~vynL~------------------n~~te~-------k~~~SpL--------k~Q~R-~va~f 207 (347)
T KOG0647|consen 166 YPMAV----VATAERHIAVYNLE------------------NPPTEF-------KRIESPL--------KWQTR-CVACF 207 (347)
T ss_pred CceeE----EEecCCcEEEEEcC------------------CCcchh-------hhhcCcc--------cceee-EEEEE
Confidence 34443 34444433332110 000000 0000000 00000 00011
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC--cEEEEeccCCC---------CeEEEEEcCCCCEEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKS---------PISALCFDPSGILLVTA 286 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~--~~v~~f~aHt~---------~IsaLaFSPdG~lLATa 286 (779)
++.+ .++-+.-.|.|.|..+..+ +.-.+|++|.. +|+.|+|.|.-..|||+
T Consensus 208 ~d~~------------------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 208 QDKD------------------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred ecCC------------------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEe
Confidence 1111 1233456788888888775 55567889973 57889999998899999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
+.||+ +..||-... ..|....+ ....|.+.+|+.+|.++|.+.
T Consensus 270 GsDGt-f~FWDkdar--------------~kLk~s~~--~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 270 GSDGT-FSFWDKDAR--------------TKLKTSET--HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCCce-EEEecchhh--------------hhhhccCc--CCCccceeEecCCCCEEEEEe
Confidence 99998 999996542 22332222 245699999999999998774
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=123.83 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..+|.|.|||..+.+.+..+.. |...|.+|+|+ +..|.+|+.+|. |.++|++.. .++..
T Consensus 233 avG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~-I~~~dvR~~--------------~~~~~ 295 (484)
T KOG0305|consen 233 AVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGK-ILNHDVRIS--------------QHVVS 295 (484)
T ss_pred EEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCc-EEEEEEecc--------------hhhhh
Confidence 3445679999999999999999998 99999999999 778999999998 899999864 11111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
..+++ ...|-.+.|++|+++||+|+.|+.++|||.........+..|...+
T Consensus 296 ~~~~H-~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 296 TLQGH-RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred hhhcc-cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 12333 2358899999999999999999999999998777778888886543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-09 Score=119.83 Aligned_cols=234 Identities=19% Similarity=0.275 Sum_probs=145.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCC---EEE-EEE--c--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP---IYS-VRC--S--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~---V~s-V~~--s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++++||+-+.++++.+..|..+ |.. +++ + .++++.+.|+.|.+|...+.+.+++|.+|..-. |+-+ +
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls----~ 109 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLS----I 109 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce-eeee----c
Confidence 7799999999998887666322 222 444 2 456777899999999999999999999996411 2100 1
Q ss_pred cccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeec-----------ccccchhceeeecCCc
Q 004015 136 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK-----------ESSKHLAAGIVNLGDL 204 (779)
Q Consensus 136 ~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~-----------~~sK~La~Gl~~lGd~ 204 (779)
...+.-++..|= ...++|..|.+.-. + .|...+.||. .+.|.+. .+.|+.
T Consensus 110 ~~~~~~iSgSWD----~TakvW~~~~l~~~-l-----------~gH~asVWAv~~l~e~~~vTgsaDKtIk---lWk~~~ 170 (745)
T KOG0301|consen 110 GEDGTLISGSWD----STAKVWRIGELVYS-L-----------QGHTASVWAVASLPENTYVTGSADKTIK---LWKGGT 170 (745)
T ss_pred CCcCceEecccc----cceEEecchhhhcc-c-----------CCcchheeeeeecCCCcEEeccCcceee---eccCCc
Confidence 111121233331 12345533211000 0 0111111111 1111111 122222
Q ss_pred cccccccccccccCCCcCccccccCCCCCCCc--c-CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC
Q 004015 205 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGT--V-NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 281 (779)
Q Consensus 205 ~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~--v-~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~ 281 (779)
..++++.+..- +.|+ + ..+|.+.++||.|+.||+ +++++..+.+|+.-|.+++..+++.
T Consensus 171 ~l~tf~gHtD~-----------------VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 171 LLKTFSGHTDC-----------------VRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred hhhhhccchhh-----------------eeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 22333222110 1111 1 337888999999999999 7889999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 282 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+++|+++|++ ++||+... +....++. + ..||++++=++|. |++|++||.|+||...+.
T Consensus 233 ~Ivs~gEDrt-lriW~~~e--------------~~q~I~lP-t---tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 233 LIVSTGEDRT-LRIWKKDE--------------CVQVITLP-T---TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEecCCce-EEEeecCc--------------eEEEEecC-c---cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999999998 89999763 23333432 1 2499999988887 569999999999998754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-10 Score=125.22 Aligned_cols=103 Identities=17% Similarity=0.343 Sum_probs=91.6
Q ss_pred cccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.++..|+.|+||++.. ++++.+|.+|..+|.+++|+++|+.++|+|.|+. |++||+.+| +.+
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~-lKlwDtETG--------------~~~ 293 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF-LKLWDTETG--------------QVL 293 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee-eeeeccccc--------------eEE
Confidence 346778899999999987 8999999999999999999999999999999987 899999987 556
Q ss_pred EEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+++.+ ..++|+.|.||+ +.|.+|..|+.|+.||+....
T Consensus 294 ~~f~~~---~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 294 SRFHLD---KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred EEEecC---CCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 666544 458899999999 889999999999999998764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-10 Score=130.37 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=115.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..+-..|.|++||.+-+.++..|..|.+||..|+|.|++-++++|++|- .|+||+.... +++++|
T Consensus 25 LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDy-kIkVWnYk~r--------------rclftL 89 (1202)
T KOG0292|consen 25 LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY-KIKVWNYKTR--------------RCLFTL 89 (1202)
T ss_pred EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCcc-EEEEEecccc--------------eehhhh
Confidence 3445789999999999999999999999999999999999999999995 4999998764 778888
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC-------CCCccC--CCcCCcceecCCCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA-------NFTTKH--GAMAKSGVRWPPNLGL 392 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~-------~~~~~~--~~~~~~~~r~~~~s~l 392 (779)
. |+- --|..+.|.+.=-||.++|+|-||+||+..+..+...+++|.- .+.+.. ..+++..+|-|-.++|
T Consensus 90 ~-GHl-DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 90 L-GHL-DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred c-ccc-ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 4 543 2499999999999999999999999999999999999999863 121111 6678999999999988
Q ss_pred CC
Q 004015 393 QM 394 (779)
Q Consensus 393 ~~ 394 (779)
..
T Consensus 168 Rk 169 (1202)
T KOG0292|consen 168 RK 169 (1202)
T ss_pred hc
Confidence 63
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=117.77 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+.+|.+.+|..+..+.+|-.+|+||.|+-||.+|+|||.||. |++|++-.-.. ++...+...++.+. ++
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~-----a~~~~~~~p~~~f~-~H 173 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVS-----ADNDHSVKPLHIFS-DH 173 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeecc-----cccCCCccceeeec-cC
Confidence 6799999999999999999999999999999999999999999997 89998765311 11122345556653 22
Q ss_pred CcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 326 TNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 326 t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
+ -.|+|+-..+ -..+|+++|.|.||++||+..+.-..+
T Consensus 174 t-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 174 T-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred c-ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence 2 3488876554 466899999999999999987643333
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=106.68 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=126.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+.|+.+|+.+++...-..+..+|+.|..+ +.+|+.+.|++|++||.+...+..++..
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~------------------- 134 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ------------------- 134 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-------------------
Confidence 478999999999887777788899999986 6677889999999999987222222211
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. ..|+++...
T Consensus 135 ----------------------------------------~k--kVy~~~v~g--------------------------- 145 (323)
T KOG1036|consen 135 ----------------------------------------GK--KVYCMDVSG--------------------------- 145 (323)
T ss_pred ----------------------------------------Cc--eEEEEeccC---------------------------
Confidence 00 011111100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
..++.+..+-.|.+||+++.....+.+ .-+-.+.||++-|++.=.|.+|.||+ |-|=.
T Consensus 146 -------------------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~ 205 (323)
T KOG1036|consen 146 -------------------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEY 205 (323)
T ss_pred -------------------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEc
Confidence 012234556789999999876544333 33468999999999988999999998 55544
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCc-----ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~-----a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
+.+. ... .+....++.||-... .+|.+|+|+|--+.||||+.||-|.+||+.+......+.
T Consensus 206 ~d~s-~~~-------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 206 FDDS-EEA-------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred cCCc-hHH-------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 4332 001 012233344443221 238899999999999999999999999998876655543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=109.04 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.|..+..-||+++||||+.||+ ||||.-++..+ ..+.++++ +.|+++|||||+..+|++|.|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~p------------LAVLkyHs----agvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNP------------LAVLKYHS----AGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEeccCCc------------hhhhhhhh----cceeEEEeCCCCchhhhccCCc
Confidence 4677889999999999999998 89998876510 11223333 4599999999999999999999
Q ss_pred eEEEEec
Q 004015 350 TSHLFAI 356 (779)
Q Consensus 350 TVhIwdl 356 (779)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-08 Score=113.89 Aligned_cols=188 Identities=19% Similarity=0.275 Sum_probs=129.6
Q ss_pred CEEEEEECCCCcEEEE-EeC--CCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHM-LKF--RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~t-Lkf--~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
+.|-||+++.+=+... |.. ...|.+++|. .|++.+++++.|.-||+.+++.++.+.... ..+.
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~g------------g~IW 114 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNG------------GAIW 114 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCC------------ccee
Confidence 6699999988644332 333 5789999995 789999999999999999999888774321 0111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.||+. |. +
T Consensus 115 siai~--------------------p~--------------~-------------------------------------- 122 (691)
T KOG2048|consen 115 SIAIN--------------------PE--------------N-------------------------------------- 122 (691)
T ss_pred EEEeC--------------------Cc--------------c--------------------------------------
Confidence 22211 00 0
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v--~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
..++-++.+|.+..++...+... ..|..-++.|.+|+|+|+|+.||+|+.||. |++|
T Consensus 123 --------------------~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriw 181 (691)
T KOG2048|consen 123 --------------------TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIW 181 (691)
T ss_pred --------------------ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-EEEE
Confidence 00112356676666666655443 335566789999999999999999999996 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEE-----EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLY-----RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~-----~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
|+..+ ...++. ++.++ ...-|+++.|=.|+. ||+|.+.|+|.+||-..+.-...+..|..
T Consensus 182 d~~~~------------~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 182 DVKSG------------QTLHIITMQLDRLSKR-EPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EcCCC------------ceEEEeeecccccccC-CceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 99875 122322 22222 123389999987775 78999999999999988766666666654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-08 Score=102.66 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=82.6
Q ss_pred cccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG----~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
.|+++.-|..|+||+..+++ .-.+|.+|++-|..+++.|.- .+||++|.||+ +.||..... .++ +
T Consensus 177 rlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e-~e~-----w-- 247 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE-YEP-----W-- 247 (299)
T ss_pred eeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc-cCc-----c--
Confidence 56788889999999999863 345689999999999999974 47999999998 789986532 000 0
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
....|..+ +..++.++||..|.+||++..|..|.+|.=+..|.
T Consensus 248 k~tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 248 KKTLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cccccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 01112121 23489999999999999999999999998766543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-08 Score=112.15 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+..|+.+|+.++++|+..|.+ |+||++..+ ....+++-.+++. .....+...|.|-|||++.+|+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrn-irif~i~sg------------Kq~k~FKgs~~~e-G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRN-IRIFDIESG------------KQVKSFKGSRDHE-GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccc-eEEEecccc------------ceeeeecccccCC-CceEEEEECCCccEEEEeecCC
Confidence 4666777777788888888865 888888765 2233333334332 2356899999999999999999
Q ss_pred eEEEEecCCCCCceeeccCCCCCC
Q 004015 350 TSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 350 TVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|+-+||+..+.+.....+|...+.
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchhee
Confidence 999999999999989999986554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-09 Score=113.89 Aligned_cols=102 Identities=22% Similarity=0.358 Sum_probs=85.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..-|.|+|.|+.++++...+.+|..+|+.|+|.|+ -+||++||.|- .|++|+|.+. .++..
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--------------~Cv~V 173 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--------------VCVAV 173 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--------------eEEEE
Confidence 33446799999999999999999999999999999996 57999999994 5999999986 33333
Q ss_pred e--ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 321 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 321 l--~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+ ..|+ ...|.++.|++||.+||+++.|.++++|+|+..
T Consensus 174 fGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 174 FGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ecccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3 1222 224999999999999999999999999999853
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=119.95 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCCeEEEEECCCCc------EEEE--eccC---CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 246 NVGMVIVRDIVSKN------VIAQ--FRAH---KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 246 ~dG~V~VwDl~s~~------~v~~--f~aH---t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.|+.|+|||++... +... +.-| .-.+++|..+..|++|.....|++ |..|++...-..+
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~sP--------- 307 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSISP--------- 307 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCcCc---------
Confidence 58999999999753 2222 2233 236889999999998877777877 8999987651111
Q ss_pred eeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 315 YVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
..++. |..... -..-+.|||+.+|++|+.|..+.||.+......+.+ .+|+..+.
T Consensus 308 -~~~~s---g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 308 -VAEFS---GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT 364 (720)
T ss_pred -hhhcc---CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE
Confidence 00111 111111 123457999999999999999999999988776655 67754443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-08 Score=108.41 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=75.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.|.|.-..+++.+.+|+- .+.|+.++|+.||+.|..++.+|. |.+||+... .+.+.+.-..+
T Consensus 322 G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~------------~~~~rf~D~G~ 387 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN------------SCLHRFVDDGS 387 (514)
T ss_pred ccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc------------ceEEEEeecCc
Confidence 3457788888888887777763 468999999999999999999996 899999864 23443433222
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.. =+++|.|++++|||+||..|.|-|||.+.
T Consensus 388 v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 388 VH---GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence 21 36899999999999999999999999765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=114.23 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=95.6
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-CCCccC
Q 004015 241 FPDADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACD 310 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-~~s~~~ 310 (779)
++++..|..|+||-+... +.+..+..|+.+|+++.|+|+|.+||+|+++|. |.+|........ ....++
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCccccchhh
Confidence 456777889999988642 245677899999999999999999999999987 899975521000 000111
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.....+.+.+..||+ ...|++++|+||+.++++++.|.++++||++.+.-...+..|..-
T Consensus 108 ~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred hCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 122335555556774 356999999999999999999999999999987666666667433
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-08 Score=115.66 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=121.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|++.++.+....+.++ ++.+|..|.|+ +.+||+ +.+++|+|||+.++.+.+++..-...... ..+-
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~--------~~s~ 189 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF--------ILSR 189 (933)
T ss_pred eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc--------cccc
Confidence 679999999988888776 58999999995 678887 67999999999999999888542110000 0000
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+. .-+|+ +| +
T Consensus 190 i~---~~~aW-------------~P------------------------------------------------------k 199 (933)
T KOG1274|consen 190 IC---TRLAW-------------HP------------------------------------------------------K 199 (933)
T ss_pred ee---eeeee-------------cC------------------------------------------------------C
Confidence 00 00000 01 1
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+++++....++.|++|+..+......++ -|...+++++|||.|+|||+++.+|. |.|||
T Consensus 200 ------------------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWn 260 (933)
T KOG1274|consen 200 ------------------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWN 260 (933)
T ss_pred ------------------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEe
Confidence 1123334567899999999998888877 33344999999999999999999997 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+.++ .+| .+. ..|.+++|-|++.-+-.-..-|+.-+|
T Consensus 261 v~t~-------------~~~--~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTH-------------ERH--EFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccc-------------hhc--ccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 9864 011 111 238899999999887666665555444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=109.21 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=80.8
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC--CCCCc----------cCCC--
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSA----------CDAG-- 312 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~--g~~s~----------~~~~-- 312 (779)
..+.+||+.++.....+. +|...+++.+|.|||..+++||.|++ |..||+..... |..-. .+..
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~-i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT-IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc-EEEecCCcchhhcccccccceeEEEEEcCCCcEE
Confidence 458999999998877776 56689999999999999999999987 78898764311 11000 0000
Q ss_pred -----CceeEEEE----eecCCC--cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 313 -----TSYVHLYR----LQRGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 313 -----~s~~~l~~----l~rG~t--~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
...-.+|. +.||.. ..+|.+++.|.|++++.+.-.+.++|+||+....-...+.+|
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 00011111 123321 234889999999999999999999999999764333333444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=100.42 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC-CC---EEEEEeCCCCEEEEEeCCCCCC----CCCCccCCC
Q 004015 245 DNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS-GI---LLVTASVQGHNINIFKIIPGIL----GTSSACDAG 312 (779)
Q Consensus 245 ~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd-G~---lLATaS~DGt~I~Vwdi~~~~~----g~~s~~~~~ 312 (779)
..-+.++||..... ..++++..|+.+|.+|+|.|+ |+ +||+|+.|| |+||.+..... ...-+.+..
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCc
Confidence 34468999987653 356788899999999999997 43 899999999 89999985310 000001111
Q ss_pred C--ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 313 T--SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~--s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ .++.+-. -+.++.+|+.++|.-.|..|+++++||+|++|..+-
T Consensus 274 ~~l~v~~vs~--~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 274 TDLPVEKVSE--LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccceEEeee--ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 1 1222222 234556799999999999999999999999998753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-07 Score=102.78 Aligned_cols=259 Identities=13% Similarity=0.170 Sum_probs=147.2
Q ss_pred cCCCCCCCc---CCCEEEEEECCCCcEEEEEe-C----CCCEEEEEE--cCcEEEEEeCCeEEEEeCCCCcEEEEEecCC
Q 004015 53 YHDLGNGSS---VPTVVHFYSLRSQSYVHMLK-F----RSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNP 122 (779)
Q Consensus 53 ~~~~~~~~~---~~~tVrIWDL~Tge~V~tLk-f----~s~V~sV~~--s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p 122 (779)
+|+.+...- -.+-+.||+++++..++.-. | +..|.+|+| ++++|..-.++.|.||+..+.+..++...|+
T Consensus 208 FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 208 FHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred eccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC
Confidence 566543322 34679999999999888764 3 456999999 5788888888999999999988877776653
Q ss_pred cccCCCCCCCccccccceeecC-ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhcee-
Q 004015 123 IVMGHPSAGGIGIGYGPLAVGP-RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI- 198 (779)
Q Consensus 123 ~~~~~p~s~~~~~~~~piAlgp-RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl- 198 (779)
.- + +.-+.+.. ..|. ++++ ++.|+.. ..+ +. .-.+- . +...-+.++.|-
T Consensus 288 gg----------v-~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k--~r----------~~elP-e-~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 288 GG----------V-FSLCMLRDGTLLS-GGKDRKIILWDDN-YRK--LR----------ETELP-E-QFGPIRTVAEGKG 340 (626)
T ss_pred Cc----------e-EEEEEecCccEee-cCccceEEecccc-ccc--cc----------cccCc-h-hcCCeeEEecCCC
Confidence 20 1 01111111 2222 3332 3333210 000 00 00000 0 000011122110
Q ss_pred -eecCCccccccccccccccCCCcCccccccCCCCCCCcc----CCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEE
Q 004015 199 -VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV----NGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 273 (779)
Q Consensus 199 -~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v----~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~Isa 273 (779)
..+|-..-..|... +.++..-......+.. =|+. ...+++..+|+.|+||+ ..+++.+.. -..++.|
T Consensus 341 di~vGTtrN~iL~Gt----~~~~f~~~v~gh~del-wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 341 DILVGTTRNFILQGT----LENGFTLTVQGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAEC 412 (626)
T ss_pred cEEEeeccceEEEee----ecCCceEEEEecccce-eeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeE
Confidence 11111100000000 0010000000000000 0000 12346677899999999 555554433 2468999
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 274 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 274 LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
+.|+|.| .||.|...|+ -.|.|+.+. .+..++.- +.++..++|||||.+||+||.|+.|+|
T Consensus 413 ~~fhpsg-~va~Gt~~G~-w~V~d~e~~---------------~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGR-WFVLDTETQ---------------DLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred eeccCcc-eEEEeeccce-EEEEecccc---------------eeEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 9999999 9999999998 578887763 34444433 567999999999999999999999999
Q ss_pred EecCCCCCceee
Q 004015 354 FAINPLGGSVNF 365 (779)
Q Consensus 354 wdl~~~gg~~~~ 365 (779)
|.+...|..+..
T Consensus 474 y~Vs~~g~~y~r 485 (626)
T KOG2106|consen 474 YRVSANGRKYSR 485 (626)
T ss_pred EEECCCCcEEEE
Confidence 999998877765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-09 Score=111.02 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=90.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-----CCCc--c--C
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSSA--C--D 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-----~~s~--~--~ 310 (779)
+++.++.+|.|.|||+.+..+-..|.||..||++|+||+||++|+|+|.|- .|++||+..+..- ++.. + .
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-si~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-SIKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-eeEEEeccCCCceeEEEccCccceeeec
Confidence 467788999999999999998899999999999999999999999999996 5999999876210 0000 0 0
Q ss_pred CCCcee----------EEEEeec-----------CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 311 AGTSYV----------HLYRLQR-----------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~----------~l~~l~r-----------G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+...-. .+..+.- |..+..-.+..|.+-|+|+.+|+++|.++|++.++..+...++.-
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 000000 0001100 000000012348888999999999999999999999887777643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-09 Score=113.13 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=88.8
Q ss_pred cccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 240 HFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~---v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.+.+++-.+.|++|...++.- ...|.+|+.+|-.|+|||.- ..||+||.||+ |+|||++.++..+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~---------- 294 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKA---------- 294 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccc----------
Confidence 345666778899999888653 24567899999999999974 48999999997 9999999752111
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc---eeeccCCCCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS---VNFQPTDANFT 373 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~---~~~~~H~~~~~ 373 (779)
.+.+ ..+.+.|.-|+|+.+-.+||+|++|||++||||...... ..|+-|...+.
T Consensus 295 -~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 295 -AVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred -eeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 1222 123346999999999999999999999999999775433 35566644443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-08 Score=101.86 Aligned_cols=135 Identities=18% Similarity=0.266 Sum_probs=100.1
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc-----CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-----SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-----~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++||+||..|-+.+-.++|+..||+-+++ .-+||++. +-+|++.|+.++.+-++|.+|..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------- 189 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------- 189 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-------------
Confidence 589999999999999999999999998885 34677765 45999999999999999988732
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+.+|+. +. |. ...
T Consensus 190 -~vlaV~-----Ws-------------p~--------------~e~---------------------------------- 202 (397)
T KOG4283|consen 190 -GVLAVE-----WS-------------PS--------------SEW---------------------------------- 202 (397)
T ss_pred -ceEEEE-----ec-------------cC--------------cee----------------------------------
Confidence 223321 10 00 000
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC-c--------------EEEEeccCCCCeEEEEEcCCCC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-N--------------VIAQFRAHKSPISALCFDPSGI 281 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~-~--------------~v~~f~aHt~~IsaLaFSPdG~ 281 (779)
-++++..||.|++||++.- . .+.+=.+|.+.|..++|+.||.
T Consensus 203 -----------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 203 -----------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred -----------------------EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 0233456778888888642 1 1222348889999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCC
Q 004015 282 LLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 282 lLATaS~DGt~I~Vwdi~~~ 301 (779)
+|++.+.|.+ +++|+...+
T Consensus 260 ~l~~~gtd~r-~r~wn~~~G 278 (397)
T KOG4283|consen 260 YLASCGTDDR-IRVWNMESG 278 (397)
T ss_pred hhhhccCccc-eEEeecccC
Confidence 9999999977 899998766
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=110.47 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=91.4
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..+-.|+||............+|..+|+.+...|+|.||++||.||+ .-..|+..+ ..+....-
T Consensus 279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~-w~Fsd~~~g--------------~~lt~vs~ 343 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT-WAFSDISSG--------------SQLTVVSD 343 (506)
T ss_pred cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCce-EEEEEccCC--------------cEEEEEee
Confidence 445678999999888888888999999999999999999999999998 566677765 22222211
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
-...-.+.+++|.|||-+|++|+.||.++|||+........|-+|+..+
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 1111238999999999999999999999999999988777888886543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-06 Score=91.84 Aligned_cols=184 Identities=18% Similarity=0.298 Sum_probs=129.5
Q ss_pred CCEEEEEECCC-CcEEEEEeC-CCCEEEEEEc--CcEEEEEe--CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~T-ge~V~tLkf-~s~V~sV~~s--~rlLaVs~--d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
...+++||..+ ...+..+.. ...|..+.|. .+.++++. ++.+++||+.+.+.+.++..|...
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 46899999998 677777665 6788889995 44555543 899999999997777777553110
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+ ..+++.. ++..
T Consensus 201 ---v----~~~~~~~---------------------------~~~~---------------------------------- 212 (466)
T COG2319 201 ---V----SSLAFSP---------------------------DGGL---------------------------------- 212 (466)
T ss_pred ---e----EEEEEcC---------------------------Ccce----------------------------------
Confidence 0 0112210 0000
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+.+...++.|++||...+..+. .+..|...+ ...|+|++.++++++.|+. +++
T Consensus 213 -----------------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~ 267 (466)
T COG2319 213 -----------------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRL 267 (466)
T ss_pred -----------------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEE
Confidence 01112457889999999888888 699999886 4489999999999999987 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
|++... ...+..+ .++ ...|.+++|+|++..+++++.|+++++|++..........
T Consensus 268 ~~~~~~-------------~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 268 WDLRSS-------------SSLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred eeecCC-------------CcEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 999864 1122333 232 3459999999999999999999999999887765444443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-07 Score=97.08 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=137.7
Q ss_pred CEEEEEECCC-CcEEEE--EeCCCCEEEEEEc---CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRS-QSYVHM--LKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~T-ge~V~t--Lkf~s~V~sV~~s---~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++||+|++.. |..+-. ..+..+|.+++|+ .++.+.+.|+++++||+.+.+ ..++..|..+.-++ ..+
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~------~wv 122 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTC------HWV 122 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEE------EEe
Confidence 7899999976 555543 2358999999996 345556889999999999996 44555553221110 000
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.++- ...|+.++ -.+++..|-...++.++. ..|-|.. |+.++.
T Consensus 123 ~~~~--~~cl~TGS---------------------------WDKTlKfWD~R~~~pv~t--~~LPeRv------Ya~Dv~ 165 (347)
T KOG0647|consen 123 PGMN--YQCLVTGS---------------------------WDKTLKFWDTRSSNPVAT--LQLPERV------YAADVL 165 (347)
T ss_pred cCCC--cceeEecc---------------------------cccceeecccCCCCeeee--eecccee------eehhcc
Confidence 0000 01223322 122222222222221110 0111111 111110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt----~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
...++.+..+..|.+|.+++.. ..|+.+. -.+.||+.-+|....|.||..|+ +
T Consensus 166 --------------------~pm~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v 222 (347)
T KOG0647|consen 166 --------------------YPMAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-V 222 (347)
T ss_pred --------------------CceeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-E
Confidence 0011223456679999998653 2344444 35889999898888899999998 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCC--cc---cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT--NA---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t--~a---~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
-|..+....+ .....++.||... .. .|.+|+|.|.-..|+|+++|||.-.||-.......+...|
T Consensus 223 ~iq~id~~~~----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 223 AIQYIDDPNP----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred EEEecCCCCc----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 8888876411 1234456666311 11 2789999999999999999999999998776666565666
Q ss_pred CCCCC
Q 004015 369 DANFT 373 (779)
Q Consensus 369 ~~~~~ 373 (779)
...++
T Consensus 293 ~qpIt 297 (347)
T KOG0647|consen 293 PQPIT 297 (347)
T ss_pred CCccc
Confidence 55444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=100.72 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=77.7
Q ss_pred CeEEEEECCC--------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-CCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-GTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s--------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-g~~s~~~~~~s~~~l 318 (779)
-.|+||.+.= -..+..+++|...|.+++|||+.+.++|+|.||+ ++|||+.-... +. --
T Consensus 250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~q-----------Dp 317 (420)
T KOG2096|consen 250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQ-----------DP 317 (420)
T ss_pred CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCC-----------Cc
Confidence 4577787531 1345678899999999999999999999999998 89999864310 00 00
Q ss_pred EEeecC------CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 319 YRLQRG------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 319 ~~l~rG------~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
+.|+.| .... -..++.||.|+.||.+. ..++++|.-+++....++ +.|...+.
T Consensus 318 k~Lk~g~~pl~aag~~-p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSE-PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred hHhhcCCcchhhcCCC-ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCcee
Confidence 122222 1112 23799999999988764 558999999886666666 46654444
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=103.61 Aligned_cols=129 Identities=18% Similarity=0.357 Sum_probs=96.2
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSP--dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++.+.|++|+|+.+++. .++.+|.+|.+||..++|-. -|.+||++|.||+ |.||.-..+ .++
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g-~w~--------- 93 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENG-RWT--------- 93 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCC-chh---------
Confidence 4567788999999999865 47899999999999999977 7999999999998 899986654 222
Q ss_pred eeEEEEeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCcee---eccCCCCCCccCCCcCCcceecCCC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN---FQPTDANFTTKHGAMAKSGVRWPPN 389 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~---~~~H~~~~~~~~~~~~~~~~r~~~~ 389 (779)
.++. +..+.+.|.+|+|.| -|-.||++++||+|.|+++...|+-.+ +..|..... .+.|.|.
T Consensus 94 --k~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn---------sVswapa 160 (299)
T KOG1332|consen 94 --KAYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN---------SVSWAPA 160 (299)
T ss_pred --hhhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc---------eeeecCc
Confidence 1222 223345699999988 467899999999999999988744322 245643333 3466665
Q ss_pred CCC
Q 004015 390 LGL 392 (779)
Q Consensus 390 s~l 392 (779)
+..
T Consensus 161 ~~~ 163 (299)
T KOG1332|consen 161 SAP 163 (299)
T ss_pred CCC
Confidence 533
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-07 Score=102.70 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=79.0
Q ss_pred ccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~-v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.++.-|...+||++++.- ...+.-|...|+.|+|+|- -.+|||||.|++ .+|||++.-.... + -.++.
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l~~K~--------s-p~lst 365 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQLRGKA--------S-PFLST 365 (498)
T ss_pred EeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhhcCCC--------C-cceec
Confidence 345557889999998654 7778889999999999995 568999999998 7999998641111 0 02333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+. +...|.+++|||++--|++.+.|.+|+|||..
T Consensus 366 ~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 366 LP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 32 12349999999998889999999999999995
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=106.74 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=92.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~--lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+++++.|-+|+|||+.+...+..+-.|.+.|+||.|.+.-. .|++|++||+ |.||+..+. ..+
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~-i~iw~~~~W--------------~~~ 120 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH-IIIWRVGSW--------------ELL 120 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc-EEEEEcCCe--------------EEe
Confidence 45678899999999999999999999999999999999876 8999999998 899998764 344
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+ +++. ++|++|+..|.++.-.+.+.|++++.|++-.+..-...
T Consensus 121 ~sl-K~H~-~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 121 KSL-KAHK-GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eee-cccc-cccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 444 5554 44999999999999999999999999999876655444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-07 Score=101.52 Aligned_cols=99 Identities=18% Similarity=0.314 Sum_probs=78.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++-+...|.-.|.|..+...+..-.. ..+|++++|+|||.+||.||.|+. |.||.+... | .....+
T Consensus 420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~--g---------~~y~r~ 486 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN--G---------RKYSRV 486 (626)
T ss_pred eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC--C---------cEEEEe
Confidence 455666778899999999655544444 889999999999999999999987 899998753 1 112223
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
...+| +.|+-+.||+|++||.+-|.|-.+..|
T Consensus 487 ~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 487 GKCSG---SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eeecC---ceeEEeeecCCCceEEeccCceEEEEE
Confidence 33344 679999999999999999999999999
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-06 Score=90.75 Aligned_cols=99 Identities=25% Similarity=0.440 Sum_probs=77.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.++.+++||+.....+..+..|...|.+++|+|+|. ++++++.|+. |++||...+ ..+.....+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~~--------------~~~~~~~~~ 240 (466)
T COG2319 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTG--------------KLLRSTLSG 240 (466)
T ss_pred CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCCC--------------cEEeeecCC
Confidence 378999999999999999999999999999999998 6666688987 789987643 222212233
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+.. .+ ..+|+|++.++++++.|+++++|++.....
T Consensus 241 ~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 241 HSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 322 22 228999999999999999999999987655
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=103.23 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=77.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+.-|.+++||++.. ...-.|.+|.+.|-|++|=.+- .++|||.+|. |-+|++..-.+ ..++.+..
T Consensus 304 GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkp------------lf~~~~AH 368 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKP------------LFTSRLAH 368 (479)
T ss_pred ccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCc------------eeEeeccc
Confidence 34789999999944 4455788999999999997665 6899999997 89999865311 11111111
Q ss_pred CCC--------cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 324 GLT--------NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 324 G~t--------~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|.. +..|.+++-.|.+..+|+||-+|.|++|.+++.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 111 125899999999999999999999999999876
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=116.41 Aligned_cols=99 Identities=15% Similarity=0.335 Sum_probs=79.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
..|+||...+...+..++.|.-.|+.|+|||||++|+++|.|.+ +.+|......... .. +..-.- +.
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~e---------~~--fa~~k~-Ht 618 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKDE---------FR--FACLKA-HT 618 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccchh---------hh--hccccc-cc
Confidence 47899999998888899999999999999999999999999976 8999876541100 00 111111 11
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-.|++++|+||+.+|||+|.|.+|+||.+...
T Consensus 619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23999999999999999999999999999765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-08 Score=98.26 Aligned_cols=92 Identities=15% Similarity=0.355 Sum_probs=71.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+..|.|||++ .+.+.+|. ..+++.|+|||+|++||+|+.+ |. +.+||+... ..+.+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~--------------~~i~~ 140 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK--------------KKIST 140 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC--------------EEeec
Confidence 3455689999997 56666764 5688999999999999999754 44 899999864 44444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~ 357 (779)
... ..+.+++|||||++|++++. |..++||++.
T Consensus 141 ~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 432 23789999999999999985 7889999984
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=111.47 Aligned_cols=253 Identities=18% Similarity=0.172 Sum_probs=139.5
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++||||-+.||.||+++.|.+.|.+|+|+ .-+|||+.++.+.|-+..-+..+..-.+.......|- ---
T Consensus 421 DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~------~~~ 494 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPN------ESE 494 (733)
T ss_pred CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCC------ccC
Confidence 378999999999999999999999999996 3478898888888888776633222111100000000 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccc--cCCCcceeeeecccc-cchhceeeecCCcccccccccccc
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF--ASNGSRVAHYAKESS-KHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~--~s~g~~va~~A~~~s-K~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
|.+--..|+--+...+-. | + +-.+..-...... -..|.+++.++.+.+ |.+. .+.|++....
T Consensus 495 p~~~~~~W~~~~~~e~~~---~-v-~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl----------iHQLSK~~sQ 559 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEK---G-V-CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL----------IHQLSKRKSQ 559 (733)
T ss_pred Ccccceeechhhhhhhcc---c-e-EEEEecCCccceeeeecCCceEEEeccCCCcceEE----------EEeccccccc
Confidence 111000232221110000 0 0 0000000000000 135566655554332 2111 0111111111
Q ss_pred cc-CCCcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 216 FL-PDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 216 l~-p~~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.. ....+.+..+ +-.. ....|+ .....|+|||+....+++.+..-...|+.|+.+|.|.-|+.++.|++ +
T Consensus 560 ~PF~kskG~vq~v~FHPs-----~p~lfV--aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~ 631 (733)
T KOG0650|consen 560 SPFRKSKGLVQRVKFHPS-----KPYLFV--ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-M 631 (733)
T ss_pred CchhhcCCceeEEEecCC-----CceEEE--EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-e
Confidence 00 0011111111 0000 001122 23457999999998888888877788999999999999999999987 7
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||+.-. ..-|+.-|-+. ..|.+++|.+-=..||+|+.||+++||--.-|
T Consensus 632 ~WfDldls--------------skPyk~lr~H~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 632 CWFDLDLS--------------SKPYKTLRLHE-KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred EEEEcccC--------------cchhHHhhhhh-hhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 89998753 11122223332 34899999999999999999999999854433
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-07 Score=103.57 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=54.1
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeE
Q 004015 272 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 351 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTV 351 (779)
.+++|+|||++|+.++.++ +.+||+.++ .... +..+. ...+++|||||++|+.++.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g------------~~~~---lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLTSG------------STEV---LSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECCCC------------CeEE---ecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 4578999999999888764 566898765 1111 11111 23568899999999999999999
Q ss_pred EEEecCC--CCCceeeccCC
Q 004015 352 HLFAINP--LGGSVNFQPTD 369 (779)
Q Consensus 352 hIwdl~~--~gg~~~~~~H~ 369 (779)
.+|.+.. ++....+.+|.
T Consensus 396 ~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 396 KVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred eEEEEEECCCCceEEccCCC
Confidence 9998753 33344455553
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-06 Score=91.92 Aligned_cols=115 Identities=8% Similarity=0.128 Sum_probs=74.6
Q ss_pred ccCCCCeEEEEECCCCcEEE-------EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 243 DADNVGMVIVRDIVSKNVIA-------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~-------~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
....++.|.|||+.+...+. .+... .....++|+|||++|++++.....|.+|++... . +..
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~---------~~~ 211 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-H---------GEI 211 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------CCE
Confidence 34567899999998743221 12222 235679999999999888874456999999742 0 012
Q ss_pred eEEEEeec---CC-CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCceeeccC
Q 004015 316 VHLYRLQR---GL-TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 316 ~~l~~l~r---G~-t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~~~~~H 368 (779)
..+.++.. .. .......|+|+||+++|+++.. +++|.||++...++...+..|
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 22333321 00 0111346999999999999854 789999999877665555444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=107.37 Aligned_cols=111 Identities=16% Similarity=0.330 Sum_probs=88.7
Q ss_pred cccccCCCCeEEEEECCC-----------------C-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVS-----------------K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-----------------~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
.+++++.|-.|+|.|+.. . -++++|-.|..+|++|.|.|-.++|+++|.|++ |++||+...
T Consensus 126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t-vKlFDfsK~ 204 (430)
T KOG0640|consen 126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT-VKLFDFSKT 204 (430)
T ss_pred EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe-EEEEecccH
Confidence 356778889999999861 1 367899999999999999999999999999987 899998653
Q ss_pred CCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 302 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 302 ~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+++.-++... ....|.+|+|.|.|.||++|+...++|+||++++.+-+.-
T Consensus 205 ------------saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 205 ------------SAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ------------HHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 1222111111 1234999999999999999999999999999999776554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=99.66 Aligned_cols=227 Identities=18% Similarity=0.219 Sum_probs=137.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|-|||+.|...-++|.. --+|.+|+++ +| +|..+.|..|..||+..+.+++.+.-.. |
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s-----p----------- 108 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS-----P----------- 108 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccC-----c-----------
Confidence 6699999999887677754 5689999997 44 5556889999999999999998886421 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ++..|.---.++.+.+.. +-+|.- ..+++-. ..+ +|.
T Consensus 109 v-~~~q~hp~k~n~~va~~~-~~sp~v--------------------------------i~~s~~~----h~~----Lp~ 146 (405)
T KOG1273|consen 109 V-WGAQWHPRKRNKCVATIM-EESPVV--------------------------------IDFSDPK----HSV----LPK 146 (405)
T ss_pred c-ceeeeccccCCeEEEEEe-cCCcEE--------------------------------EEecCCc----eee----ccC
Confidence 0 011111111111110000 000110 0111100 000 010
Q ss_pred -CcCccc-ccc--CCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 -SQNSLQ-SAI--PGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 -~~~si~-sa~--~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.++... ++. ...+. ...++.+...|.+.|||..+.++++.|+--+ ..|-.|-|+..|+.|++-+.|. .||
T Consensus 147 d~d~dln~sas~~~fdr~----g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR 221 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRR----GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIR 221 (405)
T ss_pred CCccccccccccccccCC----CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEE
Confidence 001000 000 00000 1245677888999999999999999999666 8899999999999999999995 599
Q ss_pred EEeCCCCC-CCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCC
Q 004015 295 IFKIIPGI-LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~-~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~ 359 (779)
+|++..-. .|. .+.....++++--.......++|||-||.|+..+|.+ ..++||.-..+
T Consensus 222 ~ye~~di~~~~r------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 222 TYEISDIDDEGR------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEehhhhcccCc------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 99987420 111 1122323343322223335689999999999888765 46999998764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-07 Score=105.70 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=141.7
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc---Cc---EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~r---lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..+.|+||++.||++++.|.+ ..++..+.+. .. +++.++++.|.+||-...+.+.++...--
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~----------- 103 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP----------- 103 (792)
T ss_pred eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-----------
Confidence 357899999999999999987 5778888884 21 33558999999999999999999976421
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
+.++. +-+|.+..+....... + +-..+...-.+..++........-.. ....+..
T Consensus 104 ----v~~~~-~~~~~a~~s~~~~~s~----~-------------~~~~~~~~s~~~~~q~~~~~~~t~~~---~~~d~~~ 158 (792)
T KOG1963|consen 104 ----VHALV-YKPAQADISANVYVSV----E-------------DYSILTTFSKKLSKQSSRFVLATFDS---AKGDFLK 158 (792)
T ss_pred ----eeEEE-echhHhCccceeEeec----c-------------cceeeeecccccccceeeeEeeeccc---cchhhhh
Confidence 11110 0012221111000000 0 00000000011112111111000000 0000000
Q ss_pred cc-cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe------ccCCCCeEEEEEcCCCCEEEEEe
Q 004015 215 EF-LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF------RAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 215 ~l-~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f------~aHt~~IsaLaFSPdG~lLATaS 287 (779)
.. .|. .+... . .+.+.....+-.+.+|+..++. .++ .-|+-.++|.+|||.++++|+|.
T Consensus 159 ~~~~~~---~I~~~-~--------~ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d 224 (792)
T KOG1963|consen 159 EHQEPK---SIVDN-N--------SGEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGD 224 (792)
T ss_pred hhcCCc---cEEEc-C--------CceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEec
Confidence 00 000 00000 0 0112222234467788887754 221 25777899999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.||+ |.||.-... +- .+.. -..+++.+ +.|.+++||+||.+|.+|+..|..-+|.+.+.+.. |
T Consensus 225 ~dGr-I~vw~d~~~----~~-----~~~t-~t~lHWH~--~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--f-- 287 (792)
T KOG1963|consen 225 SDGR-ILVWRDFGS----SD-----DSET-CTLLHWHH--DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--F-- 287 (792)
T ss_pred cCCc-EEEEecccc----cc-----cccc-ceEEEecc--cccceeEEecCCceEeecccceEEEEEeecCCCcc--c--
Confidence 9999 899964321 00 0111 12344432 46999999999999999999999999999987532 2
Q ss_pred CCCCCCccCCCcCCcceecCCCC
Q 004015 368 TDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 368 H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
-++.|.++.+++-. +.+
T Consensus 288 -----LPRLgs~I~~i~vS-~ds 304 (792)
T KOG1963|consen 288 -----LPRLGSPILHIVVS-PDS 304 (792)
T ss_pred -----ccccCCeeEEEEEc-CCC
Confidence 23346666666433 444
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=103.64 Aligned_cols=130 Identities=23% Similarity=0.275 Sum_probs=97.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC-------CC-CCCCc------
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG-------IL-GTSSA------ 308 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~-------~~-g~~s~------ 308 (779)
+++.|.+.+||.+.+++|+.++.+|++.|++|+|+++|.+++|||.|++ -+||..... ++ +-+++
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t-aHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET-AHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-hHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 4566789999999999999999999999999999999999999999998 799973211 00 10111
Q ss_pred ------------cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCcc
Q 004015 309 ------------CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTK 375 (779)
Q Consensus 309 ------------~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~ 375 (779)
.+.-.--..+..| .| +.+.|.+..|=..|+.++++|-|.|..+||++++.-.-.+.+|...+...
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~l-tg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRL-TG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccCCceeeeeeeee-ec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 0000001123333 23 23568889999999999999999999999999876666778898776654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=118.66 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=81.7
Q ss_pred CCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.-.|.+||++. ..+++.+++|...|.+|.|.+.+ ++|+|+..|++ |.+|+..++ +.++.+.++
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tg--------------Evl~~~p~~ 295 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTG--------------EVLGELPAQ 295 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCc--------------eEeeecCCC
Confidence 35799999985 46888999999999999999976 89999999998 899998875 567777553
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~g 360 (779)
...+.++.|+|-.- .||+++-||+|-||.+....
T Consensus 296 --~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 --GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 23589999999655 89999999999999997653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.9e-07 Score=95.72 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=130.8
Q ss_pred CEEEEEECCCCcEEEEEeCC----CCEEEEEEc--CcEEEE---EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR----SPIYSVRCS--SRVVAI---CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~----s~V~sV~~s--~rlLaV---s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..|.|||+++-+.+|+|.-. ..+.++.+| +.+||. ...+.|++||+.+++...++..|..
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----------- 174 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----------- 174 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC-----------
Confidence 34999999999999999752 346666666 347876 3467999999999999999987742
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
++| .||+.. +|.++|
T Consensus 175 ----~lA----alafs~---------------------------~G~llA------------------------------ 189 (391)
T KOG2110|consen 175 ----PLA----ALAFSP---------------------------DGTLLA------------------------------ 189 (391)
T ss_pred ----cee----EEEECC---------------------------CCCEEE------------------------------
Confidence 233 244431 333332
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCC-eEEEEECCCCcEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCC
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG-MVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG-~V~VwDl~s~~~v~~f~aHt--~~IsaLaFSPdG~lLATaS~DGt 291 (779)
+++..| .|||+++.+++.+..|+.=+ ..|..|+|+||+++|+..|..++
T Consensus 190 ----------------------------TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 190 ----------------------------TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred ----------------------------EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 122233 57999999999999998554 35889999999999999999888
Q ss_pred EEEEEeCCCCCC-CCC--Cc-cCCC------------CceeEEEEeecCCCcccE------EEEEEc--CCCCEEEEEeC
Q 004015 292 NINIFKIIPGIL-GTS--SA-CDAG------------TSYVHLYRLQRGLTNAVI------QDISFS--DDSNWIMISSS 347 (779)
Q Consensus 292 ~I~Vwdi~~~~~-g~~--s~-~~~~------------~s~~~l~~l~rG~t~a~I------~sIaFS--pDg~~LAtgS~ 347 (779)
|+||.+..... ... .. .++. ..+...+...|.+..++| ..++|+ +...++.+++.
T Consensus 242 -VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 242 -VHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred -EEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence 99998865421 000 00 0000 001111122222211111 235566 47889999999
Q ss_pred CCeEEEEecCCC-CCce-eeccC
Q 004015 348 RGTSHLFAINPL-GGSV-NFQPT 368 (779)
Q Consensus 348 DGTVhIwdl~~~-gg~~-~~~~H 368 (779)
||....|.+... ||.. .++.|
T Consensus 321 dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 321 DGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred CCeEEEEEcCCCCCceeEEEEee
Confidence 999999999884 4443 33555
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=95.22 Aligned_cols=104 Identities=10% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCeEEEEECCC--C--cEEEEeccC------CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 247 VGMVIVRDIVS--K--NVIAQFRAH------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 247 dG~V~VwDl~s--~--~~v~~f~aH------t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.|.+||+.. + +.+..+..+ ......+.|+|||++|.++......|.+|++... + ....
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~--~--------~~~~ 265 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED--G--------SVLS 265 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC--C--------CeEE
Confidence 57888888863 2 233443322 1123469999999999998765556999998653 0 0111
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCce
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV 363 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~ 363 (779)
.+.....|. ....++|+|||++|++++. +++|.||++....+..
T Consensus 266 ~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 266 FEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 222222221 2457899999999998886 8999999997654443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=119.12 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=79.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEEcCCCC-EEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCcee
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSGI-LLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~--~IsaLaFSPdG~-lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
+++...|.+.|||++.++++-.|.-|.. .++.|+|+||+. .|++|+.|.+ +|.+||++.. + .
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---s----------s 244 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---S----------S 244 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---C----------C
Confidence 4456678999999999999988887765 578899999854 6777777654 6999998853 1 1
Q ss_pred EEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+..+ +++.. -|.+++|++.+ ++|++++.|+.|.+|+.++..-
T Consensus 245 P~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 245 PLKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred chhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 11222 33322 28899999955 9999999999999999998543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=103.84 Aligned_cols=113 Identities=12% Similarity=0.223 Sum_probs=91.9
Q ss_pred ccccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 241 FPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-------~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
+++++.|-+|.||++-.+ +++..+.+|...|.-++|.|.. ..|+||+.|-+ |.||++.++
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~-v~iWnv~tg----------- 164 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT-VSIWNVGTG----------- 164 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce-EEEEeccCC-----------
Confidence 467788999999998753 5788999999999999999975 48899998865 999999886
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..++++. ++..|++++|+.||.+|++++.|..|+|||.....-...-.+|...
T Consensus 165 ---eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 165 ---EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ---ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 4455554 3456999999999999999999999999999875433333467654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=108.43 Aligned_cols=103 Identities=16% Similarity=0.313 Sum_probs=86.1
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.+++++.|.+..||++... +...++.+|..+|..|.||||.++|++++.+.- +.+||+.++ ...
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~-~~lwDv~tg------------d~~ 304 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV-LSLWDVDTG------------DLR 304 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh-eeeccCCcc------------hhh
Confidence 5678888999999987654 457889999999999999999999999999865 899999987 345
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
++|. .| +.-.+++++|.|||..+++|+.|+++..||+.-
T Consensus 305 ~~y~--~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 305 HLYP--SG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred hhcc--cC-cCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 5554 23 223489999999999999999999999999953
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=102.12 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=82.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++..|.+|.||++.+++.+.++. |..-|.+++|+.||.+|+|++.|.. |+|||.+.+ .+.. ..
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~------------~~v~--e~ 211 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRG------------TVVS--EG 211 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCC------------cEee--ec
Confidence 345677899999999999999988 9999999999999999999999976 999999876 2222 22
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeC---CCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~---DGTVhIwdl~~~gg~~~~ 365 (779)
.++..++-+.+-|=.+|.++.||-+ ++.+-|||-.....+..+
T Consensus 212 -~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 212 -VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred -ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence 3444455667889899997767655 456888987665555444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-07 Score=99.61 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=82.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++...|.|+|||++.+.+.+.++.|++.|++|.++-...+||+++..|. |.|..+.+... .-.
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd-iiih~~~t~~~--------------tt~ 158 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD-IIIHGTKTKQK--------------TTT 158 (673)
T ss_pred eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc-EEEEecccCcc--------------ccc
Confidence 345667899999999998888999999999999999999999999999887 78888877511 112
Q ss_pred eecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCCce
Q 004015 321 LQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg~~ 363 (779)
|.-+. ...|.=+.|||..+++ .+++++|+|++||+..-....
T Consensus 159 f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 159 FTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred eecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 21111 1125578899988864 578999999999997654433
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=106.03 Aligned_cols=211 Identities=12% Similarity=0.162 Sum_probs=129.3
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEc--Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s--~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.+|.||||.+-...-..+..+ .+|+++.+ .+ .++.+.|+.|.|||+.+...+.+|.+|+.-.
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa------------ 554 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA------------ 554 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCc------------
Confidence 679999998866443334433 47788887 23 3566889999999999999999999986421
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.+|.++. .--.+|..| -..+|..|.....+++.+. .++..+..|-
T Consensus 555 scIdis~-------dGtklWTGG------------------lDntvRcWDlregrqlqqh----------dF~SQIfSLg 599 (705)
T KOG0639|consen 555 SCIDISK-------DGTKLWTGG------------------LDNTVRCWDLREGRQLQQH----------DFSSQIFSLG 599 (705)
T ss_pred eeEEecC-------CCceeecCC------------------Cccceeehhhhhhhhhhhh----------hhhhhheecc
Confidence 2233321 111222211 1123333333333333210 0000000000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.....+| ++.+...+.|.|-.... .....+.-|.+-|.+|+|.+-|+++++.+.|. .++.|+
T Consensus 600 -------~cP~~dW---------lavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDn-lLnawr 661 (705)
T KOG0639|consen 600 -------YCPTGDW---------LAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWR 661 (705)
T ss_pred -------cCCCccc---------eeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchh-hhhhcc
Confidence 0001111 23344556666655443 33455667889999999999999999999995 589999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..-+ ..++.... ...|.++..|-|.+||+|||.|....||.+
T Consensus 662 tPyG--------------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 662 TPYG--------------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred Cccc--------------cceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8765 22343322 245999999999999999999999999876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-08 Score=112.49 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=82.5
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 242 PDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~-------~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
+.+..+|.|+||.+..+ .+-..+.+|...|+.|.|.|= ..+||+++.|-+ |+|||+...
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~------------ 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANA------------ 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhh------------
Confidence 45678999999999754 466778899999999999994 668999999987 999999875
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
....+| -|++ ..|.++||||||+.+|+.+.||+++||.-...
T Consensus 711 --~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 711 --KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred --hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 111233 4554 35999999999999999999999999986553
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=105.12 Aligned_cols=93 Identities=13% Similarity=0.236 Sum_probs=70.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+.+|-+|+|||+++.+.-..|.+|++.|..++|||||+++||.+.||+ |+||+-+... ..+|.-
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e-------------~pv~Eg 759 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE-------------QPVYEG 759 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC-------------CccccC
Confidence 44567889999999999999999999999999999999999999999998 8999866531 122221
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.|-...+--.|.|.-||++|++.+.|.
T Consensus 760 -~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 760 -KGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred -CCCccCcceeEEEEecCcEEEEecccc
Confidence 111111123567888999998887664
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-07 Score=102.23 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=94.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
-+++++.|.+|++||+.++++..++..|.+.|.+|+|.|. .++|++||.||+ ++++|.+.. ..+ ...
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~--~~s---------~~~ 325 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDP--SNS---------GKE 325 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCc--ccc---------Cce
Confidence 4578888999999999999999999999999999999995 889999999998 899999842 111 223
Q ss_pred EEeecCCCcccEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCCCc-eeeccCCCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGS-VNFQPTDANFT 373 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~gg~-~~~~~H~~~~~ 373 (779)
+++ .+.|-.++|.|-+.. +.+++.||+++=||+...+.+ .+++.|.+.+.
T Consensus 326 wk~-----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 326 WKF-----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEe-----ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 444 245889999887654 667789999999999887544 36689977665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-06 Score=95.00 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=61.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.++.. ..+..+...+.+.+|+|||++|+.++.++ ..|.+||+..+ ... .+....
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g------------~~~---~Lt~~~- 374 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------GVQ---VLTDTF- 374 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC------------CeE---EeCCCC-
Confidence 344556666543 23333444566789999999998876543 23677887654 112 222221
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCe---EEEEecCCCCCceeeccCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGT---SHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGT---VhIwdl~~~gg~~~~~~H~ 369 (779)
...+.+|||||++|+.++.++. +.++++ +++....+.+|.
T Consensus 375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence 2346889999999999998875 455555 233344555553
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=107.50 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=88.4
Q ss_pred CcccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 239 GHFPDADNVGMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 239 g~~~s~~~dG~V~VwDl~s--------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
..++.++.+|++++|.+.. .+++.+|++|.+||-|++..+.|..+.||+.||+ |+.|.+.+.. +
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~-------d 378 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQ-------D 378 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCC-------C
Confidence 3567889999999999932 3589999999999999999999999999999998 9999887431 0
Q ss_pred CCCce--eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSY--VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~--~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..++ ..+....-|++.+ |+.+++|+....|+++|.|||+++|.....
T Consensus 379 p~ds~dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred cccccCcchhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCc
Confidence 11111 1112223576654 899999999999999999999999998654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-07 Score=93.98 Aligned_cols=90 Identities=19% Similarity=0.341 Sum_probs=66.2
Q ss_pred CCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.|.|++.. .+++.+++|.+.|+.|+|.| +...|+||++|-. +.|||+..-...+. . +--..|+.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~--~----dPilay~a--- 334 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG--E----DPILAYTA--- 334 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC--C----Cchhhhhc---
Confidence 357889999864 68899999999999999999 5679999999854 89999986421010 0 01122331
Q ss_pred CCcccEEEEEEcC-CCCEEEEEeCC
Q 004015 325 LTNAVIQDISFSD-DSNWIMISSSR 348 (779)
Q Consensus 325 ~t~a~I~sIaFSp-Dg~~LAtgS~D 348 (779)
.+.|..|.|++ ...|||++...
T Consensus 335 --~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 335 --GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred --cceeeeeeecccCCCEEEEEecC
Confidence 24699999984 78899998764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=105.98 Aligned_cols=180 Identities=18% Similarity=0.276 Sum_probs=127.9
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
..|.|+.|..+....-|+ -++.|..+.|. .-.+.|+....|+|||+...+.+.++.+. |
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg-----~------------- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG-----S------------- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC-----C-------------
Confidence 678899997776544342 26889999995 66788888999999999988777777552 1
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
+||..-+ ++| .|.
T Consensus 608 ----kwiS~ms----------ihp--------------~GD--------------------------------------- 620 (733)
T KOG0650|consen 608 ----KWISSMS----------IHP--------------NGD--------------------------------------- 620 (733)
T ss_pred ----eeeeeee----------ecC--------------CCC---------------------------------------
Confidence 2332210 000 111
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++-++.++.+..||+.- .++.++++-|...|++++|.+.=-|+|+||.||+ +.||.-+
T Consensus 621 -------------------nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~ 680 (733)
T KOG0650|consen 621 -------------------NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGM 680 (733)
T ss_pred -------------------eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeee
Confidence 123346788898999874 4688899999999999999999999999999998 7888644
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcc---cEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNA---VIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a---~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
-. ..- -.+.....+.+| ||+... -|.+++|.|.--||.+++.||||++|
T Consensus 681 VY-~Dl----~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VY-NDL----LQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ee-hhh----hcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 32 000 001123455555 454322 28899999999999999999999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.6e-07 Score=94.63 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 260 VIAQFRAHKSPISALCF--DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaF--SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
.+.+|.-....|.-|.| +|-+++||.+...|. +.+||+....+.. .-.++ .-.+ .+.|+..+||.
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~--------~ttl~-~s~~---~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPPK--------CTTLT-HSKS---GSTVRQTSFSR 363 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCcc--------CceEE-eccc---cceeeeeeecc
Confidence 34555555567777665 556999999999997 8999998752111 00111 1112 34599999999
Q ss_pred CCCEEEEEeCCCeEEEEec
Q 004015 338 DSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl 356 (779)
||.+|+...+|+||--||.
T Consensus 364 dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 364 DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCcEEEEEeCCCcEEEEEe
Confidence 9999999999999998885
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=101.40 Aligned_cols=99 Identities=9% Similarity=0.238 Sum_probs=80.0
Q ss_pred CCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..|.+|+||.-. ...++..+..+...|++++|||. -..+|+++.||+ |.|||+.....++ +.+..
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~P------------v~s~~ 483 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEP------------VLSQK 483 (555)
T ss_pred eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCC------------ccccc
Confidence 448999999998 77889999999999999999996 568999999998 8999998652222 12222
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.+ ......+.|+++|+.||+|...|++|+|++..
T Consensus 484 ~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 22 23367888999999999999999999999964
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=101.29 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=92.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC--C--C--------
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT--S--S-------- 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~--~--s-------- 307 (779)
.++.+..||++|||+..+...+..+.+|...|.+|.|||||++||+-+.| . .+||++.++.... + +
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~t~~~k~~~~~~c 235 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARKTPFSKDEMFSSC 235 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhcCCcccchhhhhc
Confidence 46777899999999999998899999999999999999999999999999 3 7999999873211 1 0
Q ss_pred ccCCCC--ceeEEE--------------EeecC---------CC-cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 308 ACDAGT--SYVHLY--------------RLQRG---------LT-NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 308 ~~~~~~--s~~~l~--------------~l~rG---------~t-~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.++... ....+. .+..+ .. ...|.+++-|+||+++|.|+.||.|-|++...-..
T Consensus 236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 000000 000111 01111 00 11388999999999999999999999999987654
Q ss_pred ceee-ccCC
Q 004015 362 SVNF-QPTD 369 (779)
Q Consensus 362 ~~~~-~~H~ 369 (779)
..-+ +.|.
T Consensus 316 ~~~vk~aH~ 324 (398)
T KOG0771|consen 316 LQYVKEAHL 324 (398)
T ss_pred eEeehhhhe
Confidence 4433 4563
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=98.58 Aligned_cols=94 Identities=10% Similarity=0.138 Sum_probs=59.8
Q ss_pred eccCCCCeEE---EEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 264 FRAHKSPISA---LCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 264 f~aHt~~Isa---LaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
-++|...|.. +-|.-|..+||||+. |+. |+|||++........ ++.......+.-. ....+.+++....|
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~-iKVWDLRk~~~~~r~--ep~~~~~~~t~sk---rs~G~~nL~lDssG 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADST-IKVWDLRKNYTAYRQ--EPRGSDKYPTHSK---RSVGQVNLILDSSG 283 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcc-eEEEeeccccccccc--CCCcccCccCccc---ceeeeEEEEecCCC
Confidence 3466666666 677788889999999 887 999999875210000 0000000001100 01126677777778
Q ss_pred CEEEEEeCCCeEEEEecCCCCCce
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
.+|.+...|++|+.|++...+.-+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCc
Confidence 999999999999999998765443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=106.34 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 338 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD 338 (779)
.++..+.--.++|...+|||||++||+.|.||. +||||..+. +|.-+-+.. -+-..|+|||||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~---------------eLlg~mkSY-FGGLLCvcWSPD 343 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQ---------------ELLGVMKSY-FGGLLCVCWSPD 343 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHH---------------HHHHHHHhh-ccceEEEEEcCC
Confidence 455544444568999999999999999999997 899998753 111111111 122789999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 339 SNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 339 g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|+||++|+.|--|.||.+....-...-++|
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEecccc
Confidence 999999999999999999765322222455
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-06 Score=95.32 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=60.0
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
|.+||+.++. +..+..|...+...+|+|||+.|+.++ .+|. .+||++... +. . ..+ + +.. .
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~--~~--------~-~~~--l--~~~-~ 335 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSAS--GG--------G-ASL--V--GGR-G 335 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECC--CC--------C-eEE--e--cCC-C
Confidence 5556776665 355666777888999999999877665 4566 799987542 00 1 111 1 111 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..++|||||++|+.++.++. .+||+...
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g 363 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNV-VKQDLTSG 363 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCE-EEEECCCC
Confidence 35789999999999888764 45898664
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=92.15 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=88.2
Q ss_pred cccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.|++...-+.|++||.+.+ ++++.|.--..+|+++...|+|+++.+|...|. +..||++.+ .++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~--------------kl~ 282 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGG--------------KLL 282 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCc--------------eee
Confidence 3455556689999999865 689999888899999999999999999999997 899999875 333
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
-....|.+ ..|.+|...|..++||+++.|+-++|||+.+.+-.
T Consensus 283 g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 GCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 33334554 34999999999999999999999999999885443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-06 Score=85.84 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=41.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEeCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-----GHNINIFKII 299 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-----Gt~I~Vwdi~ 299 (779)
.|.|.+||+.+.+.+.+++.. .++.++|||||++|+|+... .+.++||+..
T Consensus 124 ~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 124 NGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 478999999999988887543 47899999999999999763 2348899864
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-06 Score=98.52 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=79.8
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEEcCCCCE-EEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 241 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSP--ISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~--IsaLaFSPdG~l-LATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.+-.||.|++||.+.. ..+...+.|... |..+.|.+.|-- |++||.+|. |.+||++.....+ -
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~--------~ 1294 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET--------F 1294 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc--------c
Confidence 456678999999998853 467888999987 999999998875 999999997 9999998631000 1
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
....+....|. .++++...++...+|+|+. +.|+||++.
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 11122222242 2678999999999999999 999999995
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=96.11 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...|++|+.|+||+++|-|+.||. |-|++...- +.++-.++.| ...|+++.|+||.+++++.|.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l--------------q~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL--------------QRLQYVKEAH-LGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCc-EEEEEecee--------------eeeEeehhhh-eeeeeeEEEcCCcCccccccc
Confidence 358999999999999999999997 899998753 4445444443 235999999999999999999
Q ss_pred CCeEEEEecCC
Q 004015 348 RGTSHLFAINP 358 (779)
Q Consensus 348 DGTVhIwdl~~ 358 (779)
|.+++|..|.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 99999999854
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=94.42 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred cccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 240 HFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.+++++.|++++|||++.-. ++-..-.|+.+|.+..|||+|-.|+|.+.|.+ |+|||..- .+. -..+....
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~--~sa--~~~p~~~I 411 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSC--ISA--KDEPLGTI 411 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeeccc--ccc--cCCcccee
Confidence 46778899999999998632 34455689999999999998777999999976 99999741 000 00001111
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.|-...-|-. .....+|.||..+|++|-.-..|-||+-+
T Consensus 412 ~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 412 PHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eccCcccccc---cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 2211111111 14578999999999999999999998865
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=98.74 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=55.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
+++.-+.||.++|||+.+.+++..++..-+...|++|||||+|+|||++|. .|.||.+...
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er 364 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER 364 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence 566778999999999999999999998889999999999999999999995 6999998753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-05 Score=88.65 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=61.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++. +|. ..|| ++..+ ....+ .+. +
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~-~~iy~~dl~~g------------~~~~l-t~~-g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR-PQIYRVAASGG------------SAERL-TFQ-G 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECCCC------------CeEEe-ecC-C
Confidence 4689999988764 456666666678999999999887775 343 4455 44332 12222 221 2
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
.....++|||||++|+..+.++ .|.+|++...
T Consensus 336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 1234689999999999876543 5888888543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=100.87 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=66.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..|++|.||...+..++.+|++|.+.|.||....+++ |+|+|.|.| ++||.+.. ..+.+ .
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T-akvW~~~~----------------l~~~l-~ 137 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST-AKVWRIGE----------------LVYSL-Q 137 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc-eEEecchh----------------hhccc-C
Confidence 34566777777777777777777777777777777777 777777766 67776543 12333 3
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|++ +.||.+++=|+. .+.+||.|.+|++|.= .....+|.+|++-
T Consensus 138 gH~-asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~ 181 (745)
T KOG0301|consen 138 GHT-ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDC 181 (745)
T ss_pred Ccc-hheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhh
Confidence 433 446777766666 4457777777777765 2334456666543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-05 Score=86.42 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=54.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.+++.. .+.-+......++|||||++|+..+.++ ..|.+||+.++ ... .+..+.
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g------------~~~---~Lt~~~- 379 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG------------SVR---TLTPGS- 379 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC------------CeE---ECCCCC-
Confidence 3556666665432 2222223445689999999998766543 24788998654 111 222221
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-Ce--EEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSR-GT--SHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D-GT--VhIwdl 356 (779)
.....+|||||++|+..+.+ +. +.++++
T Consensus 380 --~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 380 --LDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 23467999999998887764 33 555555
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-05 Score=83.73 Aligned_cols=112 Identities=13% Similarity=0.254 Sum_probs=75.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF-DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaF-SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+..|+.+.-||+.+++...+|++|++.|-++.- +.+|+ ++||++||+ +||||.+++..-.. -+ .+.+ ..+
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~k~v~~--ie---~yk~-~~~ 202 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQKHVSM--IE---PYKN-PNL 202 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEeccccceeEE--ec---cccC-hhh
Confidence 3457899999999999999999999999999998 56665 679999998 89999998610000 00 0000 011
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.|-+....|-++ .-+..|++.|.. ....+|.+........|
T Consensus 203 lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 203 LRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcccCceeEEE--eccCceEEecCC-CceeEEeccCCCceEEE
Confidence 232222235444 445669887764 45788999776554443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-07 Score=66.28 Aligned_cols=38 Identities=29% Similarity=0.680 Sum_probs=36.1
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
+++.+|++|.++|.+|+|+|++.+|||++.|++ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578999999999999999999999999999987 99997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-06 Score=87.82 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=75.3
Q ss_pred cccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCC-------CCccCCC
Q 004015 242 PDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGT-------SSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~-------~s~~~~~ 312 (779)
++...||.|+|||.+. ..++..+.+|+.-|.++.|+|. .++|+|++.|.. |.+|-...-.... .+.....
T Consensus 231 vt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~~ 309 (370)
T KOG1007|consen 231 VTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESEDE 309 (370)
T ss_pred EEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcch
Confidence 4456789999999985 5689999999999999999996 678899999976 7888643321000 0000000
Q ss_pred CceeEEEEeecC----CC--cccEEEEEEcCCCCE-EEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQRG----LT--NAVIQDISFSDDSNW-IMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~rG----~t--~a~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~ 358 (779)
.+.....-|.-| .. .-.|++++||.-.-| ||+-|.||.+.|=.+.+
T Consensus 310 dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 DSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 011110111111 11 123999999876666 56668899999876654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.6e-05 Score=87.52 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.++.. ..+..+...+....|||||++||..+.++ ..|.+||+..+ . .. .+..+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~------------~-~~--~lt~~-- 376 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS------------G-ER--ILTSG-- 376 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC------------c-eE--eccCC--
Confidence 577788776654 33333455677789999999998876543 24666776432 1 11 12122
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+.+|||||++|+..+.+
T Consensus 377 -~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 -FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred -CCCCCCeECCCCCEEEEEEcc
Confidence 136789999999999887664
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-05 Score=85.28 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+..|+|||..++..+....---+.++-|+|||||.+|..|..|+. ++||+.... +. ...+.+-
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--wt----------~erw~lg--- 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--WT----------KERWILG--- 279 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--ce----------ecceecc---
Confidence 3467999999998766555444578999999999999999999986 999965432 11 1122332
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
...|+..+|||+|++|..+.. |.-+||.+.-.+....+
T Consensus 280 -sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 236999999999999987765 45567888665554444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.5e-05 Score=85.55 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=61.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... . +....+ ... + .
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~---------g~~~~l-t~~-~---~ 331 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-G---------GAPQRI-TWE-G---S 331 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-C---------CCeEEe-ecC-C---C
Confidence 5888999887654 444445577889999999998877765433567754321 0 012222 111 1 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
...+.+|||||++|+..+.++ .+.+||+...
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 256789999999998876543 4677777553
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.2e-05 Score=86.19 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=60.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|.++|+.++. +..+..|...+....|+|||+.|+..+..+....||.+... + +....+ .+. +.
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~--~--------g~~~~l-t~~-g~--- 328 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS--G--------GAAQRV-TFT-GS--- 328 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC--C--------CceEEE-ecC-CC---
Confidence 35555665554 45555566566778999999998877764323678876432 0 012222 222 21
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---eEEEEecCCC
Q 004015 329 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL 359 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~ 359 (779)
.....+|||||++||..+.++ .|.+|++...
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 134678999999999887765 5899998664
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=83.43 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=60.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++.. |. .|.+||+..+ ..+.+. .+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------------~~~~lt---~~- 332 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------------NPRRIS---FG- 332 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------------CeEEee---cC-
Confidence 3577889887765 4566666667789999999999887753 32 3566675543 122222 11
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---eEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~ 357 (779)
...+...+|||||++|+..+.++ .+.+|++.
T Consensus 333 -~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 -GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred -CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 12255788999999999887643 46666653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-06 Score=89.51 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=77.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEe--ccCC-CCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQF--RAHK-SPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f--~aHt-~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++..||.|++||+++...++.+ .+|. .+-.|++.+-.+.+++++...- -.+.+||++... +
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------q 155 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------Q 155 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-------------c
Confidence 4567899999999987655544 4676 5778888888899999986632 248899998740 1
Q ss_pred EEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 317 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+..+... +.-.|++++|.| |-..|++||.||-|-|||++.....
T Consensus 156 ~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 156 LLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred hhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 12222222 223599999999 6789999999999999999875443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-06 Score=87.58 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred cccccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
++++.+.|++|+|||+.+. .+-...++|.++|..+.|-+- |+.+|++|.|++ +.||.=....... .+.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~~~~~-----~~~ 100 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEKSEEA-----HGR 100 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccccccc-----ccc
Confidence 4566778999999997643 577889999999999999664 999999999998 8999753220000 000
Q ss_pred ceeEEEEeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.-....++. .....|++|+|+| -|-.+|+++.||+++||+.-.......+
T Consensus 101 ~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 101 RWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred eeEEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 111122221 1123499999998 5788999999999999998765544444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00025 Score=79.57 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=113.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE-EEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~-sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.|+|..|.+.+.++.....+. .+.++ ++++.+ +.++.|.++|+.+++.+.++..... |
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------------~ 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------------P 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------------c
Confidence 569999999999999999766554 46665 465544 6789999999999999999965321 1
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+-+|++. +|+++..
T Consensus 81 -----~~i~~s~---------------------------DG~~~~v---------------------------------- 94 (369)
T PF02239_consen 81 -----RGIAVSP---------------------------DGKYVYV---------------------------------- 94 (369)
T ss_dssp -----EEEEE-----------------------------TTTEEEE----------------------------------
T ss_pred -----ceEEEcC---------------------------CCCEEEE----------------------------------
Confidence 1123321 3332210
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEEcCCCCEEEEEeCCCCE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-------KSPISALCFDPSGILLVTASVQGHN 292 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH-------t~~IsaLaFSPdG~lLATaS~DGt~ 292 (779)
....++.|.|+|..+.++++++... ...+.+|..+|....++.+-.|...
T Consensus 95 -----------------------~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 95 -----------------------ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp -----------------------EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred -----------------------EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 0123568999999999999988743 3468899999999988777777543
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCCceee
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg~~~~ 365 (779)
|-+-|.... .......+..+. ...+..|+||++|++++ ..+..+-++|..+......+
T Consensus 152 I~vVdy~d~------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 152 IWVVDYSDP------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEETTTS------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEEEeccc------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 555564432 012222333332 36799999999997664 56779999998875443333
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=98.11 Aligned_cols=145 Identities=14% Similarity=0.256 Sum_probs=107.7
Q ss_pred CEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecCceeEeeCCCceecCCCcc
Q 004015 85 PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRV 162 (779)
Q Consensus 85 ~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrv 162 (779)
.|++|+|. +.-|+++.+.++++||...+..++++++|.... + .+||+-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtV------------y-------cVAys~----------- 63 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTV------------Y-------CVAYAK----------- 63 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceE------------E-------EEEEcc-----------
Confidence 68899994 667888888999999999999999999986421 1 235541
Q ss_pred CCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCccc
Q 004015 163 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 242 (779)
Q Consensus 163 spq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~ 242 (779)
+|. .|+
T Consensus 64 ----------------dGk----------------------------------------------------------rFA 69 (1081)
T KOG1538|consen 64 ----------------DGK----------------------------------------------------------RFA 69 (1081)
T ss_pred ----------------CCc----------------------------------------------------------eec
Confidence 221 234
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
++..|..|.||.-+-...++ -.|+..|.||.|+|=...|||++-.. +-+|....- ++. + +
T Consensus 70 SG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK------------~V~---K-~ 129 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK------------SVS---K-H 129 (1081)
T ss_pred cCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchhh--ccccChhhh------------hHH---h-h
Confidence 45667889999765433322 27999999999999999999999863 788875432 111 1 1
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+ ..++|.+++|..||+|||.|-.+|||.|-+
T Consensus 130 k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 130 K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 1 235688999999999999999999999873
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=96.77 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=76.6
Q ss_pred cccccCCCCeEEEEECCCCc--EEEEeccCC--C-CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSKN--VIAQFRAHK--S-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt--~-~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++++.+|.|++||++... ..-++..|. + ..++|...++..++|+|+. + .|+||++.-...
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~G~~l----------- 1337 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLSGEQL----------- 1337 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecChhhh-----------
Confidence 35567889999999999742 223344555 4 5999999999999999998 4 499999864210
Q ss_pred eeEEEEeecCC---CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 315 YVHLYRLQRGL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 315 ~~~l~~l~rG~---t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
...+...++ ....+.|++|.|---.+|+|+.|.+|-||...+.+
T Consensus 1338 --~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 --NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred --cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 011111111 11236899999999999999999999999987653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=82.25 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 271 ISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
....+|||||++||.++.++. .|.+||+..+ ... .+..+ ....+.+|||||++|+.++.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g------------~~~---~lt~~---~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG------------QVT---ALTDT---TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC------------CeE---EccCC---CCccCceECCCCCEEEEEEec
Confidence 345789999999998776542 4788898764 112 22122 124578999999999988865
Q ss_pred C-eEEEEecCCCC
Q 004015 349 G-TSHLFAINPLG 360 (779)
Q Consensus 349 G-TVhIwdl~~~g 360 (779)
+ .-.+|-+...+
T Consensus 392 ~g~~~l~~~~~~g 404 (427)
T PRK02889 392 GGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEECCC
Confidence 4 33444443333
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00036 Score=77.14 Aligned_cols=85 Identities=18% Similarity=0.380 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec-CCCcccEEEEEEcCCCCEEEEEe-C
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDISFSDDSNWIMISS-S 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r-G~t~a~I~sIaFSpDg~~LAtgS-~ 347 (779)
....|+++|||++|..+......|-+|++... .+.+..+..+.. |. .-..++|+|||+||+++. .
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~----------~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA----------TGTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT----------TTTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC----------CCceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecC
Confidence 57889999999999888877677999999542 112333333333 32 268999999999999987 5
Q ss_pred CCeEEEEecCCCCCceeecc
Q 004015 348 RGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 348 DGTVhIwdl~~~gg~~~~~~ 367 (779)
+++|.+|++....|......
T Consensus 313 s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEec
Confidence 67999999987767665543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.8e-06 Score=85.73 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=53.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++++.-||.||||..++..+++.++-|...|++|+|+||..++|.||.|++ |-+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 466778999999999999999999999999999999999999999999987 899986
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-06 Score=97.89 Aligned_cols=245 Identities=16% Similarity=0.179 Sum_probs=140.2
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcC-c-EEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS-R-VVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~-r-lLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|+||++.++.++.+++. .+.|.+++.+. + ++| .+.|.-|++|-+.++..+..|.+|... +.
T Consensus 211 d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga------------vt 278 (1113)
T KOG0644|consen 211 DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA------------VT 278 (1113)
T ss_pred cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc------------ee
Confidence 57899999999999999986 67899999962 3 333 367788999999999988888777421 12
Q ss_pred ceeecCceeEeeCCC-ceecCCCccCCcccccccccccccCCCcceeeeecccc-cchhceeeecCCccccccccccccc
Q 004015 139 PLAVGPRWLAYSGSP-VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS-KHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 139 piAlgpRwLAyas~~-~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~s-K~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.++++|+- +.++.. +-.| ..|+.|....+.+. ....++++.+--.+.. -..++|.. .++..
T Consensus 279 aiafsP~~-sss~dgt~~~w-d~r~~~~~y~prp~---~~~~~~~~~s~~~~~~~~~f~Tgs~-d~ea~----------- 341 (1113)
T KOG0644|consen 279 AIAFSPRA-SSSDDGTCRIW-DARLEPRIYVPRPL---KFTEKDLVDSILFENNGDRFLTGSR-DGEAR----------- 341 (1113)
T ss_pred eeccCccc-cCCCCCceEec-cccccccccCCCCC---CcccccceeeeeccccccccccccC-Ccccc-----------
Confidence 23334322 111111 1112 11222211111110 0011111111000000 00000000 00000
Q ss_pred cCCCcCccccccCCCCCCCc--------cCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 004015 217 LPDSQNSLQSAIPGGKSNGT--------VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTAS 287 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~--------v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS 287 (779)
........++.+++ .+...+.+-.+-.+.+|++.++..+..+.+|..++..|.|.| +-++..+|+
T Consensus 342 ------n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 342 ------NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred ------cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 00000000011110 011112334556778899999999999999999999999999 555667899
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.||. +.|||+-.+ .-...|. .| ..++.+..||+||+.++..-+.|-+.|+.....
T Consensus 416 ~dgs-t~iwdi~eg------------~pik~y~--~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 416 YDGS-TIIWDIWEG------------IPIKHYF--IG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred CCCc-eEeeecccC------------Ccceeee--cc--cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 9998 789999876 1123343 33 245889999999999999999999999776443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=86.47 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=82.2
Q ss_pred ccccCCCCeEEEEECCC--C--cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 241 FPDADNVGMVIVRDIVS--K--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s--~--~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.+..+|.|.||.--. + .....|.=|..+|++|+|++||.+|.||+..|- +-+|.+.++ ..+
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~------------~kq 286 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETG------------KKQ 286 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeecCC------------Ccc
Confidence 34566789999985332 1 233556678899999999999999999999985 789999875 112
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.|-+| .+.|..+.+|||+.+.+....|..||+-...+-....++.
T Consensus 287 fLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 287 FLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred ccccc-----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 23332 3569999999999999999999999998886654444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-05 Score=78.71 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=84.6
Q ss_pred ccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 243 DADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~---~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.+-|-+..|||+.++. +..++-||..+|..++|...|. ++|+.+.||. +|+||++.- ..+ ..+
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~l-eHS----------TII 235 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRSL-EHS----------TII 235 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEeccc-ccc----------eEE
Confidence 34556789999999863 4667889999999999999776 8899999997 899999864 000 123
Q ss_pred EEeecCCCcccEEEEEEcC-CCCEEEEEeCCC-eEEEEecCCCCCce-eeccCCCC
Q 004015 319 YRLQRGLTNAVIQDISFSD-DSNWIMISSSRG-TSHLFAINPLGGSV-NFQPTDAN 371 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DG-TVhIwdl~~~gg~~-~~~~H~~~ 371 (779)
|+ -.........++|++ |-+|+|+-..|. .|.|-|+.-..-++ .++.|...
T Consensus 236 YE--~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~ 289 (364)
T KOG0290|consen 236 YE--DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS 289 (364)
T ss_pred ec--CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc
Confidence 32 233345688999988 667888877664 69999997765554 56888433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=80.63 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.++|+.+++. ..+..+...+..+.|+|||++|+.++.++. .|.+||+..+ ... .+...
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------------~~~---~l~~~-- 364 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------------GER---VLTDT-- 364 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------------CeE---EccCC--
Confidence 577778776654 334445556778899999999998887652 3667776643 111 11111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
......+|+|||++|+..+.++...
T Consensus 365 -~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 365 -GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred -CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1134578999999999888876433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-06 Score=101.85 Aligned_cols=97 Identities=22% Similarity=0.351 Sum_probs=84.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++++..|-.|+||...+..+++..++|.+.|+.++.+....++|+||.|. +|+||.+..+ . ..
T Consensus 204 ~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~-vIrvWrl~~~--------------~-pv 267 (1113)
T KOG0644|consen 204 YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDK-VIRVWRLPDG--------------A-PV 267 (1113)
T ss_pred eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCc-eEEEEecCCC--------------c-hH
Confidence 346678889999999999999999999999999999999999999999996 5999999876 1 22
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+-||++.+ |+.|+|||- ++++.|||+++||..
T Consensus 268 svLrghtga-vtaiafsP~----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 268 SVLRGHTGA-VTAIAFSPR----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHhccccc-eeeeccCcc----ccCCCCCceEecccc
Confidence 344787755 999999995 488999999999986
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=94.14 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC--
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-- 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-- 337 (779)
..+.+.+|++=|+||.|+.||.+||+||+|-+ +.|||.... +.+..++.|++ +.|.++-|=|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~--------------KllhsI~TgHt-aNIFsvKFvP~t 105 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEY--------------KLLHSISTGHT-ANIFSVKFVPYT 105 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcce-EEeecchhc--------------ceeeeeecccc-cceeEEeeeccC
Confidence 34678899999999999999999999999966 899997643 55667777865 5699999988
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 004015 338 DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.|++|..|..|+|||+..
T Consensus 106 nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred CCeEEEeccCcceEEEEeccc
Confidence 567899999999999999985
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.8e-05 Score=86.37 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=74.3
Q ss_pred cccccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCC
Q 004015 240 HFPDADNVGMVIVRDIVSK--------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~--------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
+|+-+...|.|.--+-... +.+.++..|-++|.++.|+|=+..+..++.|.+ ++||.-...
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~---------- 430 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVI---------- 430 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCC----------
Confidence 4566777888766332221 335677899999999999997776665555776 899986522
Q ss_pred CCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCC
Q 004015 312 GTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg 361 (779)
...++.+.+. ...|++++|||-- ..||++..||.+.||||.....
T Consensus 431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 1234444432 2349999999954 5788889999999999976433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.4e-05 Score=86.64 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=78.1
Q ss_pred cCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEEcCCCC---EEEEEeCCCCEEEEEeCCCCCCCC-CCccCC------
Q 004015 244 ADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDPSGI---LLVTASVQGHNINIFKIIPGILGT-SSACDA------ 311 (779)
Q Consensus 244 ~~~dG~V~VwDl~--s~~~v~~f~aHt~~IsaLaFSPdG~---lLATaS~DGt~I~Vwdi~~~~~g~-~s~~~~------ 311 (779)
+..+-.|.||.-. +.+.++.+++|++.|..|+|..-|. +|||+|.|.. ||||.+...-... -...+.
T Consensus 165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y-IRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY-IRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE-EEEEEEEecCCccccccccccccccC
Confidence 3444566666544 3467889999999999999998765 8899999965 9999987641000 000000
Q ss_pred CCceeEEE---------EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 312 GTSYVHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 312 ~~s~~~l~---------~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
......+. .+.-|+. ..|+++-|+|++..|.++|.|.|+.||.-....|.
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHe-DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi 302 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHE-DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI 302 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcc-cceEEEEEccchhhheecccCcceEEEecCCccce
Confidence 00001111 1223544 34999999999999999999999999987665443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-05 Score=86.01 Aligned_cols=106 Identities=21% Similarity=0.355 Sum_probs=78.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+|.|.|.|..+.+++..|......-..++|+|||++|..++.||. |.++|+.+. +.+.++.-
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~--------------~~v~~i~~ 76 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATG--------------KVVATIKV 76 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSS--------------SEEEEEE-
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcc--------------cEEEEEec
Confidence 346789999999999999999876555456889999999999999986 899999875 45566665
Q ss_pred CCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeecc
Q 004015 324 GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|.. -.++++|+||+|++++. ..+++.|+|..+......+.+
T Consensus 77 G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 77 GGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred CCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 642 56899999999999886 689999999988765555543
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0043 Score=69.22 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCeEEEEECCCC-----cEEEEecc-------CCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCC
Q 004015 247 VGMVIVRDIVSK-----NVIAQFRA-------HKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGT 305 (779)
Q Consensus 247 dG~V~VwDl~s~-----~~v~~f~a-------Ht~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~ 305 (779)
.|.|.+.|+... +.+..+.. ..+.+.-++|+|+|+.|..+.. -++.|-++|..++
T Consensus 214 eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---- 289 (352)
T TIGR02658 214 TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---- 289 (352)
T ss_pred CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----
Confidence 399999996443 33333321 1223445999999998877431 1245888888765
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCceee
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~~~~ 365 (779)
+.+.++.-| ..+..|+||||++ +|.+.+ .+++|.|+|..+.....++
T Consensus 290 ----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 ----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 455555544 3588999999999 777676 5899999999876544443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.001 Score=71.66 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCC-eEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC---CCccCCC------
Q 004015 245 DNVG-MVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT---SSACDAG------ 312 (779)
Q Consensus 245 ~~dG-~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~---~s~~~~~------ 312 (779)
+..| -|||||..+++.+..|+.= ...|.||+|||++.+||.+|+.|| ++||.++...... +|.+-..
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKY 278 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchh
Confidence 3444 4799999999999999833 357999999999999999999998 8999998743211 1111000
Q ss_pred -CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 313 -TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 313 -~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.+.+.+++- ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus 279 ~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 279 FSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 01111122211 0112345788888666777778898777666554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00058 Score=76.39 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=60.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-C-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++.++ . .|.++++..+ ... .+..+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------------~~~---~l~~~- 320 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------------EVR---RLTFR- 320 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------------CEE---EeecC-
Confidence 3578888887654 44455555566789999999888766543 3 3555565432 112 22111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---eEEEEecCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 358 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~ 358 (779)
...+..++|||||++|+.++.++ .|.+|++..
T Consensus 321 -~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 321 -GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred -CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 12356789999999999998876 677777754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.8e-05 Score=84.00 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..++++..||+++......++ ||..-|..|.|+|+-+ +||||++||. |+|||.+.. ...+..
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t-------------k~pv~e 253 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT-------------KFPVQE 253 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC-------------Cccccc
Confidence 34578999999999988777776 9999999999999865 7899999998 899998863 123344
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+. + +.+.|+++.|.| -.+.|.+|++|..|.+|....-.....+
T Consensus 254 l~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 254 LP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred cC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence 43 3 345699999998 4578889999999999988665544444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.2e-05 Score=85.24 Aligned_cols=189 Identities=16% Similarity=0.248 Sum_probs=125.6
Q ss_pred CEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEe-CCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~-d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|.=++|..|..+..+.-. +.+..|..| ..+|+++. ++.|.+||.++.....+|....++...|+. +.
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~-------~~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG-------DA 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc-------cc
Confidence 34666778888888877764 678888887 56888865 899999999998877777543221111110 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.++.-|.|.. +
T Consensus 228 -~~svTal~F~d---------------------------~---------------------------------------- 239 (703)
T KOG2321|consen 228 -APSVTALKFRD---------------------------D---------------------------------------- 239 (703)
T ss_pred -cCcceEEEecC---------------------------C----------------------------------------
Confidence 00000011110 0
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEEcCC--CCEEEEEeCCCCEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPS--GILLVTASVQGHNINI 295 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt--~~IsaLaFSPd--G~lLATaS~DGt~I~V 295 (779)
|+ +++.+...|.|.|||+++.+++.. +.|. -||..|.|.+. +..|+|. |.++++|
T Consensus 240 ---------------gL---~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~ki 298 (703)
T KOG2321|consen 240 ---------------GL---HVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKI 298 (703)
T ss_pred ---------------ce---eEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec--chHHhhh
Confidence 11 233455679999999999887643 4554 58999999887 4456654 5567999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
||-.++.+ ...+. ....|.++||=|++-+|.++...+.++.|=|..-|..+.|
T Consensus 299 Wd~~~Gk~--------------~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 299 WDECTGKP--------------MASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred cccccCCc--------------eeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 99776511 11111 1234889999999999999999999999999887776655
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.7e-05 Score=83.59 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=61.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..|-..+|||-. ++.+.+-.+|..+|++++|+|| +++|.+|.. + .+ +..
T Consensus 201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~~-------------------- 253 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FSS-------------------- 253 (737)
T ss_pred eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ecC--------------------
Confidence 4556778899999976 4567777899999999999999 888777753 2 33 111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
.+- ..|..++||+||..++.|+..|-+.+
T Consensus 254 p~~----GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 254 PRV----GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCc----cceEEEEEcCCCceeeccccCceEEE
Confidence 111 23889999999999999999987543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0013 Score=74.57 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=37.0
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe--C--CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--A--AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~--d--~~I~IwD~~T~e~ 114 (779)
..|.+||+.+|+......++..+...+|+ ++.|+.+. + ..|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 46999999999865555566666678886 56666533 2 2799999998764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0019 Score=73.09 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=58.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++++..+ ....+ .+ .+.
T Consensus 268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------------~~~~l-t~-~~~- 331 (430)
T PRK00178 268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------------RAERV-TF-VGN- 331 (430)
T ss_pred eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CCC-
Confidence 578889888764 3455565566778999999988766653 33 3455565443 12222 22 121
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-C--eEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR-G--TSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D-G--TVhIwdl~~ 358 (779)
.....+|||||++|+..+.+ + .+.+||+..
T Consensus 332 --~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 332 --YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred --CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 13457899999999988754 3 366677754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=74.56 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=51.2
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 262 AQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 262 ~~f~aHt~~IsaLaFSPdG~lLATaS~D-G-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
..+..+...+...+|||||+.||..+.+ | ..|.+||+..+ .... +..+ ...+.+.+|||||
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g------------~~~~---Lt~~--~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG------------RDYQ---LTTS--PENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC------------CeEE---ccCC--CCCccceEECCCC
Confidence 3444455567789999999998876553 2 35788888764 1222 2122 1235689999999
Q ss_pred CEEEEEeC-C--CeEEEEecCC
Q 004015 340 NWIMISSS-R--GTSHLFAINP 358 (779)
Q Consensus 340 ~~LAtgS~-D--GTVhIwdl~~ 358 (779)
++|+..+. + ..+.+|++..
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CEEEEEECCCCCceEEEEECCC
Confidence 99886544 3 3466666643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0015 Score=75.09 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCC--eEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAA--QVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~--~I~IwD~~T~e~ 114 (779)
..|.+||+.+|+......++....+.+|+ ++.|+++ .++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 46999999998864433455555677885 5656543 233 599999988764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=81.10 Aligned_cols=111 Identities=9% Similarity=0.106 Sum_probs=91.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
+-+...|.|.+|++..++.-+.|. .|.+.|+++..+.+-..|-|++.|++ |-.|+.... .+..
T Consensus 74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~--------------~~~~ 138 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK--------------VIIR 138 (541)
T ss_pred EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc--------------eeee
Confidence 344567899999999999988887 89999999999999999999999987 889998764 4444
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
...-+ +..+.++|.+|||+.++++| ++|++|++++..-...|.+|...
T Consensus 139 ~~~~~--~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 139 IWKEQ--KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eeccC--CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc
Confidence 43322 23489999999999999886 58999999999888899999543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=75.62 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=58.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEE--eCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.|.++|+.+++. ..+..|...+...+|+|||+.|+..+.. |. ..|| |+..+ ....+ ++ .+.
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~-~~Iy~~dl~~g------------~~~~L-t~-~g~ 350 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGK-PQIYRVNLASG------------KVSRL-TF-EGE 350 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECCCC------------CEEEE-ec-CCC
Confidence 577888887754 4455566667789999999988776653 33 4555 55433 12222 22 221
Q ss_pred CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
.....+|||||++|+..+. ++..+||-+...++
T Consensus 351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1345799999999988765 45566665544333
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.8e-05 Score=91.42 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+.+.--|.|.+|+......-..+.+|.+.|-++.|+-||++++|.|+|.+ +++|++.+..... ...
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~-------------~~~ 214 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLG-------------CTG 214 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccC-------------ccc
Confidence 34455688999998843333357899999999999999999999999965 9999998751100 011
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
-|+ .++|+.++|.|. .+++++.|-|+++|+.+
T Consensus 215 -fgH-saRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 215 -FGH-SARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred -ccc-cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 243 578999999998 89999999999999553
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00028 Score=80.54 Aligned_cols=118 Identities=9% Similarity=0.176 Sum_probs=86.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC-
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT- 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t- 326 (779)
-.|.=+++..++-+..|.-..+.++++..++--.|||+|..+|. +-.||-+.-. ..+ .......+-. +-|..
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~ks----rv~-~l~~~~~v~s-~pg~~~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDKS----RVG-TLDAASSVNS-HPGGDA 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEEecchhhh----hhe-eeecccccCC-Cccccc
Confidence 35667788899999999988899999999999999999999997 8999977530 000 0000000011 11222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
...|+++.|+.||-.+|+|++.|.|.||||... .+.-+.-|...++
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELP 273 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccc
Confidence 223999999999999999999999999999875 4556677765544
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=81.19 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=67.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
....+.+|...|..|+|+||+.+|++++.|.. +++||+..+ ..+..+ +.+.+.||-+||.|-+
T Consensus 115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G--------------~l~~~~--~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAG--------------QLLAIL--DDHEHYVQGVAWDPLN 177 (434)
T ss_pred EEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccc--------------eeEeec--cccccccceeecchhh
Confidence 45667789999999999999999999999965 899999876 222222 2233459999999999
Q ss_pred CEEEEEeCCCeEEEEecCCC
Q 004015 340 NWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~ 359 (779)
+||++=|.|...+++.++..
T Consensus 178 qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred hhhhhhccCcccceeeeeee
Confidence 99999999998888887654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=81.62 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=53.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
..+..+++|+++|..++.++....+|...+++++|.|+|-+|++++.||. +++|.+..
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~ 562 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDV 562 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccc
Confidence 45678899999999999999999999999999999999999999999997 89998753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00041 Score=74.72 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=69.1
Q ss_pred CCCCeEEEEECCCCc---EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC----CCCCCccCCCCce-
Q 004015 245 DNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI----LGTSSACDAGTSY- 315 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~---~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~----~g~~s~~~~~~s~- 315 (779)
+....|-||-+.... +-+++ +.+.+.|++|.|.|++-+||+||.|+. .+||...--. +.+.. -+..-..
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~p-Wgsk~PFG 196 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTP-WGSKMPFG 196 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCC-CccCCcHH
Confidence 344455555554322 11223 367889999999999999999999998 7999642110 00000 0000000
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+. .....|..+.|||+|..||-.+.|.++.+=|....
T Consensus 197 ~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 197 QLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1112221 12345899999999999999999999998776544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=77.62 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=62.4
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++.-|.+..||++.++.+.. |++-+++|+.|...|.+.+||+++-|.. +||||+.+. ..++..
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktr--------------kll~kv 328 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTR--------------KLLHKV 328 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccc--------------hhhhhh
Confidence 445568889999999988776 8899999999999999999999999965 999999873 233333
Q ss_pred ecCCCcccEEEEEEcCCCCE
Q 004015 322 QRGLTNAVIQDISFSDDSNW 341 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~ 341 (779)
.- .+.+++|-|.++-.+
T Consensus 329 Yv---Ks~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 329 YV---KSRLTFILLRDDVNI 345 (412)
T ss_pred hh---hccccEEEecCCccc
Confidence 22 234677777776544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.8e-05 Score=80.67 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCe---EEEEEcCCCCEEEEEeCCCCEEEEEeC-CCCCCCCCCccCCCCc
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPI---SALCFDPSGILLVTASVQGHNINIFKI-IPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~I---saLaFSPdG~lLATaS~DGt~I~Vwdi-~~~~~g~~s~~~~~~s 314 (779)
++.+..+.-|++||.-+++.-+.+++ |...+ -+|+|+|||..|..|-. +.|+|||+ +++..-.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~--------- 194 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--RCIRVFDTSRPGRDCP--------- 194 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--ceEEEeeccCCCCCCc---------
Confidence 44556777899999999998888874 54444 46999999999998765 46999999 6652111
Q ss_pred eeEEEEee---cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 315 YVHLYRLQ---RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 315 ~~~l~~l~---rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
..-++. .|. ...|.+++||| |.+.+|.++.-.++-||.-...+....+.+|.+.+.
T Consensus 195 --vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 195 --VYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred --chhhhhcccccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 101111 121 12378999999 667999999999999999887777777788866655
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.5e-05 Score=80.52 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=63.4
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE
Q 004015 263 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 342 (779)
Q Consensus 263 ~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L 342 (779)
.-++| .+|+.|++++||+.|+|||.+...|.|||..++ ....+.. +|. .-+.-+-||||+.+|
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg------------~~~pL~~--~gl--gg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG------------QKIPLIP--KGL--GGFSLLKWSPDGDVL 253 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC------------Ccccccc--cCC--CceeeEEEcCCCCEE
Confidence 34566 699999999999999999998888999999876 2233331 332 237789999999999
Q ss_pred EEEeCCCeEEEEecCC
Q 004015 343 MISSSRGTSHLFAINP 358 (779)
Q Consensus 343 AtgS~DGTVhIwdl~~ 358 (779)
.+++-|++.+||..+.
T Consensus 254 faAt~davfrlw~e~q 269 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQ 269 (445)
T ss_pred EEecccceeeeehhcc
Confidence 9999999999997654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.052 Score=55.52 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=63.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSP----------I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~----------I-saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
+.+...|.|..+|+.+++.+..+..+..+ + ..+.++ +| .+..++.+|..+.+ |+.++
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg--------- 193 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG--------- 193 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT---------
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC---------
Confidence 33445799999999999999888765432 1 233333 55 56666667765666 98876
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+++.. .. .+.. ....++..|.+++.++++++||+.++
T Consensus 194 -----~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 -----EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -----EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred -----CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3334322 11 1222 25678888888889999999999875
|
... |
| >KOG4415 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2e-05 Score=78.57 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.6
Q ss_pred eeeeeeeeeecCC-CcccccCCeeEEEEcccCc
Q 004015 582 LYISEAELQMHPP-RIPLWAKPQIYFQSMMIKD 613 (779)
Q Consensus 582 ~ylSnaEv~~h~~-~~piW~~~~~~F~~m~~~~ 613 (779)
.||++|||.||.+ ||+|||+|||.|+.+....
T Consensus 28 eWl~hVEi~Th~gPHRriWmGPQFef~eih~d~ 60 (247)
T KOG4415|consen 28 EWLPHVEIRTHLGPHRRIWMGPQFEFFEIHEDD 60 (247)
T ss_pred ccccceEEEeccCccceeeecCceeEEEecCCC
Confidence 5999999999999 9999999999999987644
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.7e-05 Score=87.65 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+..+.|||...+..+.++++|+..|.|++|+.||+++|+|+.|.- +.||.-.- +- .|+..++
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~-VI~W~~kl---------------EG--~LkYSH~ 93 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKS-VIIWTSKL---------------EG--ILKYSHN 93 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCcee-EEEecccc---------------cc--eeeeccC
Confidence 357999999999999999999999999999999999999999965 89997432 11 2222332
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..|||+.|.|-...||+++..
T Consensus 94 -D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 94 -DAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred -CeeeEeecCchHHHhhhcchh
Confidence 349999999999999988753
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0032 Score=65.93 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCEEEEEECCCCcEEEEEeCC-CCEEEEEE---cCcEEEEEeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRC---SSRVVAICQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~---s~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.+.+.-||+.+|..-++++.. .-|..|.. ++++|..+-|+++++||..|.+++.++..+.++
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 478999999999999999864 45777777 478999999999999999999999999887654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00051 Score=82.91 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=80.5
Q ss_pred cCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 244 ADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+.|-.+++|++.+.+.+. +.-+|+..|..++|.|+ +|+|++.|-+ .++|+..-. ....|+-+
T Consensus 193 ~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~~~-------------~l~~y~~h 256 (967)
T KOG0974|consen 193 VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVNGT-------------QLEVYDEH 256 (967)
T ss_pred EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecccc-------------eehhhhhh
Confidence 3567789999999987765 66699999999999999 9999999987 799965421 12234444
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+| ..|+.++..++.-++.|++.||++++|++...+..
T Consensus 257 ~g---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 257 SG---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred hh---cceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 44 23999999999999999999999999999775443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=53.26 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=29.8
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+.++ +++. ..|.+|+|+|++++||+++.|++|+|||
T Consensus 4 ~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3344 3433 4599999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=77.27 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=44.0
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--C-cEEEE-EeCCeEEEEeCCCCcEE
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEIE 115 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~-rlLaV-s~d~~I~IwD~~T~e~l 115 (779)
....|.+||+...+.-+.|+. ...+.+++++ + ++|.. .++-+|.+|.+.|.++.
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 346899999999999999987 6789999996 3 45544 68889999999987653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00062 Score=77.29 Aligned_cols=88 Identities=14% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
+..|.+.|--+.-...+...+||.+-|.++.|++...+++||++|=+ ++|||..-. .||+-.
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~G~---------------~Lf~S~-- 224 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQGA---------------NLFTSA-- 224 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecccCc---------------ccccCC--
Confidence 34578888888887778889999999999999999999999999976 999996532 233321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
.+...|++++|.|| +.+|.+|- .|.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred hhccceeeeeeccc-cceeeeee-eeee
Confidence 12235999999999 77777764 3444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.02 Score=62.94 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCccc-EEEEEEcCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSS 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~-I~sIaFSpDg~~LAtgS~ 347 (779)
....+|..+|||++|-.+..--..|-+|.+.+. ..+ |--+.+-.+... -.+..|++++++|+++..
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------------~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------------GGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------------CCE-EEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 467889999999999876654456888888764 011 111111112222 468999999999999887
Q ss_pred CC-eEEEEecCCCCCceeec
Q 004015 348 RG-TSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 348 DG-TVhIwdl~~~gg~~~~~ 366 (779)
|+ +++||.+.+..|..+..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 311 KSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCCcEEEEEEcCCCceEEec
Confidence 64 79999999887776653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0074 Score=69.01 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
......+|||||+.|+..+. +|. .+||.+.....+ ...+ .+..+ ...+...+|||||++||..+.
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g--------~~~~---~lt~~--~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEG--------QSPR---LLTKK--YRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccc--------cceE---EeccC--CCCccceeECCCCCEEEEEEc
Confidence 34466899999998887664 554 566754321000 0111 12111 123568899999999998766
Q ss_pred C---CeEEEEecCCC
Q 004015 348 R---GTSHLFAINPL 359 (779)
Q Consensus 348 D---GTVhIwdl~~~ 359 (779)
+ ..|++||+...
T Consensus 347 ~~g~~~I~v~dl~~g 361 (428)
T PRK01029 347 IKGVRQICVYDLATG 361 (428)
T ss_pred CCCCcEEEEEECCCC
Confidence 4 35788887643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0059 Score=75.23 Aligned_cols=107 Identities=9% Similarity=0.147 Sum_probs=74.4
Q ss_pred CCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 246 NVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
.-+.|..||++....+..++. -.+.|++++.+|-+..|++|...|. +-+||++-. ..+...+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~--------------~~i~sw~~ 1235 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFR--------------VPILSWEH 1235 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce-EEEEEeecC--------------ceeecccC
Confidence 346788999998877666652 3478999999999999999999997 899999865 12222222
Q ss_pred CCCcccEEEEEE---cCCCCEEEEEe--CCCeEEEEecCCCCCceeeccC
Q 004015 324 GLTNAVIQDISF---SDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 324 G~t~a~I~sIaF---SpDg~~LAtgS--~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+.. +.|..++. .|...+..+++ ..+.+-+|++..+.+...+...
T Consensus 1236 P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1236 PAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 221 33444433 44444555444 5778999999998877777543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=87.68 Aligned_cols=91 Identities=19% Similarity=0.375 Sum_probs=67.7
Q ss_pred CCCeEEEEECCC--C-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 246 NVGMVIVRDIVS--K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 246 ~dG~V~VwDl~s--~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.++.+.+||.-- + .++. .+|.+.+++++|-|.-++|.||+.+|. |.|||++.. ...|.
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr------------ql~h~---- 2373 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR------------QLRHT---- 2373 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH------------HHHHH----
Confidence 346778888542 2 2333 899999999999999999999999998 899999853 12221
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++. +. .-.+|.+|+.+|.++||++...+-..++
T Consensus 2374 -------~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2374 -------FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred -------hhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 122 22 4568999999999999999987544333
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.024 Score=62.98 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=65.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.....+|.+..||..+++.+...... ....+. .++..|..++.+|. +..+|..++ ..+++
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG--------------~~~W~ 304 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGV-VVALDRRSG--------------SELWK 304 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCe-EEEEECCCC--------------cEEEc
Confidence 344556889999999999888776521 112222 34566777778887 899998765 33444
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
... .....+.+.+. .+..|.+++.+|.+++|+..++.....+..+
T Consensus 305 ~~~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 305 NDE-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred ccc-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 311 00011112222 4678999999999999998775444444433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0024 Score=71.81 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=79.6
Q ss_pred cccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVG-MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG-~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+-+..+| .+-|||..+++. ..+...-+.|-+|+.+|||++++.|-.... |-+.|+.++ .++.+-+
T Consensus 375 vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididng------------nv~~idk 440 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNG------------NVRLIDK 440 (668)
T ss_pred EEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCC------------CeeEecc
Confidence 3445666 889999988754 556667789999999999999999887765 667788776 3343333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC----eEEEEecCCCCCceeecc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~gg~~~~~~ 367 (779)
-+.| -|++++|+|+++|||.+--+| .|||||+.. +....+.+
T Consensus 441 S~~~----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vTT 486 (668)
T COG4946 441 SEYG----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVTT 486 (668)
T ss_pred cccc----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEecC
Confidence 2223 399999999999999987776 699999964 35555543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.022 Score=65.15 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=37.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeC----CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d----~~I~IwD~~T~e~ 114 (779)
..|.++|+.+|+...-..++..+....|+ ++.|+...+ ..|+++|+.+++.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 36999999999876655677777777785 556665432 5899999988763
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00034 Score=77.10 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=71.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
..+.+|....+ +...+.+|-+-++.|+|+||++++.||+.|++ |+|-..... .-+..+.-|++
T Consensus 132 ~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~--------------f~IesfclGH~- 194 (390)
T KOG3914|consen 132 YSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPAT--------------FVIESFCLGHK- 194 (390)
T ss_pred eeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcc--------------cchhhhccccH-
Confidence 45555655553 44556799999999999999999999999997 788664321 12334444543
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.-|..|+.-++ +.|++||.|+|+++||+..+...
T Consensus 195 eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 34888888754 56899999999999999988665
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00069 Score=82.96 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=73.3
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEE
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 331 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~ 331 (779)
|.. .|..++++..|...|..++.++. +.+++|||.||+ |+||+...-..+. ++.+...++.+ ....+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~~~~-------~s~rS~ltys~--~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLEGEG-------GSARSELTYSP--EGSRVE 1102 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhhcCc-------ceeeeeEEEec--cCCceE
Confidence 443 35689999999999999998775 589999999998 9999987641111 12233233322 234588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 332 DISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 332 sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.+.+.+..+|+++.||.|+++++..+
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 9999999999999999999999999886
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=67.69 Aligned_cols=99 Identities=19% Similarity=0.325 Sum_probs=76.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+...+++|..|+......++.+++-...+..++.+|||++|++||. .|++||+.+. +.+.+
T Consensus 117 iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~k--------------evv~~ 179 (541)
T KOG4547|consen 117 IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETK--------------EVVIT 179 (541)
T ss_pred eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCc--------------eEEEE
Confidence 344567889999999999999999999999999999999999999985 3999999875 33333
Q ss_pred eecCCCcccEEEEEEcCC-----CCEEEEE-eCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDD-----SNWIMIS-SSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpD-----g~~LAtg-S~DGTVhIwdl~~ 358 (779)
| .|+ ...|.+++|--+ |.||.++ -.+.-+.+|-+..
T Consensus 180 f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 F-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred e-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 3 554 456999999887 6676554 3344566777654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0042 Score=71.18 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=42.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CCEEEEEeCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-----GHNINIFKII 299 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-----Gt~I~Vwdi~ 299 (779)
-.|.|-|||+.+.+++..+.+-.. +-..|+|||++++||..- .+.|+||+..
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 458899999999999999987644 457899999999999764 1238999864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00021 Score=79.88 Aligned_cols=106 Identities=10% Similarity=0.269 Sum_probs=87.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.++..|.++--|+.+++.++.|..-.+.+..|+-+|-...+-+|-..|+ |.+|.-..- ..|.+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~sk--------------ePLvK 288 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSK--------------EPLVK 288 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCc--------------chHHH
Confidence 356677899999999999999999988899999999999999999999998 899974431 12222
Q ss_pred e--ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 321 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 321 l--~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+ ++| .|.+||+.++|+|+||++.|..++||||..+....+.
T Consensus 289 iLcH~g----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 289 ILCHRG----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred HHhcCC----CcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 2 233 4899999999999999999999999999988644443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.001 Score=72.00 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=67.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..+++|.+|++...+--..+..-..++++++|||||+ +|.|...|-+ |.||.+.+. .+.++. .
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~------------~~~~~~---~ 131 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQ------------KGYLLP---H 131 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccc------------eeEEec---c
Confidence 4578999999999888888888888999999999996 5666666765 899999874 122221 1
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+..++|.|||+|.|+.+.+
T Consensus 132 --pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 132 --PKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred --cccCceeEEECCCCceeeeeecc
Confidence 22347899999999999999876
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=71.31 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=83.8
Q ss_pred ccccCCCCeEEEEECCC------CcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 241 FPDADNVGMVIVRDIVS------KNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s------~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
++++..|-.++||.+.. .+++..+. .|.+.|.||+|+-..+.|.+|..+|+ |..-|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence 45677788999999863 35665554 55689999999999999999999998 678899864
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..+|.+........|+.+.-+|-...||+.+.+|.|.+||+....
T Consensus 138 --qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 --QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred --eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 456665433333359999999999999999999999999997654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00066 Score=77.27 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=82.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSP--dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.+++++.|-.+.|||.-..+++..+. +|+..|-+++|=| +.++++||+.|.. |+|||+.....+. +....
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-i~lfdl~~~~~~~------~d~~~ 136 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-IKLFDLDSSKEGG------MDHGM 136 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce-EEEEecccccccc------cccCc
Confidence 35778888999999999988888887 9999999999999 4679999999965 9999997531110 00000
Q ss_pred EEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~ 358 (779)
.......+.+...|..|+-.|++ .-|-+++.|||++-+|+..
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 00011122223347789999999 7788999999999999965
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0063 Score=66.41 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCCCCeEEEE--ECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVR--DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~Vw--Dl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..|.|.+- +...-.++.++.+|+++|.+++|+|.-.+|.+++.|- .+.+||+--. . ...|.+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-~vi~wdigg~-~------------g~~~el 236 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH-SVIMWDIGGR-K------------GTAYEL 236 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC-ceEEEeccCC-c------------ceeeee
Confidence 4455656553 3345578899999999999999999999999999984 5899998643 1 123444
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+ + ..+|+.++.-+--+.+.+.+.||.|-+|+.+-.
T Consensus 237 ~g-h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 QG-H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cc-c-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 33 2 345888888888899999999999999999754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.04 Score=69.87 Aligned_cols=74 Identities=9% Similarity=0.102 Sum_probs=52.5
Q ss_pred EEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-----------CcccEEEEEEcCCCC
Q 004015 272 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSN 340 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-----------t~a~I~sIaFSpDg~ 340 (779)
..|+|+++|.++++-+.++ .|++||..++. ...+. ..|. .-.....|++++||+
T Consensus 807 ~Gvavd~dG~LYVADs~N~-rIrviD~~tg~------------v~tia--G~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNH-KIKKLDPATKR------------VTTLA--GTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred ceeeEeCCCcEEEEECCCC-EEEEEECCCCe------------EEEEe--ccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 4799999999877766665 49999987641 01000 0110 001357899999999
Q ss_pred EEEEEeCCCeEEEEecCCCC
Q 004015 341 WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~~g 360 (779)
.+++-+.+++|++||+.+..
T Consensus 872 lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCEEEEEECCCCc
Confidence 99999999999999997753
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00078 Score=46.30 Aligned_cols=38 Identities=26% Similarity=0.690 Sum_probs=34.3
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.++..+.+|...|.+++|++++.++++++.||+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 467778899999999999999999999999997 89996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.14 Score=56.15 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=61.8
Q ss_pred eEEEEECCCCcEEEE--ec--cCCCCeEEEEEcCCCCEEEEEeCCCC------EEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 249 MVIVRDIVSKNVIAQ--FR--AHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~--f~--aHt~~IsaLaFSPdG~lLATaS~DGt------~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+..-|..+++++.+ +. -|..+|.-|+++++|+.+.-.=.+|- .+-+|+-.. . ..+
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-------------~-~~~ 204 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-------------A-LRL 204 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-------------c-cee
Confidence 455677888888777 52 37889999999999988776655543 111111110 0 001
Q ss_pred EEee----cCCCcccEEEEEEcCCCCEEEEEeCCC-eEEEEecCCC
Q 004015 319 YRLQ----RGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPL 359 (779)
Q Consensus 319 ~~l~----rG~t~a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~~~ 359 (779)
.... +.. ..-|-+|||++|+.++|++|-+| .+.+||..+.
T Consensus 205 ~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 205 LPAPEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ccCChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 1110 111 12378999999999998888775 7999999875
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.05 Score=59.88 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCC
Q 004015 271 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRG 349 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DG 349 (779)
+-+..|+|+|++|++.+-.-..|.+|++..+.... ...+.+..|.- -.-|+|+|++++.-+.+ .++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----------~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----------ADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----------ccccccCCCCC---cceEEEcCCCcEEEEEeccCC
Confidence 55688999999999988754568999998652111 11223344432 45799999999976554 599
Q ss_pred eEEEEecCCCCC-ceeeccCCCCCCccCCCcCCcceecCCCCCCCCCCCCccccCC
Q 004015 350 TSHLFAINPLGG-SVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASG 404 (779)
Q Consensus 350 TVhIwdl~~~gg-~~~~~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~ 404 (779)
||-+|.+++..+ .-.++.+..-+..|.|-.-...++.+ .|+.-|+++|
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-------~dGrFLYasN 262 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-------PDGRFLYASN 262 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-------CCCCEEEEec
Confidence 999999999744 44668887666655543333333333 3444455554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0071 Score=72.62 Aligned_cols=181 Identities=13% Similarity=0.125 Sum_probs=121.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC-CEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s-~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
..+--+|+++.+..+.....+ .|.=++.|++++-+ ...++|.+-|..+++.++++..|..- +..+.
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s------------iSDfD 224 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS------------ISDFD 224 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc------------eeeee
Confidence 557789999999888888754 68888888777766 56789999999999999999988421 11122
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
+. |.++.....+.
T Consensus 225 v~------------------------------------GNlLitCG~S~------------------------------- 237 (1118)
T KOG1275|consen 225 VQ------------------------------------GNLLITCGYSM------------------------------- 237 (1118)
T ss_pred cc------------------------------------CCeEEEeeccc-------------------------------
Confidence 11 11111100000
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~ 300 (779)
....-.-|--|+|||++..+.+.-+.-|.+| .-+.|.|. -+.||.+|..|. +.+-|..+
T Consensus 238 ------------------R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~ 297 (1118)
T KOG1275|consen 238 ------------------RRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTAT 297 (1118)
T ss_pred ------------------ccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccc
Confidence 0000012456899999998887777767666 56899997 457888888887 77777433
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. +.+.....++.. ....|..++||+.++.+|.|..+|.|++|.
T Consensus 298 l-------sNP~~~~~~v~p-----~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 L-------SNPPAGVKMVNP-----NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred c-------CCCccceeEEcc-----CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 001111222111 112388999999999999999999999998
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0056 Score=70.85 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred EEEECCCCcE--EEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 251 IVRDIVSKNV--IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 251 ~VwDl~s~~~--v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
.+|++..++. ++... .+.+.|.|.+++|+.+.|+.|..||. |.+||...+ ..+.. +. .
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~-------------~t~~~---ka--~ 299 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRG-------------VTLLA---KA--E 299 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCC-------------eeeee---ee--c
Confidence 5677765532 22222 67889999999999999999999998 899998764 11111 11 1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
-....++|+|||.+|++|+..|.+.+||+.-.
T Consensus 300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 12678999999999999999999999999764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.088 Score=58.48 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=60.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCC-CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~-~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.....+|.|..+|..+++.+..+..... ....... .|.+|.+++.+|. +.+||..++ +.+
T Consensus 281 ~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG--------------~~~ 343 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDG--------------SFV 343 (377)
T ss_pred EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEE
Confidence 344456789999999999988876642211 2222222 4668888999997 899998765 344
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+++.-+.. ....+.++. ++ .|.+++.||+++.|.
T Consensus 344 ~~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 344 ARLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 55542221 011222333 33 478999999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=65.69 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=74.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
|.|.|.|..+.+.+.++..=..|-- + +||||+.|..|.. +...|.|||+.+. ..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------------~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------------LPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------------cEE
Confidence 8999999999999999884444433 4 9999999988877 5556999999875 333
Q ss_pred EEeecCCC-----cccEEEEEEcCCCCEEEEEe-C-CCeEEEEecCCCCCceee
Q 004015 319 YRLQRGLT-----NAVIQDISFSDDSNWIMISS-S-RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 319 ~~l~rG~t-----~a~I~sIaFSpDg~~LAtgS-~-DGTVhIwdl~~~gg~~~~ 365 (779)
.++.-+.. ...-..+++||||++|.+.. . +..|-|.|+....-...+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 34432211 11234799999999999887 4 689999999876443333
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.001 Score=73.03 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=72.2
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
+.+.+.+|++-|++|.||.+|++||+|+.|-+ ++||.+........ -+.+ .+....+...|.|++|.-..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~-~~~W~~de~~~~k~--------~KPI-~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMH-GRVWNVDELMVRKT--------PKPI-GVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcce-eeeechHHHHhhcC--------CCCc-eeccCccccceEEEEEccCC
Confidence 34556799999999999999999999999987 89998764200000 0111 12112222459999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
++|.+|..+++|.+-|+.+......+ .|.+
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~ 147 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENN 147 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccC
Confidence 99999999999999999886544443 4444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0074 Score=65.37 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=78.4
Q ss_pred cCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+...|.||..... +...+++.|...|+.|+|+|.+..|+|++.|.+ -.||....+..+. ....|.+
T Consensus 28 ~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~~Wk--------ptlvLlR 98 (361)
T KOG1523|consen 28 SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGGTWK--------PTLVLLR 98 (361)
T ss_pred ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCCeec--------cceeEEE
Confidence 345567889887764 478899999999999999999999999999976 7999875441111 0122334
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.|. .++|-|||.+..||+||.-..|-||=++.
T Consensus 99 iNrA-----At~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 99 INRA-----ATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eccc-----eeeEeecCcCceEEeccCccEEEEEEEec
Confidence 4332 68999999999999999999999998764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.64 Score=51.48 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee--EEEEeecCCCcccEEEEEEcCCCCEEEEE-e
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV--HLYRLQRGLTNAVIQDISFSDDSNWIMIS-S 346 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~--~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S 346 (779)
..-++.|+|||++|++++.....|.+|++... . ..+. ....+..|. --..++|+||++++.+. -
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~-~---------~~l~~~~~~~~~~G~---GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD-T---------GKLTPVDSIKVPPGS---GPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT-S----------TEEEEEEEECSTTS---SEEEEEE-TTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------ceEEEeeccccccCC---CCcEEEEcCCcCEEEEecC
Confidence 46689999999999998876667999998764 0 0121 222344443 25789999999988655 4
Q ss_pred CCCeEEEEecCCCCCc
Q 004015 347 SRGTSHLFAINPLGGS 362 (779)
Q Consensus 347 ~DGTVhIwdl~~~gg~ 362 (779)
.+++|.+|++....+.
T Consensus 212 ~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGS 227 (345)
T ss_dssp TTTEEEEEEEETTTTE
T ss_pred CCCcEEEEeecccCCc
Confidence 5789999999854443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=68.92 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=74.8
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
|++.+-.+.+.+.-+..|...|..|+|||... +|..+|.+. .|+|+|+.+. .+...|..+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~n-kiki~dlet~------------~~vssy~a~-----~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGN-KIKIMDLETS------------CVVSSYIAY-----N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCc-eEEEEecccc------------eeeeheecc-----C
Confidence 77777777777777789999999999999877 788888875 5999999975 234445543 3
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEecCCCCCce
Q 004015 329 VIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 329 ~I~sIaFSpDg~~-LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
.|+++||.-|... |..|-.+|.|.|||+....++.
T Consensus 237 ~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 237 QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred CceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 4999999887765 5556678999999998776554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.28 Score=56.23 Aligned_cols=81 Identities=23% Similarity=0.175 Sum_probs=47.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.++|+.+++. ..+..+........|+|||+.|+-.+. .|. .|.+.|+..+ ..+.+ .. .|.
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------------~~~rl-t~-~g~ 321 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------------SVEQV-VF-HGK 321 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEeC-cc-CCC
Confidence 4678888877753 334434333344689999997776664 343 2444455443 12221 11 122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
...+|||||++||..+..
T Consensus 322 -----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 -----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred -----cCceECCCCCEEEEEEcC
Confidence 124899999999988765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=63.27 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=73.2
Q ss_pred cCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+...|.+.+-+.....+ ++..++|.-++...+|+.. -.++.||++||. +.-||++.. ...++.
T Consensus 139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------------~~~i~~ 204 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------------KTFIWH 204 (339)
T ss_pred EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------------cceeee
Confidence 34456666555444433 4588999999999999874 568999999997 899999831 123333
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
-.+-++ +-|.+|.=|| +..+||+|+.|-+|++||...-+.
T Consensus 205 n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 205 NSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred cceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 222222 3377887776 688999999999999999975543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0097 Score=65.01 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred cccccCCCCeEEEEECCCCcEE----------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVI----------------AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL 303 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v----------------~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~ 303 (779)
.|+-.+..|.|++.|++...+. .-|..-..+|+.++|+++|+|++|-+-- .++|||+... .
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl--tvk~wD~nme-~ 304 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL--TVKLWDLNME-A 304 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc--eeEEEecccc-C
Confidence 3455667899999999853211 1122223589999999999999996654 4999999543 1
Q ss_pred CCCCccCCCCceeEEEEeecCC---------Ccc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 304 GTSSACDAGTSYVHLYRLQRGL---------TNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~---------t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+ ...|.++.-. ..+ .=..++||-++.+++|||-..-++||++..+
T Consensus 305 ~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 305 KP----------VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred Cc----------ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11 1122222100 001 1246999999999999999999999997654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.13 Score=55.09 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=44.6
Q ss_pred cccccCCCCeEEEEECCCCcEEE-----EeccCCCCeEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIA-----QFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~-----~f~aHt~~IsaLaFSPdG~--lLATaS~DGt~I~Vwdi~~~ 301 (779)
.|+.+.+||.+-|||++...... +-..|.++|..+.|++-|- ||.-.-.-+. ++|-|++++
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~ 284 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNY 284 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccC
Confidence 56778899999999999764322 2236889999999999775 3444333444 789998876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.022 Score=65.53 Aligned_cols=90 Identities=13% Similarity=0.325 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
-..+|.|||++.. ++..|. .++=+++-|||.|.+|+-|+.+ |. |-|||+... ..+-++.
T Consensus 292 MPAkvtifnlr~~-~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~--------------K~i~~~~ 353 (566)
T KOG2315|consen 292 MPAKVTIFNLRGK-PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNR--------------KLIAKFK 353 (566)
T ss_pred ccceEEEEcCCCC-EeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccch--------------hhccccc
Confidence 4568899998754 555553 5677889999999999999874 55 899998753 3333332
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeC------CCeEEEEecC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 357 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~------DGTVhIwdl~ 357 (779)
- +.-+=+.|+|||+||.|++. |..++||++.
T Consensus 354 a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 A----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred c----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 1 12345899999999999886 6889999984
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.27 Score=53.72 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=59.4
Q ss_pred CeEEEEECCCCc-EEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKN-VIA--QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~-~v~--~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
+.|.+|++...+ .+. .+..+ ..|++|..- +.+++.|+.... +.++..... ...+..+.|-
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~--~~~I~vgD~~~s-v~~~~~~~~-------------~~~l~~va~d 169 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVF--KNYILVGDAMKS-VSLLRYDEE-------------NNKLILVARD 169 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEE--TTEEEEEESSSS-EEEEEEETT-------------TE-EEEEEEE
T ss_pred CEEEEEEccCcccchhhheecce-EEEEEEecc--ccEEEEEEcccC-EEEEEEEcc-------------CCEEEEEEec
Confidence 578888887766 332 22222 255555544 558888888654 677644331 1223344444
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.....+.+++|-+|++.++++..+|.+++|.+.+.
T Consensus 170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 44445899999877789999999999999999653
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=48.54 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCeEEEEECC-----CCcEEEEe--ccC-CCCeEEEEEcCCCCEEEEEeCC-CC---------EEEEEeCCCCCCC--
Q 004015 245 DNVGMVIVRDIV-----SKNVIAQF--RAH-KSPISALCFDPSGILLVTASVQ-GH---------NINIFKIIPGILG-- 304 (779)
Q Consensus 245 ~~dG~V~VwDl~-----s~~~v~~f--~aH-t~~IsaLaFSPdG~lLATaS~D-Gt---------~I~Vwdi~~~~~g-- 304 (779)
...|.++=|-+. ..+....| ..| ...|+++.|+|.-++|+.|+.. .. -+.-|++..+.+-
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 455655555432 22333333 344 6789999999998888776542 11 1567777654220
Q ss_pred C-CCccCCC------CceeEEEEe----ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 305 T-SSACDAG------TSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 305 ~-~s~~~~~------~s~~~l~~l----~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
. .+..+.. .....+..+ +.+.....|..|+.||||+.||+...+|.+-||++-.......+
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 0 0000000 011111111 12222334999999999999999999999999999665444343
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.7 Score=47.53 Aligned_cols=50 Identities=6% Similarity=0.246 Sum_probs=40.8
Q ss_pred CEEEEEECCCC-------cEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCCc
Q 004015 64 TVVHFYSLRSQ-------SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLE 113 (779)
Q Consensus 64 ~tVrIWDL~Tg-------e~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~e 113 (779)
+.|.++++... +.++...++++|++|+.-+..|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999985 455666779999999986555888889999999998777
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.61 Score=58.61 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=66.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV--QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~--DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
-.++||+-. +....+-+.-.+--.+|+|-|+|.++|+.-. +.+.|..|.-. | .-+--+.++...
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G------------LrhgeF~l~~~~ 302 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G------------LRHGEFTLRFDP 302 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C------------cEeeeEecCCCC
Confidence 589999976 4444443333333446999999999999876 23446666532 2 223345554322
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
....|..++|++||..||+...|. |.+|-...|.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 334599999999999999988665 9999998874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.02 Score=65.53 Aligned_cols=125 Identities=20% Similarity=0.261 Sum_probs=83.9
Q ss_pred cccccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-----CCC-
Q 004015 240 HFPDADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTS- 306 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s-------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-----g~~- 306 (779)
.|++++.|.+|++|.++. ..+..++++|+.+|..+.|-.|-+++|++ ||- |++||-.-+-. +..
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g-iHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG-IHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc-ceeecccccchhHhhhcCcc
Confidence 467788999999999874 34778889999999999999999999875 454 89999654311 000
Q ss_pred -Cc------------------cCCCCcee----------EEEEeec-CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 307 -SA------------------CDAGTSYV----------HLYRLQR-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 307 -s~------------------~~~~~s~~----------~l~~l~r-G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
++ +....+++ ..++... ...++-+.+++..+.|+|+|++-+.|++.+.|.
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 00 00001111 1111110 111244789999999999999999999999998
Q ss_pred CCCCCceeecc
Q 004015 357 NPLGGSVNFQP 367 (779)
Q Consensus 357 ~~~gg~~~~~~ 367 (779)
..+.-.-.++.
T Consensus 906 R~G~vINswrp 916 (1034)
T KOG4190|consen 906 RNGKVINSWRP 916 (1034)
T ss_pred CCCceeccCCc
Confidence 77644444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.02 E-value=2.3 Score=54.46 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec--CC----CcccEEEEEEcCCCCEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR--GL----TNAVIQDISFSDDSNWIM 343 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r--G~----t~a~I~sIaFSpDg~~LA 343 (779)
....|+|+|+|+.|..++.+.+.|++||+.++.. .....+.......++.+-. |. .-..-..|+|++||+.++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 3456999999997766666656699999875410 0000000000000111100 00 001135899999999999
Q ss_pred EEeCCCeEEEEecCCC
Q 004015 344 ISSSRGTSHLFAINPL 359 (779)
Q Consensus 344 tgS~DGTVhIwdl~~~ 359 (779)
+-+.+++|++||....
T Consensus 820 ADs~N~rIrviD~~tg 835 (1057)
T PLN02919 820 ADSYNHKIKKLDPATK 835 (1057)
T ss_pred EECCCCEEEEEECCCC
Confidence 9999999999998653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.12 Score=55.35 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=68.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+++.+-+..+.+...+++.- .+..+++|+|++++++.++-.. |-.|.|... +..++. ..-..
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~~--~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------------sey~~~-~~~a~ 201 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQNL--TQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------------SEYIEN-IYEAP 201 (344)
T ss_pred cceeEEEEecCcccceeecccc--ceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------------cceeee-eEecc
Confidence 3455555555555544444432 2888999999999999877654 777887653 112222 11122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
+...=.+.+||.....+|+++.||++-|||+..-+-+..
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 222246899999999999999999999999987654433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.9 Score=43.57 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=60.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
|.|..++.. ++....+ ..-..-+.|+|+|||+.|..+......|..|++... +. . ....+.+..+..+.
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~--~~-~----~~~~~~~~~~~~~~-- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD--GG-E----LSNRRVFIDFPGGP-- 183 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT--TC-C----EEEEEEEEE-SSSS--
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc--cc-c----eeeeeeEEEcCCCC--
Confidence 667777777 4432222 223456889999999988766665555777777532 00 0 00112233333221
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
...-.+++..+|++.++....+.|.+|+-.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 235679999999998888888999998865
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.92 Score=48.98 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 267 HKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 267 Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
-..-|..|+.||||++||+....|. |-+|++..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCe-EEEEecCc
Confidence 3467999999999999999999998 89999975
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.054 Score=63.33 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-cCCCcccE-EEEEEcCCCCEEEEEeC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVI-QDISFSDDSNWIMISSS 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG~t~a~I-~sIaFSpDg~~LAtgS~ 347 (779)
.|--+-|+|.=.++|++-.+|+ +-+.++. . +.++++. +|.. + .++||.|||+.||+|-.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~--------------qRlwtip~p~~~---v~~sL~W~~DGkllaVg~k 82 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W--------------QRLWTIPIPGEN---VTASLCWRPDGKLLAVGFK 82 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec-c--------------ceeEeccCCCCc---cceeeeecCCCCEEEEEec
Confidence 4566889999999999999998 6777765 2 4667775 4432 3 49999999999999999
Q ss_pred CCeEEEEecCCCCCceee
Q 004015 348 RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 348 DGTVhIwdl~~~gg~~~~ 365 (779)
||||+|-|+.++++...+
T Consensus 83 dG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 83 DGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred CCeEEEEEccCCCceecc
Confidence 999999999998776663
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.098 Score=60.39 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCC---eEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSP---ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~---IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...+.|||+.+|...+.|..-.++ ..-.+||.|++++|--..+ .|.||+.... .++.. +
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf---------------~lld~-K 342 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--SISIYETPSF---------------MLLDK-K 342 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc--eEEEEecCce---------------eeecc-c
Confidence 347999999999999999874332 2337899999999987665 4899987542 23332 2
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...-..|.+..|||.+..||.-+-
T Consensus 343 slki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 343 SLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccCCccccCcccCCCcceEEEEcc
Confidence 222234899999999999986543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.4 Score=47.74 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEE--EEEcCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~s--V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
.+.|.-+|.+||+.+.+.+....+.+ +...+.+++.+.++.|+.+|+.|++.+.....
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 46788999999999999888665543 12245555556788999999999999988864
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.32 Score=58.20 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=79.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------C---CEEEEEeCCCCCCCCCCccC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------G---HNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D------G---t~I~Vwdi~~~~~g~~s~~~ 310 (779)
.++-+.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--...++ +.+.. | +.+.|-|+++|.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslv-Sfsys~~n~~sg~vrN~l~vtdLrtGl-------- 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV-SFSYSHVNSASGGVRNDLVVTDLRTGL-------- 509 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEE-EeeeccccccccceeeeEEEEEccccc--------
Confidence 34567789999999999999999999999999999997766544 33321 1 124566777761
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..-++-.++...+.|.-|--|.-++|||+.-.|.-+.|||+...
T Consensus 510 -----sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -----SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -----ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 11122224444566999999999999999999999999999654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.039 Score=60.51 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=72.9
Q ss_pred cccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 242 PDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
..+.-.|.|.++|++.+ .--++---|.++|++|..=. ++++|+..+-+|+ |++||.+....+. ..
T Consensus 268 ~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~---------~V 337 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKK---------SV 337 (425)
T ss_pred EecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhccc---------ce
Confidence 34677899999999875 22333335889999988766 8899999999998 9999987531111 02
Q ss_pred EEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 317 HLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 317 ~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..| .|+.+. .-.-+-..+....|+++++|--.+||.+..+
T Consensus 338 ~qY---eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 338 MQY---EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eee---ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 223 233221 1123445677788899999999999999864
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.057 Score=59.25 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=78.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+-.|-+-|+.++- ...|. -++.|.++.|.-.+.+|..|...|. |-+.|++....|+ .+....+..+
T Consensus 232 ~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~---------~~~a~rlyh~- 298 (425)
T KOG2695|consen 232 LSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGN---------GWCAQRLYHD- 298 (425)
T ss_pred ccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCC---------CcceEEEEcC-
Confidence 44567777887763 23444 5678999999999999999999997 8899998752222 2233333222
Q ss_pred CcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC---ceeeccCCCCCC
Q 004015 326 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG---SVNFQPTDANFT 373 (779)
Q Consensus 326 t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg---~~~~~~H~~~~~ 373 (779)
..|+++..=. +.++|++++++|+|++||+.-..+ .....+|.+...
T Consensus 299 --Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a 348 (425)
T KOG2695|consen 299 --SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA 348 (425)
T ss_pred --cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc
Confidence 2244443322 478999999999999999987766 556678877544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=3.3 Score=45.68 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=58.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
|.|..+|. .+..++.+..|-.--+.|+|||||+.|-.++.....|.-|++... .+... +. ..........|.
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~g~~~--~~--~~~~~~~~~~G~-- 214 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-TGPIG--GR--RGFVDFDEEPGL-- 214 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-cCccC--Cc--ceEEEccCCCCC--
Confidence 54444444 456666666665556679999999999888887665777766531 11111 00 001111112232
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC-eEEEEecC
Q 004015 328 AVIQDISFSDDSNWIMISSSRG-TSHLFAIN 357 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DG-TVhIwdl~ 357 (779)
--.++...||.+.+++-..| .|++|+-.
T Consensus 215 --PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 215 --PDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred --CCceEEeCCCCEEEecccCCceEEEECCC
Confidence 23577778888776555554 78888776
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.8 Score=44.15 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=44.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEE--EEEcCcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~s--V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
+.|..||..+|+.+.++.++.++.. +...+++++++.++.|++||+.|++.++++
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee
Confidence 7799999999999999998655432 233466666677889999999999999985
|
... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.036 Score=37.64 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=25.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
..|.+++|+++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.64 Score=53.49 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=117.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCC--eE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSP--IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~--Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+.|||+.++..+..|..-..+ .. -++|+-|.+|+|=-. |+.++|+++... ...+....++
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~t~n-----------~~~~p~~~lr-- 172 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEITDN-----------IEEHPFKNLR-- 172 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEecCCc-----------cccCchhhcc--
Confidence 37899999999999999977666 55 799999999887653 446899997321 0112222332
Q ss_pred CCcccEEEEEEcCCCCE--EE-----EEeCCCeEEEEecCCCCCceeeccCCC-CCCccCCCcCCcceecCCCCCCCCCC
Q 004015 325 LTNAVIQDISFSDDSNW--IM-----ISSSRGTSHLFAINPLGGSVNFQPTDA-NFTTKHGAMAKSGVRWPPNLGLQMPN 396 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~--LA-----tgS~DGTVhIwdl~~~gg~~~~~~H~~-~~~~~~~~~~~~~~r~~~~s~l~~~~ 396 (779)
...|++.+|||-+.. || ....+++++||.|.... .+.+|+- ... +.-+.|........+.
T Consensus 173 --~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---~l~tk~lfk~~-------~~qLkW~~~g~~ll~l 240 (561)
T COG5354 173 --PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---VLVTKNLFKVS-------GVQLKWQVLGKYLLVL 240 (561)
T ss_pred --ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---eeeeeeeEeec-------ccEEEEecCCceEEEE
Confidence 123899999997443 44 34567889999996332 2222210 000 0112222222111111
Q ss_pred CCccccCCCCe----eeeeeEEeecCCC----CCCCcccCccccccCCc-CCCCCceeee--eeccCCCCcccccCCccc
Q 004015 397 QQSLCASGPPV----TLSVVSRIRNGNN----GWRGTVSGAAAAATGRV-SSLSGAIASS--FHNCKGNSETYAAGSSLK 465 (779)
Q Consensus 397 ~~~l~~~~pp~----~ls~v~ri~~~~~----~~~~~v~~~a~~~~g~~-~~~~g~~~~~--~~~~~~~~~~~~~~~~~~ 465 (779)
.++-..+|-.. .|- +-||...+- +..++|...+-.+.++. ...+|+-+++ +|+-.++--++ ...
T Consensus 241 ~~t~~ksnKsyfgesnLy-l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~----~Pe 315 (561)
T COG5354 241 VMTHTKSNKSYFGESNLY-LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY----FPE 315 (561)
T ss_pred EEEeeecccceeccceEE-EEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEe----cCC
Confidence 11111222111 122 336665432 45788999988888777 7778877764 44444443222 233
Q ss_pred ccccEEEEccCccEEEE
Q 004015 466 IKNHLLVFSPSGCMIQY 482 (779)
Q Consensus 466 ~~~~l~V~~p~G~liqy 482 (779)
...+-++|+|+++.|-.
T Consensus 316 ~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 316 QKRNTIFFSPHERYILF 332 (561)
T ss_pred cccccccccCcccEEEE
Confidence 56778899999987764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.049 Score=57.89 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred cccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCC--CCC-c-cCCC--C
Q 004015 242 PDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILG--TSS-A-CDAG--T 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~-~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g--~~s-~-~~~~--~ 313 (779)
..+..+|.|.|||.+... ++..+++|+.+|.-+-|.| ++..|.|+|.||. +--||..+...+ +.+ . ..|. .
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCC
Confidence 456789999999999875 4566789999999999999 5889999999997 677887632111 000 0 0000 0
Q ss_pred ceeEEEEeecCCCcccEEEE-EEcCCCCEEEEEeCCCeEEEEe
Q 004015 314 SYVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sI-aFSpDg~~LAtgS~DGTVhIwd 355 (779)
.++.+.++. +.-+....+| .|.--|..|++|++-+-|++++
T Consensus 275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111111221 1111222222 2444566788888888888765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.095 Score=62.72 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=70.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++-+...|.|.+++....- .+...|... +-+|.++||+|.||+ |.|..+.+. .-.+.+
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~------------~~~~~~ 109 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD------------DEITQY 109 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC------------ccceeE
Confidence 45667788999999987543 555566554 788999999999998 788877664 223456
Q ss_pred EeecCCCcccEEEEEEcCC-----CCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDD-----SNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpD-----g~~LAtgS~DGTVhIwdl~~~g 360 (779)
.++| +|.+|+|+|| ++.+++|+..| +.++.-+-.|
T Consensus 110 df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 110 DFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 6655 4889999999 78899999999 7777544333
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.86 E-value=7 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 267 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 267 Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-.+.|-+|+|+++|.++|..|-.|..+.+||..++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 34689999999999999999999999999999876
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.03 Score=64.14 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=61.4
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
.+..|.+|+..|.+++--.+..-+++||.|++ +++|.+++.-. ..++..+.++... +...|.++.|=.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD-------~~~tsaCQfTY~a--Hkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGD-------EIGTSACQFTYQA--HKKPIHDIGFLADL 796 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccC-------ccccceeeeEhhh--ccCcccceeeeecc
Confidence 45778899999999876667777899999987 89999987511 1111122233321 22359999999999
Q ss_pred CEEEEEeCCCeEEEEec
Q 004015 340 NWIMISSSRGTSHLFAI 356 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl 356 (779)
+++|+ -||-+|+||-
T Consensus 797 r~i~S--cD~giHlWDP 811 (1034)
T KOG4190|consen 797 RSIAS--CDGGIHLWDP 811 (1034)
T ss_pred ceeee--ccCcceeecc
Confidence 98765 5899999995
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.4 Score=45.55 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=35.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--------E----EE-EEEcCcEEEEEeCCeEEEEeCCCCcEEEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP--------I----YS-VRCSSRVVAICQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~--------V----~s-V~~s~rlLaVs~d~~I~IwD~~T~e~l~tl 118 (779)
+.|.-+|+.+|+.+.+.++..+ . .. +...+.+++++.++.++++|+.+++.+.+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4566778888887776654211 0 01 112455566677888999999988876654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.14 Score=62.11 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEEE----------eCCeEEEEeCCCCcEE
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAIC----------QAAQVHCFDAATLEIE 115 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaVs----------~d~~I~IwD~~T~e~l 115 (779)
+-++|.+-|+++-+.+|++.. ...|.++...+++|+.+ .|.-|.|||++.++.+
T Consensus 195 t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 195 TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 348899999999999999985 67888888887776653 2446889999988744
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.11 Score=59.95 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR- 348 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D- 348 (779)
.=+.+.|||-|+||+|--..| |.+|--... ..+ +|-.+ ..|+-+.|||.-+||++=|.-
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G--I~lWGG~~f--------------~r~---~RF~H-p~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG--IALWGGESF--------------DRI---QRFYH-PGVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred eeeeEEecCCceEEEEEeccc--eeeecCccH--------------HHH---HhccC-CCceeeecCCccceEEEecCCc
Confidence 346699999999999988887 789953321 222 22222 238999999999999987652
Q ss_pred ----------CeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCC
Q 004015 349 ----------GTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 349 ----------GTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
..+.||||.++....+|..- +.+.++-+++||+..-
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~------~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVI------KSPYLKWPIFRWSHDD 317 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceecc------CCCccccceEEeccCC
Confidence 46899999987666565432 1244556788888764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.14 Score=40.88 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=28.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+.|..++|||....||+++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999993
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.87 Score=52.38 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCC----eEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA----QVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~----~I~IwD~~T~e~ 114 (779)
..+.++|+.+++....+.|...-..-+|+ ++.|+.+..+ .|+++|+.+.+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 46999999999998888888877777886 5777776543 799999998873
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.14 Score=60.72 Aligned_cols=104 Identities=10% Similarity=0.156 Sum_probs=76.5
Q ss_pred cccCCCCeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v-~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+-+...|.|.+|.-..+... ....+-.+.+..++.|++..+.|.|+..|. |-||.+....+.. ..|
T Consensus 49 ~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~-----------~~~- 115 (726)
T KOG3621|consen 49 AMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD-----------LDY- 115 (726)
T ss_pred EEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc-----------cee-
Confidence 34556799999998776543 233345567888999999999999998887 8999887642111 112
Q ss_pred eecCCC--cccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t--~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.+++. ...|++++||+|+..|.+|-+.|+|+.-.++.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 223332 44599999999999999999999999988876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=56.74 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC--------------CcccEEEEE
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--------------TNAVIQDIS 334 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~--------------t~a~I~sIa 334 (779)
.-|+++.|+.+|.+||||+.+|+ +-+|.-.... .+.|+++... -.-+|..|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~-------------~~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLY-------------KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeeccccc-------------ccceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 46899999999999999999998 6787543320 0112221111 012378899
Q ss_pred EcCCCC--EEEEEeCCCeEEEEecCCCCC
Q 004015 335 FSDDSN--WIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 335 FSpDg~--~LAtgS~DGTVhIwdl~~~gg 361 (779)
|-+++. .+..++.|.|+++|.+...+.
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~ 120 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGS 120 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeecccc
Confidence 988776 477889999999999976543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.18 Score=54.54 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=71.3
Q ss_pred ccccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 241 FPDADNVGMVIVRDIV-SKNVIAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~-s~~~v~~-f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++..||.+.-||++ .++.+.+ -+-|+..|.+|.=|| .+.+++||+-|-+ |++||.+.- .+.
T Consensus 181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm-------------~kP 246 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM-------------GKP 246 (339)
T ss_pred EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc-------------cCc
Confidence 3567889999999999 4555555 678999999999887 6999999999977 999998842 112
Q ss_pred EEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg 361 (779)
++.- ....-|+.|.++|--. .|..+.+..-.+|-+++..-.
T Consensus 247 l~~~---~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 247 LFKA---KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cccC---ccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 2211 1113388888888433 334444555566666655433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.1 Score=61.63 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=74.7
Q ss_pred ccccCCCCeEEEEECCCC---------------cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 241 FPDADNVGMVIVRDIVSK---------------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~---------------~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
++.+..+|.++|..+.+. ..-+++.+|...|.-+.|+.+-+.|-|.+.+|- |.||=+..+ .|.
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmlykg-sW~ 106 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLYKG-SWC 106 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeeecc-cHH
Confidence 455667888888766542 123567899999999999999999999999995 899988765 221
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..+.+ .| ....|.+++|..||+.|++.-.||.|.|=.+
T Consensus 107 ----------EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 107 ----------EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ----------HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 11111 12 1345899999999999999999998866443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.45 Score=56.77 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.-+-.|..||+++. .++..+..-...-+.++|+- ++..||+ ..|+.|+|||.+.+ + ..+..+.
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~g---s----------~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKG---S----------TPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCC---C----------cceEEec
Confidence 45668999999985 46666665556677899988 6777765 45778999999876 1 2344554
Q ss_pred cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+ +.+.|..++|.. .-..+.+.+.||||+.|+......
T Consensus 199 ~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 199 G--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred c--cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 4 235688999854 334578999999999999977543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.21 Score=58.67 Aligned_cols=59 Identities=17% Similarity=0.375 Sum_probs=51.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++....+|.|.++-+. .+.+.+|.-|..+++ +++|.|||++||.|=.||+ |+|-|+..+
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~ 94 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKG 94 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCC
Confidence 4455678889998888 777889988888888 9999999999999999998 899999875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.45 E-value=8.4 Score=44.97 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=42.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-------E--EEEEE-c-CcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-------I--YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-------V--~sV~~-s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+.+.... + ..+.. . +++++.+.++.|+++|+.|++.+.+...
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 6688889999999988876432 1 12233 3 5556667889999999999999988864
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.1 Score=58.41 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=75.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS--~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+.||.+-+|.+. .++....++|....+...|=- .+|||++ .|+..+.+||..-. +.. .+.| +.
T Consensus 2269 ~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-~~~--------s~v~--~~ 2334 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-PMN--------SLVH--TC 2334 (2439)
T ss_pred eccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC-ccc--------ceee--ee
Confidence 3568899999887 667788899999999999876 6677764 46667999996542 111 2233 33
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+- ..+++++|.|.-+.|.+|+.+|.|.|||+....
T Consensus 2335 H~----~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2335 HD----GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cC----CCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 22 237899999999999999999999999997653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.17 Score=57.96 Aligned_cols=93 Identities=15% Similarity=0.259 Sum_probs=66.9
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEE
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 332 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~s 332 (779)
|...+...-..|.+-.-++..++|||.|++|++....| |.+|.-... -.+.++. ...|..
T Consensus 17 ~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~--------------~~l~~~~----~~~V~~ 76 (561)
T COG5354 17 WNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSK--------------AKLVRFR----HPDVKY 76 (561)
T ss_pred ecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccch--------------hheeeee----cCCcee
Confidence 55555555455556667999999999999999987765 899985543 1233332 245999
Q ss_pred EEEcCCCCEEEEEeCCCe---------------EEEEecCCCCCceee
Q 004015 333 ISFSDDSNWIMISSSRGT---------------SHLFAINPLGGSVNF 365 (779)
Q Consensus 333 IaFSpDg~~LAtgS~DGT---------------VhIwdl~~~gg~~~~ 365 (779)
+.|||.++||.+-+..+. +.|||+..+.-..++
T Consensus 77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf 124 (561)
T COG5354 77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF 124 (561)
T ss_pred cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence 999999999999887665 889999775433343
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.36 Score=56.41 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=48.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
.++-++.||.|++||...+. .++..+.-..+.++|+|+|.+++.|+..|. +.+||+.-.
T Consensus 273 kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred eEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 45678899999999998763 333344456788999999999999999997 899998765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.6 Score=45.60 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCCCCE-----EEEEeCCCCCCCCCCccCCCCceeE
Q 004015 248 GMVIVRDIVSKNVIAQFRA-----HKSPISALCFDPSGILLVTASVQGHN-----INIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~a-----Ht~~IsaLaFSPdG~lLATaS~DGt~-----I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.+.++|+.+++....+.. .....+.++++|+|.+.+|-+..... =.||.+.+. + ....
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~---------~~~~ 128 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--G---------KVTV 128 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--S---------EEEE
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--C---------eEEE
Confidence 3456669888754333332 33567889999999999987754210 135554432 0 1122
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~gg 361 (779)
+. .+. .....|+|+||++.|. +-+..+.|..|++...+.
T Consensus 129 ~~---~~~--~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 129 VA---DGL--GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EE---EEE--SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred Ee---cCc--ccccceEECCcchheeecccccceeEEEecccccc
Confidence 21 221 1257899999999775 567788999999976554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.22 Score=54.13 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=69.9
Q ss_pred cccccCCCCeEEEEECCCCc----------------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKN----------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL 303 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~----------------~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~ 303 (779)
.|.-....|.|++-|++... -+.-|..-..+|+.++|+++|+|+++-+-- .++|||+... .
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~-k 312 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMA-K 312 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccc-c
Confidence 44455678999999998421 112233445789999999999999986654 4999998764 1
Q ss_pred CCCCccCCCCceeEEEEe--ec--------CCCcccE---EEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 304 GTSSACDAGTSYVHLYRL--QR--------GLTNAVI---QDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l--~r--------G~t~a~I---~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.+. +- -..+.-| ..|.||-|.+.+.+||.....-||...+
T Consensus 313 ------------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 313 ------------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ------------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 111111 00 0000112 3689999999999999999988888544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.8 Score=48.54 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=47.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
++++++.|+.|+|-.+..--.+..|. +|+.-|+.|+.-++ .+|++||.|+| +++||+..+
T Consensus 165 ~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sg 225 (390)
T KOG3914|consen 165 FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSG 225 (390)
T ss_pred EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccC
Confidence 34566778888887666655666666 89999999998765 45999999998 899999986
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=53.58 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=74.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP---dG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.++-.|.|.|||+.....+..|..|.++|..|+|=+ +. .+|+.-..-. .+-+|+..+| ..
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss-~lvLwntdtG--------------~k 147 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS-TLVLWNTDTG--------------EK 147 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc-EEEEEEccCC--------------ce
Confidence 4556679999999999999999999999999999865 34 3444333333 4899998876 45
Q ss_pred EEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q 004015 318 LYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
+++...++ -...|+.|.| |.+.|..-+..|.+.+-+.-.
T Consensus 148 ~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 148 FWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred eeccccCC--cceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 56554432 1255689998 889999999999988877643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.22 Score=56.84 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred cccccCCCCeEEEEECCCC------cEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK------NVIAQFRAHK------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt------~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s 307 (779)
.|+.+..+--++|||.+.- .++.+|..|. --|+|++|+.+|.-|.++-.|-. |.+|.-.-+ .|+..
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~-~G~~p 373 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMG-DGSEP 373 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccccc-cCCCC
Confidence 3455667778899998752 2455555442 36999999987664444444433 788843221 22111
Q ss_pred c-cCCC-CceeEEEEeecCCCccc-EEEEEE-cCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 308 A-CDAG-TSYVHLYRLQRGLTNAV-IQDISF-SDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 308 ~-~~~~-~s~~~l~~l~rG~t~a~-I~sIaF-SpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
- ..+. ..+..+|+-+| +.. |..+-| -|.+.|+++||+=|.|.||+-+...
T Consensus 374 ~~~s~~~~~~k~vYKGHr---N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHR---NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCCcchhhccchhhcccc---cccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 0 0001 12233355444 333 888876 8999999999999999999987753
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.4 Score=52.75 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=66.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCCE-----------EEEEeCCCC----CCC-
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---VQGHN-----------INIFKIIPG----ILG- 304 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS---~DGt~-----------I~Vwdi~~~----~~g- 304 (779)
....+.+.+.|..+.+++.++.--. .-..+.|+|||+++.+.+ +.|.. +.+|++... ..|
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 3456889999999988888876433 335689999999998775 33222 223332210 000
Q ss_pred ------C-CCccCCCC----ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCC
Q 004015 305 ------T-SSACDAGT----SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLG 360 (779)
Q Consensus 305 ------~-~s~~~~~~----s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~g 360 (779)
. .+.-+... ....++.+.-|. ....|++||||+|+.+++. +.+|.|.|+....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0 00000000 011223332232 2468999999999877765 8999999998854
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.13 E-value=15 Score=42.08 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEeCCeEEEEeCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAA 110 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~d~~I~IwD~~ 110 (779)
|..|+||+. +|+.+.++.++ +.|..+.|+ .++|+|..++.+++||+.
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 347999998 68889999884 789999995 678888999999999987
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.65 Score=52.81 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=77.2
Q ss_pred CCCCeEEEEECCCCc-EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKN-VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~-~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
-.+|.|.|+|-.... .+..| +-|..||.++.+++.|...++.+..|- |.-|.......-+.-.- .....+--.|
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l--~~~~K~eTdL- 194 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNL--NFELKHETDL- 194 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCccccc--cccccccchh-
Confidence 356889999977654 33344 479999999999999999999998885 89998763100000000 0011110011
Q ss_pred cCCCcc--cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 323 RGLTNA--VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 323 rG~t~a--~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.+...+ ...++.|||+|..+++-+.|.+|++|....+.-.
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 122222 2689999999999999999999999999875433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=4.3 Score=46.71 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
-|.+.|.+.-.+-.++ .+|.+.|....|.-+++-++.|..||..+-|||...+ ...++..+.
T Consensus 340 RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------------e~kr~e~~l- 401 (668)
T COG4946 340 RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------------EVKRIEKDL- 401 (668)
T ss_pred cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---------------eEEEeeCCc-
Confidence 3555555544443332 2677889999999999999999999988999998875 222333332
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..|..+..||||++++++..+..+-+.|+..+.
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 348999999999999999999999999998753
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.57 Score=37.38 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..|.+++|+|...+||.++.+|. |.||++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 57999999999999999999998 899988
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.61 E-value=4.3 Score=50.12 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred CcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 239 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 239 g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
|+++.++.+|.||+||-...+....|++-..||..|..+.||++|+..+. +.+.|++..
T Consensus 589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 35666788999999996655555667788899999999999997654443 347777754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.34 E-value=12 Score=43.52 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 280 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 280 G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|.+|+..+.+ .|.+||..++ ..+.++. -..|..|.||+|++++|..+.+ ++.|++.+.
T Consensus 117 G~LL~~~~~~--~i~~yDw~~~--------------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWETG--------------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETT--EEEEE-TTT----------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCC--CEEEEEhhHc--------------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 9988888766 4899999875 3344432 2238899999999999999866 677776644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.18 E-value=2.2 Score=51.60 Aligned_cols=106 Identities=20% Similarity=0.358 Sum_probs=71.2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC-----CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-----GILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd-----G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.+++.+.||+|.|-.+.+.+...++.= .-||.+++|+|| .+.+++|+..| +-++.-.- .|.- .+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~w--lgnk------~~ 153 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNW--LGNK------DS 153 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce--EEEehhhh--hcCc------cc
Confidence 456677899999998888766554432 358999999999 67888988887 45554221 1110 01
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+ .++-+ ...|.+|+|. |.++|=++++| |+|||+........+
T Consensus 154 v----~l~~~--eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 154 V----VLSEG--EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred e----eeecC--ccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 1 22222 2359999997 77888888777 799999876554444
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.35 Score=51.67 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=62.5
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
+..++|+++-.+.+. ..++- ..|++++-.|.- .++++|+.||- +-|||.+.. ... ..++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~---~~p--------~S~l~a---- 221 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNV---AMP--------VSLLKA---- 221 (319)
T ss_pred cceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCe-EEEEEcccc---cch--------HHHHHH----
Confidence 345566665433221 11222 349999999964 46677777775 999998864 100 112221
Q ss_pred CcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCC
Q 004015 326 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 326 t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.+.|+.|-|.| ++..|.+++.||.+--||-+.
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 235699999999 788999999999999999875
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.33 Score=55.45 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=65.6
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC--
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-- 337 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-- 337 (779)
....|..|.+-|+.|.|+..|+.|+|+|+|.+ |.+||-... .....+.-|+... |...-|-|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~~~--------------~~~l~f~SGH~~N-vfQaKFiP~s 197 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWVSG--------------SPKLSFESGHCNN-VFQAKFIPFS 197 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccce-EEeehhhcc--------------Ccccccccccccc-hhhhhccCCC
Confidence 44567899999999999999999999999976 899997654 2234555666544 33333654
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCce
Q 004015 338 DSNWIMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
+.+-+++++.||-+++=.+-..+...
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e 223 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVE 223 (559)
T ss_pred CCcCceeccccCceeeeeecccccee
Confidence 45678899999999998886655443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.72 Score=57.20 Aligned_cols=58 Identities=19% Similarity=0.441 Sum_probs=41.6
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 243 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-+..-|.|...|.... .+...=..-.++|++++|+.||++|+.|=.+|+ |.+||+...
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~ 162 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRA 162 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCC
Confidence 3445567777776653 111111122479999999999999999999998 899999874
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.82 Score=50.89 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=48.1
Q ss_pred CCCCcCCCEEEEEECCCCcEEEEEeCCCCEEEEEEc----CcEEEEEe-CCeEEEEeCCCCcEEEEEec
Q 004015 57 GNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQ-AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 57 ~~~~~~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s----~rlLaVs~-d~~I~IwD~~T~e~l~tl~t 120 (779)
++.+...+.|=+||++|++.|..+....++.+|..+ ..++++.. ++.+++||+.|++.+.++..
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 344445578999999999999999998899899996 34556654 67899999999999999864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.23 Score=60.12 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=82.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC-EEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+++-+...|.|++|++.+|....+..+|.++|+-|.=+.||.+++|.|.-.. ..-+|++... .+ -+|.
T Consensus 1115 hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~----------~~Hs 1183 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-GG----------PRHS 1183 (1516)
T ss_pred eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-cC----------cccc
Confidence 5667788999999999999999999999999999999999998888776543 4568887542 11 1332
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
| ++ =.++-||...++-+.|+....++|||+.+.....+
T Consensus 1184 f---~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1184 F---DE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred c---cc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 2 22 23688998888888999889999999988655444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.1 Score=49.27 Aligned_cols=95 Identities=26% Similarity=0.394 Sum_probs=60.3
Q ss_pred CeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..+.++|+.+++ .+..+.++.. .-+|+|||+.||-++ .||. ..|| |+... . +.+|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~-~~iy~~dl~~~------------~---~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGS-PDIYLMDLDGK------------N---LPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCC-ccEEEEcCCCC------------c---ceecc
Confidence 468899998764 4555666554 478999999877554 4554 4555 54432 1 22232
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCCce
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSV 363 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg~~ 363 (779)
.+... -..=.|||||++|+-.|++ |.-.||-+...++.+
T Consensus 279 ~~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 32211 1256799999999877765 566777777766654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.2 Score=35.00 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCCEEEEEeCCC
Q 004015 269 SPISALCFDPS-G--ILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 269 ~~IsaLaFSPd-G--~lLATaS~DGt~I~Vwdi~~ 300 (779)
++|.+++|||+ + .+||.+-..|. |+|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 47899999985 4 59998888887 89999984
|
It contains a characteristic DLL sequence motif. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.5 Score=48.81 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.+.|||+.+++....... ...+....|||+|+.||-... +.|.++++..+.... -..+... . ++ .|..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~-lT~dg~~--~-i~---nG~~ 91 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQ-LTTDGEP--G-IY---NGVP 91 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEE-SES--TT--T-EE---ESB-
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEE-eccccce--e-EE---cCcc
Confidence 36799999999765443333 678899999999999998874 358888776541000 0000000 0 00 0110
Q ss_pred --------cccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCC
Q 004015 327 --------NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 327 --------~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~ 359 (779)
-..-..+-|||||++||....| ..|+.+.+-.+
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 0011358899999999987654 45666666444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=87.06 E-value=6.2 Score=37.30 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=44.2
Q ss_pred eEEEEE---cCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe
Q 004015 271 ISALCF---DPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 271 IsaLaF---SPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS 346 (779)
|++|++ +-||. -|+.||.|.. |+||+-.. .++.+.. ...|++++=... ..|+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e----------------~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE----------------IVAEITE---TDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc----------------EEEEEec---ccceEEEEEcCC-CEEEEEe
Confidence 455555 44544 7888999965 99998542 3444432 245888887776 5688999
Q ss_pred CCCeEEEEec
Q 004015 347 SRGTSHLFAI 356 (779)
Q Consensus 347 ~DGTVhIwdl 356 (779)
..|||-||+-
T Consensus 61 ~NGTVGvY~~ 70 (111)
T PF14783_consen 61 ANGTVGVYDR 70 (111)
T ss_pred cCCEEEEEeC
Confidence 9999877654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=86.40 E-value=60 Score=37.94 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=38.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-E------------E---------EEEE--cCcEEEEEe-C-----------------
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-I------------Y---------SVRC--SSRVVAICQ-A----------------- 101 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-V------------~---------sV~~--s~rlLaVs~-d----------------- 101 (779)
+.|.-+|+.||+.+...++..+ . + ...+ .+.+|.++. +
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCc
Confidence 5688889999999998877311 0 1 1122 234555543 2
Q ss_pred -CeEEEEeCCCCcEEEEEec
Q 004015 102 -AQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 102 -~~I~IwD~~T~e~l~tl~t 120 (779)
+.|+.+|+.|++.+.+...
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeC
Confidence 2799999999999988754
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.8 Score=47.36 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=53.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc----cCC-CCceeEEEEeecCCCcccEEEEEEcCCCC--E
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA----CDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSN--W 341 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~----~~~-~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~ 341 (779)
.-|+++.|+..|.|||||+..|+ +-+|.-... .++..- ++. +.....|..+. ..-+|..|.|-.++. .
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s-~~ceykf~teFQshe~EFDYLkSle---ieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLE---IEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeecccc-cccchhhhhhhcccccchhhhhhcc---HHHHhhheeeecCCCcce
Confidence 46899999999999999999888 778864332 111110 000 00000011111 112377888877655 4
Q ss_pred EEEEeCCCeEEEEecCCC
Q 004015 342 IMISSSRGTSHLFAINPL 359 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~ 359 (779)
+..++.|.||++|.+-..
T Consensus 102 FLlstNdktiKlWKiyek 119 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred EEEecCCceeeeeeeecc
Confidence 778889999999999543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.14 E-value=3.4 Score=50.49 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=73.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEEcCCCCEEEEEeCCCC----EEEEEeCCCCCCCCCCccCCCCce
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~-IsaLaFSPdG~lLATaS~DGt----~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++-+..+|.|.+++- +.+.+..|++|... |.-|....+-.+|++-..|+. .++||++.... ++.+ + .+
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-~n~s---P--~c 110 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-KNNS---P--QC 110 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-CCCC---c--ce
Confidence 445667787766653 23455889999888 555655555579999988887 79999998642 2211 0 11
Q ss_pred e---EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 316 V---HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 316 ~---~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. .++.+.-+..+.++.+++.|-|=+.+|+|-.+|+|..+.
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 1 223323333345588999999999999999999999874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.14 E-value=1.1 Score=54.26 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f--~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
...|.|.|| ..++++.... +-| +++|||.|.--+||.+=..|- +.||...+. ...++.
T Consensus 38 er~GSVtIf-adtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~---------------e~htv~ 97 (1416)
T KOG3617|consen 38 ERGGSVTIF-ADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT---------------ETHTVV 97 (1416)
T ss_pred CCCceEEEE-ecCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCc---------------eeeeec
Confidence 345778777 3445543322 122 445999999999999988886 899986542 122322
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
- .+++.|+-+.|||||..+.++..-|.+|+|++...|.
T Consensus 98 ~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 98 E-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred c-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 2 2356799999999999999999999999999976543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.1 Score=55.53 Aligned_cols=79 Identities=10% Similarity=0.186 Sum_probs=55.5
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-CcccEEEEEEcCCCCEEEEEeCCCeE
Q 004015 273 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTS 351 (779)
Q Consensus 273 aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-t~a~I~sIaFSpDg~~LAtgS~DGTV 351 (779)
.++----+..+|.++..|+ +-.+|.... +.-++++. ....|.++||+.||++++.|-.+|-|
T Consensus 92 v~s~a~~~~~ivi~Ts~gh-vl~~d~~~n----------------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V 154 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGH-VLLSDMTGN----------------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHV 154 (1206)
T ss_pred eeeeeeeeeeEEEEcCchh-hhhhhhhcc----------------cchhhcCCccCCcceeeEecCCCceeccccCCCcE
Confidence 3443345678899998888 677776542 11122322 23459999999999999999999999
Q ss_pred EEEecCCCCCceeeccC
Q 004015 352 HLFAINPLGGSVNFQPT 368 (779)
Q Consensus 352 hIwdl~~~gg~~~~~~H 368 (779)
.+||++.......+..|
T Consensus 155 ~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 155 TVWDMHRAKILKVITEH 171 (1206)
T ss_pred EEEEccCCcceeeeeec
Confidence 99999886555444433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=85.59 E-value=66 Score=38.23 Aligned_cols=53 Identities=15% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 301 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~ 301 (779)
-|.+.=+|+.+++.+..++......... +.-.|.++..++.+|. ++.||..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~-l~a~D~~TG 492 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGY-FKAFDAKTG 492 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCe-EEEEECCCC
Confidence 4788889999999988876432212221 1125567777888987 899999987
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=5.7 Score=47.75 Aligned_cols=83 Identities=7% Similarity=0.061 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC----CcccEEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----TNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~----t~a~I~sIaFSpDg~~LAtg 345 (779)
..++-.|+|||+.|++.+.....+++.+-... +. ..+..+.-|. ....|.++.|||||++||..
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~-----------gq-l~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT-----------GQ-LARTPVDASAVASRVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCC-----------ce-EEEEeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence 37888999999999998754343444332111 00 1111221111 12249999999999999987
Q ss_pred eCCCeEEEEecCC-CCCceee
Q 004015 346 SSRGTSHLFAINP-LGGSVNF 365 (779)
Q Consensus 346 S~DGTVhIwdl~~-~gg~~~~ 365 (779)
. +|.|+|=-+.. .+|...+
T Consensus 466 ~-~g~v~Va~Vvr~~~G~~~l 485 (591)
T PRK13616 466 I-GGKVYLAVVEQTEDGQYAL 485 (591)
T ss_pred E-CCEEEEEEEEeCCCCceee
Confidence 6 57777744433 3444343
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=5 Score=48.22 Aligned_cols=96 Identities=16% Similarity=0.335 Sum_probs=67.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+.+.+|.|.||=+-.+.-...+. ..++-|.+|+|+-||+.++.+-.||. |.|=.+.-. .++
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvdGN---------------RIw 150 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVDGN---------------RIW 150 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeeccc---------------eec
Confidence 345678999999988775443333 23456889999999999998888887 444433221 111
Q ss_pred --EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 320 --RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 320 --~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.| .|.. ...+.||+|.+.+..+-..|.+|+||-.
T Consensus 151 gKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 151 GKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred chhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 11 1211 3467899999999999999999999974
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.15 E-value=28 Score=37.77 Aligned_cols=57 Identities=9% Similarity=0.111 Sum_probs=43.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEE---EEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIY---SVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~---sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~ 119 (779)
.+.+.|.+.+||+.+..+.--..|. -+.+++.++-. +.|++.|+.|..+..++++.+
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 4678999999998888776544432 23446666665 788999999999999999864
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.69 E-value=18 Score=44.57 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCcc-CCCCceeE-EEEe----ecCCCcccEEEEEEcCC---C
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVH-LYRL----QRGLTNAVIQDISFSDD---S 339 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~-~~~~s~~~-l~~l----~rG~t~a~I~sIaFSpD---g 339 (779)
-.|..|.+||+|++||-++..| |-|-.+... .|..+.. +......+ .+.+ .+......|..+.|.|. +
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r-~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRR-WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccc-cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4688899999999999999886 556666421 1111100 00011111 1111 12223345999999997 4
Q ss_pred CEEEEEeCCCeEEEEecCCCCCcee
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..|++=++|+++++||+.....+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeE
Confidence 8999999999999999986555443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.67 E-value=71 Score=35.50 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEe
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAIL 119 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~ 119 (779)
...+.|||+.+++..........+....++ ++.||...++.|+++++.+. ....|+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~-~~~~lT 79 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG-QETQLT 79 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS-EEEESE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCC-CeEEec
Confidence 367899999998754433335678888886 78999999999999999888 334443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.55 E-value=5.5 Score=45.65 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=64.2
Q ss_pred EECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-----CCCC--ccCCCCceeE-EEEeecC
Q 004015 253 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSS--ACDAGTSYVH-LYRLQRG 324 (779)
Q Consensus 253 wDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-----g~~s--~~~~~~s~~~-l~~l~rG 324 (779)
|.++...-+..|.--.+..+++.|+|+|..+++-+.|-+ |++|++.++-. ...+ ...+...... -..|.|.
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR 264 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR 264 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhhhhhhccchhhhhccccccccceeehhhh
Confidence 334444445555555677899999999999999988855 99999887611 1100 0000000000 0011111
Q ss_pred ---------CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 325 ---------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ---------~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+...+-..++|...|+||..++.=| |+|+++.+..
T Consensus 265 maverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 265 MAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 1112245789999999999998776 7888887753
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=84.26 E-value=6.8 Score=45.04 Aligned_cols=91 Identities=16% Similarity=0.329 Sum_probs=59.6
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEE-EcCC
Q 004015 260 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS-FSDD 338 (779)
Q Consensus 260 ~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIa-FSpD 338 (779)
+...|....-.+.+|+.+|+|++.|+.+.-|+ |.|+|+..+ .+.++++ |...|.+.-+- +...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~------------~vvrmWK---GYRdAqc~wi~~~~~~ 362 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARG------------IVVRMWK---GYRDAQCGWIEVPEEG 362 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCC------------hhhhhhc---cCccceEEEEEeeccc
Confidence 34456666667899999999999999988898 899999876 2233333 33333321111 1111
Q ss_pred ----------------CCE-EEEEeCCCeEEEEecCCCCCceeec
Q 004015 339 ----------------SNW-IMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 339 ----------------g~~-LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+ ++-+-.+|.+.||.+..+.....++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 363 DRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 123 4456679999999998876666654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.11 E-value=2.7 Score=50.56 Aligned_cols=107 Identities=11% Similarity=0.205 Sum_probs=73.7
Q ss_pred eEEEEECCC---CcEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 249 MVIVRDIVS---KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 249 ~V~VwDl~s---~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.-.||.+.. ..+-.-+-+|+..|+.+.|+|.- ..|||++.|-. ++.||++.. ...+|.+.--
T Consensus 92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp-------------~~p~ys~~~w 157 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSP-------------HRPFYSTSSW 157 (1081)
T ss_pred hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCC-------------Ccceeeeecc
Confidence 345677763 23334456999999999999975 48999999954 999999763 1233433211
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCce-eeccCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDAN 371 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~-~~~~H~~~ 371 (779)
.+. -..+.|+.-.-.+.+.+..+-|.|||+..++-+. ++++|...
T Consensus 158 ~s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~ 203 (1081)
T KOG0309|consen 158 RSA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS 203 (1081)
T ss_pred ccc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee
Confidence 111 2468898866667777788889999998776554 45777654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.92 E-value=41 Score=37.81 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=40.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeC-CCCEEEEEeCCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASV-QGHNINIFKIIPG 301 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~-DGt~I~Vwdi~~~ 301 (779)
.|-+||+.+++.++.+.. ..+|.+|+.+.|.+ +|.+.+. +|. +.|||..++
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCC
Confidence 788899999999998873 23688999999988 6655554 555 899999886
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=83.79 E-value=7.6 Score=44.39 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=55.6
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee--c----CCCcccEEE
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--R----GLTNAVIQD 332 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--r----G~t~a~I~s 332 (779)
.++.-+....++|++|+.|.=| ++|.|..+|+ +-|.|++-. ..+|+-. . ......|++
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGP--------------avI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGP--------------AVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTT--------------EEEEEEEGGG--T-SS----EEE
T ss_pred CchhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCC--------------eEEeeccccccccccccccCeeE
Confidence 3555566668999999998666 8999999997 899999643 2333321 1 112234888
Q ss_pred EEEcC-----CC---CEEEEEeCCCeEEEEecCC
Q 004015 333 ISFSD-----DS---NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 333 IaFSp-----Dg---~~LAtgS~DGTVhIwdl~~ 358 (779)
|.|+- |+ -.+.+|+..|++.+|.|-+
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 88873 33 4688999999999999975
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.29 E-value=10 Score=42.75 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE
Q 004015 270 PISALCFDPSGILLVTA-SVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATa-S~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
.+...++||||++||-+ +..|. .++|+|+.++ ..+-. +........++|++|++.|...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------------~~l~d---~i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------------KFLPD---GIENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------------EEEEE---EEEEEESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------------cCcCC---cccccccceEEEeCCCCEEEEE
Confidence 45578999999998855 44443 5899999876 22211 1111122349999999988777
Q ss_pred eCCC-----------eEEEEecCCCCC
Q 004015 346 SSRG-----------TSHLFAINPLGG 361 (779)
Q Consensus 346 S~DG-----------TVhIwdl~~~gg 361 (779)
..+. .|+.|++.+...
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~ 214 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS 214 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred EeCcccccccCCCCcEEEEEECCCChH
Confidence 6544 266666655433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.49 E-value=51 Score=42.31 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..|+|||-. +..-.+=..-.+-=.+|+|=|+|.++|+--. |++ |.+|.-. | --+--+.+.+-
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffErN-G------------L~hg~f~l~~p 286 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFERN-G------------LRHGEFVLPFP 286 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEecC-C------------ccccccccCCc
Confidence 689999987 3221111112223346999999999998643 333 7777632 2 01112333332
Q ss_pred CCcccEEEEEEcCCCCEEEEE---eCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMIS---SSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtg---S~DGTVhIwdl~~~ 359 (779)
....+|..++|+.++..||+- .....|.+|-+..|
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 222238899999999999983 33445999988775
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=81.33 E-value=18 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 268 t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
...|.++.|-++...|+.+..+|. |-++...+. .. ......+-.+ ...|.+++||||...||..+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gd-i~~~~~~~~-~~-------~~~~E~VG~v-----d~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGD-IILVREDPD-PD-------EDEIEIVGSV-----DSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCce-EEEEEccCC-CC-------CceeEEEEEE-----cCcEEEEEECCCcCEEEEEeC
Confidence 468999999999998888888997 455522111 00 0122333333 334999999999999999999
Q ss_pred CCeEEEEe
Q 004015 348 RGTSHLFA 355 (779)
Q Consensus 348 DGTVhIwd 355 (779)
++++.+-.
T Consensus 141 ~~~l~~mt 148 (928)
T PF04762_consen 141 EGNLLLMT 148 (928)
T ss_pred CCEEEEEe
Confidence 99998864
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.97 E-value=40 Score=37.32 Aligned_cols=102 Identities=21% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~-~~l~~l~rG~ 325 (779)
.+.|.-||..+++. ..|......-..+.++..|.++++ .+| +.+++...+ .. ..+.....+.
T Consensus 46 ~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~--~~g--~~~~~~~~~------------~~~t~~~~~~~~~ 108 (307)
T COG3386 46 GGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIAC--EHG--VRLLDPDTG------------GKITLLAEPEDGL 108 (307)
T ss_pred CCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEE--ccc--cEEEeccCC------------ceeEEeccccCCC
Confidence 35677777765532 333333333344666777755544 333 567777543 12 2334444454
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCCCceee
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---------DGTVhIwdl~~~gg~~~~ 365 (779)
......++...|||++.++.-. ..+-.||.+.+.+....+
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 4455779999999998776555 223467777765444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 3e-21
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 237 VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296
+ V+ +AH +PI + + ++ T S G I +F
Sbjct: 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223
Query: 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356
K G V + +RGL A + D+ +S D + + + S + T H+F I
Sbjct: 224 KTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269
Query: 357 NP 358
Sbjct: 270 FN 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 9e-12
Identities = 121/754 (16%), Positives = 223/754 (29%), Gaps = 255/754 (33%)
Query: 4 LPRPITSKR-------SRDKFAEVRPLL-VFCADGSRSCGTKVQDGLATACNGTSANYHD 55
+P+ I SK S+D + L + V++ L NY
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-------NYKF 93
Query: 56 LGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVA---ICQAAQVHCFDAATL 112
L S + T S+ ++ Y+ + R +Y+ ++V A + + A L
Sbjct: 94 LM--SPIKTEQRQPSMMTRMYI---EQRDRLYN---DNQVFAKYNVSRLQPYLKLRQALL 145
Query: 113 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRS 172
E+ A + I G L G W+A + V +V Q M
Sbjct: 146 ELR-------------PAKNVLI-DGVLGSGKTWVA-----LDVCLSYKV--QCKM---D 181
Query: 173 FSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF-----LPDSQNSLQSA 227
F F N + + + + L L Y+ + S + +S+Q+
Sbjct: 182 FKIFWLN---LKNCNSPETV-----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 228 IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287
+ + + + ++++ ++ + F C ILL T
Sbjct: 234 L----RRLLKSKPYENC----LLVLLNVQNAKAWNAFNLS-------C----KILLTTR- 273
Query: 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 347
+ + A T+++ L LT ++ + ++
Sbjct: 274 ----FKQVTDFLSA---------ATTTHISLDHHSMTLTPDEVKSL-LL---KYLDCRPQ 316
Query: 348 RGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPV 407
+P + + + P
Sbjct: 317 ---------------------------------------------DLPRE--VL-TTNPR 328
Query: 408 TLSVVS-RIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGN--SETYAAGSSL 464
LS+++ IR+G W L+ I SS + + + +
Sbjct: 329 RLSIIAESIRDGLATWDNW-------KHVNCDKLTTIIESSLNVLEPAEYRKMFDR---- 377
Query: 465 KIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNIC 524
L VF PS + + L + V + D +VV + K+++
Sbjct: 378 -----LSVFPPS-------------AHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 525 QKQA--------------RREREDN-------IDIYGDNGTLDSNKIYPEEVKDGNFAST 563
+KQ + + E+ +D Y T DS+ + P + D F S
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSH 476
Query: 564 EANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLK 623
HHL E HP R+ L+ ++ DF FL+
Sbjct: 477 IG--------------HHLKNIE-----HPERMTLF--RMVFL------DF-----RFLE 504
Query: 624 GEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNER----LLHQRSGLS 679
+I R + A + + LQ KF + + ER +L +
Sbjct: 505 QKI---RHDSTAWNASG----SILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIE 556
Query: 680 ENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEET 713
EN + S+ D + + AL AE EE
Sbjct: 557 ENLICSK-----YTDLLRI--ALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 50/329 (15%), Positives = 96/329 (29%), Gaps = 90/329 (27%)
Query: 451 CKGNSETYAA--GSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPE 508
E L+ N+ + SP I+ R + M + Y+
Sbjct: 72 LSKQEEMVQKFVEEVLR-INYKFLMSP----IKTEQR-QPSMMTRMYIEQRDRLYNDNQV 125
Query: 509 DDPRLV--VEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEAN 566
V ++ K + R + N+ I G G S K + A
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAK--NVLIDGVLG---SGK------------TWVAL 168
Query: 567 GVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEI 626
V KV +I W + N + +
Sbjct: 169 DVCLSYKV--------------QCKMDFKI-FWL--------------NLKNCNSPETVL 199
Query: 627 EI-ERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLS 685
E+ ++ ++ + D+ + K + + RLL + EN LL
Sbjct: 200 EMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPY--ENCLL- 248
Query: 686 RRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGF-VNNSVSPKTKTRHEIVN 744
L +V +L C ++ + T+ V + +S T T + +
Sbjct: 249 ------VLLNV-------QNAKA-WNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 745 NSESLRVEAQ-----LKFVNSKIEGLRME 768
+S +L + LK+++ + + L E
Sbjct: 294 HSMTL-TPDEVKSLLLKYLDCRPQDLPRE 321
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS 307
+ + D+ K H + ++ F P LL + S G + ++ + S
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG-TLRLWDVRSANERKS- 780
Query: 308 ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 350
+ ++ + V + S+S D + I++++
Sbjct: 781 -INVKRFFLSSEDPPEDVEVIV-KCCSWSADGDKIIVAAKNKV 821
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.9 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.89 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.88 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.88 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.88 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.87 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.87 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.87 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.87 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.86 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.86 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.85 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.84 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.84 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.84 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.83 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.83 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.83 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.82 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.82 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.82 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.82 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.82 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.82 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.81 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.81 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.81 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.81 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.81 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.81 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.8 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.8 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.8 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.8 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.79 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.79 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.79 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.79 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.79 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.79 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.78 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.78 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.77 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.77 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.77 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.77 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.77 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.77 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.77 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.76 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.76 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.76 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.76 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.76 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.76 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.75 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.75 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.75 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.75 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.75 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.75 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.75 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.75 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.74 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.74 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.74 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.74 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.74 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.73 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.73 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.72 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.72 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.72 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.72 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.72 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.72 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.72 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.72 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.71 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.71 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.71 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.71 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.71 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.71 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.7 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.7 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.7 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.69 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.69 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.69 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.69 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.69 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.68 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.68 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.68 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.68 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.66 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.66 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.66 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.65 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.65 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.64 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.64 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.64 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.63 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.63 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.63 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.62 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.6 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.6 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.6 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.59 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.59 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.59 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.59 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.55 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.54 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.49 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.49 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.47 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.47 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.45 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.4 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.4 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.38 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.37 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.36 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.36 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.33 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.3 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.28 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.27 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.26 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.24 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.24 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.23 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.23 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.19 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.17 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.14 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.1 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.1 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.09 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.07 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.04 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.01 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.92 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.9 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.89 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.85 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.84 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.72 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.71 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.6 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.57 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.57 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.56 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.46 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.45 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.45 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.36 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.33 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.28 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.21 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.19 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.16 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.14 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.14 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.14 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.06 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.02 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.0 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.98 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.92 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.86 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.84 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.83 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.82 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.73 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.72 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.7 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.69 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.68 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.54 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.51 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.5 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.47 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.46 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.46 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.37 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.35 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.33 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.33 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.3 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.27 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.26 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.17 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.16 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.12 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.1 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.07 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.06 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.06 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.93 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.9 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.71 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.54 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.54 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.53 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.33 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.2 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 96.14 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.08 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.74 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.66 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.39 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.9 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 94.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 94.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.17 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 92.78 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 92.77 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 91.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 90.73 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 90.39 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 90.38 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 90.09 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 89.54 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 89.04 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 87.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 87.75 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 86.79 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 86.07 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 85.91 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 85.19 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 84.67 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 84.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.3 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 84.12 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 83.54 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 82.94 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 81.94 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 81.46 |
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=215.45 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=140.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEeCCeEEEEeCCCC-cEEEEEecCCcccCCCCCCCccccccceee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAV 142 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~d~~I~IwD~~T~-e~l~tl~t~p~~~~~p~s~~~~~~~~piAl 142 (779)
++|+|||+++++++.++.+..+|.+|+++++.++++.+++|++||+.+. +.+.++.+ + . +.+++
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~--~------------~~~~~ 145 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR-F--G------------GVCEF 145 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-E--E------------EEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-C--C------------ceEEE
Confidence 6899999999999999999999999999988899999999999999987 55444432 0 0 01222
Q ss_pred cCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcC
Q 004015 143 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 222 (779)
Q Consensus 143 gpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~ 222 (779)
++.+||++
T Consensus 146 s~~~la~~------------------------------------------------------------------------ 153 (355)
T 3vu4_A 146 SNGLLVYS------------------------------------------------------------------------ 153 (355)
T ss_dssp ETTEEEEE------------------------------------------------------------------------
T ss_pred EccEEEEe------------------------------------------------------------------------
Confidence 22222221
Q ss_pred ccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---------------E-EEEeccCCCCeEEEEEcCCCCEEEEE
Q 004015 223 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---------------V-IAQFRAHKSPISALCFDPSGILLVTA 286 (779)
Q Consensus 223 si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~---------------~-v~~f~aHt~~IsaLaFSPdG~lLATa 286 (779)
++..+|.|+|||+.++. + +..+.+|..+|++|+|+|||++||||
T Consensus 154 --------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 154 --------------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --------------------ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --------------------CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 12456889999998765 2 78899999999999999999999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+.||+.|+|||+.++ ..+..+.+|.+...|.+++||||+++||+++.|++|+||++...
T Consensus 214 s~d~~~v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ETTCSEEEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred eCCCCEEEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999975899999875 45677766644567999999999999999999999999999764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-22 Score=212.97 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=144.6
Q ss_pred CCEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
.++|+|||+.+++.+..++ +...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|...
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~---------- 171 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ---------- 171 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----------
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc----------
Confidence 3789999999998777665 46789999996 566665 67899999999999999999887432
Q ss_pred ccccceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc-ccc
Q 004015 135 IGYGPLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG-YKK 208 (779)
Q Consensus 135 ~~~~piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~-~~~ 208 (779)
...+++.+ ..|+.++. .+.+|+. ...+.+. .+.... ...
T Consensus 172 --V~~~~~~~~~~~~l~s~s~D~~v~iwd~-----------------------------~~~~~~~----~~~~~~~~~~ 216 (344)
T 4gqb_B 172 --VTCVAASPHKDSVFLSCSEDNRILLWDT-----------------------------RCPKPAS----QIGCSAPGYL 216 (344)
T ss_dssp --EEEEEECSSCTTEEEEEETTSCEEEEET-----------------------------TSSSCEE----ECC----CCC
T ss_pred --eEEEEecCCCCCceeeeccccccccccc-----------------------------cccceee----eeecceeecc
Confidence 12344433 23443322 1223321 1100000 000000 000
Q ss_pred cccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe
Q 004015 209 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS 287 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS 287 (779)
+. +-. .++.. ...++.+..+|.|+|||+++++++.+|.+|...|++|+|+|+| ++|||||
T Consensus 217 ~~--~~~-----------~~p~~------~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 217 PT--SLA-----------WHPQQ------SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp EE--EEE-----------ECSSC------TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred ce--eee-----------ecCCC------CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 00 000 00100 0134567789999999999999999999999999999999998 5899999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~ 359 (779)
.||+ |+|||+..+ .++++ .|+. ..|.+++||||++ +|++++.||+|++|++.+.
T Consensus 278 ~D~~-i~vwd~~~~---------------~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 278 EDCS-LAVLDSSLS---------------ELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TTSC-EEEECTTCC---------------EEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCe-EEEEECCCC---------------cEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 9998 899998764 23444 4543 4599999999987 5779999999999999653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=205.19 Aligned_cols=188 Identities=21% Similarity=0.337 Sum_probs=149.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++++.++.. ...+..++|+ +++|++ +.+++|++||+.+.+...++..+... ..
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~------------v~ 168 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF------------IL 168 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC------------EE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce------------EE
Confidence 47899999999999999986 5678899996 566666 57889999999999988888664210 01
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+++. | +|..
T Consensus 169 -------~~~~s-------------p--------------dg~~------------------------------------ 178 (321)
T 3ow8_A 169 -------SIAYS-------------P--------------DGKY------------------------------------ 178 (321)
T ss_dssp -------EEEEC-------------T--------------TSSE------------------------------------
T ss_pred -------EEEEC-------------C--------------CCCE------------------------------------
Confidence 12222 0 1111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|+|||+.+++++..+++|..+|.+|+|+|+|++||+|+.||+ |+|||+
T Consensus 179 ----------------------lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~ 235 (321)
T 3ow8_A 179 ----------------------LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDV 235 (321)
T ss_dssp ----------------------EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEET
T ss_pred ----------------------EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEEC
Confidence 223456789999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
... ..+..+ .++ ...|.+++|+||+++|++++.|++|+|||+........+..|...
T Consensus 236 ~~~--------------~~~~~~-~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~ 292 (321)
T 3ow8_A 236 QHA--------------NLAGTL-SGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292 (321)
T ss_dssp TTC--------------CEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCc--------------ceeEEE-cCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc
Confidence 864 233444 343 345999999999999999999999999999987777777777543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-21 Score=207.21 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=136.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
+++|+|||+++++++.++++...|++|+|+ +++|+++.++.+.+|+..+++.+........ . ..+.
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~--~--------~~v~-- 223 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDK--N--------WSLS-- 223 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCT--T--------EEEE--
T ss_pred CCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCC--C--------CCEE--
Confidence 589999999999999999999999999996 7899998899999999999887665432100 0 0111
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
-++|.. +|..++...
T Consensus 224 -----~v~fsp---------------------------dg~~l~~~s--------------------------------- 238 (365)
T 4h5i_A 224 -----KINFIA---------------------------DDTVLIAAS--------------------------------- 238 (365)
T ss_dssp -----EEEEEE---------------------------TTEEEEEEE---------------------------------
T ss_pred -----EEEEcC---------------------------CCCEEEEEe---------------------------------
Confidence 123321 122111100
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcE----EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~----v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.+......+++||+..... ...+.+|..+|++|+|||||++||+|+.||+ |+||
T Consensus 239 ---------------------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iw 296 (365)
T 4h5i_A 239 ---------------------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALV 296 (365)
T ss_dssp ---------------------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred ---------------------cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEE
Confidence 0001122577888876542 4567899999999999999999999999998 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
|+.++ ..+.++.+|+. ..|++|+|||||++||++|.|+||+||+|..
T Consensus 297 d~~~~--------------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 297 KLKDL--------------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTTT--------------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCC--------------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99875 55666666754 4599999999999999999999999999954
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=197.15 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=154.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc----EEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE----IEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e----~l~tl~t~p~~~~~p~s~~~~ 134 (779)
.++|+|||+.+++.++++.. ...|.+++|+ +++|++ +.++.|++||+.+.+ ....+..|...
T Consensus 76 Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~---------- 145 (340)
T 1got_B 76 DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY---------- 145 (340)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC----------
T ss_pred CCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc----------
Confidence 37899999999999999986 5789999996 566665 788999999998764 44555555321
Q ss_pred ccccceeecC-ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 135 IGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 135 ~~~~piAlgp-RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
...+++.+ ..|+.++. ...+..|-....+.+. ...++.+ .+..
T Consensus 146 --v~~~~~~~~~~l~s~s~---------------------------d~~i~~wd~~~~~~~~---~~~~h~~--~v~~-- 189 (340)
T 1got_B 146 --LSCCRFLDDNQIVTSSG---------------------------DTTCALWDIETGQQTT---TFTGHTG--DVMS-- 189 (340)
T ss_dssp --EEEEEEEETTEEEEEET---------------------------TSCEEEEETTTTEEEE---EECCCSS--CEEE--
T ss_pred --EEEEEECCCCcEEEEEC---------------------------CCcEEEEECCCCcEEE---EEcCCCC--ceEE--
Confidence 11122111 11222211 1112111111111000 0001100 0000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
-.. .+. ...++++..||.|+|||+.++.++..|.+|..+|.+|+|+|+|++||+|+.||+ |
T Consensus 190 ~~~-----------~~~-------~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v 250 (340)
T 1got_B 190 LSL-----------APD-------TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-C 250 (340)
T ss_dssp EEE-----------CTT-------SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred EEE-----------CCC-------CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-E
Confidence 000 111 113567788999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
+|||+... ..+..+........|.+++|+||+++|++|+.||+|+|||+........+.+|...+
T Consensus 251 ~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v 315 (340)
T 1got_B 251 RLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315 (340)
T ss_dssp EEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence 99999865 233333222222359999999999999999999999999998877777788886443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=194.01 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=156.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+++++. ..+|.+++|+ +++|++ +.|++|++||+.+++++.++..|... ...
T Consensus 35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~------------v~~ 102 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY------------IRS 102 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EEE
T ss_pred CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc------------EEE
Confidence 7799999999999999986 6789999995 555554 77899999999999999999887532 233
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++.| ++||.++.+ ..+..|-....+.+.. ...++.. .+. +-..
T Consensus 103 ~~~~~~~~~l~sgs~D---------------------------~~v~lWd~~~~~~~~~--~~~~h~~--~v~--~v~~- 148 (304)
T 2ynn_A 103 IAVHPTKPYVLSGSDD---------------------------LTVKLWNWENNWALEQ--TFEGHEH--FVM--CVAF- 148 (304)
T ss_dssp EEECSSSSEEEEEETT---------------------------SCEEEEEGGGTTEEEE--EECCCCS--CEE--EEEE-
T ss_pred EEEcCCCCEEEEECCC---------------------------CeEEEEECCCCcchhh--hhcccCC--cEE--EEEE-
Confidence 55544 455555322 1121111111100000 0001110 000 0000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSP--dG~lLATaS~DGt~I~ 294 (779)
++.. ...++++..||.|+|||+.+......+. .|...|.+++|+| ++.+||+|+.||+ |+
T Consensus 149 ----------~p~~------~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~ 211 (304)
T 2ynn_A 149 ----------NPKD------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IK 211 (304)
T ss_dssp ----------CTTC------TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EE
T ss_pred ----------CCCC------CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EE
Confidence 0100 0135677889999999999887766665 6678999999987 7889999999997 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
|||+..+ ..+..+ .|+. ..|.+++|+|++++||+++.||+|+|||+.++.....+..|
T Consensus 212 iWd~~~~--------------~~~~~~-~~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 212 IWDYQTK--------------SCVATL-EGHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EEETTTT--------------EEEEEE-ECCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEeCCCC--------------ccceee-CCCC-CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 9999875 445555 3433 45999999999999999999999999999988766667665
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-21 Score=208.41 Aligned_cols=227 Identities=12% Similarity=0.222 Sum_probs=162.3
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++.+++++. ...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|... ..
T Consensus 129 Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~------------V~ 196 (410)
T 1vyh_C 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------VS 196 (410)
T ss_dssp SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC------------EE
T ss_pred CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC------------EE
Confidence 37899999999999999985 6789999996 556655 78899999999999999888776421 22
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.+++.| ++|+.++.+ +.+|+ ....+.+. ...++.. ...
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd-----------------------------~~~~~~~~---~~~~h~~------~v~ 238 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWE-----------------------------VQTGYCVK---TFTGHRE------WVR 238 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEE-----------------------------TTTCCEEE---EEECCSS------CEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEE-----------------------------CCCCcEEE---EEeCCCc------cEE
Confidence 344444 455555332 22221 11110000 0001100 000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---------------
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS--------------- 279 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd--------------- 279 (779)
.+. .+++ | ..++++..||.|+|||+.+++++..+.+|...|.+++|+|+
T Consensus 239 ~~~---------~~~~----g---~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 239 MVR---------PNQD----G---TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEE---------ECTT----S---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEE---------ECCC----C---CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 000 0010 1 13566778999999999999999999999999999999997
Q ss_pred -----CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 280 -----GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 280 -----G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
|.+|++|+.||+ |+|||+..+ ..+..+ .|+ ...|.+++|+|++++|++++.||+|+||
T Consensus 303 ~~~~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~-~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp -----CCEEEEEETTSE-EEEEETTTT--------------EEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred ccCCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEE-ECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 789999999997 999999875 344555 343 3459999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCCC
Q 004015 355 AINPLGGSVNFQPTDANF 372 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~~~ 372 (779)
|+........+.+|...+
T Consensus 366 d~~~~~~~~~~~~h~~~v 383 (410)
T 1vyh_C 366 DYKNKRCMKTLNAHEHFV 383 (410)
T ss_dssp CCTTSCCCEEEECCSSCE
T ss_pred ECCCCceEEEEcCCCCcE
Confidence 998887777888885443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-20 Score=197.02 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=98.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++++..||.|++||+++++++..+.+|...|.+++|+|+|.+||||+.||+ |+|||+... ..+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~--------------~~~~ 276 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRAD--------------REVA 276 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCC--------------cEEE
Confidence 3566778999999999999999999999999999999999999999999998 899999864 2223
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
.+........+.+++|+||+++|++++.|++|+|||+........+.+|...+.
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~ 330 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence 332222223488999999999999999999999999988766667778865443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-20 Score=200.35 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=157.4
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+|++++.+++ ...|.+|+|+ +++||+ +.|++|++||+.+++++.++..|... .
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc------------e
Confidence 7899999999999999886 3569999996 567766 67899999999999999999877432 2
Q ss_pred cceeecCceeEeeCCCc--eecCCCc--cCCccccccc--cc-ccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 138 GPLAVGPRWLAYSGSPV--VVSNDGR--VNPQHLMQSR--SF-SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~--i~~~sgr--vspq~ls~s~--~~-s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..++..++.|+.++.+. ..++... ..-..+.... .. .....+|..++....+. ...+.+.......
T Consensus 193 ~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~-------~v~i~~~~~~~~~ 265 (420)
T 4gga_A 193 GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-------LVNVWPSAPGEGG 265 (420)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-------CEEEEESSCCSSC
T ss_pred EEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc-------cceEEeecccccc
Confidence 34556667777776542 2222110 0000000000 00 00011233332222111 1111111000000
Q ss_pred cccccccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-
Q 004015 211 QYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS- 287 (779)
.............+.. + ++.. ..++ ....+..||.|+|||+.+++++..+..| ..|.++.|+|++..|++++
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~--~~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQ--SNVL--ATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTC--TTEE--EEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEEC
T ss_pred ceeeeeecccCCceeeeeeCCCc--ccEE--EEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEe
Confidence 0000000000011110 0 1110 0111 0123567899999999999999988876 4789999999999998876
Q ss_pred -CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 288 -VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 288 -~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.||+ |+|||+.++ ..+.++ +|+. ..|.+|+|||||++||+|+.|++|+||++......
T Consensus 341 ~~d~~-I~iwd~~~~--------------~~v~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 341 FAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 6787 899999865 455666 4654 46999999999999999999999999999765433
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-21 Score=204.70 Aligned_cols=219 Identities=12% Similarity=0.128 Sum_probs=137.0
Q ss_pred CEEEEEECCCCcEEEEEe-----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
++|+|||+.+++.+...+ +...|.+|+|+ +++|++ +.+++|++||+.+++++..+..|...
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----------- 183 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----------- 183 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----------
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-----------
Confidence 679999999998765443 35789999996 556655 67899999999999999999876431
Q ss_pred cccceeecC---ceeEeeCC--CceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP---RWLAYSGS--PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp---RwLAyas~--~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.+ ..|+.++. .+.+|+... .+.+.
T Consensus 184 -v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-----------------------------~~~~~--------------- 218 (357)
T 4g56_B 184 -VNCVAACPGKDTIFLSCGEDGRILLWDTRK-----------------------------PKPAT--------------- 218 (357)
T ss_dssp -EEEEEECTTCSSCEEEEETTSCEEECCTTS-----------------------------SSCBC---------------
T ss_pred -EEEEEEccCCCceeeeeccCCceEEEECCC-----------------------------Cceee---------------
Confidence 22344432 23333322 122332110 00000
Q ss_pred cccccccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe
Q 004015 211 QYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS 287 (779)
... .......+.. + ++.. ...++.+..+|.|+|||+.+++++..+.+|..+|++|+|+|+| ++||||+
T Consensus 219 -~~~--~~~~~~~v~~v~~sp~~------~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 219 -RID--FCASDTIPTSVTWHPEK------DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp -BCC--CTTCCSCEEEEEECTTS------TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred -eee--eccccccccchhhhhcc------cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe
Confidence 000 0000000000 0 0100 0134566789999999999999999999999999999999997 6899999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.||+ |+|||+..+ ..+..+ ++ ...|++|+||| |+++||+++.||+|+||++...+....+
T Consensus 290 ~D~~-i~iwd~~~~--------------~~~~~~--~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 290 EDCT-VAVLDADFS--------------EVFRDL--SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp TTSC-EEEECTTSC--------------EEEEEC--CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--------
T ss_pred CCCE-EEEEECCCC--------------cEeEEC--CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccc
Confidence 9998 899999865 333332 43 34699999998 8999999999999999999876554443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=184.30 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=152.3
Q ss_pred CEEEEEECCCCcEEEEEeC---CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf---~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+|++++++++ ...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------~ 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------E
Confidence 6799999999999999985 4569999996 566665 67899999999999999999887432 1
Q ss_pred cceeecCceeEeeCCCce--ecC--CCccCCccccccc---ccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVV--VSN--DGRVNPQHLMQSR---SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i--~~~--sgrvspq~ls~s~---~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..++..+..|+.++.... .+. .+......+.... ........+..++....+ |...+.+.......
T Consensus 113 ~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 113 GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------NLVNVWPSAPGEGG 185 (318)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEEESSCBTTB
T ss_pred EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------cceeEEECCCCccc
Confidence 224444566666654321 111 1100000000000 000011123333222111 11112221110000
Q ss_pred cccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-
Q 004015 211 QYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS- 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS- 287 (779)
...........+.+... .+.. ..++ .+..+..++.|+|||.........+ .|...|.+++|+|++..|++++
T Consensus 186 ~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 186 WVPLQTFTQHQGAVKAVAWCPWQ--SNVL--ATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp SCCSEEECCCCSCEEEEEECTTS--TTEE--EEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEEC
T ss_pred ccceeeecccCCceEEEEecCCC--CcEE--EEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEE
Confidence 00000000000111100 0100 0000 1235667899999999988776554 5677899999999999988776
Q ss_pred -CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 288 -VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 288 -~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.||+ |+|||+.++ ..+.++ +|+. ..|.+|+||||+++||+++.||+|+|||+...
T Consensus 261 ~~d~~-i~iwd~~~~--------------~~~~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6887 899999875 455566 4543 46999999999999999999999999999653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=192.86 Aligned_cols=173 Identities=15% Similarity=0.227 Sum_probs=139.7
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++.+.++.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|..+
T Consensus 143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~-------------- 208 (321)
T 3ow8_A 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-------------- 208 (321)
T ss_dssp TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--------------
T ss_pred CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc--------------
Confidence 37899999999999998876 5679999996 566665 67899999999999999988765321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ +.|++.. ++.
T Consensus 209 -v----~~l~~sp---------------------------d~~------------------------------------- 219 (321)
T 3ow8_A 209 -I----RSLTFSP---------------------------DSQ------------------------------------- 219 (321)
T ss_dssp -C----CEEEECT---------------------------TSC-------------------------------------
T ss_pred -e----eEEEEcC---------------------------CCC-------------------------------------
Confidence 1 1123321 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
.++++..||.|+|||+.+++.+..+.+|...|.+|+|+|+|++|++++.||+ |+|||+
T Consensus 220 ---------------------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~ 277 (321)
T 3ow8_A 220 ---------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDV 277 (321)
T ss_dssp ---------------------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred ---------------------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeC
Confidence 1233456899999999999999999999999999999999999999999998 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.++ ..+.++. ++ ...|.+++|+||+++|++++.||+|+|||+
T Consensus 278 ~~~--------------~~~~~~~-~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 278 GTR--------------TCVHTFF-DH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTT--------------EEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCC--------------EEEEEEc-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 875 4455553 33 345999999999999999999999999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-19 Score=184.23 Aligned_cols=186 Identities=15% Similarity=0.226 Sum_probs=146.6
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..|...
T Consensus 45 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------- 109 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--------------- 109 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------
T ss_pred CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---------------
Confidence 6799999999999998874 6789999996 456655 67899999999999999988766321
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ..+++.. ++.
T Consensus 110 v----~~~~~~~---------------------------~~~-------------------------------------- 120 (312)
T 4ery_A 110 V----FCCNFNP---------------------------QSN-------------------------------------- 120 (312)
T ss_dssp E----EEEEECS---------------------------SSS--------------------------------------
T ss_pred E----EEEEEcC---------------------------CCC--------------------------------------
Confidence 1 0122220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+|++|++++.||+ |+|||+.
T Consensus 121 --------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~ 179 (312)
T 4ery_A 121 --------------------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTA 179 (312)
T ss_dssp --------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETT
T ss_pred --------------------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECC
Confidence 1233456789999999999999999999999999999999999999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.+ ..+..+... ....|..++|+|++++|++++.||+|+|||+........+.+|.
T Consensus 180 ~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 180 SG--------------QCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp TC--------------CEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred CC--------------ceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 65 233444322 23458999999999999999999999999998876656666664
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=198.41 Aligned_cols=230 Identities=9% Similarity=0.119 Sum_probs=150.1
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.++++++++.. ...|.+|+|+ +++|+ .+.|++|++||+.+++++.++..|... ..
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~------------v~ 238 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW------------VR 238 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EE
T ss_pred CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc------------EE
Confidence 37799999999999998874 6789999995 45554 578999999999999999999877431 12
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCc-ccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQ-HLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq-~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.+++.+ ++||.++.+ +.+|+.....+. .+. .....+...+.. -+..+..+....
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---------~h~~~v~~~~~~------------~~~~~~~~~~~~ 297 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---------EHRHVVECISWA------------PESSYSSISEAT 297 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---------CCSSCEEEEEEC------------CSCGGGGGGGCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec---------CCCceEEEEEEc------------Ccccccchhhhc
Confidence 233333 556655432 333421100000 000 000111110000 000000000000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+ ... ... . .. ...++++..||.|+|||+.++.++..+.+|...|.+|+|+|+|++|++|+.||+ |
T Consensus 298 ------~--~~~-~~~-~-~~---g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i 362 (410)
T 1vyh_C 298 ------G--SET-KKS-G-KP---GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-L 362 (410)
T ss_dssp ------S--CC-------------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-E
T ss_pred ------c--ccc-ccc-C-CC---CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-E
Confidence 0 000 000 0 00 124567888999999999999999999999999999999999999999999997 9
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+|||+..+ ..+..+ .++ ...|.+++|+|++.+||+|+.||+|+||++
T Consensus 363 ~vwd~~~~--------------~~~~~~-~~h-~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 363 RVWDYKNK--------------RCMKTL-NAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECCTTS--------------CCCEEE-ECC-SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEECCCC--------------ceEEEE-cCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999764 222333 233 345999999999999999999999999986
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-19 Score=203.19 Aligned_cols=219 Identities=14% Similarity=0.158 Sum_probs=152.7
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+++++.+.++. +...|.+|+|+ +++||+ +.|++|+|||+.+.+ .+.++..|.. ..
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~------------~v 106 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG------------PV 106 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS------------CE
T ss_pred CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCC------------ce
Confidence 679999999999999886 47889999996 677776 578999999997654 4456655532 12
Q ss_pred cceeecC--ceeEeeCCC------ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 138 GPLAVGP--RWLAYSGSP------VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~------~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
..++++| +.||.++.. +..|+.|. .+.. ..|+.
T Consensus 107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-------------------------------~~~~---l~gh~----- 147 (611)
T 1nr0_A 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGT-------------------------------SNGN---LTGQA----- 147 (611)
T ss_dssp EEEEECTTSCEEEEEECCSSCSEEEEETTTCC-------------------------------BCBC---CCCCS-----
T ss_pred EEEEECCCCCEEEEEECCCCceeEEEEeeCCC-------------------------------Ccce---ecCCC-----
Confidence 3455554 555554311 11222110 0000 00000
Q ss_pred ccccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 210 SQYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
..+... ++. + ...++++..|++|+|||..+++++.+|.+|...|.+++|+|||++||||+
T Consensus 148 ------------~~v~~v~f~p~----~--~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 148 ------------RAMNSVDFKPS----R--PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp ------------SCEEEEEECSS----S--SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ------------CCceEEEECCC----C--CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 000000 010 0 01256778899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec------CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r------G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.||+ |+|||+.++ ..+..+.. ++ ...|.+++|+||+++||+++.|++|+|||+.....
T Consensus 210 ~D~~-i~lwd~~~g--------------~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 210 GDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TTSC-EEEEETTTC--------------CEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCc-EEEEECCCC--------------cEeeeecccccccccc-CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 9998 899998765 23334422 33 34599999999999999999999999999987655
Q ss_pred ceeecc
Q 004015 362 SVNFQP 367 (779)
Q Consensus 362 ~~~~~~ 367 (779)
...+..
T Consensus 274 ~~~~~~ 279 (611)
T 1nr0_A 274 EKTIPV 279 (611)
T ss_dssp EEEEEC
T ss_pred eeeecC
Confidence 555543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-19 Score=184.94 Aligned_cols=196 Identities=12% Similarity=0.192 Sum_probs=133.0
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+++++++.++. +...|.+|+|+ +++|+ .+.|++|++||+. .+++.++..|... ..
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~------------v~ 152 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW------------VS 152 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSC------------EE
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCc------------EE
Confidence 4789999999999999987 47899999996 44554 5789999999996 4566666555211 00
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++.... - . ..++
T Consensus 153 ~-------~~~~~~~-------------~-----~---~~~~-------------------------------------- 166 (319)
T 3frx_A 153 Q-------VRVVPNE-------------K-----A---DDDS-------------------------------------- 166 (319)
T ss_dssp E-------EEECCC---------------------------C--------------------------------------
T ss_pred E-------EEEccCC-------------C-----C---CCCc--------------------------------------
Confidence 1 1111000 0 0 0000
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
..++++..+|.|++||+.+.+....+.+|..+|.+|+|+|+|++||+++.||+ |+|||+
T Consensus 167 --------------------~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~ 225 (319)
T 3frx_A 167 --------------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNL 225 (319)
T ss_dssp --------------------CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEET
T ss_pred --------------------cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEEC
Confidence 02345567899999999999999999999999999999999999999999997 999999
Q ss_pred CCCCC-----CCCC----ccCCC--------CceeEEEEee---------cC---C---CcccEEEEEEcCCCCEEEEEe
Q 004015 299 IPGIL-----GTSS----ACDAG--------TSYVHLYRLQ---------RG---L---TNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 299 ~~~~~-----g~~s----~~~~~--------~s~~~l~~l~---------rG---~---t~a~I~sIaFSpDg~~LAtgS 346 (779)
..... .... +..+. .....++.+. .. . ....|.+++|||||++|++|+
T Consensus 226 ~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 226 AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp TTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 76411 0000 00000 0111222211 10 0 122377899999999999999
Q ss_pred CCCeEEEEecCC
Q 004015 347 SRGTSHLFAINP 358 (779)
Q Consensus 347 ~DGTVhIwdl~~ 358 (779)
.||+|+||++.+
T Consensus 306 ~Dg~i~vWd~~t 317 (319)
T 3frx_A 306 TDNVIRVWQVMT 317 (319)
T ss_dssp TTSCEEEEEEEE
T ss_pred cCceEEEEEEee
Confidence 999999998864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=189.60 Aligned_cols=201 Identities=14% Similarity=0.197 Sum_probs=143.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.+++.+..++ +...|.+|+|+ +++|+ .+.|++|++||+.++++..++.... ...
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-------------~v~ 210 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-------------GVT 210 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-------------CEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC-------------CcE
Confidence 3679999999999999987 47789999995 44554 5789999999999999887774321 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+++. | .+|.
T Consensus 211 -------~~~~~-------------~-------------~~~~------------------------------------- 220 (393)
T 1erj_A 211 -------TVAVS-------------P-------------GDGK------------------------------------- 220 (393)
T ss_dssp -------EEEEC-------------S-------------TTCC-------------------------------------
T ss_pred -------EEEEE-------------C-------------CCCC-------------------------------------
Confidence 11221 0 0111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeCCCC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-------RAHKSPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-------~aHt~~IsaLaFSPdG~lLATaS~DGt 291 (779)
.++.+..+|.|+|||+.++..+..+ .+|...|.+|+|+|+|++|++|+.||+
T Consensus 221 ---------------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 221 ---------------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ---------------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 1233456889999999999888777 689999999999999999999999997
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
|+|||+........... .........+ .|+. ..|.+++|+|++++|++++.||+|+|||+........+++|...
T Consensus 280 -v~~wd~~~~~~~~~~~~--~~~~~~~~~~-~~h~-~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 280 -VKLWNLQNANNKSDSKT--PNSGTCEVTY-IGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp -EEEEEC-----------------CEEEEE-ECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred -EEEEECCCCCCcccccC--CCCCcceEEE-eccc-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 99999976311000000 0001122333 3433 35999999999999999999999999999987776777888543
Q ss_pred C
Q 004015 372 F 372 (779)
Q Consensus 372 ~ 372 (779)
+
T Consensus 355 v 355 (393)
T 1erj_A 355 V 355 (393)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-19 Score=186.58 Aligned_cols=172 Identities=13% Similarity=0.189 Sum_probs=134.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++.+.++. +...|.+++|+ +++|++ +.++.|++||+.+++++.++..|... ..
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~------------v~ 230 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------------IN 230 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC------------EE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC------------EE
Confidence 3779999999999999987 46789999996 456655 67999999999999999888765321 11
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++. | ++.
T Consensus 231 ~-------v~~~-------------p--------------~~~------------------------------------- 239 (340)
T 1got_B 231 A-------ICFF-------------P--------------NGN------------------------------------- 239 (340)
T ss_dssp E-------EEEC-------------T--------------TSS-------------------------------------
T ss_pred E-------EEEc-------------C--------------CCC-------------------------------------
Confidence 1 2222 0 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.++++..||.|+|||+.+++.+..+. .+...|.+++|+|+|++|++|+.||+ |+||
T Consensus 240 ---------------------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vw 297 (340)
T 1got_B 240 ---------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVW 297 (340)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEE
T ss_pred ---------------------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEE
Confidence 12334568999999999998887776 34468999999999999999999997 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|+... ..+..+ .|+. ..|.+++|+||+++||+|+.||+|+||+
T Consensus 298 d~~~~--------------~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 298 DALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTTC--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcccC--------------cEeeEe-ecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 98764 233444 3443 4699999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=192.56 Aligned_cols=117 Identities=12% Similarity=0.170 Sum_probs=93.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..||+|+|||+.+++++..|.+|+..|.+++|+|++. +|+|++.||+ |+|||+..+ ..+..
T Consensus 143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~~--------------~~~~~ 207 (344)
T 4gqb_B 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRCP--------------KPASQ 207 (344)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTSS--------------SCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccc-ccccccccc--------------ceeee
Confidence 3456789999999999999999999999999999999985 8999999998 899999875 22233
Q ss_pred eecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 321 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+........+.+++|+| ++++||+|+.||+|+|||+........+.+|...+.
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVT 261 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence 32222234589999999 567899999999999999998888888888865443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=187.20 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=157.9
Q ss_pred EEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcE-EEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 65 VVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 65 tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rl-LaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++..|+..+..+.++|+. ...|++|+|+ +++ ++.+.|++|+|||+.+++++.++..|... ...+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~------------v~~~ 114 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW------------VMEC 114 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT------------CCCC
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC------------EEEE
Confidence 355677778888888875 7899999996 444 45578999999999999999999877432 1234
Q ss_pred eecC--ceeEeeCCC--ceecCCCc-------cCC-ccccccc------ccccccCCCcceeeeecccccchhceeeecC
Q 004015 141 AVGP--RWLAYSGSP--VVVSNDGR-------VNP-QHLMQSR------SFSGFASNGSRVAHYAKESSKHLAAGIVNLG 202 (779)
Q Consensus 141 Algp--RwLAyas~~--~i~~~sgr-------vsp-q~ls~s~------~~s~~~s~g~~va~~A~~~sK~La~Gl~~lG 202 (779)
+++| ++||.++.+ +.+|+... ... ..+.... .+.+ ..+..++....+ |...++
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~--~~~~~l~s~s~D-------~~i~~w 185 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQETRLITGSGD-------QTCVLW 185 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS--SSSSCEEEECTT-------SCEEEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec--CCCCEEEEECCC-------CcEEEE
Confidence 4544 678877653 33443110 000 0011000 0000 011111111111 111222
Q ss_pred CccccccccccccccCCC-cCccccccCCCCCCCccCCcccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCCC
Q 004015 203 DLGYKKLSQYCSEFLPDS-QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~-~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
|.........+....+.+ ...+....... .+ ...++++..||.|+|||++ ...++..+.+|.++|.+|+|+|+|
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~---~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINS-LN---ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECS-SS---CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeec-CC---CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 221111000000000000 00000000000 00 1246778899999999998 557889999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC-----CcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----TNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~-----t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
++||||+.||+ |+|||+..+ ..+..+.... ....|.+++|||+|++|++|+.||+|+|||
T Consensus 262 ~~l~s~s~D~~-i~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 262 QRFGTGSDDGT-CRLFDMRTG--------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SEEEEECSSSC-EEEEETTTT--------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CeEEEEcCCCe-EEEEECCCC--------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 99999999998 899999875 2333332211 112388999999999999999999999999
Q ss_pred cCCCCCceee
Q 004015 356 INPLGGSVNF 365 (779)
Q Consensus 356 l~~~gg~~~~ 365 (779)
+........+
T Consensus 327 ~~~~~~~~~~ 336 (380)
T 3iz6_a 327 TLLAEMVLNL 336 (380)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCceEEEE
Confidence 9876555555
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-18 Score=183.76 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=133.8
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++|+|||+.++++++++.. ...|..+.++ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~------------ 242 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD------------ 242 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------
T ss_pred CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC------------
Confidence 37899999999999999985 6789999884 345554 78999999999999999888766321
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.+. +++. | ++.
T Consensus 243 v~~-------v~~~-------------p--------------~~~----------------------------------- 253 (354)
T 2pbi_B 243 VNS-------VRYY-------------P--------------SGD----------------------------------- 253 (354)
T ss_dssp EEE-------EEEC-------------T--------------TSS-----------------------------------
T ss_pred eEE-------EEEe-------------C--------------CCC-----------------------------------
Confidence 111 2222 0 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.++++..||.|+|||+++.+.+..+..+ ...+++++|+|+|++|++++.||+ |+
T Consensus 254 -----------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~ 309 (354)
T 2pbi_B 254 -----------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-IN 309 (354)
T ss_dssp -----------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EE
T ss_pred -----------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EE
Confidence 1233456899999999999888777644 458999999999999999999998 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|||+..+ ..+..+ .++ ...|.+++|||||++||+++.||+|+||+
T Consensus 310 vwd~~~~--------------~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 310 VWDVLKG--------------SRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTTC--------------SEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCC--------------ceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999765 233444 344 34699999999999999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-17 Score=176.99 Aligned_cols=189 Identities=10% Similarity=0.106 Sum_probs=141.0
Q ss_pred CEEEEEECCCCcEEEEEe---CCCCEEEEEEcC---cEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 64 TVVHFYSLRSQSYVHMLK---FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk---f~s~V~sV~~s~---rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
++|+|||+.+++....++ +...|.+|+|+. ++|++ +.++.|++||+.+ +.+..+..+....
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------- 163 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------- 163 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-----------
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-----------
Confidence 679999999999998887 578999999964 45554 6789999999996 5555554431100
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.++ ..+++.. ++.
T Consensus 164 -~~v----~~~~~~~---------------------------~~~----------------------------------- 176 (383)
T 3ei3_B 164 -YWY----CCVDVSV---------------------------SRQ----------------------------------- 176 (383)
T ss_dssp -CCE----EEEEEET---------------------------TTT-----------------------------------
T ss_pred -CCe----EEEEECC---------------------------CCC-----------------------------------
Confidence 001 1122221 111
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINI 295 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~V 295 (779)
.++.+..+|.|++||+ +++++..+.+|...|.+|+|+|+|+ +|++++.||+ |+|
T Consensus 177 -----------------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~i 231 (383)
T 3ei3_B 177 -----------------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKL 231 (383)
T ss_dssp -----------------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEE
T ss_pred -----------------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEE
Confidence 1233456799999999 5778999999999999999999999 9999999987 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
||+..... ....+..+ + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 232 wd~~~~~~----------~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 232 WDLRNIKD----------KNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp EEGGGCCS----------TTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred EeCCCCCc----------ccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99986310 01233333 2 234699999999 99999999999999999999888777777774
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=198.69 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=88.4
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 240 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.++.+..||.|+|||+.++.. +.. .+|...|++|+|||||++||+++.|++ |++|++... ...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~-------------~~~ 526 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN-------------FEL 526 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT-------------TEE
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC-------------Cce
Confidence 466778899999999987653 344 689999999999999999999999998 899998752 011
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCce--eeccC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV--NFQPT 368 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~--~~~~H 368 (779)
+.....+.+...|.+++|||||++||+++.|++|+||++....... .+.+|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 1110122234569999999999999999999999999998765332 34556
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-18 Score=175.86 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=141.7
Q ss_pred CCEEEEEECCCCc-----EEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQS-----YVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tge-----~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.+++ .+++++. ...|.+++|+ +++|+ .+.++.|++|+............+....
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~-------- 131 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV-------- 131 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--------
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCce--------
Confidence 3779999997754 4566654 6789999996 55555 4788999999999998877776542211
Q ss_pred cccccceeec--CceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 134 GIGYGPLAVG--PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 134 ~~~~~piAlg--pRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
..+... .++|+.++.+ +.+|+.... ... -....+... .+
T Consensus 132 ----~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-----------------------------~~~--~~~~~~~~~--~v 174 (340)
T 4aow_A 132 ----LSVAFSSDNRQIVSGSRDKTIKLWNTLGV-----------------------------CKY--TVQDESHSE--WV 174 (340)
T ss_dssp ----EEEEECTTSSCEEEEETTSCEEEECTTSC-----------------------------EEE--EECSSSCSS--CE
T ss_pred ----eEEEEeecCccceeecCCCeEEEEEeCCC-----------------------------ceE--EEEeccccC--cc
Confidence 111111 1344443221 122211000 000 000000000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
. +....++. . ...++++..++.|++||+.+++++..+.+|..+|++|+|+|+|++||+|+.|
T Consensus 175 ~--~~~~~~~~-----------~-----~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 175 S--CVRFSPNS-----------S-----NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp E--EEEECSCS-----------S-----SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred c--ceEEccCC-----------C-----CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 0 00000000 0 1123456788999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCC-----CCCC------------ccCCCCceeEEEEeecC----------------CCcccEEEEEEc
Q 004015 290 GHNINIFKIIPGIL-----GTSS------------ACDAGTSYVHLYRLQRG----------------LTNAVIQDISFS 336 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~-----g~~s------------~~~~~~s~~~l~~l~rG----------------~t~a~I~sIaFS 336 (779)
|+ |+|||+..... +... ..........+|.+..+ .....|.+++|+
T Consensus 237 g~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 237 GQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp CE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred Ce-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 97 89999886411 0000 00000011122222110 123358999999
Q ss_pred CCCCEEEEEeCCCeEEEEecCCC
Q 004015 337 DDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 337 pDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
|||++||+|+.||+|+||++.++
T Consensus 316 ~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 316 ADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999999999999999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=179.10 Aligned_cols=234 Identities=13% Similarity=0.154 Sum_probs=142.0
Q ss_pred CEEEEEECCC--CcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRS--QSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~T--ge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+.+ ++++.+|+ +..+|.+|+|+ +++|+. +.|++|++||+.+++ .+.++..|..
T Consensus 31 ~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~---------- 100 (297)
T 2pm7_B 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA---------- 100 (297)
T ss_dssp SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS----------
T ss_pred CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC----------
Confidence 6799999974 46778887 47899999995 456665 779999999999874 4555554432
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
....+++.| .+||.++.+ +.+|+. ...+.... ....++..
T Consensus 101 --~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~-----------------------------~~~~~~~~-~~~~~h~~-- 146 (297)
T 2pm7_B 101 --SVNSVQWAPHEYGPMLLVASSDGKVSVVEF-----------------------------KENGTTSP-IIIDAHAI-- 146 (297)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEEB-----------------------------CSSSCBCC-EEEECCSS--
T ss_pred --ceeEEEeCcCCCCcEEEEEECCCcEEEEEe-----------------------------cCCCceee-eeeecccC--
Confidence 123344443 355554332 222211 00000000 00000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCC---
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSG--- 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG--- 280 (779)
.+. +-...|+...... ...... -...++++..||.|+|||+.++. ++..|.+|...|.+|+|+|++
T Consensus 147 ~v~--~~~~~p~~~~~~~-~~~~~~----~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 147 GVN--SASWAPATIEEDG-EHNGTK----ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp CEE--EEEECCCC-----------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ccc--eEeecCCcccccc-cCCCCC----CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 000 0000111000000 000000 01246778889999999998765 677899999999999999995
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+|||++.||+ |+|||+.... + . .....+........|.+++|+||+++||+++.||+|+||+....+
T Consensus 220 ~~las~s~D~~-v~iWd~~~~~-~---------~-~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 220 SYMASVSQDRT-CIIWTQDNEQ-G---------P-WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp EEEEEEETTSC-EEEEEESSTT-S---------C-CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eEEEEEECCCc-EEEEEeCCCC-C---------c-cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 89999999998 8999987530 0 0 111122111123459999999999999999999999999987543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=180.87 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=146.8
Q ss_pred CEEEEEECCCCcEEEEEe----CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC--cEEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHMLK----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL--EIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk----f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
++|+|||+.+++.+.... +...|.+|+|+ +++|++ +.|++|++||+.+. +++.++..|...
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~---------- 107 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE---------- 107 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC----------
T ss_pred CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC----------
Confidence 679999999987654332 46789999996 566665 67999999999876 467777766432
Q ss_pred ccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec-CCcccccc
Q 004015 135 IGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL-GDLGYKKL 209 (779)
Q Consensus 135 ~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l-Gd~~~~~l 209 (779)
...++++| ++||.++.+ +.+|+. +..+... -+..+ ++.. .+
T Consensus 108 --v~~v~~sp~~~~l~s~s~D~~v~iwd~-----------------------------~~~~~~~-~~~~~~~h~~--~v 153 (345)
T 3fm0_A 108 --VKSVAWAPSGNLLATCSRDKSVWVWEV-----------------------------DEEDEYE-CVSVLNSHTQ--DV 153 (345)
T ss_dssp --EEEEEECTTSSEEEEEETTSCEEEEEE-----------------------------CTTSCEE-EEEEECCCCS--CE
T ss_pred --ceEEEEeCCCCEEEEEECCCeEEEEEC-----------------------------CCCCCeE-EEEEecCcCC--Ce
Confidence 23355544 566665432 223311 0000000 00000 0000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
... ...|+ ...++.+..||.|+|||+.++. ++.++.+|...|.+|+|+|+|++||+++
T Consensus 154 ~~~--~~~p~------------------~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 154 KHV--VWHPS------------------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp EEE--EECSS------------------SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEE--EECCC------------------CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 000 00011 1135677889999999998875 5578999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCC-CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 288 VQGHNINIFKIIPGILGT-SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~-~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.||+ |+|||+....... ............+..+ .+.+...|++++|+|++.+||+++.|++|+||++....
T Consensus 214 ~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 214 DDRT-VRIWRQYLPGNEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp TTSC-EEEEEEECTTCTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCCe-EEEeccccCCCCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9998 8999974321100 0000001122334444 34445569999999999999999999999999997643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=190.23 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=90.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+.+..+|.|+|||+.. +.+..+.+|..+|++|+|+|++. +|++|+.||+ |+|||+....... . +.
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~~~-----------~-~~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGKA-----------S-FL 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCSSS-----------C-CS
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEecccccccc-----------e-EE
Confidence 3456789999999975 56788999999999999999986 8899999998 8999998641100 0 01
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
...++ ...|.+++|||||++|++++.||+|+||++........+..|..
T Consensus 291 ~~~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 291 YSLPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp BCCBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred Eeeec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 11222 34599999999999999999999999999999888888877743
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=172.47 Aligned_cols=242 Identities=10% Similarity=0.127 Sum_probs=157.5
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+.+++ +...|.+++|+ +++|++ +.++.|++||+.+++++..+. +.. ....
T Consensus 54 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~------------~v~~ 120 (369)
T 3zwl_B 54 SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV------------PVKR 120 (369)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS------------CEEE
T ss_pred CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC------------CeEE
Confidence 679999999999999998 57899999996 556555 678999999999999998886 321 1223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+++.| ++|+.+..... .....+..|.....+... .+..........+..
T Consensus 121 ~~~~~~~~~l~~~~~~~~----------------------~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~------ 171 (369)
T 3zwl_B 121 VEFSPCGNYFLAILDNVM----------------------KNPGSINIYEIERDSATH-ELTKVSEEPIHKIIT------ 171 (369)
T ss_dssp EEECTTSSEEEEEECCBT----------------------TBCCEEEEEEEEECTTTC-CEEEECSSCSEEEEC------
T ss_pred EEEccCCCEEEEecCCcc----------------------CCCCEEEEEEecCCccce-eecccccceeeeccC------
Confidence 44444 55555432100 000111111111110000 000000000000000
Q ss_pred CCCcCcccc--ccCCCCCCCccCCcccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQS--AIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~s--a~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
..+...+.. ..+. ...++.+..+|.|++||+.+ ...+..+..|..+|.+++|+|+|++|++++.||+ |+
T Consensus 172 ~~~~~~~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~ 243 (369)
T 3zwl_B 172 HEGLDAATVAGWSTK-------GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SF 243 (369)
T ss_dssp CTTCCCEEEEEECGG-------GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EE
T ss_pred CcCccceeEEEEcCC-------CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EE
Confidence 000000000 0010 11345667889999999999 7889999999999999999999999999999987 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC--------------eEEEEecCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG--------------TSHLFAINPLG 360 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG--------------TVhIwdl~~~g 360 (779)
|||+..+ ..+..+. ....+.+++|+|+++++++++.++ ++++|++....
T Consensus 244 v~d~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 244 LVDVSTL--------------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEETTTC--------------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred EEECCCC--------------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 9999875 3334443 234599999999999999999999 89999998887
Q ss_pred CceeeccCCCCC
Q 004015 361 GSVNFQPTDANF 372 (779)
Q Consensus 361 g~~~~~~H~~~~ 372 (779)
....+.+|...+
T Consensus 307 ~~~~~~~~~~~v 318 (369)
T 3zwl_B 307 EIGRVQGHFGPL 318 (369)
T ss_dssp EEEEEECCSSCE
T ss_pred chhheecccCcE
Confidence 777777775443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=181.08 Aligned_cols=242 Identities=8% Similarity=0.049 Sum_probs=149.6
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCCCCcEEEEEe---cCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAIL---TNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~T~e~l~tl~---t~p~~~~~p~s~~~~~ 135 (779)
++|++||+.+++.+..+. +...|.+|+|+ +++|++ +.++.|++||+.+++.+..+. .+..
T Consensus 95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------ 162 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD------------ 162 (366)
T ss_dssp CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS------------
T ss_pred CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC------------
Confidence 679999999999999998 68899999995 456665 668999999999999988884 3321
Q ss_pred cccceeecC--ceeEeeCCC--ceecCCCccCC-cccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSP--VVVSNDGRVNP-QHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~--~i~~~sgrvsp-q~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
....++++| ++|+.++.+ +.+|+...... ..+.....+++ ++..++.... ......+...
T Consensus 163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~~~~~~~~~~- 227 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP---NKTNRPFISQ-----------KIHFPDFSTR- 227 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG---GGCSSCCCCE-----------EECCCSEEEC-
T ss_pred ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC---CCCcccccce-----------eeccCccccc-
Confidence 123355544 566666432 33332110000 00000000000 0000000000 0000000000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc--------------EEEEeccCCCCeEEEEE
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--------------VIAQFRAHKSPISALCF 276 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~--------------~v~~f~aHt~~IsaLaF 276 (779)
......+..... ....++.+..+|.|++||+.+.. .+..+..|..+|.+|+|
T Consensus 228 -------~~~~~~v~~~~~-------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (366)
T 3k26_A 228 -------DIHRNYVDCVRW-------LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 293 (366)
T ss_dssp -------SSCSSCCCEEEE-------ETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred -------cCCcceEEEEEE-------cCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence 000000000000 01245677789999999998764 48889999999999999
Q ss_pred cCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 277 DPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 277 SPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+|+ |++||+++.||. |+|||+..+.. ....+..+........|.+++|+||+++|++++.||+|+||
T Consensus 294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGK-LYVWDLEVEDP----------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp EECTTSSEEEEECTTSC-EEEEECCSSSG----------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCCcEEEEEecCCc-EEEEECCCCCC----------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 999 999999999998 89999987510 11133344322113569999999999999999999999999
Q ss_pred ecC
Q 004015 355 AIN 357 (779)
Q Consensus 355 dl~ 357 (779)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=186.64 Aligned_cols=177 Identities=12% Similarity=0.199 Sum_probs=133.6
Q ss_pred CCEEEEEECCCCcEEEEEe------CCCCEEEEEEc---CcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS---SRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s---~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|+|||+++++.+..+. +...|.++.++ +++|+. +.|++|++||++ +.+.+.++..|...
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~------- 251 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD------- 251 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------
Confidence 5789999999999999883 34679999994 455554 789999999998 45666666655321
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
...+ ++. | +|.
T Consensus 252 -----v~~v-------~~~-------------p--------------~~~------------------------------ 262 (380)
T 3iz6_a 252 -----INSV-------KFF-------------P--------------DGQ------------------------------ 262 (380)
T ss_dssp -----CCEE-------EEC-------------T--------------TSS------------------------------
T ss_pred -----eEEE-------EEe-------------c--------------CCC------------------------------
Confidence 1111 221 0 111
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEEcCCCCEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS-------PISALCFDPSGILLV 284 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~-------~IsaLaFSPdG~lLA 284 (779)
.++++..||+|+|||+.++..+..+..|.. .|++++|+|+|++|+
T Consensus 263 ----------------------------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 263 ----------------------------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp ----------------------------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred ----------------------------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 234456789999999999999988876543 489999999999999
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
+|+.||+ |+|||+..+ ..+..+. .++ ...|.+++|||||++||+|+.||+|+||++...
T Consensus 315 ~g~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNGD-CYVWDTLLA--------------EMVLNLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSC-EEEEETTTC--------------CEEEEECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCC-EEEEECCCC--------------ceEEEEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999998 899998764 2333332 333 345999999999999999999999999999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-17 Score=177.82 Aligned_cols=227 Identities=15% Similarity=0.192 Sum_probs=143.5
Q ss_pred CCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tg-------e~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|+|||+.++ ..+.++. +...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 48 D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~------- 120 (343)
T 2xzm_R 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE------- 120 (343)
T ss_dssp TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC-------
T ss_pred CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-------
Confidence 377999999754 4566665 46789999996 456554 77999999999999999999887432
Q ss_pred CccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 132 GIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 132 ~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| ++|+.++.+ +.+|+.... ..+.. .........+..
T Consensus 121 -----v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~----~~~~~~~~~v~~---------------------- 167 (343)
T 2xzm_R 121 -----VYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSS----AEKENHSDWVSC---------------------- 167 (343)
T ss_dssp -----EEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEEC----CTTTSCSSCEEE----------------------
T ss_pred -----EEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeee----ecccCCCceeee----------------------
Confidence 23355554 566665432 333321000 00000 000000000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS 287 (779)
-...|+..... ...+ ....++.+..+|.|+||| .....+..+.+|..+|.+|+|+|+|++||||+
T Consensus 168 ------~~~~~~~~~~~-~~~~-------~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 168 ------VRYSPIMKSAN-KVQP-------FAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ------EEECCCCCSCS-CCCS-------SCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ------eeecccccccc-ccCC-------CCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 00011110000 0000 012456778899999999 45677888999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
.||+ |+|||+.... .....+..+ ..|.+++|+||+++|+++ .|++|+||++.+....
T Consensus 233 ~dg~-v~iwd~~~~~-------------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 233 KDKK-LLIWDILNLT-------------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp TTCE-EEEEESSCCS-------------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred CCCe-EEEEECCCCc-------------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 9997 8999985420 111122222 349999999999998765 5788999999876443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-18 Score=179.47 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=142.4
Q ss_pred CEEEEEECCCCc--EEEEEe-CCCCEEEEEEc----CcEEE-EEeCCeEEEEeCCCC--cEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVA-ICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s----~rlLa-Vs~d~~I~IwD~~T~--e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+++++ ++.+++ +..+|.+|+|+ +++|+ .+.|++|++||+.++ +++.++..|...
T Consensus 35 ~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~--------- 105 (316)
T 3bg1_A 35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS--------- 105 (316)
T ss_dssp TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC---------
T ss_pred CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc---------
Confidence 789999999885 456666 47899999995 45555 578999999999987 456666665321
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| .+||.++.+ +.+|+. ...+....-....++..
T Consensus 106 ---V~~v~~~p~~~g~~lasgs~D~~i~lwd~-----------------------------~~~~~~~~~~~~~~h~~-- 151 (316)
T 3bg1_A 106 ---VNSVCWAPHDYGLILACGSSDGAISLLTY-----------------------------TGEGQWEVKKINNAHTI-- 151 (316)
T ss_dssp ---CCEEEECCTTTCSCEEEECSSSCEEEEEE-----------------------------CSSSCEEECCBTTSSSS--
T ss_pred ---eEEEEECCCCCCcEEEEEcCCCCEEEEec-----------------------------CCCCCcceeeeeccccC--
Confidence 22344443 355555432 222210 00000000000000000
Q ss_pred ccccccccccCCCc-CccccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCC---
Q 004015 208 KLSQYCSEFLPDSQ-NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSG--- 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~-~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG--- 280 (779)
.+. +-...|+.. +.......+.... ....++++..||.|+|||+... +++..|.+|..+|.+|+|+|++
T Consensus 152 ~v~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~ 227 (316)
T 3bg1_A 152 GCN--AVSWAPAVVPGSLIDHPSGQKPN--YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227 (316)
T ss_dssp CBC--CCEECCCCCC------CCSCCCC--CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCS
T ss_pred Ccc--eEEEccccCCccccccccccCcc--ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCC
Confidence 000 000001100 0000000000000 0124677889999999999765 4778899999999999999997
Q ss_pred -CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 281 -ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 281 -~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||+|+.||+ |+||++.....+. .....+. ++ ...|++++|+||+++||+++.||+|+||++...
T Consensus 228 ~~~las~s~D~~-v~iw~~~~~~~~~-------~~~~~~~----~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 228 TSTIASCSQDGR-VFIWTCDDASSNT-------WSPKLLH----KF-NDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp CCEEEEEETTCE-EEEEECSSTTCCC-------CBCCEEE----EC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CceEEEEcCCCe-EEEEEccCccccc-------hhhhhhh----cC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 89999999997 8999987531000 0011121 22 345999999999999999999999999998754
Q ss_pred C
Q 004015 360 G 360 (779)
Q Consensus 360 g 360 (779)
+
T Consensus 295 g 295 (316)
T 3bg1_A 295 G 295 (316)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=176.99 Aligned_cols=109 Identities=10% Similarity=0.158 Sum_probs=90.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+..||.|+|||+.+++.+..|++|...|.+|+|+|++++||||+.||+ |+|||+..+ ......+
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~-------------~~~~~~~- 136 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENN-------------WALEQTF- 136 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEEGGGT-------------TEEEEEE-
T ss_pred EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe-EEEEECCCC-------------cchhhhh-
Confidence 3456899999999999999999999999999999999999999999998 899998764 1122223
Q ss_pred cCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 323 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 323 rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.++. ..|.+++|+| |+.+||+++.|++|+|||+........+..
T Consensus 137 ~~h~-~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~ 181 (304)
T 2ynn_A 137 EGHE-HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (304)
T ss_dssp CCCC-SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred cccC-CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc
Confidence 4443 4599999999 789999999999999999987665555543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=175.51 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=138.0
Q ss_pred CCEEEEEECCC-----CcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~T-----ge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|++||+.+ +..+++++. ...|.+++|+ +++|+ .+.|++|++||+.+++++.++..|...
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~--------- 109 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD--------- 109 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc---------
Confidence 37899999864 345667764 6789999996 55555 478999999999999999998876321
Q ss_pred cccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 134 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 134 ~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.. .+++.. ++.
T Consensus 110 ---v~-------~~~~~~---------------------------~~~-------------------------------- 120 (319)
T 3frx_A 110 ---VM-------SVDIDK---------------------------KAS-------------------------------- 120 (319)
T ss_dssp ---EE-------EEEECT---------------------------TSC--------------------------------
T ss_pred ---EE-------EEEEcC---------------------------CCC--------------------------------
Confidence 01 122210 111
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC------CCEEEEEe
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------GILLVTAS 287 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd------G~lLATaS 287 (779)
.++++..||.|+|||+. +.++..+.+|...|.+++|+|. +.+|++++
T Consensus 121 --------------------------~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 121 --------------------------MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp --------------------------EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred --------------------------EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 12345678999999997 4678899999999999999995 55999999
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.||+ |++||+... .....+ .++ ...|.+++|+||+++||+++.||+|+|||+........+..
T Consensus 174 ~d~~-i~~wd~~~~--------------~~~~~~-~~h-~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 174 NDKM-VKAWNLNQF--------------QIEADF-IGH-NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp TTSC-EEEEETTTT--------------EEEEEE-CCC-CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred CCCE-EEEEECCcc--------------hhheee-cCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 9998 899999864 333344 343 34599999999999999999999999999987655545543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=177.52 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=84.2
Q ss_pred cccCCCCeEEEEECCC----CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVS----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s----~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||.|+|||+.. .+++..+.+|...|.+|+|+|+|.+||||+.||+ |+|||+... ....
T Consensus 123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~------------~~~~ 189 (330)
T 2hes_X 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYDD------------DWEC 189 (330)
T ss_dssp EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEETT------------EEEE
T ss_pred EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCC------------CeeE
Confidence 3456789999999943 3577889999999999999999999999999998 899998653 1233
Q ss_pred EEEeecCCCcccEEEEEEcCC--CCEEEEEeCCCeEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD--g~~LAtgS~DGTVhIwdl~~~ 359 (779)
+..+ .|+. ..|++++|+|+ +.+|++++.|++|+||++...
T Consensus 190 ~~~~-~~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 190 VAVL-NGHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEE-CCCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEc-cCCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 4444 4543 45999999999 789999999999999999653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=178.27 Aligned_cols=175 Identities=16% Similarity=0.243 Sum_probs=131.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC-------------------CEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecC
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS-------------------PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s-------------------~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
.+++||++.+|+.+..+.... .|.+|+|+ +++|++ +.++.|++||+.+++.+.++..|
T Consensus 85 ~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 164 (393)
T 1erj_A 85 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164 (393)
T ss_dssp SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence 579999999999998886422 38999996 566665 67899999999999998888766
Q ss_pred CcccCCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec
Q 004015 122 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 201 (779)
Q Consensus 122 p~~~~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l 201 (779)
... + ..+++.. ++.
T Consensus 165 ~~~---------------v----~~~~~~p---------------------------~~~-------------------- 178 (393)
T 1erj_A 165 EQD---------------I----YSLDYFP---------------------------SGD-------------------- 178 (393)
T ss_dssp SSC---------------E----EEEEECT---------------------------TSS--------------------
T ss_pred CCC---------------E----EEEEEcC---------------------------CCC--------------------
Confidence 321 1 0122220 111
Q ss_pred CCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CC
Q 004015 202 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SG 280 (779)
Q Consensus 202 Gd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG 280 (779)
.++++..||.|+|||+.+++++..+. |...|.+++|+| +|
T Consensus 179 --------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 179 --------------------------------------KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp --------------------------------------EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred --------------------------------------EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 12334568999999999998887776 567899999999 99
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee------cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~------rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
++||+++.||+ |+|||+..+ ..+..+. .++ ...|.+++|+||+++|++++.||+|+||
T Consensus 220 ~~l~~~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 220 KYIAAGSLDRA-VRVWDSETG--------------FLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp CEEEEEETTSC-EEEEETTTC--------------CEEEEEC------CCC-SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CEEEEEcCCCc-EEEEECCCC--------------cEEEeecccccCCCCC-CCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999998 899999865 2222221 232 3459999999999999999999999999
Q ss_pred ecCCC
Q 004015 355 AINPL 359 (779)
Q Consensus 355 dl~~~ 359 (779)
|+...
T Consensus 284 d~~~~ 288 (393)
T 1erj_A 284 NLQNA 288 (393)
T ss_dssp EC---
T ss_pred ECCCC
Confidence 99764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-18 Score=181.59 Aligned_cols=186 Identities=11% Similarity=0.132 Sum_probs=139.4
Q ss_pred CEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL-kf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+..+ .+...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|... ..
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~------------v~- 185 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT------------VT- 185 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC------------EE-
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc------------EE-
Confidence 67999999999998886 467899999996 556655 67899999999999988888765321 11
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.. ++.
T Consensus 186 ------~~~~~~---------------------------~~~-------------------------------------- 194 (420)
T 3vl1_A 186 ------DIAIID---------------------------RGR-------------------------------------- 194 (420)
T ss_dssp ------EEEEET---------------------------TTT--------------------------------------
T ss_pred ------EEEEcC---------------------------CCC--------------------------------------
Confidence 122221 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC---C---------------------CCeEEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---K---------------------SPISALC 275 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH---t---------------------~~IsaLa 275 (779)
.++.+..+|.|+|||+.+++++..+..| . .+|.+++
T Consensus 195 --------------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 195 --------------------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred --------------------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1223456789999999999999988853 3 4444455
Q ss_pred EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 004015 276 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 354 (779)
Q Consensus 276 FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIw 354 (779)
|+|+|++|++++.||+ |+|||+..+ ..+..+..++ ...|.+++|+|+++ +|++++.||+|+||
T Consensus 255 ~s~~~~~l~~~~~dg~-i~i~d~~~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGV-ITVHNVFSK--------------EQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp SSCTTEEEEEEETTSC-EEEEETTTC--------------CEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCC--------------ceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 6899999999999998 899999875 3444554433 34699999999999 99999999999999
Q ss_pred ecCCCCC-ceeeccCC
Q 004015 355 AINPLGG-SVNFQPTD 369 (779)
Q Consensus 355 dl~~~gg-~~~~~~H~ 369 (779)
|+..... ...+..|.
T Consensus 319 d~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 319 DLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTCTTSCSEEEEEST
T ss_pred EcCCCcCchhhhhccC
Confidence 9988755 44566643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=184.24 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=149.1
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+. .+..+. +...|.+++|+ +++|++ +.++.|++||. +++.+.++..|... ..
T Consensus 324 d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~------------v~ 389 (577)
T 2ymu_A 324 DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS------------VR 389 (577)
T ss_dssp TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC------------EE
T ss_pred CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC------------eE
Confidence 367999998655 455555 47889999996 566666 56789999995 67788888776421 23
Q ss_pred ceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.++++| ++||.++.+ +.+|+. .+..+.. + .++.. .+.. -
T Consensus 390 ~~~~s~dg~~l~~~~~d~~v~~~~~-------------------~~~~~~~------------~--~~~~~--~v~~--~ 432 (577)
T 2ymu_A 390 GVAFSPDGQTIASASDDKTVKLWNR-------------------NGQLLQT------------L--TGHSS--SVWG--V 432 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-------------------TCCEEEE------------E--ECCSS--CEEE--E
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC-------------------CCCEEEE------------e--cCCCC--CeEE--E
Confidence 355554 677766432 222221 0010000 0 00000 0000 0
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
...|++ ..++.+..+|.|++||+ +++.+..+.+|..+|.+|+|+|||++||+++.||+ |+
T Consensus 433 ~~s~d~------------------~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~ 492 (577)
T 2ymu_A 433 AFSPDD------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 492 (577)
T ss_dssp EECTTS------------------SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EE
T ss_pred EECCCC------------------CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EE
Confidence 001111 13556678999999996 56788899999999999999999999999999987 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
|||.. + ..+..+ .++ ...|.+|+||||+++||+++.||+|+|||+ +......+.+|...+.
T Consensus 493 iw~~~-~--------------~~~~~~-~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~ 553 (577)
T 2ymu_A 493 LWNRN-G--------------QLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 553 (577)
T ss_dssp EEETT-S--------------CEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEE
T ss_pred EEcCC-C--------------CEEEEE-eCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEE
Confidence 99953 2 233444 343 345999999999999999999999999996 4445567788865443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=187.84 Aligned_cols=168 Identities=19% Similarity=0.311 Sum_probs=129.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||. +++.++++.. ...|.+|+|+ +++|++ +.+++|++||+ +.+++.++..|...
T Consensus 406 d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~-------------- 469 (577)
T 2ymu_A 406 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS-------------- 469 (577)
T ss_dssp TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC--------------
T ss_pred CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC--------------
Confidence 478999995 6788888874 7889999996 556665 67889999996 56777777665321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. +|.+
T Consensus 470 -v----~~~~~sp---------------------------d~~~------------------------------------ 481 (577)
T 2ymu_A 470 -V----RGVAFSP---------------------------DGQT------------------------------------ 481 (577)
T ss_dssp -E----EEEEECT---------------------------TSCE------------------------------------
T ss_pred -E----EEEEEcC---------------------------CCCE------------------------------------
Confidence 1 1123321 1211
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|+|||. +++++..+.+|..+|++|+|+|||++||+++.||+ |+|||.
T Consensus 482 ----------------------las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~ 537 (577)
T 2ymu_A 482 ----------------------IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR 537 (577)
T ss_dssp ----------------------EEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT
T ss_pred ----------------------EEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC
Confidence 223356789999995 67889999999999999999999999999999987 999995
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
. + ..+..+ +|+. ..|++++|+|||++|++++.|++|+|||
T Consensus 538 ~-~--------------~~~~~~-~~h~-~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 N-G--------------QLLQTL-TGHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-S--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-C--------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 3 2 234454 4543 4699999999999999999999999997
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=170.43 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=140.6
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+++++++.+++. ...|..+.|+ +++|++ +.+++|++||+.+++++.++..|..
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 150 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------- 150 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS---------------
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC---------------
Confidence 37899999999999999985 6789999996 455554 7789999999999999888865421
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++. .+++.. ++.
T Consensus 151 ~v~----~~~~~~---------------------------~~~------------------------------------- 162 (312)
T 4ery_A 151 PVS----AVHFNR---------------------------DGS------------------------------------- 162 (312)
T ss_dssp CEE----EEEECT---------------------------TSS-------------------------------------
T ss_pred cEE----EEEEcC---------------------------CCC-------------------------------------
Confidence 110 122220 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|++|++++.||. |+|||
T Consensus 163 ---------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd 220 (312)
T 4ery_A 163 ---------------------LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWD 220 (312)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEE
T ss_pred ---------------------EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEE
Confidence 12234567899999999999888775 66778999999999999999999987 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCccc--EEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~--I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+..+ ..+..+ .++.... +....+.+++++|++++.||+|+||++........+++|.+.
T Consensus 221 ~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 221 YSKG--------------KCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp TTTT--------------EEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCC--------------cEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 9875 333343 2322211 333334578999999999999999999987766677888544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=175.40 Aligned_cols=234 Identities=12% Similarity=0.117 Sum_probs=143.8
Q ss_pred CEEEEEECC--CCcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~--Tge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+. +++.++.+. +...|.+|+|+ +++|++ +.++.|++||+.+.+ .+..+..+..
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------- 102 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA---------- 102 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----------
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc----------
Confidence 569999998 667777776 47899999995 566665 678999999999987 5566654432
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
....+++.| ++|+.++.+ +.+|+.. ..+... -....+...
T Consensus 103 --~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-----------------------------~~~~~~-~~~~~~~~~-- 148 (379)
T 3jrp_A 103 --SVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-----------------------------ENGTTS-PIIIDAHAI-- 148 (379)
T ss_dssp --CEEEEEECCGGGCSEEEEEETTSEEEEEECC-----------------------------TTSCCC-EEEEECCTT--
T ss_pred --ceEEEEeCCCCCCCEEEEecCCCcEEEEecC-----------------------------CCCcee-eEEecCCCC--
Confidence 122344443 355555432 2223211 000000 000000000
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCC---C
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPS---G 280 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPd---G 280 (779)
.+... ...|............ .+ ...++.+..+|.|+|||+.++. ++..+.+|..+|.+|+|+|+ |
T Consensus 149 ~v~~~--~~~~~~~~~~~~~~~~--~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 149 GVNSA--SWAPATIEEDGEHNGT--KE---SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp CEEEE--EECCCC------------CT---TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ceEEE--EEcCccccccccccCC--CC---CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 00000 0001000000000000 00 1245667789999999998754 56788899999999999999 9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++||+++.||+ |+|||+..+.. ......+........|.+++|+||+++|++++.||+|+||++...+
T Consensus 222 ~~l~s~~~dg~-i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVSQDRT-CIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEETTSC-EEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEeCCCE-EEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999998 89999986410 0111122222233459999999999999999999999999998654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=185.40 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=88.0
Q ss_pred cccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc---cCCC-C
Q 004015 242 PDADNVGMVIVRDIVSKN---VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA---CDAG-T 313 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~---~v~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~---~~~~-~ 313 (779)
+.+..+|.|+|||+.+++ ++..+.. |...|.+|+|+|+|++||+++.||+ |+|||+.......... .+.. .
T Consensus 116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~ 194 (377)
T 3dwl_C 116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLP 194 (377)
T ss_dssp EEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred EEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEEEecccCCCccccccccccc
Confidence 345568899999999887 4788887 9999999999999999999999998 8999986421000000 0000 0
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC----ceeeccCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG----SVNFQPTDA 370 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg----~~~~~~H~~ 370 (779)
....+..+ + +...|.+++|+||+++||+++.||+|+|||+..... ...+..|..
T Consensus 195 ~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 195 FNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp EEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred hhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 12233333 3 234599999999999999999999999999998766 455666644
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-17 Score=165.25 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=90.3
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCC----CEEEEEeCCCCEEEEEeCCCCCCCCCC------
Q 004015 240 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSS------ 307 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG----~lLATaS~DGt~I~Vwdi~~~~~g~~s------ 307 (779)
.++.+..+|.+.+|+...+.. +..+.+|..+|++|+|+|+| ++|++++.||+ |+|||+.........
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 262 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTN 262 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccc
Confidence 355667888998888887765 78888999999999999999 89999999998 899998763100000
Q ss_pred -------------ccC-------------CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 308 -------------ACD-------------AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 308 -------------~~~-------------~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+ .......+..+ +++ ...|.+++|+||+++||+++.||+|+||++...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ----------------------------CCSEEEEEEEEE-CTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 000 00011233333 343 34599999999999999999999999999988765
Q ss_pred ceee
Q 004015 362 SVNF 365 (779)
Q Consensus 362 ~~~~ 365 (779)
...+
T Consensus 341 ~~~~ 344 (351)
T 3f3f_A 341 FKCM 344 (351)
T ss_dssp EEEE
T ss_pred hhhe
Confidence 5444
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-17 Score=175.35 Aligned_cols=227 Identities=14% Similarity=0.165 Sum_probs=153.8
Q ss_pred CCEEEEEECCCCcEEEEEeC--CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf--~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|+|||+.+++.+..+.. ...|.+|+|+ +++|++ +.++.|++||+.+++.+.++..|... .
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------v 179 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------V 179 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------E
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------e
Confidence 47899999999999998886 6789999996 566666 56899999999999999999766421 2
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
..+++.+++|+.++.+- .+..|-....+....- ..++.+ .+... ..
T Consensus 180 ~~~~~~~~~l~~~~~dg---------------------------~i~i~d~~~~~~~~~~--~~~~~~--~v~~~--~~- 225 (401)
T 4aez_A 180 GCLSWNRHVLSSGSRSG---------------------------AIHHHDVRIANHQIGT--LQGHSS--EVCGL--AW- 225 (401)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEEE--EECCSS--CEEEE--EE-
T ss_pred EEEEECCCEEEEEcCCC---------------------------CEEEEecccCcceeeE--EcCCCC--CeeEE--EE-
Confidence 33555666666664321 1111111100000000 000000 00000 00
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC-CEEEEEe--CCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS--VQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG-~lLATaS--~DGt~I~ 294 (779)
++. ...++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+| .+|++++ .||+ |+
T Consensus 226 ----------~~~-------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~ 287 (401)
T 4aez_A 226 ----------RSD-------GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IH 287 (401)
T ss_dssp ----------CTT-------SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EE
T ss_pred ----------cCC-------CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EE
Confidence 010 1135667789999999999999999999999999999999976 5777765 6886 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCCCcee--eccCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVN--FQPTDA 370 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS--~DGTVhIwdl~~~gg~~~--~~~H~~ 370 (779)
+||+..+ ..+..+.. ...|.+++|+||+++|++++ .||+|+||++........ +.+|..
T Consensus 288 i~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~ 350 (401)
T 4aez_A 288 FWNAATG--------------ARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350 (401)
T ss_dssp EEETTTC--------------CEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS
T ss_pred EEECCCC--------------CEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC
Confidence 9999875 33444432 24599999999999999954 899999999987433332 456643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=179.80 Aligned_cols=235 Identities=13% Similarity=0.179 Sum_probs=152.9
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.++|++||+.+++.++++. +...|.+++|+ +.+++++.+++|++||+.+++++.++..|... ...
T Consensus 141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~------------v~~ 208 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST------------VRC 208 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEE
T ss_pred CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCc------------cEE
Confidence 3779999999999999998 57899999996 33445578999999999999999999776432 122
Q ss_pred eeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 140 LAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 140 iAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
+++.+ .+|+.++.+ +.+|+........... ............+. . .++
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~-~------------------~~~ 262 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG-------EEHDYPLVFHTPEE-N------------------PYF 262 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------------CCSSEEESCGGG-C------------------TTE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc-------ccCCcceEeeccCC-C------------------eEE
Confidence 33331 556655432 3344321100000000 00000000000000 0 000
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
..........+....+. ...++.+..+|.|++||+.+++++..+.+|...|.+++|+|+|++|++++.||+ |
T Consensus 263 ~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i 334 (464)
T 3v7d_B 263 VGVLRGHMASVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-I 334 (464)
T ss_dssp EEEECCCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-E
T ss_pred EEEccCccceEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-E
Confidence 00000000000000000 124567788999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
+|||+.++ ..+..+. ++ ...|.+++|+ +++|++++.||+|+|||+.....
T Consensus 335 ~vwd~~~~--------------~~~~~~~-~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 335 RIWDLENG--------------ELMYTLQ-GH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEETTTT--------------EEEEEEC-CC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCC--------------cEEEEEe-CC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 99999875 4455553 33 3459999998 58999999999999999987543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-17 Score=172.71 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=85.4
Q ss_pred ccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 243 DADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 243 s~~~dG~V~VwDl~s-------~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
++..||.|+|||+.. .+++..+.+|..+|.+|+|+|+|++||||+.||+ |+|||+... + ...
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~-v~iwd~~~~--~--------~~~ 143 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS-VWIWETDES--G--------EEY 143 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC-EEEEECCTT--C--------CCC
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE-EEEEeccCC--C--------CCe
Confidence 445689999999853 4577889999999999999999999999999998 899999542 0 012
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC--CCceeeccCCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL--GGSVNFQPTDAN 371 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~--gg~~~~~~H~~~ 371 (779)
..+..+ .++ ...|.+++|+||+++||+++.|++|+||++... .....+.+|...
T Consensus 144 ~~~~~~-~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 144 ECISVL-QEH-SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp EEEEEE-CCC-SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EEEEEe-ccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 333444 343 345999999999999999999999999998654 234456777543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=174.67 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=153.9
Q ss_pred CEEEEEECCCCc---EEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCC----CcEEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLRSQS---YVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT----LEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~Tge---~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T----~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+.+++ .+..+.+...|.+|+|+ +++|++ +.++.|++||+.+ .+.+.++..|...
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~--------- 115 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS--------- 115 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC---------
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc---------
Confidence 679999999986 56667778899999995 556665 5788999999998 4577777665321
Q ss_pred cccccceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccc
Q 004015 134 GIGYGPLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 208 (779)
Q Consensus 134 ~~~~~piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ 208 (779)
...+++.| ++|+.++.+ +.+|+....... .... .. ..+..
T Consensus 116 ---v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------------~~~~---------~~----~~~~~----- 160 (416)
T 2pm9_A 116 ---VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES--------------PSNY---------TP----LTPGQ----- 160 (416)
T ss_dssp ---CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC--------------TTTC---------CC----BCCCC-----
T ss_pred ---eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc--------------cccc---------cc----ccccc-----
Confidence 22344443 456655432 223321100000 0000 00 00000
Q ss_pred cccccccccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCCC
Q 004015 209 LSQYCSEFLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSG 280 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPdG 280 (779)
.......+... ++.. ...++.+..+|.|+|||+.+++.+..+..| ..+|.+++|+|+|
T Consensus 161 --------~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 161 --------SMSSVDEVISLAWNQSL------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp --------SCCSSCCCCEEEECSSC------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred --------ccCCCCCeeEEEeCCCC------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence 00000000000 1100 013566778999999999999999999877 7899999999998
Q ss_pred -CEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 004015 281 -ILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 281 -~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DGTVhIwd 355 (779)
.+|++++.|| + |+|||+.... ..+..+..++ ...|.+++|+| |+++|++++.||+|+|||
T Consensus 227 ~~~l~~~~~d~~~~~-i~~~d~~~~~-------------~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 227 STRVATATGSDNDPS-ILIWDLRNAN-------------TPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp TTEEEEEECCSSSCC-CCEEETTSTT-------------SCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred CCEEEEEECCCCCce-EEEEeCCCCC-------------CCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 6999999998 7 8999998640 1111221132 34599999999 999999999999999999
Q ss_pred cCCCCCceeeccCCCCC
Q 004015 356 INPLGGSVNFQPTDANF 372 (779)
Q Consensus 356 l~~~gg~~~~~~H~~~~ 372 (779)
+........+..|...+
T Consensus 292 ~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWC 308 (416)
T ss_dssp SSSCCEEEEEECSSSCC
T ss_pred CCCCccceeecCCCCce
Confidence 99887777778886443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=176.57 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=147.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCC-C---------------EEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRS-P---------------IYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s-~---------------V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
.++|++||+.+++.+..+.... . |.++.|+ +.+++.+.++.|++||+.+.+.+..+..+...
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 249 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP 249 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence 3679999999999999998743 3 8888885 55566678899999999999988888765321
Q ss_pred cCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeee
Q 004015 125 MGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 200 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~ 200 (779)
...+++.+ ++|+.++.+ +.+|+.. ..+.+. -+
T Consensus 250 ------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------------------------~~~~~~-~~-- 285 (425)
T 1r5m_A 250 ------------ISVLEFNDTNKLLLSASDDGTLRIWHGG-----------------------------NGNSQN-CF-- 285 (425)
T ss_dssp ------------EEEEEEETTTTEEEEEETTSCEEEECSS-----------------------------SBSCSE-EE--
T ss_pred ------------eEEEEECCCCCEEEEEcCCCEEEEEECC-----------------------------CCccce-Ee--
Confidence 22344443 556655422 2222210 000000 00
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG 280 (779)
.+.. ..+...... ..+ .++.+..+|.|+|||+.+++++..+..|..+|.+++|+|+|
T Consensus 286 ~~~~-----------------~~i~~~~~~--~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 286 YGHS-----------------QSIVSASWV--GDD----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp CCCS-----------------SCEEEEEEE--TTT----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred cCCC-----------------ccEEEEEEC--CCC----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 0000 000000000 001 34566788999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC------CceeEEEEeecCCCcc-cEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAG------TSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~------~s~~~l~~l~rG~t~a-~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
++||+++.||. |+|||+.............. .....+..+ +++... .|.+++|+||+++||+++.||+|+|
T Consensus 343 ~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 343 QKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp SEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 99999999998 89999976410000000000 000134444 343333 6999999999999999999999999
Q ss_pred EecC
Q 004015 354 FAIN 357 (779)
Q Consensus 354 wdl~ 357 (779)
|++.
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=182.24 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=93.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+++..+|.|+|||+.+++++..|++|...|.+|+|+|++. +|++++.||+ |+|||+..+. .+..
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-v~~wd~~~~~--------------~~~~ 219 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRKPK--------------PATR 219 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC-EEECCTTSSS--------------CBCB
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc-eEEEECCCCc--------------eeee
Confidence 3456789999999999999999999999999999999985 8999999998 8999998751 1111
Q ss_pred eecCCCcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 321 LQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
+........|.+++|+|+ +++||+|+.|++|+|||+........+..|...+
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence 111222345899999998 5689999999999999999887777788775443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-17 Score=176.44 Aligned_cols=211 Identities=15% Similarity=0.220 Sum_probs=148.9
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|++||+.+++.+.++. +...|.++++++++|++ +.+++|++||+.+++++.++..|... ...++
T Consensus 153 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~------------v~~l~ 220 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA------------VLHLR 220 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC------------EEEEE
T ss_pred CeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc------------EEEEE
Confidence 679999999999999997 47899999998777776 67899999999999999999776321 22345
Q ss_pred ecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 142 VGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 142 lgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+.+..|+.++.+ +.+|+.. ..+.+..-....++..
T Consensus 221 ~~~~~l~s~s~dg~i~vwd~~-----------------------------~~~~~~~~~~~~~~~~-------------- 257 (435)
T 1p22_A 221 FNNGMMVTCSKDRSIAVWDMA-----------------------------SPTDITLRRVLVGHRA-------------- 257 (435)
T ss_dssp CCTTEEEEEETTSCEEEEECS-----------------------------SSSCCEEEEEECCCSS--------------
T ss_pred EcCCEEEEeeCCCcEEEEeCC-----------------------------CCCCceeeeEecCCCC--------------
Confidence 555566655432 2222210 0000000000000000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.+...... ...++.+..+|.|+|||+.+++++..+.+|...|.+++| ++.+|++|+.||+ |+|||+.
T Consensus 258 ---~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~ 324 (435)
T 1p22_A 258 ---AVNVVDFD-------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIE 324 (435)
T ss_dssp ---CEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETT
T ss_pred ---cEEEEEeC-------CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECC
Confidence 00000000 123566778999999999999999999999999999999 5789999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++ ..+..+. ++ ...|.+++| |+++|++|+.||+|+|||+....
T Consensus 325 ~~--------------~~~~~~~-~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 CG--------------ACLRVLE-GH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TC--------------CEEEEEC-CC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CC--------------CEEEEEe-CC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 75 3444553 33 345999999 89999999999999999996543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-17 Score=171.29 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=93.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEEcCCCCEEEEEeCC---CCEEEEEeCCCCCCCCCCccC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRA---H---KSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~a---H---t~~IsaLaFSPdG~lLATaS~D---Gt~I~Vwdi~~~~~g~~s~~~ 310 (779)
.++.+..+|.|+|||+.+++++..+.. | ..+|.+++|+|+|++|++++.| |. |+|||+..+
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~--------- 268 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFG--------- 268 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTC---------
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCC---------
Confidence 356677899999999999999999999 9 9999999999999999999999 86 999999865
Q ss_pred CCCceeEEEEeecCC-----------CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 311 AGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~-----------t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+..+.... +...|.+++|+||+++|++++.||+|+||++........+.
T Consensus 269 -----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 269 -----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred -----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 2334442200 23459999999999999999999999999998876666666
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=164.03 Aligned_cols=107 Identities=14% Similarity=0.310 Sum_probs=90.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..+|.|++||+.+++.+..+..|...|.+++|+|+|++|++++.||+ |++||+..+ ..+..+.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~- 222 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG--------------RQLQQHD- 222 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEE-
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCC--------------ceEeeec-
Confidence 346789999999999999999999999999999999999999999987 899999875 3333332
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
....|.+++|+||+++|++++.|+++++|++... ....+..|.
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~ 265 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHE 265 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCS
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-CeEEEcCCc
Confidence 2345999999999999999999999999999875 344555554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-17 Score=187.20 Aligned_cols=225 Identities=15% Similarity=0.222 Sum_probs=150.6
Q ss_pred CCEEEEEECCCC-----cEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQ-----SYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tg-----e~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.++ ...+.+. +...|.+|+|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--------- 474 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD--------- 474 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC---------
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC---------
Confidence 378999999763 3455565 46789999996 566655 67999999999999999999887432
Q ss_pred cccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+..++++| ++|+.++.+ +.+|+.... .. ..+..+ ..++.. .+
T Consensus 475 ---v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-------------------~~--------~~~~~~--~~~h~~--~v 520 (694)
T 3dm0_A 475 ---VLSVAFSLDNRQIVSASRDRTIKLWNTLGE-------------------CK--------YTISEG--GEGHRD--WV 520 (694)
T ss_dssp ---EEEEEECTTSSCEEEEETTSCEEEECTTSC-------------------EE--------EEECSS--TTSCSS--CE
T ss_pred ---EEEEEEeCCCCEEEEEeCCCEEEEEECCCC-------------------cc--------eeeccC--CCCCCC--cE
Confidence 22344444 556655432 233321000 00 000000 000000 00
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
. +-...|++ ....+++++.||.|+|||+.+.+++..+.+|.+.|++|+|+|+|++|+|++.|
T Consensus 521 ~--~~~~~~~~----------------~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 521 S--CVRFSPNT----------------LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp E--EEEECSCS----------------SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred E--EEEEeCCC----------------CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 0 00000110 00135667889999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|+ |+|||+..+ ..++.+.. ...|.+++||||+.+|++++ |+.|+|||+........+..
T Consensus 583 g~-i~iwd~~~~--------------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 583 GV-VLLWDLAEG--------------KKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp SB-CEEEETTTT--------------EEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECC
T ss_pred Ce-EEEEECCCC--------------ceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcc
Confidence 98 899999875 44555432 24599999999999988776 56699999987654444443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=180.79 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=96.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
++.+..+|.|+|||+.+++++..+.+ |...|++|+|+|+|++|++|+.||+ |+|||+..+ ..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFN--------------VLI 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCc--------------cEE
Confidence 34566789999999999999999998 8999999999999999999999998 899999875 444
Q ss_pred EEeecCCCcccEEEEEE----cCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCC
Q 004015 319 YRLQRGLTNAVIQDISF----SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaF----SpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~ 372 (779)
..+..++ ...|.+++| +||+++|++++.||+|+|||+........+.+|...+
T Consensus 250 ~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 250 RSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp EEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred EEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 5553232 246999955 5678999999999999999999887777888875433
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=177.37 Aligned_cols=187 Identities=9% Similarity=0.023 Sum_probs=125.7
Q ss_pred CCEEEEEEC-CCCcEEEEEeC-CCCEEEEEEc-----CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcc
Q 004015 63 PTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS-----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 63 ~~tVrIWDL-~Tge~V~tLkf-~s~V~sV~~s-----~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~ 134 (779)
..+|++|++ .+|+.+.++.. ...+..++|+ +.+||. +.|++|+|||+.|+++++++.++.....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-------- 227 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-------- 227 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--------
Confidence 478999999 55888888765 4456555554 366665 7899999999999999999986532100
Q ss_pred ccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 135 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 135 ~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.. ..+||.. +|.++.....+.
T Consensus 228 -~v-------~~vafSp---------------------------dG~~lvs~s~~~------------------------ 248 (356)
T 2w18_A 228 -SV-------CHKAYSE---------------------------MGLLFIVLSHPC------------------------ 248 (356)
T ss_dssp -CC-------EEEEEEE---------------------------TTEEEEEEC---------------------------
T ss_pred -ee-------EEEEECC---------------------------CCCEEEEeccCC------------------------
Confidence 01 1223331 222211100000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-----ccCCCCeEEEEEcCCCCEEEEEeCC
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RAHKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-----~aHt~~IsaLaFSPdG~lLATaS~D 289 (779)
+ ...++++..|++|++||..+++.+..+ .+|...+.+..|+ |.++|+++.|
T Consensus 249 --------------------~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~D 304 (356)
T 2w18_A 249 --------------------A--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTS 304 (356)
T ss_dssp -------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETT
T ss_pred --------------------C--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCC
Confidence 0 002345677899999999999988766 3787776555554 9999999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
|+ |+|||+.++ +.+.+| .|+....+..++|||||++||+|+.|+||+|||+
T Consensus 305 gT-IkIWDl~tG--------------k~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 305 GT-IAIWDLLLG--------------QCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SC-EEEEETTTC--------------SEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred Cc-EEEEECCCC--------------cEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 98 999999876 455566 3544434556999999999999999999999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=169.78 Aligned_cols=134 Identities=12% Similarity=0.239 Sum_probs=103.6
Q ss_pred CEEEEEECCCCcEEEEEe------CCCCEEEEEEcC------cEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCC
Q 004015 64 TVVHFYSLRSQSYVHMLK------FRSPIYSVRCSS------RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 130 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s~------rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s 130 (779)
+.|+|||+.+++.++.++ +...|.+++|+. ++|++ +.++.|++||+.+++.+.++..|...
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------ 117 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------ 117 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------
Confidence 579999999999888886 346799999963 35554 67889999999999999888765321
Q ss_pred CCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 131 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 131 ~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
+ ..+++.. . ++.
T Consensus 118 ---------i----~~~~~~~-------------~-------------~~~----------------------------- 129 (366)
T 3k26_A 118 ---------I----NELKFHP-------------R-------------DPN----------------------------- 129 (366)
T ss_dssp ---------E----EEEEECS-------------S-------------CTT-----------------------------
T ss_pred ---------E----EEEEECC-------------C-------------CCC-----------------------------
Confidence 1 1122220 0 111
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCCCCEEEEEe
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTAS 287 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPdG~lLATaS 287 (779)
.++.+..+|.|+|||+.+++.+..+ .+|...|.+|+|+|+|.+|++++
T Consensus 130 -----------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 130 -----------------------------LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -----------------------------EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 1233456889999999999999998 78999999999999999999999
Q ss_pred CCCCEEEEEeCCCC
Q 004015 288 VQGHNINIFKIIPG 301 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~ 301 (779)
.||+ |+|||+..+
T Consensus 181 ~dg~-i~i~d~~~~ 193 (366)
T 3k26_A 181 MDHS-LKLWRINSK 193 (366)
T ss_dssp TTSC-EEEEESCSH
T ss_pred CCCC-EEEEECCCC
Confidence 9998 899998753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-16 Score=161.76 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=130.4
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.+.|++||+++++.+..++. ...|.+++|+ +++|++ +.++.|++||+.+++.+..+... .
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~--------------- 225 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S--------------- 225 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S---------------
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-C---------------
Confidence 36799999999999999974 7889999995 556655 67899999999999887776421 0
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++ ..+++.. ++..
T Consensus 226 ~v----~~~~~s~---------------------------~~~~------------------------------------ 238 (337)
T 1gxr_A 226 QI----FSLGYCP---------------------------TGEW------------------------------------ 238 (337)
T ss_dssp CE----EEEEECT---------------------------TSSE------------------------------------
T ss_pred ce----EEEEECC---------------------------CCCE------------------------------------
Confidence 00 0122210 1111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
++.+..+|.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.||. |++||+
T Consensus 239 ----------------------l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~ 294 (337)
T 1gxr_A 239 ----------------------LAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRT 294 (337)
T ss_dssp ----------------------EEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEET
T ss_pred ----------------------EEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEEC
Confidence 12234568899999998875 467899999999999999999999999987 899999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..+ ..+..+. ....|.+++|+||+++|++++.||+|+||++
T Consensus 295 ~~~--------------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYG--------------ASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTC--------------CEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCC--------------eEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 875 2222221 2345999999999999999999999999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-16 Score=169.94 Aligned_cols=217 Identities=11% Similarity=0.117 Sum_probs=144.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCC-CCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~-T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++|+|||+.+++.++++.. ...|.+++|++++|++ +.++.|++||+. ..+.+..+..|... ...+
T Consensus 156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------v~~~ 223 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE------------VCGL 223 (401)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC------------EEEE
T ss_pred CeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCC------------eeEE
Confidence 6799999999999999964 7899999999777766 678999999999 45667777766321 2234
Q ss_pred eecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeec-CCcccccccccccc
Q 004015 141 AVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL-GDLGYKKLSQYCSE 215 (779)
Q Consensus 141 Algp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~l-Gd~~~~~ls~y~~~ 215 (779)
++.| ++||.++.+ +.+|+.. ..+.+ ..+ +... .+... .
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~-----------------------------~~~~~----~~~~~~~~--~v~~~--~ 266 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDAR-----------------------------SSIPK----FTKTNHNA--AVKAV--A 266 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT-----------------------------CSSEE----EEECCCSS--CCCEE--E
T ss_pred EEcCCCCEEEEEeCCCeEEEccCC-----------------------------CCCcc----EEecCCcc--eEEEE--E
Confidence 4443 566666432 2223211 00000 000 0000 00000 0
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccc--cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe--CCCC
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPD--ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS--VQGH 291 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s--~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS--~DGt 291 (779)
..|++ ...++. +..+|.|++||+.+++++..+. |...|.+++|+|+|++|++++ .||.
T Consensus 267 ~~p~~-----------------~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 267 WCPWQ-----------------SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp ECTTS-----------------TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred ECCCC-----------------CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence 00110 001233 2368999999999999998886 667899999999999999965 7886
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
|+|||+..+ ....+..+. ++ ...|.+++|+||+++|++++.||+|+||++......
T Consensus 329 -i~v~~~~~~------------~~~~~~~~~-~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 329 -LSIWSYSSS------------GLTKQVDIP-AH-DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp -EEEEEEETT------------EEEEEEEEE-CC-SSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred -EEEEecCCc------------cceeEEEec-CC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999998764 223334442 32 345999999999999999999999999999876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-17 Score=170.26 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=135.2
Q ss_pred CEEEEEECCCCcEEEEEe--------------CCCCEEEEEEcC---cEEE-EEeCCeEEEEeCCCCcEEEEEecCCccc
Q 004015 64 TVVHFYSLRSQSYVHMLK--------------FRSPIYSVRCSS---RVVA-ICQAAQVHCFDAATLEIEYAILTNPIVM 125 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk--------------f~s~V~sV~~s~---rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~ 125 (779)
++|+|||+.+++....+. +...|.+|+|+. ++|+ .+.++.|++||+.+++.+..+.....
T Consensus 66 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-- 143 (408)
T 4a11_B 66 GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-- 143 (408)
T ss_dssp SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC--
T ss_pred CeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc--
Confidence 669999999988777665 678999999953 3454 56799999999999998877753110
Q ss_pred CCCCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcc
Q 004015 126 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG 205 (779)
Q Consensus 126 ~~p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~ 205 (779)
... +++.. . ..++.
T Consensus 144 -----------~~~-------~~~~~-------------~-----------~~~~~------------------------ 157 (408)
T 4a11_B 144 -----------VYS-------HHMSP-------------V-----------STKHC------------------------ 157 (408)
T ss_dssp -----------EEE-------EEECS-------------S-----------CSSCC------------------------
T ss_pred -----------eee-------eEeec-------------C-----------CCCCc------------------------
Confidence 000 11110 0 00010
Q ss_pred ccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEE
Q 004015 206 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLV 284 (779)
Q Consensus 206 ~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLA 284 (779)
.++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|+ +|+
T Consensus 158 ----------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~ 203 (408)
T 4a11_B 158 ----------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203 (408)
T ss_dssp ----------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEE
T ss_pred ----------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEE
Confidence 123345678999999999999999999999999999999999 699
Q ss_pred EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee--------------cCCCcccEEEEEEcCCCCEEEEEeCCCe
Q 004015 285 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--------------RGLTNAVIQDISFSDDSNWIMISSSRGT 350 (779)
Q Consensus 285 TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--------------rG~t~a~I~sIaFSpDg~~LAtgS~DGT 350 (779)
+++.||+ |+|||+..... .+..+. .+ ....|.+++|+||+++|++++.||+
T Consensus 204 ~~~~dg~-i~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 204 TASADSR-VKLWDVRRASG-------------CLITLDQHNGKKSQAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEETTSC-EEEEETTCSSC-------------CSEECCTTTTCSCCCTTTSSCS-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEcCCCc-EEEEECCCCCc-------------ccccccccccccceeecccccc-ccCceeEEEEcCCCCEEEEecCCCe
Confidence 9999998 89999976410 011110 12 2345999999999999999999999
Q ss_pred EEEEecCCCCCcee
Q 004015 351 SHLFAINPLGGSVN 364 (779)
Q Consensus 351 VhIwdl~~~gg~~~ 364 (779)
|+||++........
T Consensus 269 i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 269 MRLWNSSNGENTLV 282 (408)
T ss_dssp EEEEETTTCCBCCC
T ss_pred EEEEECCCCcccee
Confidence 99999987654333
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=165.39 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=138.8
Q ss_pred CEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+++ .++++. +...|.+|+|+ +++|++ +.++.|++||+.+.+....+..... .
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~----------- 96 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI--N----------- 96 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC--S-----------
T ss_pred CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC--C-----------
Confidence 679999999998 888887 47899999996 566665 6788999999998876655532110 0
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.++ ..+++.. ++.
T Consensus 97 ~~v----~~~~~~~---------------------------~~~------------------------------------ 109 (372)
T 1k8k_C 97 RAA----RCVRWAP---------------------------NEK------------------------------------ 109 (372)
T ss_dssp SCE----EEEEECT---------------------------TSS------------------------------------
T ss_pred Cce----eEEEECC---------------------------CCC------------------------------------
Confidence 001 1122210 111
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc---EEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~---~v~~f-~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.++.+..+|.|++||+..+. ....+ .+|...|.+|+|+|+|++|++++.||. |
T Consensus 110 ----------------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i 166 (372)
T 1k8k_C 110 ----------------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-C 166 (372)
T ss_dssp ----------------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred ----------------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC-E
Confidence 12233467899999999876 23344 689999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCc---cCC-CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 294 NIFKIIPGILGTSSA---CDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~---~~~-~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+|||+.......... .+. ......+..+. + +...|.+++|+||+++|++++.||+|+|||+........+..|.
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEEcccccccccccccccccccchhhheEecC-C-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 999975321000000 000 00123344442 3 23459999999999999999999999999998877666777764
Q ss_pred C
Q 004015 370 A 370 (779)
Q Consensus 370 ~ 370 (779)
.
T Consensus 245 ~ 245 (372)
T 1k8k_C 245 L 245 (372)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=167.50 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=135.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc-----CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-----SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-----~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
.++|++||+.+++.+..+.+...+..+.+. ..+++ .+.++.|++||+.+++.+.++..|...
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------ 188 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE------------ 188 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC------------
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc------------
Confidence 378999999999999999999999999995 22555 467889999999999888888655211
Q ss_pred ccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 137 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.. .+++.. ++..
T Consensus 189 v~-------~~~~~~---------------------------~~~~---------------------------------- 200 (408)
T 4a11_B 189 IL-------AVSWSP---------------------------RYDY---------------------------------- 200 (408)
T ss_dssp EE-------EEEECS---------------------------SCTT----------------------------------
T ss_pred EE-------EEEECC---------------------------CCCc----------------------------------
Confidence 11 122220 1110
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc-EEEEe---------------ccCCCCeEEEEEcCCC
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQF---------------RAHKSPISALCFDPSG 280 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~-~v~~f---------------~aHt~~IsaLaFSPdG 280 (779)
.++.+..+|.|++||+++.. ++..+ .+|..+|.+++|+|+|
T Consensus 201 -----------------------ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 201 -----------------------ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp -----------------------EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred -----------------------EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 02234567889999998765 44444 6899999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCC-----c-----------cC--------CC---------CceeEEEEeecCCCc
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSS-----A-----------CD--------AG---------TSYVHLYRLQRGLTN 327 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s-----~-----------~~--------~~---------~s~~~l~~l~rG~t~ 327 (779)
++|++++.||. |+|||+..+..-... . .+ .. .....+..+ .++ .
T Consensus 258 ~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~-~ 334 (408)
T 4a11_B 258 LHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGH-Y 334 (408)
T ss_dssp SEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCC-S
T ss_pred CEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccC-C
Confidence 99999999998 899999865210000 0 00 00 011222333 232 3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCcee
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..|.+++|+||+++|++++.||+|+||++..+.....
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 4599999999999999999999999999988754433
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-16 Score=167.80 Aligned_cols=237 Identities=14% Similarity=0.158 Sum_probs=148.4
Q ss_pred CCEEEEEEC----CCCc------EEEEEeC-----------CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEE
Q 004015 63 PTVVHFYSL----RSQS------YVHMLKF-----------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 118 (779)
Q Consensus 63 ~~tVrIWDL----~Tge------~V~tLkf-----------~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl 118 (779)
.++|+|||+ .+++ ....+.. ...|.+|+|+ +++|++ +.++.|++|| .+++.+..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~ 145 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL 145 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec
Confidence 378999999 9999 5666665 3489999996 566665 5788999999 778888888
Q ss_pred ecCCcccCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccch
Q 004015 119 LTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 194 (779)
Q Consensus 119 ~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~L 194 (779)
..|... ...+++.| ++|+.++.+ +.+|+.. .+..+..+..
T Consensus 146 ~~~~~~------------v~~~~~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~------ 189 (425)
T 1r5m_A 146 NFHRAP------------IVSVKWNKDGTHIISMDVENVTILWNVI------------------SGTVMQHFEL------ 189 (425)
T ss_dssp CCCCSC------------EEEEEECTTSSEEEEEETTCCEEEEETT------------------TTEEEEEECC------
T ss_pred cCCCcc------------EEEEEECCCCCEEEEEecCCeEEEEECC------------------CCcEEEEeec------
Confidence 766321 22345544 556655432 2233210 0000000000
Q ss_pred hceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 004015 195 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 274 (779)
Q Consensus 195 a~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaL 274 (779)
.......+. .....+++.. +...... . .+.++.+..+|.|++||+.+++++..+.+|..+|.+|
T Consensus 190 -------~~~~~~~~~--~~~~~~~~~~-~~~~~~~--~----~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 190 -------KETGGSSIN--AENHSGDGSL-GVDVEWV--D----DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp -------C-----------------CCC-BSCCEEE--E----TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred -------cccCcccee--eccccCCcce-eeEEEEc--C----CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 000000000 0000000000 0000000 0 1234566788999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 275 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 275 aFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
+|+|+|++|++++.||. |+|||+... ..+..+ .++ ...|.+++|+||+ +|++++.||+|+||
T Consensus 254 ~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~-~~~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGT-LRIWHGGNG--------------NSQNCF-YGH-SQSIVSASWVGDD-KVISCSMDGSVRLW 315 (425)
T ss_dssp EEETTTTEEEEEETTSC-EEEECSSSB--------------SCSEEE-CCC-SSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEcCCCE-EEEEECCCC--------------ccceEe-cCC-CccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence 99999999999999998 899998764 112233 222 3459999999999 99999999999999
Q ss_pred ecCCCCCceeeccCCC
Q 004015 355 AINPLGGSVNFQPTDA 370 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~ 370 (779)
++........+..|..
T Consensus 316 d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 316 SLKQNTLLALSIVDGV 331 (425)
T ss_dssp ETTTTEEEEEEECTTC
T ss_pred ECCCCcEeEecccCCc
Confidence 9988766666676644
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-16 Score=171.02 Aligned_cols=202 Identities=13% Similarity=0.135 Sum_probs=137.5
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.+.+++ +...|.+|+|+ +++|+ .+.+++|++||+.+++++.++..+..... ...
T Consensus 160 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---------~v~ 230 (420)
T 3vl1_A 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD---------GVN 230 (420)
T ss_dssp TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC---------CEE
T ss_pred CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC---------Ccc
Confidence 3789999999999999998 57899999996 45555 47789999999999999999876532110 111
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
. +++.... ...+. . ... ..+... ...|
T Consensus 231 ~-------~~~~~~~--------------------------~~~~~----~-----------~~~---~~v~~~--~~s~ 257 (420)
T 3vl1_A 231 S-------IALFVGT--------------------------DRQLH----E-----------IST---SKKNNL--EFGT 257 (420)
T ss_dssp E-------EEEEECC--------------------------CSSCG----G-----------GCC---CCCCTT--CSSC
T ss_pred E-------EEEecCC--------------------------cceee----e-----------ccc---Ccccce--EEcC
Confidence 1 2221100 00000 0 000 000000 0001
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIF 296 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vw 296 (779)
+ | ..++.+..+|.|+|||+.+++.+..+. .|..+|.+|+|+|+|. +|++++.||+ |+||
T Consensus 258 ~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vw 318 (420)
T 3vl1_A 258 Y---------------G---KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQW 318 (420)
T ss_dssp T---------------T---EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEE
T ss_pred C---------------C---CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEE
Confidence 1 1 134556788999999999998887775 6899999999999999 9999999997 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
|+..+. ..+..+. ++....|.++.| +++++|++++.||+|+||++....
T Consensus 319 d~~~~~-------------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 319 DLRSPE-------------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ETTCTT-------------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred EcCCCc-------------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 998640 1122332 223345878855 588999999999999999998743
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=173.37 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=83.3
Q ss_pred CeEEEEECCCCcEEEEecc-------------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRA-------------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~a-------------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
|.|+|||+.+++++..+.+ |..+|.+|+|+|+|++|++++.||+ |+|||+..+
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~------------- 323 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK------------- 323 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT-------------
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC-------------
Confidence 8999999999999999999 9999999999999999999999997 999999875
Q ss_pred eeEEEEeec-----CC--------------CcccEEEEEEcCCC----------CEEEEEeCCCeEEEEecCCC
Q 004015 315 YVHLYRLQR-----GL--------------TNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 315 ~~~l~~l~r-----G~--------------t~a~I~sIaFSpDg----------~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+.. ++ +...|.+++|+||+ ++|++++.||+|+||++..+
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 -ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 34444431 21 13569999999999 79999999999999999753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-16 Score=175.53 Aligned_cols=227 Identities=13% Similarity=0.104 Sum_probs=152.8
Q ss_pred CEEEEEECCCC----cEEEEEeC-CCC-EEEEEEcC----cEEEE-EeCCeEEEEeCCCC--------cEEEEEecCCcc
Q 004015 64 TVVHFYSLRSQ----SYVHMLKF-RSP-IYSVRCSS----RVVAI-CQAAQVHCFDAATL--------EIEYAILTNPIV 124 (779)
Q Consensus 64 ~tVrIWDL~Tg----e~V~tLkf-~s~-V~sV~~s~----rlLaV-s~d~~I~IwD~~T~--------e~l~tl~t~p~~ 124 (779)
+.|+|||+.++ +.+..+.. ... |.+++|+. ++|++ +.++.|++||+.++ +.+..+..+..
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~- 117 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG- 117 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-
Confidence 56999999999 88888874 678 99999965 67776 56889999999855 56666655432
Q ss_pred cCCCCCCCccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecC
Q 004015 125 MGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 202 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lG 202 (779)
....++++| ++|+.++... ......+.++..+.+.. ..+
T Consensus 118 -----------~v~~~~~s~~~~~l~~~~~~~-------------------------~~~~~v~~~d~~~~~~~---~~~ 158 (615)
T 1pgu_A 118 -----------PISDISWDFEGRRLCVVGEGR-------------------------DNFGVFISWDSGNSLGE---VSG 158 (615)
T ss_dssp -----------CEEEEEECTTSSEEEEEECCS-------------------------SCSEEEEETTTCCEEEE---CCS
T ss_pred -----------cEEEEEEeCCCCEEEEeccCC-------------------------CCccEEEEEECCCccee---eec
Confidence 123355544 5565553210 00000001111000000 000
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCC---CeEEEEEcCC
Q 004015 203 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS---PISALCFDPS 279 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~---~IsaLaFSPd 279 (779)
+.. .+.. -...|++ ...++.+..+|.|+|||+.+++++..+.+|.. +|.+++|+|+
T Consensus 159 ~~~--~v~~--~~~~~~~-----------------~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 159 HSQ--RINA--CHLKQSR-----------------PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 217 (615)
T ss_dssp CSS--CEEE--EEECSSS-----------------SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred CCc--cEEE--EEECCCC-----------------CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC
Confidence 000 0000 0000110 01356677899999999999999999999999 9999999999
Q ss_pred -CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec---CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 280 -GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 280 -G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r---G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
|++|++++.||. |+|||+..+ ..+..+.. ++ ...|.+++|+ |+++|++++.||+|+||+
T Consensus 218 ~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 218 SGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIEDDQEPV-QGGIFALSWL-DSQKFATVGADATIRVWD 280 (615)
T ss_dssp TCCEEEEEETTCC-EEEEETTTC--------------CEEEECCBTTBCC-CSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCe-EEEEECCCC--------------CEeEEeccccccc-CCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence 999999999998 899999865 34445523 32 3469999999 999999999999999999
Q ss_pred cCCCCCceeeccC
Q 004015 356 INPLGGSVNFQPT 368 (779)
Q Consensus 356 l~~~gg~~~~~~H 368 (779)
+........+..|
T Consensus 281 ~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 281 VTTSKCVQKWTLD 293 (615)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCcEEEEEcCC
Confidence 9887666666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=182.72 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=157.3
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.++++. +..+|.+++|+ +++|++ +.++.|++||+.+++.+.++..|... ...
T Consensus 35 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------v~~ 102 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY------------IRS 102 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EEE
T ss_pred CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC------------EEE
Confidence 679999999999999998 47899999996 556655 67899999999999999999876432 223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
++++| ++|+.++.+ ..+..|-.+..+.+.. ...++.. .+... ...
T Consensus 103 ~~~s~~~~~l~~~~~d---------------------------g~i~vw~~~~~~~~~~--~~~~~~~--~v~~~--~~~ 149 (814)
T 3mkq_A 103 IAVHPTKPYVLSGSDD---------------------------LTVKLWNWENNWALEQ--TFEGHEH--FVMCV--AFN 149 (814)
T ss_dssp EEECSSSSEEEEEETT---------------------------SEEEEEEGGGTSEEEE--EEECCSS--CEEEE--EEE
T ss_pred EEEeCCCCEEEEEcCC---------------------------CEEEEEECCCCceEEE--EEcCCCC--cEEEE--EEE
Confidence 55544 466655432 1111111111100000 0000000 00000 000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcC--CCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDP--SGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSP--dG~lLATaS~DGt~I~ 294 (779)
|. + ...++.+..+|.|++||+.++.....+..|. ..|.+++|+| +|.+|++++.||+ |+
T Consensus 150 p~----------~-------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~ 211 (814)
T 3mkq_A 150 PK----------D-------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IK 211 (814)
T ss_dssp TT----------E-------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EE
T ss_pred cC----------C-------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EE
Confidence 10 0 0134566788999999999988888887665 8999999999 9999999999997 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
+||+..+ ..+..+ +++ ...|.+++|+||+++|++++.||+|+||++..+.....+..|..
T Consensus 212 ~~d~~~~--------------~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 212 IWDYQTK--------------SCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (814)
T ss_dssp EEETTTT--------------EEEEEE-ECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS
T ss_pred EEECCCC--------------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC
Confidence 9999765 334444 333 24599999999999999999999999999998766666766643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-16 Score=164.94 Aligned_cols=228 Identities=12% Similarity=0.147 Sum_probs=138.6
Q ss_pred CCEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCc---EEEEEecCCcccCCCCCCCc
Q 004015 63 PTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 63 ~~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e---~l~tl~t~p~~~~~p~s~~~ 133 (779)
.++|+|||+.+++ ++.+++ +...|.+|+|+ +++|++ +.|++|++||+.+.+ ++..+..|..
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~---------- 151 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ---------- 151 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS----------
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC----------
Confidence 3679999998874 566666 46789999996 556665 678999999998764 3445544422
Q ss_pred cccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 134 GIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 134 ~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
....++++| ++||.++.+ ..+..|-....+.... ....|+.. .+.
T Consensus 152 --~v~~~~~~p~~~~l~s~s~d---------------------------~~i~~w~~~~~~~~~~-~~~~~h~~--~v~- 198 (345)
T 3fm0_A 152 --DVKHVVWHPSQELLASASYD---------------------------DTVKLYREEEDDWVCC-ATLEGHES--TVW- 198 (345)
T ss_dssp --CEEEEEECSSSSCEEEEETT---------------------------SCEEEEEEETTEEEEE-EEECCCSS--CEE-
T ss_pred --CeEEEEECCCCCEEEEEeCC---------------------------CcEEEEEecCCCEEEE-EEecCCCC--ceE-
Confidence 122344444 455555321 1111111110000000 00001100 000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC---------------CcEEEEecc-CCCCeEEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---------------KNVIAQFRA-HKSPISALC 275 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s---------------~~~v~~f~a-Ht~~IsaLa 275 (779)
.+. -++. | ..++++..||+|+|||... ..++.++.+ |...|.+|+
T Consensus 199 ---~l~---------~sp~----g---~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 199 ---SLA---------FDPS----G---QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp ---EEE---------ECTT----S---SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred ---EEE---------ECCC----C---CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 000 0111 1 1456778899999999632 134566665 899999999
Q ss_pred EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 004015 276 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLF 354 (779)
Q Consensus 276 FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIw 354 (779)
|+|++.+||+++.|++ |+||+..+..... .........+..++. ..|.+|+|+|++ .+||+++.||+|+||
T Consensus 260 ~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~------~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 260 WCQLTGALATACGDDA-IRVFQEDPNSDPQ------QPTFSLTAHLHQAHS-QDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp ECTTTCCEEEEETTSC-EEEEEECTTSCTT------SCCEEEEEEETTSSS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EecCCCEEEEEeCCCe-EEEEEeCCCCCcc------eeeEEEEeeeccccc-CcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 9999999999999998 8999987641000 001122223334543 459999999998 599999999999999
Q ss_pred ecCCCC
Q 004015 355 AINPLG 360 (779)
Q Consensus 355 dl~~~g 360 (779)
++....
T Consensus 332 ~~~~~~ 337 (345)
T 3fm0_A 332 KYQRPE 337 (345)
T ss_dssp EECC--
T ss_pred EecCCC
Confidence 997754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=160.50 Aligned_cols=247 Identities=13% Similarity=0.167 Sum_probs=151.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC---cEEEEEecCCcccCCCCCCCcccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIG 136 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~---e~l~tl~t~p~~~~~p~s~~~~~~ 136 (779)
++|+|||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+. +.+..+..|.. .
T Consensus 39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------~ 106 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------N 106 (313)
T ss_dssp SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------C
T ss_pred CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------C
Confidence 7799999999998888865 7899999996 556655 67899999998865 44556655432 1
Q ss_pred ccceeecCceeEeeCCC--ceecCCCccCCcccccc--ccccc--ccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 137 YGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQS--RSFSG--FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 137 ~~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s--~~~s~--~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.++.|+.++.+ +.+|+.+.... .+... ....- ...++..++....+ |...+.+.. +.+.
T Consensus 107 i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~-~~~~ 177 (313)
T 3odt_A 107 VCSLSFQDGVVISGSWDKTAKVWKEGSLVY-NLQAHNASVWDAKVVSFSENKFLTASAD-------KTIKLWQND-KVIK 177 (313)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTEEEE-EEECCSSCEEEEEEEETTTTEEEEEETT-------SCEEEEETT-EEEE
T ss_pred EEEEEecCCEEEEEeCCCCEEEEcCCcEEE-ecccCCCceeEEEEccCCCCEEEEEECC-------CCEEEEecC-ceEE
Confidence 23455566777776543 34454321100 00000 00000 00022222211111 111122211 0000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
.+.......+...... . .+.++.+..+|.|+|||+.+++++..+.+|..+|++++|+|+| .|++++.||
T Consensus 178 ----~~~~~~~~~i~~~~~~--~----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg 246 (313)
T 3odt_A 178 ----TFSGIHNDVVRHLAVV--D----DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDR 246 (313)
T ss_dssp ----EECSSCSSCEEEEEEE--E----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ----EEeccCcccEEEEEEc--C----CCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCC
Confidence 0000000111100000 0 1235677889999999999999999999999999999999999 588999998
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
+ |+|||+..+ ..+..+. ++ ...|.+++|+||++ +++++.||+|+||++....
T Consensus 247 ~-v~iwd~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 247 T-VRIWSKENG--------------SLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp E-EEEECTTTC--------------CEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred E-EEEEECCCC--------------ceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 7 999999875 2334443 22 24599999999999 5579999999999997653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=188.88 Aligned_cols=117 Identities=11% Similarity=0.037 Sum_probs=92.5
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEE--EEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISAL--CFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaL--aFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++++..||+|+|||+.++ .++..+.+|..+|.+| +|+|+| ++|||||.||+ |+|||+... ...
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~~------------~~~ 346 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKDI------------ATT 346 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGGH------------HHH
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCCC------------Ccc
Confidence 455678999999999976 4566789999999999 689998 99999999997 899999764 111
Q ss_pred EEEEeecCCCc-ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 317 HLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 317 ~l~~l~rG~t~-a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
. .+. ++.. ..|.+++||||++.||+++.|++|+|||+........+.+|...+.
T Consensus 347 ~--~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~ 401 (524)
T 2j04_B 347 K--TTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401 (524)
T ss_dssp C--EEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEE
T ss_pred c--ccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceE
Confidence 1 111 1111 2378999999999999999999999999998777778888865443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=166.79 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=142.6
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE--c--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC--S--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~--s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+.+++.+....+...|.+|+| + +++|++ +.++.|++||+.+.+.+.++..+....
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------ 174 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY------------ 174 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE------------
T ss_pred CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce------------
Confidence 37899999999999998889999999999 5 444554 678999999999999988887643110
Q ss_pred cceeecCceeEee--CCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGPRWLAYS--GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgpRwLAya--s~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
.+......++.+ +..+.+++. +..... ...+...... ...+..
T Consensus 175 -~~~~~~~~~~~~~~~~~i~~~~~-----------------------------~~~~~~---~~~~~~~~~~--~~~~~~ 219 (368)
T 3mmy_A 175 -CADVIYPMAVVATAERGLIVYQL-----------------------------ENQPSE---FRRIESPLKH--QHRCVA 219 (368)
T ss_dssp -EEEEETTEEEEEEGGGCEEEEEC-----------------------------SSSCEE---EEECCCSCSS--CEEEEE
T ss_pred -EEEecCCeeEEEeCCCcEEEEEe-----------------------------ccccch---hhhccccccC--CCceEE
Confidence 111112222222 111222211 000000 0000000000 000000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC---cEEEEeccCCC------------CeEEEEEcCCC
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS------------PISALCFDPSG 280 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~---~~v~~f~aHt~------------~IsaLaFSPdG 280 (779)
+.++.. .. ...++.+..+|.|+|||+... ..+..+.+|.. +|++++|+|+|
T Consensus 220 ~~~~~~---------~~-----~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 220 IFKDKQ---------NK-----PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp EEECTT---------SC-----EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred EcccCC---------CC-----CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 000000 00 001456778999999999987 66788888886 79999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
++||+++.||+ |+|||+..+ ..+..+. ++ ...|.+++|+||+++||+++.|+..+.|++-...
T Consensus 286 ~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 286 GTLATVGSDGR-FSFWDKDAR--------------TKLKTSE-QL-DQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CCEEEEETTSC-EEEEETTTT--------------EEEEECC-CC-SSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CEEEEEccCCe-EEEEECCCC--------------cEEEEec-CC-CCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 99999999998 899999875 4455553 32 3459999999999999999999977777665433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-16 Score=163.17 Aligned_cols=234 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred CEEEEEECCCCcEEEEE--eCCCCEEEEEEcC-----cEEEE-EeCCeEEEEeCCCCc-EEEEEecCCcccCCCCCCCcc
Q 004015 64 TVVHFYSLRSQSYVHML--KFRSPIYSVRCSS-----RVVAI-CQAAQVHCFDAATLE-IEYAILTNPIVMGHPSAGGIG 134 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tL--kf~s~V~sV~~s~-----rlLaV-s~d~~I~IwD~~T~e-~l~tl~t~p~~~~~p~s~~~~ 134 (779)
++|+|||+.+++..... .+...|.+++|+. ++|++ +.++.|++||+.+.+ .+..+..|.....+
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------- 116 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA------- 116 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEE-------
T ss_pred cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEE-------
Confidence 78999999999876554 4578999999952 55555 678999999999988 78888766432111
Q ss_pred ccccc-eeecC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccc
Q 004015 135 IGYGP-LAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 209 (779)
Q Consensus 135 ~~~~p-iAlgp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~l 209 (779)
+.+.+ +++++ ++|+.++.+ +.+|+..... ..+..+.. ..++.. ..+
T Consensus 117 ~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----------------~~~~~~~~-----------~~~~~~-~~v 167 (357)
T 3i2n_A 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----------------DPVANMEP-----------VQGENK-RDC 167 (357)
T ss_dssp EEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----------------SCSEEECC-----------CTTSCC-CCE
T ss_pred EeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----------------Ccceeccc-----------cCCCCC-Cce
Confidence 11100 12222 455555432 2233211000 00000000 000000 000
Q ss_pred ccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC---CCCEEEEE
Q 004015 210 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SGILLVTA 286 (779)
Q Consensus 210 s~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP---dG~lLATa 286 (779)
....... ..++. ...++.+..+|.|++||+.+++.+ ....|...|.+++|+| +|.+|+++
T Consensus 168 ~~~~~~~---------~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 168 WTVAFGN---------AYNQE-------ERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEEEEEC---------CCC-C-------CCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred EEEEEEe---------ccCCC-------CCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 0000000 00010 113556678899999999998874 4468899999999999 99999999
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCc
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
+.||+ |+|||+.....- .......+ .++ ...|.+++|+||++ +|++++.||+|+||++......
T Consensus 231 ~~dg~-i~i~d~~~~~~~---------~~~~~~~~-~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 231 SLEGK-FHVFDMRTQHPT---------KGFASVSE-KAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp ESTTE-EEEEEEEEEETT---------TEEEEEEE-ECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCCe-EEEEeCcCCCcc---------cceeeecc-CCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 99997 899998764100 00111111 233 34599999999999 8999999999999999875443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-17 Score=171.05 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=87.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE-
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL- 318 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l- 318 (779)
++++..||.|+|||+.+++++..+. .|...|.+++|+|+|.+||+|+.||+ |+|||+..+ ..+
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~--------------~~~~ 206 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSP--------------DQAS 206 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCT--------------TSCC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------CCCc
Confidence 3456678999999999999877775 45568999999999999999999998 899999875 111
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
..+..++ ...|.+++|+||+++|++++ |++|+|||+........+..
T Consensus 207 ~~~~~~h-~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 207 SRFPVDE-EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp EECCCCT-TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred cEEeccC-CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 2332222 35699999999999999999 55999999988765555554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=156.92 Aligned_cols=228 Identities=10% Similarity=0.134 Sum_probs=142.2
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeC-----CeEEEEeCCCCcEEEEEecCCcc-c-CCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQA-----AQVHCFDAATLEIEYAILTNPIV-M-GHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d-----~~I~IwD~~T~e~l~tl~t~p~~-~-~~p~s~~ 132 (779)
.++|++||+.+++.+..+.+...|.+++|+ +++|++ +.+ +.|++||+.+.+....+...... . ......+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 378999999999999999999999999996 566665 455 79999999876543222211000 0 0000000
Q ss_pred ccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 133 IGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 133 ~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
......+++++ ++|+.++.+ ..+..|-.........-+ .+... .+.
T Consensus 175 -~~~~~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~--~~~~~--~v~ 222 (369)
T 3zwl_B 175 -LDAATVAGWSTKGKYIIAGHKD---------------------------GKISKYDVSNNYEYVDSI--DLHEK--SIS 222 (369)
T ss_dssp -CCCEEEEEECGGGCEEEEEETT---------------------------SEEEEEETTTTTEEEEEE--ECCSS--CEE
T ss_pred -ccceeEEEEcCCCCEEEEEcCC---------------------------CEEEEEECCCCcEeEEEE--ecCCC--cee
Confidence 00122333433 455554321 111111111100000000 00000 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG 290 (779)
.. .. .+. ...++.+..+|.|+|||+.+++.+..+. |..++.+++|+|+|++|++++.++
T Consensus 223 ~~--~~-----------~~~-------~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 223 DM--QF-----------SPD-------LTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EE--EE-----------CTT-------SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred EE--EE-----------CCC-------CCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence 00 00 011 1134566789999999999999998888 788999999999999999999987
Q ss_pred C-------------EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 291 H-------------NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 291 t-------------~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. .+++||+..+ ..+..+ .++ ...|.+++|+||+++|++++.||+|+||++.
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~-~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFE--------------EEIGRV-QGH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -------------CEEEEEETTTC--------------CEEEEE-ECC-SSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred CceEEEEecCCCcceeEEEecCCC--------------cchhhe-ecc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 3 4899998765 334444 333 3459999999999999999999999999997
Q ss_pred CC
Q 004015 358 PL 359 (779)
Q Consensus 358 ~~ 359 (779)
..
T Consensus 346 ~~ 347 (369)
T 3zwl_B 346 KS 347 (369)
T ss_dssp HH
T ss_pred cc
Confidence 64
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-16 Score=171.01 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=157.8
Q ss_pred CCCEEEEEECCCCcEEEEEe-CCCCEEEEEEcCcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..++|++||+.+++.++++. +...|.++.++++.| +.+.++.|++||+.+++++.++..+.....+
T Consensus 177 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~------------ 244 (445)
T 2ovr_B 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC------------ 244 (445)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE------------
T ss_pred CCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE------------
Confidence 46889999999999999997 599999999986554 5699999999999999999999887665444
Q ss_pred eeecCceeEeeCCC--ceecCCCccCCc-ccccccccccccCCCcceeeeecccccchhc----eeeecCCccccccccc
Q 004015 140 LAVGPRWLAYSGSP--VVVSNDGRVNPQ-HLMQSRSFSGFASNGSRVAHYAKESSKHLAA----GIVNLGDLGYKKLSQY 212 (779)
Q Consensus 140 iAlgpRwLAyas~~--~i~~~sgrvspq-~ls~s~~~s~~~s~g~~va~~A~~~sK~La~----Gl~~lGd~~~~~ls~y 212 (779)
+++..++|+.++.+ +.+|+.....+. .+. .....+...+. ..+.++. |...+.+.........
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---------GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGGTEEEEEEC---------CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEECCCEEEEEcCCCEEEEEECCCCcEeEEec---------CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 22244555555442 334431100000 000 00011111111 1111111 1111222110000000
Q ss_pred cccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEEcCCCCEEEEEeCC
Q 004015 213 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPISALCFDPSGILLVTASVQ 289 (779)
Q Consensus 213 ~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a---Ht~~IsaLaFSPdG~lLATaS~D 289 (779)
+......+...... ...++.+..+|.|++||+.+++++..+.. |..+|.+++|+ +.+|++|+.|
T Consensus 315 ----~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 315 ----LTGHQSLTSGMELK-------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp ----ECCCCSCEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred ----EcCCcccEEEEEEe-------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 00000000000000 12456777899999999999999999986 88999999996 6899999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEe---ecCCCcccEEEEEEcCCCCEEEEEeCCCe----EEEEecCCC
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRL---QRGLTNAVIQDISFSDDSNWIMISSSRGT----SHLFAINPL 359 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l---~rG~t~a~I~sIaFSpDg~~LAtgS~DGT----VhIwdl~~~ 359 (779)
|+ |+|||+.++ ..+..+ ..+.....|++++|+||+.+||+++.||+ ++|||+...
T Consensus 382 g~-v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 382 GT-VKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SE-EEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred Ce-EEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 97 999999875 233333 22333456999999999999999999998 999999764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=191.26 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=150.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|+|||+.+++.+.+++. ...|.+|+|+ +++|++ +.+++|++||+.+++++.++..|... ..
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------v~- 703 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ------------VN- 703 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC------------EE-
T ss_pred CeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc------------EE-
Confidence 6799999999999999984 7899999996 556665 67899999999999999998776321 11
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+++.... ++.
T Consensus 704 ------~~~~~~~~-------------------------~~~-------------------------------------- 714 (1249)
T 3sfz_A 704 ------CCHFTNKS-------------------------NHL-------------------------------------- 714 (1249)
T ss_dssp ------EEEECSSS-------------------------SCC--------------------------------------
T ss_pred ------EEEEecCC-------------------------Cce--------------------------------------
Confidence 12222100 000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++++..+|.|+|||+.+++++..+.+|..+|.+++|+|+|++|++++.||+ |++||+.
T Consensus 715 --------------------~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~-v~vwd~~ 773 (1249)
T 3sfz_A 715 --------------------LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT-LRLWDVR 773 (1249)
T ss_dssp --------------------EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE-EEEEEGG
T ss_pred --------------------EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe-EEEEeCC
Confidence 1233456899999999999999999999999999999999999999999997 9999986
Q ss_pred CCCC-------C--------------C-CC-ccCCCC--------ce---------eEEEEeecCCCcccEEEEEEcCCC
Q 004015 300 PGIL-------G--------------T-SS-ACDAGT--------SY---------VHLYRLQRGLTNAVIQDISFSDDS 339 (779)
Q Consensus 300 ~~~~-------g--------------~-~s-~~~~~~--------s~---------~~l~~l~rG~t~a~I~sIaFSpDg 339 (779)
.+.. . . .+ ...+.+ .. ..+..+..++ ...|.+++|+|++
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~ 852 (1249)
T 3sfz_A 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH-HSTIQYCDFSPYD 852 (1249)
T ss_dssp GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS-SSCCCEEEECSST
T ss_pred CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC-CCceEEEEEcCCC
Confidence 5410 0 0 00 000000 00 1112222232 3458999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 340 NWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
+++++++.||+|+||++.+......+.+|...+.
T Consensus 853 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 9999999999999999998777777788865433
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-16 Score=169.51 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecC
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
.++|++||+.+++.+.+++. ...|.++.+++++|++ +.+++|++||+.+++++.++..|
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence 37799999999999999874 7889999998777665 67899999999999999888765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=171.10 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=90.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f--~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
+++..+|.|+|||+.+++++..+ .+|...|.+|+|+|+|++|++++.||+ |+|||+..+ ..+.
T Consensus 148 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~--------------~~~~ 212 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKG--------------TVVA 212 (402)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE-EEEEETTTT--------------EEEE
T ss_pred EEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc-EEEEeCCCC--------------ceee
Confidence 34456899999999999999999 899999999999999999999999987 999999875 3445
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEE---eCCCeEEEEecCCCCCc
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMIS---SSRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtg---S~DGTVhIwdl~~~gg~ 362 (779)
.+..++....+.+++|+||+++|++| +.|++|+|||+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~ 258 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC
Confidence 55445554558899999999999999 79999999999876553
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=178.34 Aligned_cols=175 Identities=16% Similarity=0.235 Sum_probs=133.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEcCcEEEEEe--CCeEEEEeCCCCcEEE-EEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQ--AAQVHCFDAATLEIEY-AILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s~rlLaVs~--d~~I~IwD~~T~e~l~-tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
...+++|++.+++.+..+.+...|.+++|++++|+++. ++.|++||+.+.+... .+..+. .+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---------------~~ 490 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR---------------AK 490 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---------------SC
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---------------Cc
Confidence 36788888889999999999999999999988887755 7899999999875442 221110 01
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ..+++.. +|.
T Consensus 491 v----~~~~~s~---------------------------~g~-------------------------------------- 501 (615)
T 1pgu_A 491 P----SYISISP---------------------------SET-------------------------------------- 501 (615)
T ss_dssp E----EEEEECT---------------------------TSS--------------------------------------
T ss_pred e----EEEEECC---------------------------CCC--------------------------------------
Confidence 1 1122220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEEcC----------CCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDP----------SGILLVTASV 288 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a-Ht~~IsaLaFSP----------dG~lLATaS~ 288 (779)
.++.+..+|.|+|||+.+++++..+.+ |..+|++|+|+| +|++||+++.
T Consensus 502 --------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~ 561 (615)
T 1pgu_A 502 --------------------YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 561 (615)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred --------------------EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence 123345678999999999999999998 999999999999 9999999999
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
||+ |+|||+..+ ...+..+ +++ ...|.+++|+||++ |++++.||+|+||++..
T Consensus 562 dg~-i~iw~~~~~-------------~~~~~~~-~~h-~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 562 DTN-IFIYSVKRP-------------MKIIKAL-NAH-KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TSC-EEEEESSCT-------------TCCEEET-TSS-TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCc-EEEEECCCC-------------ceechhh-hcC-ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 998 899999764 0223333 444 34599999999999 99999999999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=165.48 Aligned_cols=104 Identities=11% Similarity=0.129 Sum_probs=79.2
Q ss_pred ccCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVSKNVI-AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v-~~f~a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..+|.|+|||+++++.+ ..|.. |..+|++|+|+|+|.+|++++. ++ |+|||++.... ...+..
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~-----------~~~~~~ 253 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVG-----------TLAYPT 253 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTT-----------CBSSCC
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCc-----------ceeecc
Confidence 3457899999999999888 88998 9999999999999999999994 45 99999987511 000000
Q ss_pred eecCCCcccE--EEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 321 LQRGLTNAVI--QDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~t~a~I--~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
+. . ....+ .+++|+|+|++||+++. |++++||++.....
T Consensus 254 ~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 254 YT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp CB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred cc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 00 0 00112 47999999999999999 99999999976543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-16 Score=166.58 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=84.0
Q ss_pred CeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~--~f~aHt~~IsaLaFSPdG~lLATaS~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
+.+.+|+..++..+. .+..|...|.+++|+|||++|++++.++. .+++|++.... ........+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----------~~~~~~~~~~ 266 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----------TSVLRSKQVT 266 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----------EEEEEEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----------ecceeeeeec
Confidence 456677777766554 34579999999999999999999998874 47888876540 0111222332
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee-ccCCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANFT 373 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~-~~H~~~~~ 373 (779)
++ ...|.+++|||||++||+|+.|++|+|||+.+......+ ++|...+.
T Consensus 267 -~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 267 -NR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp -SS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred -CC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 32 235999999999999999999999999999987666565 67865443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-17 Score=174.54 Aligned_cols=111 Identities=17% Similarity=0.337 Sum_probs=88.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEE----EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALC----FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLa----FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.+..+|.|+|||+++++++..+. .|..+|.+|+ |+|+|++|++++.||+ |+|||+..+ ..
T Consensus 231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~ 295 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKG--------------HC 295 (437)
T ss_dssp EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTT--------------EE
T ss_pred EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCC--------------cE
Confidence 34567999999999999999987 8889999995 5567999999999997 999999865 22
Q ss_pred EEEee-----------------------cC-CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 318 LYRLQ-----------------------RG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 318 l~~l~-----------------------rG-~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+..+. .| .....|.+++|+ ++++|++++.||+|+|||+........+.+|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 22222 11 123348999999 88999999999999999999887777787774
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=181.10 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=83.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC--------------C
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT--------------S 306 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~--------------~ 306 (779)
++.+..+++|+|||++++.++.+|.+|.++|++|+|||+|++||+|+.||+ |+|||+....... .
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~ 448 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWK 448 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEE
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEE
Confidence 456678899999999999998999999999999999999999999999997 8999975431110 0
Q ss_pred CccCCCCc----------------eeEEEEeecCCCcccEEEEEEcCCC---CEEEEEeCCCeEEEEecCC
Q 004015 307 SACDAGTS----------------YVHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 307 s~~~~~~s----------------~~~l~~l~rG~t~a~I~sIaFSpDg---~~LAtgS~DGTVhIwdl~~ 358 (779)
-++.+.+. ...+..+ +|+ ...|.+|+||||+ .+||+|+.||+|+||++.-
T Consensus 449 v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l-~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 449 WDYSIKDDKYRIDSSYEVYPLTVNDVSKAKI-DAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CBCCSSSCEEEECCCCCCCC--------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eccCCCCCeEEccCCceecccccCCcceeee-cCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 01111111 1112222 233 2458999999995 4999999999999999853
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-16 Score=161.11 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=143.6
Q ss_pred CEEEEEECCCCc----EEEEEeCCCCEEEEEEc--Cc-EEEE-EeCCeEEEEeC-CCCcEEEEEec--CCcccCCCCCCC
Q 004015 64 TVVHFYSLRSQS----YVHMLKFRSPIYSVRCS--SR-VVAI-CQAAQVHCFDA-ATLEIEYAILT--NPIVMGHPSAGG 132 (779)
Q Consensus 64 ~tVrIWDL~Tge----~V~tLkf~s~V~sV~~s--~r-lLaV-s~d~~I~IwD~-~T~e~l~tl~t--~p~~~~~p~s~~ 132 (779)
++|+|||+.+++ ......+...|.+++|+ ++ +|++ +.++.|++||+ .+.+. ..+.. |..
T Consensus 33 ~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~--------- 102 (342)
T 1yfq_A 33 GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANL--------- 102 (342)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCS---------
T ss_pred CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCC---------
Confidence 679999999988 66666778999999995 56 5554 67899999999 88765 44444 321
Q ss_pred ccccccceeec-CceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeeccc---------ccchhceeeecC
Q 004015 133 IGIGYGPLAVG-PRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES---------SKHLAAGIVNLG 202 (779)
Q Consensus 133 ~~~~~~piAlg-pRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~---------sK~La~Gl~~lG 202 (779)
....+++. .++|+.++.+ ..+..|-... .+.+. .+.
T Consensus 103 ---~v~~l~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~----~~~ 148 (342)
T 1yfq_A 103 ---GICRICKYGDDKLIAASWD---------------------------GLIEVIDPRNYGDGVIAVKNLNSN----NTK 148 (342)
T ss_dssp ---CEEEEEEETTTEEEEEETT---------------------------SEEEEECHHHHTTBCEEEEESCSS----SSS
T ss_pred ---ceEEEEeCCCCEEEEEcCC---------------------------CeEEEEcccccccccccccCCeee----EEe
Confidence 11223333 2445544321 1111111110 00000 000
Q ss_pred CccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCC-Cc--EEEEeccCCCCeEEEEEcC-
Q 004015 203 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KN--VIAQFRAHKSPISALCFDP- 278 (779)
Q Consensus 203 d~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s-~~--~v~~f~aHt~~IsaLaFSP- 278 (779)
....+...... ...++.+..+|.|++||+.+ +. .......|..+|.+++|+|
T Consensus 149 -----------------~~~~v~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 149 -----------------VKNKIFTMDTN-------SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp -----------------SCCCEEEEEEC-------SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred -----------------eCCceEEEEec-------CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence 00000000000 01145567889999999998 54 3345568899999999999
Q ss_pred CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC-----CCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 279 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-----LTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 279 dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG-----~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
+|++|++++.||. |+||++... +... .......+..++. .+...|.+++|+||+++|++++.||+|+|
T Consensus 205 ~~~~l~~~~~dg~-i~i~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 205 EQEGYACSSIDGR-VAVEFFDDQ--GDDY----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp GGCEEEEEETTSE-EEEEECCTT--CCST----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred CCCEEEEEecCCc-EEEEEEcCC--Cccc----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEE
Confidence 9999999999997 899998753 0000 0011222322221 01236999999999999999999999999
Q ss_pred EecCCCCCceeeccC
Q 004015 354 FAINPLGGSVNFQPT 368 (779)
Q Consensus 354 wdl~~~gg~~~~~~H 368 (779)
||+........+..|
T Consensus 278 wd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 278 WNLQTRKKIKNFAKF 292 (342)
T ss_dssp EETTTTEEEEECCCC
T ss_pred EcCccHhHhhhhhcc
Confidence 999887665666666
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=163.02 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=83.6
Q ss_pred cCCCCeEEEEECCCCcEEEEec-----cCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCC-----ccCCC
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSS-----ACDAG 312 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~-----aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s-----~~~~~ 312 (779)
+..+|.|+|||+.+++++..+. +|...|.+++|+|+|. +|++++.||. |+|||+......... .....
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCC
T ss_pred ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccc
Confidence 4567899999999876655554 9999999999999999 8999999997 999998764110000 00001
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 359 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~ 359 (779)
+....+..+. ++ ...|.+++|+||+++|+ +++.||+|+||++...
T Consensus 309 ~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 309 GSVSLLQNVT-LS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEEEEE-CC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccceeeccc-cC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 1223455553 33 34699999999999999 7999999999999764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-16 Score=166.88 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=86.4
Q ss_pred ccccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEEcCCC-CEEEEEeCCCCEEEEEeCCCCCCCCCCccCC
Q 004015 241 FPDADNVGMVIVRDIVS-KNVIA-------QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s-~~~v~-------~f~aHt~~IsaLaFSPdG-~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
++++ .||.|+|||+.+ +..+. .+.+|...|.+++|+|+| .+||+|+.||+ |+|||+..+....
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~------ 263 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCD------ 263 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSC------
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCcccc------
Confidence 4455 699999999994 44444 367999999999999999 99999999998 8999998751000
Q ss_pred CCceeEEEEeecCCCc-----------ccEEEEEEcCCCCEEEEEeCCCeEEEEecCC-CCCceeeccCC
Q 004015 312 GTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNFQPTD 369 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~-~gg~~~~~~H~ 369 (779)
..+..+ .++.. ..|.+++|+||+++|++++. ++|+|||+.. ......+..|.
T Consensus 264 ----~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 264 ----RHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp ----TTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred ----ceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 001122 22211 25999999999999999999 9999999987 54455666663
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=167.68 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=133.1
Q ss_pred CCEEEEEECCCC-------cEEEEEe-CCCCEEEEEEc--C-cEEEE-EeCCeEEEEeCCCCcEEEEE--ecCCcccCCC
Q 004015 63 PTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEIEYAI--LTNPIVMGHP 128 (779)
Q Consensus 63 ~~tVrIWDL~Tg-------e~V~tLk-f~s~V~sV~~s--~-rlLaV-s~d~~I~IwD~~T~e~l~tl--~t~p~~~~~p 128 (779)
.++|+|||+.++ +.+.++. +...|.+|+|+ + ++|++ +.++.|++||+.+++++.++ ..|..
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----- 177 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----- 177 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----
Confidence 378999999998 6677777 57899999996 2 46655 67899999999999988888 33321
Q ss_pred CCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccc
Q 004015 129 SAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 208 (779)
Q Consensus 129 ~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ 208 (779)
++ ..+++.. +|.
T Consensus 178 ----------~v----~~~~~~~---------------------------~~~--------------------------- 189 (402)
T 2aq5_A 178 ----------TI----YSVDWSR---------------------------DGA--------------------------- 189 (402)
T ss_dssp ----------CE----EEEEECT---------------------------TSS---------------------------
T ss_pred ----------ce----EEEEECC---------------------------CCC---------------------------
Confidence 01 0122210 111
Q ss_pred cccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-ccCCCC-eEEEEEcCCCCEEEEE
Q 004015 209 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSP-ISALCFDPSGILLVTA 286 (779)
Q Consensus 209 ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-~aHt~~-IsaLaFSPdG~lLATa 286 (779)
.++.+..+|.|+|||+++++++..+ .+|.+. +.+++|+|+|++|+++
T Consensus 190 -------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 190 -------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp -------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred -------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 1233456899999999999999999 799886 9999999999999999
Q ss_pred ---eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCC
Q 004015 287 ---SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGG 361 (779)
Q Consensus 287 ---S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg 361 (779)
+.||+ |+|||+.... ....+..+ . ....|.+++|+||+++|+++ +.||+|+||++.....
T Consensus 239 ~~~~~d~~-i~iwd~~~~~-----------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 239 FSRMSERQ-VALWDTKHLE-----------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ECTTCCEE-EEEEETTBCS-----------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ccCCCCce-EEEEcCcccc-----------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 78876 9999998640 01122222 1 22348999999999999755 5799999999987643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=161.98 Aligned_cols=113 Identities=12% Similarity=0.212 Sum_probs=90.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+++..||+|+|||+.+++.+..|.+|..+|.+|+|+|+|++|++++.||+ |+|||+... ....+
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~-i~~wd~~~~---------------~~~~~ 155 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE-IKLWNILGE---------------CKFSS 155 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC-EEEEESSSC---------------EEEEC
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE-EEEEeccCC---------------ceeee
Confidence 34567899999999999999999999999999999999999999999998 899998742 12222
Q ss_pred ec-CCCcccEEEEEEcCCC----------CEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 322 QR-GLTNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 322 ~r-G~t~a~I~sIaFSpDg----------~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.. ..+...|.+++|+|++ .+|++++.||+|+|||. .......+..|...
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 11 1123459999999997 79999999999999994 33344456677543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=170.71 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=86.7
Q ss_pred CCCCeEEEEECCCCcEEE----EeccCCCCeEEEEEcCC---CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 245 DNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~----~f~aHt~~IsaLaFSPd---G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
..+|.|.+||+.++.... .+.+|...|.+|+|+|+ |++|++|+.||+ |+|||+..+ ..
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~--------------~~ 232 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQC--------------FI 232 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCT--------------TC
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCC--------------ce
Confidence 457889999998876544 78899999999999999 999999999998 899999764 22
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
+..+..++. ..|.+++|+ |+++|++++.|++|+|||+........+..
T Consensus 233 ~~~~~~~h~-~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 233 VDKWLFGHK-HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEEECCCCS-SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eeeeecCCC-CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 334334443 459999999 999999999999999999988765555543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-16 Score=188.69 Aligned_cols=176 Identities=15% Similarity=0.107 Sum_probs=131.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc-Cc-EEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s-~r-lLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|+|||..+++.+..+.+..+|.+|+|+ ++ +++++.|++|++||+.+++++.++. ++. .+
T Consensus 39 g~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~---------------~V- 101 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG---------------KI- 101 (902)
T ss_dssp SEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSS---------------CE-
T ss_pred CEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCC---------------CE-
Confidence 78999999999988887778899999997 55 4455789999999999999888874 211 01
Q ss_pred ecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCc
Q 004015 142 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 221 (779)
Q Consensus 142 lgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~ 221 (779)
..+++. | ++.
T Consensus 102 ---~~v~~s-------------p--------------~g~---------------------------------------- 111 (902)
T 2oaj_A 102 ---TSIDTD-------------A--------------SLD---------------------------------------- 111 (902)
T ss_dssp ---EEEECC-------------T--------------TCS----------------------------------------
T ss_pred ---EEEEEC-------------C--------------CCC----------------------------------------
Confidence 011221 0 111
Q ss_pred CccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEE-----------EEeccCCCCeEEEEEcCC-CCEEEEEeCC
Q 004015 222 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI-----------AQFRAHKSPISALCFDPS-GILLVTASVQ 289 (779)
Q Consensus 222 ~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v-----------~~f~aHt~~IsaLaFSPd-G~lLATaS~D 289 (779)
.++.+..+|.|++||+.++++. ..+++|.++|.+|+|+|+ +.+|++|+.|
T Consensus 112 ------------------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 112 ------------------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp ------------------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred ------------------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 1223456799999999988764 334689999999999996 5799999999
Q ss_pred CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC----------------CCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG----------------LTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 290 Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG----------------~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
|+ | |||+... ..+..+... .+...|.+++|+|||++||+++.||+|+|
T Consensus 174 g~-v-lWd~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 174 VT-L-TYSLVEN--------------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp CE-E-EEETTTT--------------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred Cc-E-EEECCCC--------------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 87 8 9999875 233333211 01245999999999999999999999999
Q ss_pred EecCCCC
Q 004015 354 FAINPLG 360 (779)
Q Consensus 354 wdl~~~g 360 (779)
||+....
T Consensus 238 Wd~~~g~ 244 (902)
T 2oaj_A 238 WDANSGH 244 (902)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=164.72 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=85.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.+..+|.|+|||+.+++++..+.+|..+|.+++|+ +.+|++++.||+ |+|||+... ...+
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~--------------~~~~ 386 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY--------------SRKF 386 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEE
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC--------------ceee
Confidence 35677889999999999999999999999999999998 689999999997 999999864 2334
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.+.. ...+..++|++++++|++++ ||+|+|||+.+..
T Consensus 387 ~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 387 SYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4432 23477899999999999999 9999999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=195.99 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=143.4
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.++|++||+.+++.+....+...|.++.++ +++++++.++.|++||+.+++.+.++..|.... ..
T Consensus 1024 dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v------------~~- 1090 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV------------LS- 1090 (1249)
T ss_dssp SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC------------CC-
T ss_pred CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcE------------EE-
Confidence 377999999999988777778999999995 567777899999999999999888887653211 11
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
+++.. +|.
T Consensus 1091 ------~~~s~---------------------------d~~--------------------------------------- 1098 (1249)
T 3sfz_A 1091 ------CAISS---------------------------DAT--------------------------------------- 1098 (1249)
T ss_dssp ------EEECS---------------------------SSS---------------------------------------
T ss_pred ------EEECC---------------------------CCC---------------------------------------
Confidence 12210 111
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 300 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~ 300 (779)
.++.+..+|.|+|||+.+++++..+.+|..+|++++|+|||++|||++.||+ |+|||+.+
T Consensus 1099 -------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~ 1158 (1249)
T 3sfz_A 1099 -------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSD 1158 (1249)
T ss_dssp -------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSS
T ss_pred -------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence 1233456789999999999999999999999999999999999999999998 89999987
Q ss_pred CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 301 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 301 ~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+..-.... .... .....+ +...|.+++|||||++|++++ |+++|||+.+......+..|.
T Consensus 1159 ~~~~~~~~-----~~~~-~~~~~~-~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A 1159 GQLLHSCA-----PISV-EEGTAT-HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp SCCCCCCC-----CCC---------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred CceEEEec-----cccc-cccccc-cCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence 51100000 0000 000112 223589999999999999885 999999999877666666664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=168.46 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=88.7
Q ss_pred ccccCCCC---eEEEEECCCC-cEEEEec-cCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 241 FPDADNVG---MVIVRDIVSK-NVIAQFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 241 ~~s~~~dG---~V~VwDl~s~-~~v~~f~-aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.+..+| .|+|||+.++ .++..+. +|...|.+|+|+| +|++|++++.||+ |+|||+..+
T Consensus 230 l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~------------- 295 (416)
T 2pm9_A 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA------------- 295 (416)
T ss_dssp EEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC-------------
T ss_pred EEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC-------------
Confidence 44556666 9999999986 6788888 9999999999999 9999999999997 999999865
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCC-CEEEEEeCCCeEEEEecCCCCCcee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg-~~LAtgS~DGTVhIwdl~~~gg~~~ 364 (779)
..+..+. ++ ...|.+++|+||+ ++|++++.||+|+||++........
T Consensus 296 -~~~~~~~-~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 296 -EQLSQFP-AR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp -CEEEEEE-CS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred -ccceeec-CC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 3444543 32 2458999999999 8999999999999999987654433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=171.08 Aligned_cols=218 Identities=11% Similarity=0.169 Sum_probs=142.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEE---EEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIE---YAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l---~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+.+++.+.++.. ...|.++++++.+|++ +.++.|++||+.+.+.. ..+..|.. ..
T Consensus 192 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~------------~v 259 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA------------AV 259 (435)
T ss_dssp TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS------------CE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC------------cE
Confidence 57899999999999999975 6789999998766665 67899999999988765 44444421 12
Q ss_pred cceeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
..+++...+|+.++.+ +.+|+.. .+..+..+ -++..
T Consensus 260 ~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~--------------~~~~~---------- 297 (435)
T 1p22_A 260 NVVDFDDKYIVSASGDRTIKVWNTS------------------TCEFVRTL--------------NGHKR---------- 297 (435)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETT------------------TCCEEEEE--------------ECCSS----------
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECC------------------cCcEEEEE--------------cCCCC----------
Confidence 3355556666666432 2222210 00000000 00000
Q ss_pred ccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEE
Q 004015 216 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 295 (779)
Q Consensus 216 l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~V 295 (779)
.+...... ...++.+..+|.|+|||+.+++++..+.+|..+|.+|+| +|.+|++|+.||+ |+|
T Consensus 298 -------~v~~~~~~-------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~v 360 (435)
T 1p22_A 298 -------GIACLQYR-------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKV 360 (435)
T ss_dssp -------CEEEEEEE-------TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEE
T ss_pred -------cEEEEEeC-------CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEE
Confidence 00000000 113566778999999999999999999999999999999 8999999999998 899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
||+..+...... .....+..+ .++ ...|.+++| |+++|++++.||+|+||++....
T Consensus 361 wd~~~~~~~~~~-----~~~~~~~~~-~~h-~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 361 WDLVAALDPRAP-----AGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEHHHHTSTTSC-----TTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred EECCCCCCcccc-----ccchheeec-cCC-CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 998654100000 001134444 333 345899999 88999999999999999997753
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-16 Score=166.41 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=84.6
Q ss_pred cccCCCCeEEEEECCCCcE----EEEeccCCC------------CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCC-CCCC
Q 004015 242 PDADNVGMVIVRDIVSKNV----IAQFRAHKS------------PISALCFDPSGILLVTASVQGHNINIFKIIP-GILG 304 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~----v~~f~aHt~------------~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~-~~~g 304 (779)
+.+..+|.|+|||+++++. +..|..|.. +|.+|+|+|+|++|++++. |+ |+|||+.. +
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~--- 317 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMEN--- 317 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCS---
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCc---
Confidence 4456789999999999887 788999986 9999999999999999998 76 99999975 3
Q ss_pred CCCccCCCCceeEEEEeecCCCc--------c---cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTN--------A---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~--------a---~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.....+..+..... . .+..++|+||+++|++++.||+|+|||+... ....+..|.
T Consensus 318 ---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~ 383 (447)
T 3dw8_B 318 ---------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEASR 383 (447)
T ss_dssp ---------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECCS
T ss_pred ---------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeecc
Confidence 01111222221110 0 1345999999999999999999999999875 445666664
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=167.76 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=81.0
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..+|.|+|||+.+++++.. +.+|..+|.+++|+ +|++|++++.||+ |+|||+..+ ..+..+
T Consensus 215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~--------------~~~~~~ 278 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTG--------------KNLSTF 278 (450)
T ss_dssp EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTC--------------CEEEEE
T ss_pred EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCC--------------cEeeee
Confidence 345678999999999998888 55999999999999 9999999999987 999999875 222333
Q ss_pred ecC-----------------------CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEec
Q 004015 322 QRG-----------------------LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAI 356 (779)
Q Consensus 322 ~rG-----------------------~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl 356 (779)
..+ .....|.+|+|+||+++|++++ .|++|+||++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 211 1123489999999999999999 8999999999
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-15 Score=172.22 Aligned_cols=219 Identities=17% Similarity=0.260 Sum_probs=132.2
Q ss_pred CCEEEEEECCCCcEEEEEe-CCCCEEEEEEc--C-cEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--S-RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~-rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|+|||+.++++++++. +...|.+|+|+ + .+++.+.|++|++||+... +..++..... +.. -...
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~--~h~------~~v~ 521 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGE--GHR------DWVS 521 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTT--SCS------SCEE
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCC--CCC------CcEE
Confidence 3789999999999999887 47889999996 3 4555688999999998654 3444422100 000 0122
Q ss_pred ceeecC----ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 139 PLAVGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 139 piAlgp----RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
.++++| ..|+.++. ...+..|-....+.+. ...++.+ .+...
T Consensus 522 ~~~~~~~~~~~~l~s~s~---------------------------d~~v~vwd~~~~~~~~---~~~~h~~--~v~~v-- 567 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASW---------------------------DKTVKVWNLSNCKLRS---TLAGHTG--YVSTV-- 567 (694)
T ss_dssp EEEECSCSSSCEEEEEET---------------------------TSCEEEEETTTCCEEE---EECCCSS--CEEEE--
T ss_pred EEEEeCCCCcceEEEEeC---------------------------CCeEEEEECCCCcEEE---EEcCCCC--CEEEE--
Confidence 333333 12333221 1112111111100000 0001110 00000
Q ss_pred cccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 215 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 215 ~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
. .+++ | ..++++..||.|+|||+.+++.+..+..| ..|.+++|+|++.+|++++.+ . |+
T Consensus 568 ~-----------~spd----g---~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~~-~-i~ 626 (694)
T 3dm0_A 568 A-----------VSPD----G---SLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEH-G-IK 626 (694)
T ss_dssp E-----------ECTT----S---SEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEETT-E-EE
T ss_pred E-----------EeCC----C---CEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEcCC-C-EE
Confidence 0 0111 1 14567788999999999999998887654 689999999999999988765 3 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeec------------CC-----CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQR------------GL-----TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r------------G~-----t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|||+... ..+..+.. +. ....+.+++|||||++|++|+.||+|+||++.
T Consensus 627 iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 627 IWDLESK--------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTTT--------------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCC--------------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999865 11112110 00 01127899999999999999999999999997
Q ss_pred CC
Q 004015 358 PL 359 (779)
Q Consensus 358 ~~ 359 (779)
.|
T Consensus 693 ~~ 694 (694)
T 3dm0_A 693 RY 694 (694)
T ss_dssp --
T ss_pred CC
Confidence 53
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=158.61 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=82.9
Q ss_pred cCCCCeEEEEEC------------------CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 244 ADNVGMVIVRDI------------------VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 244 ~~~dG~V~VwDl------------------~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
+..+|.|++||+ ..++++..+.+|..+|.+++|+|+|++|++++.||+ |+|||+..+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~---- 234 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK---- 234 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT----
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC----
Confidence 445788899995 467889999999999999999999999999999987 999999865
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+..+. ++ ...|.+++|+||+++|+++ .|++|+||++....+
T Consensus 235 ----------~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~ 277 (372)
T 1k8k_C 235 ----------MAVATLA-SE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAG 277 (372)
T ss_dssp ----------TEEEEEE-CS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTT
T ss_pred ----------ceeEEEc-cC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCc
Confidence 3344443 22 3459999999999999888 999999999987333
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-15 Score=160.66 Aligned_cols=214 Identities=12% Similarity=0.046 Sum_probs=134.4
Q ss_pred CCEEEEEECCCCcEEEEEeC----CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF----RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf----~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
.++|++||+++ ..+..+.. ...|.+++|+ +++|++ +.++.|++||+ +.+++.++..|...
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~----------- 206 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK----------- 206 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSC-----------
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-----------
Confidence 58899999986 55666653 3679999996 556655 67899999999 67888888776421
Q ss_pred cccceeecC--c-eeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 136 GYGPLAVGP--R-WLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 136 ~~~piAlgp--R-wLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
...+++.| + .|+.++.+ +.+|+ ....+....-+..++... .+.
T Consensus 207 -v~~~~~~~~~~~~l~s~~~d~~i~iwd-----------------------------~~~~~~~~~~~~~~~~~~--~v~ 254 (383)
T 3ei3_B 207 -VTHAEFNPRCDWLMATSSVDATVKLWD-----------------------------LRNIKDKNSYIAEMPHEK--PVN 254 (383)
T ss_dssp -EEEEEECSSCTTEEEEEETTSEEEEEE-----------------------------GGGCCSTTCEEEEEECSS--CEE
T ss_pred -EEEEEECCCCCCEEEEEeCCCEEEEEe-----------------------------CCCCCcccceEEEecCCC--ceE
Confidence 22355544 3 45544322 22221 111000000000011100 000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-----------------CCeEE
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----------------SPISA 273 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-----------------~~Isa 273 (779)
.. ...|. . + ..++.+..+|.|+|||+.+++.+..+..|. ..+.+
T Consensus 255 ~~--~~s~~----------~----~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 255 AA--YFNPT----------D----S---TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp EE--EECTT----------T----S---CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred EE--EEcCC----------C----C---CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence 00 00010 1 1 135567789999999999988877777664 34555
Q ss_pred EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEE
Q 004015 274 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 353 (779)
Q Consensus 274 LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhI 353 (779)
++|+|||++ +++.||+ |+|||+.++ ..+..+........+..++|+||+++||+++ ||+|+|
T Consensus 316 ~~~s~dg~~--s~s~d~~-i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 316 AGRYPDDQL--LLNDKRT-IDIYDANSG--------------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EECBCCTTT--CTTCCCC-EEEEETTTC--------------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCccc--ccCCCCe-EEEEecCCC--------------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 778888877 7788988 899999875 3455664322234577789999999999997 999999
Q ss_pred EecCC
Q 004015 354 FAINP 358 (779)
Q Consensus 354 wdl~~ 358 (779)
|+++.
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99974
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=159.49 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=89.0
Q ss_pred cccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||+|+|||+.+++ .+..+.+|..+|.+++|+|+ |.+||+|+.||+ |+|||+.... . ..
T Consensus 71 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~-v~~wd~~~~~-----------~-~~ 137 (297)
T 2pm7_B 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK-VSVVEFKENG-----------T-TS 137 (297)
T ss_dssp EEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEEBCSSS-----------C-BC
T ss_pred EEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc-EEEEEecCCC-----------c-ee
Confidence 345678999999999874 66788899999999999998 999999999997 8999997630 0 00
Q ss_pred EEEeecCCCcccEEEEEEcCC-------------CCEEEEEeCCCeEEEEecCCCCC----ceeeccCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD-------------SNWIMISSSRGTSHLFAINPLGG----SVNFQPTDAN 371 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD-------------g~~LAtgS~DGTVhIwdl~~~gg----~~~~~~H~~~ 371 (779)
...+ .++ ...|.+++|+|+ +++||+|+.|++|+|||+..... ...+.+|...
T Consensus 138 ~~~~-~~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 138 PIII-DAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp CEEE-ECC-SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred eeee-ecc-cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence 1122 233 245999999997 57999999999999999987542 3356677543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-15 Score=152.81 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=137.7
Q ss_pred CEEEEEECCC-CcEE-EEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRS-QSYV-HMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~T-ge~V-~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
++|+|||+.+ ++.+ ..+. +...|.+|+|+ +++|++ +.++.|++||+.+.+.+... .|.. ..
T Consensus 64 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~------------~v 130 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDA------------PV 130 (368)
T ss_dssp SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSS------------CE
T ss_pred CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccC------------ce
Confidence 7799999998 6665 5555 47899999996 555555 67899999999999877644 3322 12
Q ss_pred cceee--cC--ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 138 GPLAV--GP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 138 ~piAl--gp--RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
..+++ .+ ++|+.++.+ +.+|+. ...+.+. -+ ......
T Consensus 131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~-----------------------------~~~~~~~-~~-~~~~~~------ 173 (368)
T 3mmy_A 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDT-----------------------------RSSNPMM-VL-QLPERC------ 173 (368)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEECS-----------------------------SCSSCSE-EE-ECSSCE------
T ss_pred EEEEEEeCCCCCEEEEccCCCcEEEEEC-----------------------------CCCcEEE-EE-ecCCCc------
Confidence 23443 33 345554322 222221 0000000 00 000000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEE-ec-cCCCCeEEEEEcCCCCE----EEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FR-AHKSPISALCFDPSGIL----LVT 285 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~-f~-aHt~~IsaLaFSPdG~l----LAT 285 (779)
++ .. .. ...++.+..++.+.+||+........ +. .+...+.++++.+++.. |++
T Consensus 174 ~~----------~~-~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 174 YC----------AD-VI---------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp EE----------EE-EE---------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred eE----------EE-ec---------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 00 00 00 01223455688999999987654332 22 45567778887776665 999
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc-----------ccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~-----------a~I~sIaFSpDg~~LAtgS~DGTVhIw 354 (779)
++.||. |+|||+..... ...++.+ .++.. ..|.+++|+||+++||+++.||+|+||
T Consensus 234 ~~~dg~-i~i~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 234 GSIEGR-VAIHYINPPNP-----------AKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp EETTSE-EEEEESSCSCH-----------HHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ecCCCc-EEEEecCCCCc-----------cccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 999997 89999986410 0111222 12111 149999999999999999999999999
Q ss_pred ecCCCCCceeeccCCCC
Q 004015 355 AINPLGGSVNFQPTDAN 371 (779)
Q Consensus 355 dl~~~gg~~~~~~H~~~ 371 (779)
|+........+..|...
T Consensus 301 d~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 301 DKDARTKLKTSEQLDQP 317 (368)
T ss_dssp ETTTTEEEEECCCCSSC
T ss_pred ECCCCcEEEEecCCCCC
Confidence 99987666666777443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=179.44 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=144.1
Q ss_pred CEEEEEECC--CCcEEEEEe-CCCCEEEEEEc----CcEEEE-EeCCeEEEEeCCCCc--EEEEEecCCcccCCCCCCCc
Q 004015 64 TVVHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 133 (779)
Q Consensus 64 ~tVrIWDL~--Tge~V~tLk-f~s~V~sV~~s----~rlLaV-s~d~~I~IwD~~T~e--~l~tl~t~p~~~~~p~s~~~ 133 (779)
++|+|||+. +++.+.++. +..+|.+|+|+ +++|++ +.|+.|++||+.+++ .+..+..|...
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~--------- 101 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS--------- 101 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC---------
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC---------
Confidence 679999998 567777776 47899999995 556655 678999999999987 55556554321
Q ss_pred cccccceeecC----ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 134 GIGYGPLAVGP----RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 134 ~~~~~piAlgp----RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
...++++| ++|+.++.+ +.+|+... .+... -....++..
T Consensus 102 ---V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~-----------------------------~~~~~-~~~~~~~~~-- 146 (753)
T 3jro_A 102 ---VNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-----------------------------NGTTS-PIIIDAHAI-- 146 (753)
T ss_dssp ---EEEEEECCGGGCSEEEEEETTSEEEEEECCS-----------------------------SSCCC-CEEEECCSS--
T ss_pred ---eEEEEECCCCCCCEEEEEeCCCcEEEEEeec-----------------------------CCCcc-eeEeecCCC--
Confidence 22344443 355555432 22332110 00000 000000000
Q ss_pred ccccccccccCCC---cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEEcCC-
Q 004015 208 KLSQYCSEFLPDS---QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS- 279 (779)
Q Consensus 208 ~ls~y~~~l~p~~---~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~----~~v~~f~aHt~~IsaLaFSPd- 279 (779)
.+... ...|.. .+.. ...++ ...++.+..+|.|+|||+.++ .++..+.+|..+|.+|+|+|+
T Consensus 147 ~v~~l--~~~p~~~~~~~~~-~~~~d-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 147 GVNSA--SWAPATIEEDGEH-NGTKE-------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp CEEEE--EECCCC----------CGG-------GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred ceEEE--EecCccccccccc-ccCCC-------CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence 00000 000000 0000 00000 124567788999999999877 567888999999999999999
Q ss_pred --CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 280 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 280 --G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|++|++++.||+ |+|||+..+.... ...+.. .......|.+++|+|||++|++++.||+|+||++.
T Consensus 217 ~~~~~l~s~s~Dg~-I~iwd~~~~~~~~---------~~~~~~--~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 217 LLRSYLASVSQDRT-CIIWTQDNEQGPW---------KKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSEEEEEEESSSC-EEEEEESSSSSCC---------BCCBSS--SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCCCEEEEEecCCE-EEEecCCCCCCcc---------eeEEec--cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999998 8999998741000 001111 11123458999999999999999999999999998
Q ss_pred CCCC
Q 004015 358 PLGG 361 (779)
Q Consensus 358 ~~gg 361 (779)
..+.
T Consensus 285 ~~~~ 288 (753)
T 3jro_A 285 LEGK 288 (753)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=164.66 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=74.8
Q ss_pred cCCCCeEEEEECC------------------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 244 ADNVGMVIVRDIV------------------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 244 ~~~dG~V~VwDl~------------------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
+..+|.|+|||+. .++++..+ +|..+|.+++|+|+|++||+++.||+ |+|||+..+..
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~-- 239 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ-- 239 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS--
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC--
Confidence 3456788888874 35577777 99999999999999999999999997 99999987510
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
....+..+ .++ ...|.+++|+||+++|++++.++.+ +|+....
T Consensus 240 --------~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 240 --------PPRALITV-KLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp --------CEEECCCE-ECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCCC-
T ss_pred --------cceeeEee-cCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCC
Confidence 00112233 232 3459999999999999999877666 7877643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=163.59 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=85.4
Q ss_pred ccccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCc-cC------
Q 004015 241 FPDADNVGM-VIVRDIVSKNVIAQFR-A-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-CD------ 310 (779)
Q Consensus 241 ~~s~~~dG~-V~VwDl~s~~~v~~f~-a-Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~-~~------ 310 (779)
++++..||+ |+|||+.+++++.+|. + |..+|.+|+|+|||++||+++.||+ |+|||+.......... ..
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeeccc
Confidence 455677898 9999999999999998 5 9999999999999999999999987 9999997641111000 00
Q ss_pred --CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 311 --AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 311 --~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
..-+ ...+.+..+. ......++|++|+++|++++.||++++|++...+
T Consensus 289 ~~~~~~-~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWS-LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSC-SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccc-eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0000 0112222221 1123579999999999999999999999997643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=159.06 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=84.1
Q ss_pred ccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 243 DADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 243 s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.+..+|.|+|||+++ ..++..+.+|..+|.+|+|+|+|. +||+++.||+ |+|||+...................++.
T Consensus 295 tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEE
Confidence 445689999999998 578899999999999999999995 7999999998 8999997630000000000000123333
Q ss_pred eecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCC
Q 004015 321 LQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~ 358 (779)
+ .++ ...|.+++|+|+++ +|++++.||+|+||++..
T Consensus 374 ~-~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 374 H-GGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp C-CCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred c-CCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3 343 34599999999999 899999999999999964
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-15 Score=156.63 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=85.7
Q ss_pred ccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 243 DADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~--~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
++..||.|+|||+.+++ .+..+..|..+|.+|+|+|+ |.+|++++.||+ |+|||+... .....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~------------~~~~~ 140 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK-VSVVEFKEN------------GTTSP 140 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE-EEEEECCTT------------SCCCE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc-EEEEecCCC------------Cceee
Confidence 44568999999999987 78888999999999999999 999999999997 899999864 01112
Q ss_pred EEeecCCCcccEEEEEEcC-------------CCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 319 YRLQRGLTNAVIQDISFSD-------------DSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSp-------------Dg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
..+. + +...|.+++|+| |+++|++++.||+|+|||+......
T Consensus 141 ~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 141 IIID-A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEE-C-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred EEec-C-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 2222 2 234599999999 7999999999999999999875543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-14 Score=150.68 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=130.5
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEE-EE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLa-Vs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||+.++++++.+.....+.+++|+ ++.|+ ++ .+++|++||+.+++++.++..+.. +
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------------v 76 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---------------P 76 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---------------E
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC---------------c
Confidence 67999999999999999998889999996 55554 43 689999999999998888754310 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
..+++.. +|..+
T Consensus 77 -----~~~~~sp---------------------------dg~~l------------------------------------ 88 (391)
T 1l0q_A 77 -----QGVAVSP---------------------------DGKQV------------------------------------ 88 (391)
T ss_dssp -----EEEEECT---------------------------TSSEE------------------------------------
T ss_pred -----cceEECC---------------------------CCCEE------------------------------------
Confidence 1223321 11111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEeC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL-VTASVQGHNINIFKI 298 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lL-ATaS~DGt~I~Vwdi 298 (779)
++.+..++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.+++ |++||+
T Consensus 89 ---------------------~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~ 145 (391)
T 1l0q_A 89 ---------------------YVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKT-VSVINT 145 (391)
T ss_dssp ---------------------EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE-EEEEET
T ss_pred ---------------------EEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCE-EEEEEC
Confidence 0112345889999999999988887664 68999999999977 67777876 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg 361 (779)
.++ ..+..+..+ ..+.+++|+||+++| ++++.+++|++||+.....
T Consensus 146 ~~~--------------~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 146 VTK--------------AVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp TTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCC--------------cEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 865 333444332 237899999999988 5677889999999987543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=147.45 Aligned_cols=112 Identities=11% Similarity=0.150 Sum_probs=89.2
Q ss_pred cccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEEcCCC--CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 240 HFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSG--ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~-v~~f~aHt~~IsaLaFSPdG--~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.++++..+|.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |++||+... .
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~--------------~ 206 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANC--------------K 206 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTT--------------E
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCC--------------c
Confidence 356677899999999987654 34566999999999999875 57899999998 899999875 3
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.+..+ .++ ...|.+|+|+||+++|++++.||+|+|||+........+..|
T Consensus 207 ~~~~~-~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 207 LKTNH-IGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEEEE-CCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred eeeEe-cCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 34444 343 345999999999999999999999999999887555555544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-15 Score=162.20 Aligned_cols=103 Identities=15% Similarity=0.281 Sum_probs=84.0
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~---~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+.+..+|.|+|||++++ +++..+.+|..+|++|+|+|+|. +||+|+.||+ |+|||+... ...
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~-------------~~~ 313 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL-------------KLK 313 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT-------------TSC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC-------------CCC
Confidence 34567899999999987 67888899999999999999997 7999999997 999999863 011
Q ss_pred EEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~g 360 (779)
+..+. ++ ...|.+|+|+|+++ +||+++.||+|+||++...+
T Consensus 314 ~~~~~-~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 314 LHSFE-SH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SEEEE-CC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred eEEee-cC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 22332 22 34599999999995 69999999999999998744
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-14 Score=148.53 Aligned_cols=183 Identities=14% Similarity=0.158 Sum_probs=133.9
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-E-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-C-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|++||+.+++.++.+.....|..++|+ ++.|++ + .++.|++||+.+++.+..+..+..
T Consensus 53 d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------------- 117 (391)
T 1l0q_A 53 SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--------------- 117 (391)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---------------
T ss_pred CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---------------
Confidence 378999999999999999998899999996 566654 3 358999999999998877754311
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+ ..+++.. +|..+
T Consensus 118 ~-----~~~~~s~---------------------------dg~~l----------------------------------- 130 (391)
T 1l0q_A 118 P-----LGLALSP---------------------------DGKKL----------------------------------- 130 (391)
T ss_dssp E-----EEEEECT---------------------------TSSEE-----------------------------------
T ss_pred c-----ceEEECC---------------------------CCCEE-----------------------------------
Confidence 1 1122221 11111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL-VTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lL-ATaS~DGt~I~Vwd 297 (779)
++.+..++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.+|+ |++||
T Consensus 131 ----------------------~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~-v~~~d 186 (391)
T 1l0q_A 131 ----------------------YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMS-ISVID 186 (391)
T ss_dssp ----------------------EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE-EEEEE
T ss_pred ----------------------EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCE-EEEEE
Confidence 0122356899999999999998888774 56999999999987 56667765 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe---CCCeEEEEecCCCCCceeeccC
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS---SRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS---~DGTVhIwdl~~~gg~~~~~~H 368 (779)
+..+ ..+..+.. ...+.+++|+||+++|++++ .+++|++||+........+..|
T Consensus 187 ~~~~--------------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 187 TVTN--------------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (391)
T ss_dssp TTTT--------------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred CCCC--------------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence 9865 23333322 23488999999999999998 6999999999876444444443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=158.76 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=87.4
Q ss_pred cccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 242 PDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
+++..||+|+|||+.++ ..+..+.+|..+|.+|+|+|+ |.+||+|+.||+ |+|||+... ....
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~-i~lwd~~~~------------~~~~ 141 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA-ISLLTYTGE------------GQWE 141 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC-EEEEEECSS------------SCEE
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC-EEEEecCCC------------CCcc
Confidence 34567899999999987 467788999999999999998 899999999998 899998753 0011
Q ss_pred EEEeecCCCcccEEEEEEcCC-----------------CCEEEEEeCCCeEEEEecCCCC---CceeeccCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDD-----------------SNWIMISSSRGTSHLFAINPLG---GSVNFQPTDA 370 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpD-----------------g~~LAtgS~DGTVhIwdl~~~g---g~~~~~~H~~ 370 (779)
+.....++ ...|.+++|+|+ +++||+++.|++|+||++...+ ....+.+|..
T Consensus 142 ~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 142 VKKINNAH-TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ECCBTTSS-SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred eeeeeccc-cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 11122333 234889999998 4799999999999999996542 2234566754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-15 Score=180.00 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE--Eee---cCCCcccEEEE
Q 004015 259 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY--RLQ---RGLTNAVIQDI 333 (779)
Q Consensus 259 ~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~--~l~---rG~t~a~I~sI 333 (779)
+++..+.+|.++|++|+||||| +||+|+.||+ |+|||+... ..++ .++ .|+ ...|++|
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-v~lwd~~~~--------------~~~~~~~~~~~~~gh-~~~V~sv 628 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-LMLIDRRGP--------------AIIYMENIREISGAQ-SACVTCI 628 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTS-EEEEEETTSE-EEEEETTTT--------------EEEEEEEGGGTCSSC-CCCEEEE
T ss_pred ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-EEEEECCCC--------------eEEEEeehhHhcccc-ccceEEE
Confidence 4678899999999999999999 9999999997 899998754 2233 231 133 3459999
Q ss_pred EEc-----CCC---CEEEEEeCCCeEEEEec---CCCCCceeeccC
Q 004015 334 SFS-----DDS---NWIMISSSRGTSHLFAI---NPLGGSVNFQPT 368 (779)
Q Consensus 334 aFS-----pDg---~~LAtgS~DGTVhIwdl---~~~gg~~~~~~H 368 (779)
+|| ||| ++|++|+.|++|++|++ ..+.....+.+|
T Consensus 629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 999 885 89999999999999999 555445566665
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=145.99 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=85.1
Q ss_pred ccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCCEEEEEeCCCCCCCCCC----
Q 004015 243 DADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSS---- 307 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~---------~~v~~f~aHt~~IsaLaFSPd--G~lLATaS~DGt~I~Vwdi~~~~~g~~s---- 307 (779)
.+..||.|+|||+.++ +++..+..|..+|.+|+|+|+ |.+|++++.||+ |+|||+.....-..-
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI-LRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE-EEEEECSSTTCTTCCEEEE
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc-EEEecCCChHHhccccccc
Confidence 3456899999999887 668889999999999999999 999999999997 899998764210000
Q ss_pred ---------------------------c-----cC----------CCCceeEEEEeecCCCcccEEEEEEcCCC----CE
Q 004015 308 ---------------------------A-----CD----------AGTSYVHLYRLQRGLTNAVIQDISFSDDS----NW 341 (779)
Q Consensus 308 ---------------------------~-----~~----------~~~s~~~l~~l~rG~t~a~I~sIaFSpDg----~~ 341 (779)
. +. .......+..+ .++ ...|.+++|+|++ ++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGH-KSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCC-CSCEEEEEECCCSSCSSEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCC-CcceeEEEECCCCCCcceE
Confidence 0 00 00001112222 222 3459999999998 89
Q ss_pred EEEEeCCCeEEEEecCCCCC
Q 004015 342 IMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~gg 361 (779)
|++++.||+|+|||+.....
T Consensus 233 l~s~~~dg~i~iwd~~~~~~ 252 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLS 252 (351)
T ss_dssp EEEEETTSCEEEEEEEECC-
T ss_pred EEEEcCCCeEEEEeCCCCcC
Confidence 99999999999999987543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-14 Score=164.19 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=146.5
Q ss_pred CEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCC-cEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~-e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
++|++||+.+++.+.++. +...|.+++|+ +++|++ +.++.|++||+.+. .+...+..|... ..
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~------------v~ 144 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF------------VM 144 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC------------EE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc------------EE
Confidence 779999999999999998 57889999996 455555 67889999999987 666677665321 22
Q ss_pred ceeecC---ceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccc
Q 004015 139 PLAVGP---RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 213 (779)
Q Consensus 139 piAlgp---RwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~ 213 (779)
.++++| .+|+.++.+ +.+|+.. ..+... ....+... .+. +
T Consensus 145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~-----------------------------~~~~~~--~~~~~~~~--~v~--~ 189 (814)
T 3mkq_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLG-----------------------------QSTPNF--TLTTGQER--GVN--Y 189 (814)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETT-----------------------------CSSCSE--EEECCCTT--CCC--E
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECC-----------------------------CCccee--EEecCCCC--CEE--E
Confidence 344443 455555322 2222210 000000 00000000 000 0
Q ss_pred ccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 214 ~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
-...|. ++ ...++.+..+|.|++||+.+++++..+.+|..+|++++|+|+|.+|++++.||+ |
T Consensus 190 ~~~~~~---------~~-------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v 252 (814)
T 3mkq_A 190 VDYYPL---------PD-------KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-L 252 (814)
T ss_dssp EEECCS---------TT-------CCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-E
T ss_pred EEEEEC---------CC-------CCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-E
Confidence 000000 00 113556778999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC--EEEEEeCCCeEEEEecCCCCCceee
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN--WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
+|||+.++ ..+..+... ...|++++|+|+++ +++++ .|+.+.+|++........+
T Consensus 253 ~vwd~~~~--------------~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (814)
T 3mkq_A 253 KIWNSSTY--------------KVEKTLNVG--LERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSL 309 (814)
T ss_dssp EEEETTTC--------------SEEEEECCS--SSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEE
T ss_pred EEEECCCC--------------cEEEEeecC--CCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEE
Confidence 99999865 344454332 24599999999998 45555 4677889998765544444
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=157.24 Aligned_cols=237 Identities=9% Similarity=0.021 Sum_probs=120.8
Q ss_pred CCCEEEEEECCCCcEEEEEe------CCCCEEEEEEc----------CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcc
Q 004015 62 VPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS----------SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 124 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLk------f~s~V~sV~~s----------~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~ 124 (779)
..++|+|||+++++...... +...|.+|+|+ +++||. +.|++|+|||+.+..++..+..+..+
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 35889999999998765322 36789999995 356665 78999999999998888887766432
Q ss_pred cCCCCCCCccccccceeecC---ceeEeeCCC--ceecCC--CccCCcccccccccccccCCCcceeeeecccccchhce
Q 004015 125 MGHPSAGGIGIGYGPLAVGP---RWLAYSGSP--VVVSND--GRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 197 (779)
Q Consensus 125 ~~~p~s~~~~~~~~piAlgp---RwLAyas~~--~i~~~s--grvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G 197 (779)
. ..+++.| +.|+.++.+ +.+|+. +..... +... ... .......... ..+...
T Consensus 189 v------------~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~-~~~~----~~~-~~~~~~s~~~---~~~~~~ 247 (393)
T 4gq1_A 189 G------------ISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE-NSQT----ELV-KNPWLLTLNT---LPLVNT 247 (393)
T ss_dssp E------------EEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------C-SCCCSEEEES---GGGC--
T ss_pred c------------EEEEECCCCCceEEecCCCCEEEEEECCCCccccc-cccc----CCc-ccceEEeccc---ccceee
Confidence 1 1345544 456666443 334432 110000 0000 000 0000000000 000000
Q ss_pred eeecCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc
Q 004015 198 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 277 (779)
Q Consensus 198 l~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFS 277 (779)
....+... ....+....++ ...++.+..++.|+|||+..+.....+..|...+..+.|.
T Consensus 248 ~~~~~~~~--------------~v~~v~~~~~d-------g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 248 CHSSGIAS--------------SLANVRWIGSD-------GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----CCSS--------------SCSEEEEETTT-------TCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred eecccccc--------------cceeeeeecCC-------CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 00000000 00000000011 1135667789999999999888777777777766665555
Q ss_pred C--------------------CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 278 P--------------------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 278 P--------------------dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
| ++.++++++.||+ |+|||+.++ ..+..+..+ ...|.+++|||
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~--------------~~~~~~~~~--~~~V~svafsp 369 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTYEK--------------DSNSIPIQL--GMPIVDFCWHQ 369 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETTCT--------------TCCEEEEEC--SSCEEEEEECT
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECCCC--------------cEEEEecCC--CCcEEEEEEcC
Confidence 4 3447788889987 999999875 111222222 23599999999
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 004015 338 DSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~ 358 (779)
||++||+++.+| +.||++..
T Consensus 370 dG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 370 DGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp TSSEEEEEESSE-EEEEEEGG
T ss_pred CCCEEEEEeCCC-eEEEEEeC
Confidence 999999998766 66666643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-13 Score=139.66 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=139.5
Q ss_pred cEEEEEeC-CCCEEEEEEc-CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEe
Q 004015 75 SYVHMLKF-RSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAY 149 (779)
Q Consensus 75 e~V~tLkf-~s~V~sV~~s-~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAy 149 (779)
+.+++++. ...|.+|+|. +++|++ +.++.|++||+.+.+....+..+... ...++++| ++|+.
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~------------v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF------------LNSVCYDSEKELLLF 76 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC------------EEEEEEETTTTEEEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc------------EEEEEECCCCCEEEE
Confidence 66677764 6789999994 555554 67899999999999988888776321 22344444 55665
Q ss_pred eCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccc
Q 004015 150 SGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSA 227 (779)
Q Consensus 150 as~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa 227 (779)
++.+ +..|+.-.. ..+..+.. ..++. ..+...
T Consensus 77 ~~~dg~i~~~~~~~~---------------~~~~~~~~--------------~~~~~-----------------~~i~~~ 110 (313)
T 3odt_A 77 GGKDTMINGVPLFAT---------------SGEDPLYT--------------LIGHQ-----------------GNVCSL 110 (313)
T ss_dssp EETTSCEEEEETTCC---------------TTSCC-CE--------------ECCCS-----------------SCEEEE
T ss_pred ecCCCeEEEEEeeec---------------CCCCcccc--------------hhhcc-----------------cCEEEE
Confidence 5432 111110000 00000000 00000 000000
Q ss_pred cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCC
Q 004015 228 IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTS 306 (779)
Q Consensus 228 ~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~ 306 (779)
... ...++.+..+|.|++|| .++.+..+..|..+|.+++|+| ++.+|++++.||. |++||...
T Consensus 111 ~~~-------~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~------ 174 (313)
T 3odt_A 111 SFQ-------DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT-IKLWQNDK------ 174 (313)
T ss_dssp EEE-------TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC-EEEEETTE------
T ss_pred Eec-------CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC-EEEEecCc------
Confidence 000 12356677899999999 7788899999999999999998 9999999999998 89999432
Q ss_pred CccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 307 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 307 s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
.+..+ .+.....|.+++|+|+++ |++++.||+|+|||+........+..|...
T Consensus 175 ----------~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 175 ----------VIKTF-SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp ----------EEEEE-CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ----------eEEEE-eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce
Confidence 23333 332345699999999999 999999999999999987766677777543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-14 Score=152.04 Aligned_cols=114 Identities=6% Similarity=0.114 Sum_probs=84.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCC---CCeEEEEEcCCCCEE------------EEEeCCCCEEEEEeCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFRAHK---SPISALCFDPSGILL------------VTASVQGHNINIFKIIPGILG 304 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~aHt---~~IsaLaFSPdG~lL------------ATaS~DGt~I~Vwdi~~~~~g 304 (779)
.++++..|++|+|||+.+++++.+|.+|. ..+.+++|+|||++| ++|+.|++ |++||..++
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tg--- 270 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTT--- 270 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTT---
T ss_pred eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCC---
Confidence 35667889999999999999999999754 468888999999987 56778876 899998765
Q ss_pred CCCccCCCCceeEEEEe----ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 305 TSSACDAGTSYVHLYRL----QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l----~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
..+..+ ..|+.. .+.+.+|+ +.++|+++.|+||+|||+.+.....++.+|.+.
T Consensus 271 -----------k~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 271 -----------LSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp -----------EEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred -----------EEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 232222 234332 24455555 889999999999999999998878888888543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=165.42 Aligned_cols=225 Identities=12% Similarity=0.108 Sum_probs=130.1
Q ss_pred cccCCCCeEEEEECCCCc-------EEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 242 PDADNVGMVIVRDIVSKN-------VIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~-------~v~~f----~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
+.+..||+|+|||+.++. .+.+| .+|...|.+++|+||| ||+++.|++ |++||+....
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~-------- 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASS-------- 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSS--------
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCc--------
Confidence 345678999999999885 36777 6788899999999999 788888887 8999997640
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCCccCCCcCCcceecCCCC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL 390 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~r~~~~s 390 (779)
......++..++ ...|.+++|+ |++||+++ +++|++|++..........+|...+. .+.++.
T Consensus 214 ---~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~---------~va~~~-- 275 (588)
T 2j04_A 214 ---HQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH---------IIPLNH-- 275 (588)
T ss_dssp ---SCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC---------EEEETT--
T ss_pred ---cccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE---------EEEeee--
Confidence 001122343333 3459999999 68999997 69999999986433222236754443 123311
Q ss_pred CCCCCCCCccccCCCCeeeeeeEEeecCCCCCCCcccCccccccCCcCCCCCceeeeeeccCCCCcccccCCcccccccE
Q 004015 391 GLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHL 470 (779)
Q Consensus 391 ~l~~~~~~~l~~~~pp~~ls~v~ri~~~~~~~~~~v~~~a~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 470 (779)
.++.+.|.....- -. |+...+ ..+.+++|....-. .-.....+-.++.....++ ...-+=
T Consensus 276 ---s~d~~~La~a~ed----G~-klw~~d--------~~~~spd~~l~a~~-d~~v~lW~~~g~~l~~~~~---~~~I~~ 335 (588)
T 2j04_A 276 ---EKESTILLMSNKT----SY-KVLLED--------ELHVTADNIIAPYL-EKKFKKWSTIWNEFNNYET---TLVIHG 335 (588)
T ss_dssp ---CSSCEEEEECSSC----EE-EEEESS--------SEEEECCCSSHHHH-HHHHHHTTTTTTSSSSSCC---EEEEEE
T ss_pred ---CCCCCEEEEEcCC----CC-EEEeec--------cEEECCCceEEEEc-CCEEEEEECCCCceeeecc---ceEEEE
Confidence 1233333211100 00 122211 12344444331100 0001111221111000001 122233
Q ss_pred EEEccCccEEE--EeeeeccCCCccCCcCCCCCCCCCCCCCCceEEEeee-ccccccccC
Q 004015 471 LVFSPSGCMIQ--YALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAI-QKWNICQKQ 527 (779)
Q Consensus 471 ~V~~p~G~liq--y~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Vep~-~~Wdvcr~~ 527 (779)
+.++|+|+++- |++ |.. ..-|.-.-+.++++...|. .+|.+..+.
T Consensus 336 va~SPdG~~lA~~~~i-~~~-----------~~~y~i~s~~~~~i~f~pL~~~w~~~~~~ 383 (588)
T 2j04_A 336 ISLSPDGYSIAIVYDM-ERV-----------AFKYKIASEQSFNIMFAPLYHTWTISERA 383 (588)
T ss_dssp EEECTTSSEEEEEEEE-ECS-----------SCCCCCSSSCCEEEEEEESSSCCCCCTTC
T ss_pred EEECCCCCEEEEEEec-cCc-----------eeEEeeccceEEEEEEEEccchhccCCCc
Confidence 67899997765 998 772 4455556778899999998 788887443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=149.18 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=126.7
Q ss_pred CCEEEEEECCC---------CcEEEEEeCCCCEEEEEEcCcEEE-EEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRS---------QSYVHMLKFRSPIYSVRCSSRVVA-ICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~T---------ge~V~tLkf~s~V~sV~~s~rlLa-Vs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|++||+++ +++++++.+...|.+++|++..++ .+.++.|++||+.+ ++.......... .
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~--- 193 (342)
T 1yfq_A 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL----K--- 193 (342)
T ss_dssp TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC----S---
T ss_pred CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCC----C---
Confidence 57899999998 888888888899999999855455 46788999999998 654222211100 0
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.++ +.+++. |. ++.
T Consensus 194 ------~~i----~~i~~~-------------~~-------------~~~------------------------------ 207 (342)
T 1yfq_A 194 ------YQI----RDVALL-------------PK-------------EQE------------------------------ 207 (342)
T ss_dssp ------SCE----EEEEEC-------------SG-------------GGC------------------------------
T ss_pred ------Cce----eEEEEC-------------CC-------------CCC------------------------------
Confidence 000 111221 00 000
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCC------cEEEEeccCCC---------CeEEEEE
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKS---------PISALCF 276 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~------~~v~~f~aHt~---------~IsaLaF 276 (779)
.++.+..+|.|+|||+... +.+..|++|.. +|.+++|
T Consensus 208 ----------------------------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 208 ----------------------------GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp ----------------------------EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred ----------------------------EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE
Confidence 1223456789999999887 78889998866 9999999
Q ss_pred cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCe-EEEEe
Q 004015 277 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT-SHLFA 355 (779)
Q Consensus 277 SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGT-VhIwd 355 (779)
+|+|++|++++.||+ |+|||+..+ ..+..+ .+++...|.+++ ||+++|++++.||+ .+.|.
T Consensus 260 s~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGI-ISCWNLQTR--------------KKIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTTCCEEEEETTSC-EEEEETTTT--------------EEEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cCCCCEEEEecCCce-EEEEcCccH--------------hHhhhh-hcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 999999999999998 899999875 445555 343245699999 99999999999999 66555
Q ss_pred c
Q 004015 356 I 356 (779)
Q Consensus 356 l 356 (779)
.
T Consensus 322 ~ 322 (342)
T 1yfq_A 322 I 322 (342)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-13 Score=145.27 Aligned_cols=173 Identities=10% Similarity=0.117 Sum_probs=128.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe---------CCeEEEEeCCCCcEEEEEecCCcccCCCCCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ---------AAQVHCFDAATLEIEYAILTNPIVMGHPSAG 131 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~---------d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~ 131 (779)
.++|++||+++++.+..+.....+..++++ +++|+++. +++|++||+.+++.+..+... .
T Consensus 233 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~-------- 303 (433)
T 3bws_A 233 SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-G-------- 303 (433)
T ss_dssp TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-E--------
T ss_pred CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-C--------
Confidence 368999999999999999888889999996 55666543 679999999998876665211 0
Q ss_pred CccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccc
Q 004015 132 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 211 (779)
Q Consensus 132 ~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~ 211 (779)
.++.+++.. +|..+
T Consensus 304 -----------~~~~~~~~~---------------------------~g~~l---------------------------- 317 (433)
T 3bws_A 304 -----------NKRHIVSGN---------------------------TENKI---------------------------- 317 (433)
T ss_dssp -----------CEEEEEECS---------------------------STTEE----------------------------
T ss_pred -----------CcceEEECC---------------------------CCCEE----------------------------
Confidence 011223321 11110
Q ss_pred ccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---
Q 004015 212 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV--- 288 (779)
Q Consensus 212 y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~--- 288 (779)
++.+..+|.|++||+.+++++..+. |...+.+++|+|+|++|++++.
T Consensus 318 -----------------------------~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 318 -----------------------------YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp -----------------------------EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC
T ss_pred -----------------------------EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC
Confidence 1122456899999999999888876 6788999999999999988887
Q ss_pred ------------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 004015 289 ------------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFA 355 (779)
Q Consensus 289 ------------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwd 355 (779)
||+ |.+||+.++ ..+..+..+ ..+.+++|+|||++|++++. |++|+||+
T Consensus 368 ~~~~~~~~~g~~dg~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 368 HPTEGYLKKGLVLGK-VYVIDTTTD--------------TVKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CTTTCTTSCCSSCCE-EEEEETTTT--------------EEEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred ccccccccccccceE-EEEEECCCC--------------cEEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 355 999999765 333444322 35899999999999998875 99999999
Q ss_pred cCC
Q 004015 356 INP 358 (779)
Q Consensus 356 l~~ 358 (779)
+..
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=152.68 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=131.1
Q ss_pred EEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccceeecC--ceeEeeCCC--ceecCCCcc
Q 004015 88 SVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRV 162 (779)
Q Consensus 88 sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~--~i~~~sgrv 162 (779)
-|.|+ .++|||++|++|+|||+.|++++..+..+... -.+..++++| ++||.++.+ +.+|+
T Consensus 110 ~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~----------~~V~sv~fspdg~~lasgs~Dg~v~iWd---- 175 (420)
T 4gga_A 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPG----------EYISSVAWIKEGNYLAVGTSSAEVQLWD---- 175 (420)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTT----------CCEEEEEECTTSSEEEEEETTSCEEEEE----
T ss_pred eEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCC----------CcEEEEEECCCCCEEEEEECCCeEEEEE----
Confidence 47775 67999999999999999999998887643210 0133466655 677766432 22332
Q ss_pred CCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCCcCccccccCCCCCCCccCCccc
Q 004015 163 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 242 (779)
Q Consensus 163 spq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~ 242 (779)
....+.+.. ..++... +..+..+ ...++
T Consensus 176 -------------------------~~~~~~~~~---~~~h~~~------v~~~s~~------------------~~~l~ 203 (420)
T 4gga_A 176 -------------------------VQQQKRLRN---MTSHSAR------VGSLSWN------------------SYILS 203 (420)
T ss_dssp -------------------------TTTTEEEEE---ECCCSSC------EEEEEEE------------------TTEEE
T ss_pred -------------------------cCCCcEEEE---EeCCCCc------eEEEeeC------------------CCEEE
Confidence 111111100 0011000 0000000 01345
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 243 DADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++..++.+++||.... ..+..+.+|...+..+.|+|+|++|++++.||. |+||++..+... ...+...
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~-v~i~~~~~~~~~----------~~~~~~~ 272 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VNVWPSAPGEGG----------WVPLQTF 272 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEESSCCSSC----------SCCSEEE
T ss_pred EEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc-ceEEeecccccc----------ceeeeee
Confidence 6778999999999864 567889999999999999999999999999998 899999865110 1111222
Q ss_pred ecCCCcccEEEEEEcCCCC-EEEE--EeCCCeEEEEecCCCCCceeeccCC
Q 004015 322 QRGLTNAVIQDISFSDDSN-WIMI--SSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~-~LAt--gS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
.+ ..+.|.+++|+|++. ++++ |+.|++|+|||+.+......+..|.
T Consensus 273 -~~-~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~ 321 (420)
T 4gga_A 273 -TQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321 (420)
T ss_dssp -CC-CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred -cc-cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence 22 234599999999665 5554 4579999999999876666666553
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=134.44 Aligned_cols=132 Identities=11% Similarity=0.240 Sum_probs=93.7
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCC----------C--
Q 004015 241 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS----------S-- 307 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~-~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~----------s-- 307 (779)
++.+..++.+++|+.... ..+..+.+|...+.+++|+++|++|++++.||+ |+|||+.++..... .
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~ 200 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VNVWPSAPGEGGWVPLQTFTQHQGAVK 200 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-eeEEECCCCcccccceeeecccCCceE
Confidence 456678899999998875 567788999999999999999999999999998 89999976421000 0
Q ss_pred -----c---------cCCCCceeEEEEeecC------CCcccEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCCCceee
Q 004015 308 -----A---------CDAGTSYVHLYRLQRG------LTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 308 -----~---------~~~~~s~~~l~~l~rG------~t~a~I~sIaFSpDg~~LAtgS--~DGTVhIwdl~~~gg~~~~ 365 (779)
. .+.......++....+ .....|..++|+|+++++++++ .|++|+|||+.+......+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l 280 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 0 0000001112221111 1123478999999999988765 7999999999988777788
Q ss_pred ccCCCCCC
Q 004015 366 QPTDANFT 373 (779)
Q Consensus 366 ~~H~~~~~ 373 (779)
++|...+.
T Consensus 281 ~gH~~~V~ 288 (318)
T 4ggc_A 281 KGHTSRVL 288 (318)
T ss_dssp CCCSSCEE
T ss_pred cCCCCCEE
Confidence 88865443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=151.31 Aligned_cols=106 Identities=13% Similarity=0.206 Sum_probs=80.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~a--Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++++.||+|+|||+.++........ +...+.+++|+|+|++||+|+.||+ |+|||+... .+.
T Consensus 181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~-i~~wd~~~~---------------~~~ 244 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN-VILLNMDGK---------------ELW 244 (435)
T ss_dssp EEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB-EEEEESSSC---------------BCC
T ss_pred EEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc-EeeeccCcc---------------eeE
Confidence 3456789999999987654433333 3456889999999999999999998 899998642 122
Q ss_pred EeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCceee
Q 004015 320 RLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.+ +++ ...|.+|+|+|+++ +|++++.|++|+|||+........+
T Consensus 245 ~~-~~h-~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 245 NL-RMH-KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp CS-BCC-SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred EE-ecc-cceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence 33 233 34599999999987 7889999999999999876655443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-12 Score=127.55 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=135.6
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCccccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..+|++||+.+++....+.+...|.+++|+ +++|+++.++.|++||+.+ ++....+..+.. .....
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~ 89 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----------ICNND 89 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----------CBCSC
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----------ccccc
Confidence 478999999999988878888999999996 7788888899999999999 776544433210 01223
Q ss_pred eeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
++++| ++|++..... ++ ....|..+..... ...+.... . .+.-.+.
T Consensus 90 ~~~spdg~~l~~~~~~~------------------------~~-~~~l~~~~~~~~~---~~~~~~~~--~--~~~~~~s 137 (297)
T 2ojh_A 90 HGISPDGALYAISDKVE------------------------FG-KSAIYLLPSTGGT---PRLMTKNL--P--SYWHGWS 137 (297)
T ss_dssp CEECTTSSEEEEEECTT------------------------TS-SCEEEEEETTCCC---CEECCSSS--S--EEEEEEC
T ss_pred eEECCCCCEEEEEEeCC------------------------CC-cceEEEEECCCCc---eEEeecCC--C--ccceEEC
Confidence 45554 6777764110 00 0000111100000 00000000 0 0000111
Q ss_pred CCCcCccccccCCCCCCCccCCccc-ccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFP-DADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~-s~~~dG~V~VwDl~s-~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~ 294 (779)
|++ ..++ ....++.++||++.. ......+..|...+.+++|+|+|++|+.++. ++. ++
T Consensus 138 pdg------------------~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~ 198 (297)
T 2ojh_A 138 PDG------------------KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQ 198 (297)
T ss_dssp TTS------------------SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CE
T ss_pred CCC------------------CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCC-cc
Confidence 111 0122 345678888988532 2345677788899999999999998887664 766 89
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-----------CeEEEEecCCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-----------GTSHLFAINPLG 360 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-----------GTVhIwdl~~~g 360 (779)
||++... + ..+..+... ...+.+++|+|||++|++++.+ +.+++|++....
T Consensus 199 i~~~~~~--~-----------~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 199 IWRVRVD--G-----------SSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEETT--S-----------SCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred EEEECCC--C-----------CCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 9988632 0 112233221 2358899999999999999876 569999997643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-12 Score=137.51 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=128.9
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEE-EEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVV-AIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlL-aVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|++||+++++.+.++.. ...+..++|+ ++.+ +++ .++.|++||+.+++.+..+.... ..
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~ 256 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-------------LP 256 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-------------EE
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-------------Cc
Confidence 47899999999999999975 6789999996 4555 444 57899999999998877664321 01
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
..+++.. +|..+.......
T Consensus 257 -------~~~~~~~---------------------------~g~~l~~~~~~~--------------------------- 275 (433)
T 3bws_A 257 -------RGLLLSK---------------------------DGKELYIAQFSA--------------------------- 275 (433)
T ss_dssp -------EEEEECT---------------------------TSSEEEEEEEES---------------------------
T ss_pred -------eEEEEcC---------------------------CCCEEEEEECCC---------------------------
Confidence 1122221 121111000000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCCEEEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIF 296 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~-lLATaS~DGt~I~Vw 296 (779)
+ .+ ...+|.|++||+.+++.+..+ .|...+.+++|+|+|+ ++++++.+++ |++|
T Consensus 276 -----------------~----~~--~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~ 330 (433)
T 3bws_A 276 -----------------S----NQ--ESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSK-IEVY 330 (433)
T ss_dssp -----------------C----TT--CSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTE-EEEE
T ss_pred -----------------C----cc--ccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCE-EEEE
Confidence 0 00 025789999999998877665 5666899999999997 4566677876 9999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeC---------------CCeEEEEecCCCCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS---------------RGTSHLFAINPLGG 361 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~---------------DGTVhIwdl~~~gg 361 (779)
|+..+ ..+..+.. ...+.+++|+||+++|++++. ||+|++||+.+...
T Consensus 331 d~~~~--------------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 331 DLKEK--------------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp ETTTT--------------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred ECCCC--------------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 99865 33334432 234899999999999999887 57999999987543
Q ss_pred ceee
Q 004015 362 SVNF 365 (779)
Q Consensus 362 ~~~~ 365 (779)
...+
T Consensus 394 ~~~~ 397 (433)
T 3bws_A 394 KEFW 397 (433)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3333
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.1e-13 Score=156.54 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=87.0
Q ss_pred cccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEEcC-------------CCCEEEEEeCCCCEEEEEeCCCCCCC
Q 004015 240 HFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SGILLVTASVQGHNINIFKIIPGILG 304 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSP-------------dG~lLATaS~DGt~I~Vwdi~~~~~g 304 (779)
.++.+..+|.|+|||+.++ .....+.+|...|.+++|+| +|.+|++|+.||+ |+|||+..+.
T Consensus 115 ~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~-- 191 (753)
T 3jro_A 115 LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDA-- 191 (753)
T ss_dssp EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC-EEEEEEETTT--
T ss_pred EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCc--
Confidence 3566788999999999987 34556789999999999999 5999999999998 8999997640
Q ss_pred CCCccCCCCceeEEEEeecCCCcccEEEEEEcCC---CCEEEEEeCCCeEEEEecCCCC
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD---g~~LAtgS~DGTVhIwdl~~~g 360 (779)
.....+..+ .++ ...|.+++|+|+ +++|++++.||+|+||++....
T Consensus 192 --------~~~~~~~~~-~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 192 --------QTYVLESTL-EGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp --------TEEEEEEEE-CCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred --------ccceeeeee-cCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 011233333 333 346999999999 9999999999999999998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-11 Score=125.35 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=138.9
Q ss_pred CEEEEEECCCCcEEEEEeCCC------CEEEEEEc--CcEEEEE-------------eCCeEEEEeCCCCcEEEEEecCC
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAIC-------------QAAQVHCFDAATLEIEYAILTNP 122 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s------~V~sV~~s--~rlLaVs-------------~d~~I~IwD~~T~e~l~tl~t~p 122 (779)
+.|.+||+.+++.+.++.+.. .+..++++ ++.|+++ .++.|++||+.+++.+..+....
T Consensus 56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 135 (337)
T 1pby_B 56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR 135 (337)
T ss_dssp TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS
T ss_pred CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC
Confidence 679999999999999998754 67788996 6677766 46899999999999887775421
Q ss_pred cccCCCCCCCccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeee
Q 004015 123 IVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 200 (779)
Q Consensus 123 ~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~ 200 (779)
....++++| ++|++++..+.+++... +..+... .
T Consensus 136 -------------~~~~~~~s~dg~~l~~~~~~i~~~d~~~------------------~~~~~~~-------------~ 171 (337)
T 1pby_B 136 -------------QITMLAWARDGSKLYGLGRDLHVMDPEA------------------GTLVEDK-------------P 171 (337)
T ss_dssp -------------SCCCEEECTTSSCEEEESSSEEEEETTT------------------TEEEEEE-------------C
T ss_pred -------------CcceeEECCCCCEEEEeCCeEEEEECCC------------------CcEeeee-------------e
Confidence 112345554 66776644444332110 0000000 0
Q ss_pred cCCccccccccccccccCCCcCccccccCCCCCCCcc----------C-CcccccCCCCeEEEEECCCCcEE-EEeccCC
Q 004015 201 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV----------N-GHFPDADNVGMVIVRDIVSKNVI-AQFRAHK 268 (779)
Q Consensus 201 lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v----------~-g~~~s~~~dG~V~VwDl~s~~~v-~~f~aHt 268 (779)
.+... ..+ ...|++.. +...... .+.+ . .... ......|.+||+.+++.. ..+..|.
T Consensus 172 ~~~~~-~~~-----~~s~dg~~-l~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~ 240 (337)
T 1pby_B 172 IQSWE-AET-----YAQPDVLA-VWNQHES---SGVMATPFYTARKDIDPADP-TAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp STTTT-TTT-----BCCCBCCC-CCCCCTT---TTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred ccccC-CCc-----eeCCCccE-EeeeccC---CCceeeeeeccccccccccc-cccccceEEEeCCCCCceEeecCCCC
Confidence 00000 000 00011000 0000000 0000 0 0000 011226899999998764 3345777
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
..+.+++|+|||++|+++ +++ |.+||+..+ ..+..+..+ ..+.+++|+|||++|++++.+
T Consensus 241 ~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA--YNV-LESFDLEKN--------------ASIKRVPLP---HSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCCCEEEECTTSCEEEEESBS
T ss_pred CceeeEEECCCCCEEEEe--CCe-EEEEECCCC--------------cCcceecCC---CceeeEEECCCCCEEEEEcCC
Confidence 789999999999999988 455 999998765 333333322 247899999999999999999
Q ss_pred CeEEEEecCCCCCceeecc
Q 004015 349 GTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~~ 367 (779)
++|+|||+.+......+..
T Consensus 301 ~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECcCCcEEEEEEc
Confidence 9999999988755555543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-12 Score=137.64 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=76.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-G-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+||+.+++. ..+..|...+.+++|||||++|++++.+ | ..|.+||+..+ . +..+..+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------------~-~~~l~~~-- 353 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------------G-VQVLSST-- 353 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------------C-EEECCCS--
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------------C-EEEecCC--
Confidence 678889988764 4566777889999999999999988865 2 35899998865 1 1233222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCC---eEEEEecCCCCCceeeccCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRG---TSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~~~gg~~~~~~H~~ 370 (779)
..+.+++|+|||++|++++.|+ .+++|++. .+....+..|..
T Consensus 354 -~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~ 398 (415)
T 2hqs_A 354 -FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG 398 (415)
T ss_dssp -SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSS
T ss_pred -CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCC
Confidence 2588999999999999999887 79999986 444556666643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=149.56 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCCCeEEEEECCCCcE---EEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 245 DNVGMVIVRDIVSKNV---IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~---v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..|+.|++||+.++.. ..+++ +|...|.+|+|+ |++||+++ +|+ |++||+..+ .+..
T Consensus 199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~---------------~~~~ 259 (588)
T 2j04_A 199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNY---------------SISS 259 (588)
T ss_dssp ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTT---------------EEEE
T ss_pred eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCC---------------eEEE
Confidence 4578999999998773 45674 899999999999 79999998 565 999999865 2223
Q ss_pred eecCCCcccEEEEEE--cCCCCEEEEEeCCCeEEEEecC
Q 004015 321 LQRGLTNAVIQDISF--SDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaF--SpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+..|+ .+.|++|+| |||++.|++++.||+ +||.+.
T Consensus 260 ~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 260 LKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 33363 456999999 999999999999999 999997
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=125.89 Aligned_cols=223 Identities=9% Similarity=0.094 Sum_probs=130.8
Q ss_pred CEEEEEECCCCcE-EEEEeCCCCEEE-EEEc--CcEEEEEeCC----eEEEEeCCCCcEEEEEecCCcccCCCCCCCccc
Q 004015 64 TVVHFYSLRSQSY-VHMLKFRSPIYS-VRCS--SRVVAICQAA----QVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 135 (779)
Q Consensus 64 ~tVrIWDL~Tge~-V~tLkf~s~V~s-V~~s--~rlLaVs~d~----~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~ 135 (779)
+.|.+||+.+++. +..+........ ++|+ +++|+++... +|++||+.+++.+..+.....
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------------ 129 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD------------ 129 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT------------
T ss_pred CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC------------
Confidence 5899999999998 777776555555 8886 6677676555 899999999998887754311
Q ss_pred cccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhce-eeecCCccccccccc
Q 004015 136 GYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG-IVNLGDLGYKKLSQY 212 (779)
Q Consensus 136 ~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~G-l~~lGd~~~~~ls~y 212 (779)
...++++| ++|.++... .+..+..|..+....+... ...+
T Consensus 130 -~~~~~~spdg~~l~~~~~~-------------------------~~~~i~~~~~~~~g~~~~~~~~~~----------- 172 (331)
T 3u4y_A 130 -AVGIAISPNGNGLILIDRS-------------------------SANTVRRFKIDADGVLFDTGQEFI----------- 172 (331)
T ss_dssp -EEEEEECTTSSCEEEEEET-------------------------TTTEEEEEEECTTCCEEEEEEEEE-----------
T ss_pred -ccceEECCCCCEEEEEecC-------------------------CCceEEEEEECCCCcEeecCCccc-----------
Confidence 12355554 344443210 0110211211110000000 0000
Q ss_pred cccccCCCcCccccc-cCCCCCCCccCCcccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004015 213 CSEFLPDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 213 ~~~l~p~~~~si~sa-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~---v~~f~aHt~~IsaLaFSPdG~lLATaS~ 288 (779)
+.+......+ .++ |- ..++....++.|.+||+.+++. +..+..+ ..+..++|+|||++|+.++.
T Consensus 173 -----~~~~~~~~~~~spd----g~--~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 173 -----SGGTRPFNITFTPD----GN--FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp -----CSSSSEEEEEECTT----SS--EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred -----cCCCCccceEECCC----CC--EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 0000000000 111 10 0123344678999999999888 7777755 56788999999998776665
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC--Cccc---EEEEEEcCCCCEEEEEeC-CCeEEEEecCCC
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAV---IQDISFSDDSNWIMISSS-RGTSHLFAINPL 359 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~--t~a~---I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~ 359 (779)
....|.+||+.++ ....+..+..+. .... ...++|||||++|++++. +++|.||++...
T Consensus 241 ~~~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 STVDVFNFNQLSG------------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SEEEEEEEETTTT------------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCC------------ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 4345999998865 222233333331 1111 356899999999877665 569999999753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=121.47 Aligned_cols=94 Identities=7% Similarity=0.071 Sum_probs=66.5
Q ss_pred EECCCCcE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccE
Q 004015 253 RDIVSKNV-IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 330 (779)
Q Consensus 253 wDl~s~~~-v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I 330 (779)
+|..+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+.++ ..+..+..+ ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~ 297 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQR--------------KLIKAANLD---HTY 297 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCC
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccC--------------eEEEEEcCC---CCc
Confidence 45544432 122334555788899999 99999988 554 999999865 333344333 236
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 331 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 331 ~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+++|+|||++|++++.+++|+|||+.+......+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 799999999999999999999999998765444443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-11 Score=131.38 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=71.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.+||+.++++ ..+..|...+.+++|+|||++|++++.+ |. .|.+||+..+ ... .+..
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~------------~~~---~l~~-- 308 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG------------APQ---RITW-- 308 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS------------CCE---ECCC--
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC------------CEE---EEec--
Confidence 4699999998876 6788899999999999999999988864 43 3666687654 111 2211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC---CeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D---GTVhIwdl~~~ 359 (779)
....+.+++|||||++|++++.+ .+|++|++...
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 12358899999999999998875 58999999764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.4e-13 Score=143.58 Aligned_cols=108 Identities=6% Similarity=0.039 Sum_probs=84.7
Q ss_pred ccccCCCCeEEEEECCCCcEE-----EEeccCCCCeEEEEEcC--------CCCEEEEEeCCCCEEEEEeCCCCCCCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVI-----AQFRAHKSPISALCFDP--------SGILLVTASVQGHNINIFKIIPGILGTSS 307 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v-----~~f~aHt~~IsaLaFSP--------dG~lLATaS~DGt~I~Vwdi~~~~~g~~s 307 (779)
++++..|++|+|||+.++... ..+.+|++.|.+|+|+| ||++|||||.|++ |+|||+...
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t-v~~Wd~~~~------ 176 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT-LIIWRLTDE------ 176 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE-EEEEEEETT------
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe-EEEEECCCC------
Confidence 566788999999999987643 44679999999999998 8999999999987 999999764
Q ss_pred ccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEeCCCeEEEEecCCCCCceee
Q 004015 308 ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 308 ~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+..+..+ ...|.+++|+|++. +|++++.||+|+|||+.........
T Consensus 177 --------~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 177 --------GPILAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp --------EEEEEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred --------ceeeeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 233343332 23589999999875 8999999999999999876544333
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.9e-11 Score=122.73 Aligned_cols=191 Identities=14% Similarity=0.096 Sum_probs=132.1
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
.++|.+||+.+++.++++.....+..++++ ++.+.++ .++.|++||+.+++.+.++....... +. ...
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~------~~~ 139 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TE------EVR 139 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CS------SCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--cc------ccC
Confidence 368999999999999999987778888895 4655443 35899999999999888876531100 00 000
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
|. .++.+++.. +|..+.
T Consensus 140 ~~--~~~~~~~s~---------------------------dg~~l~---------------------------------- 156 (353)
T 3vgz_A 140 PL--QPRELVADD---------------------------ATNTVY---------------------------------- 156 (353)
T ss_dssp CC--EEEEEEEET---------------------------TTTEEE----------------------------------
T ss_pred CC--CCceEEECC---------------------------CCCEEE----------------------------------
Confidence 00 112233321 111110
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
+.....++.|.+||+.+++.+..+..+...+.+++|+|||++|++++.++. |.+||+
T Consensus 157 ----------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~ 213 (353)
T 3vgz_A 157 ----------------------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDT 213 (353)
T ss_dssp ----------------------EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEET
T ss_pred ----------------------EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEEC
Confidence 001123578999999999999998867777899999999999999998876 899998
Q ss_pred CCCCCCCCCccCCCCceeEEEEeecCC--CcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCC
Q 004015 299 IPGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 361 (779)
Q Consensus 299 ~~~~~g~~s~~~~~~s~~~l~~l~rG~--t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg 361 (779)
.++ ..+..+.-+. ....+.+++|+||+++|++++.+ ++|++||+.....
T Consensus 214 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 214 ADN--------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTT--------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CCC--------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 865 2333333221 12347899999999988777765 9999999977543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-10 Score=117.97 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=70.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCceeE--EEEeecC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVH--LYRLQRG 324 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~--l~~l~rG 324 (779)
+.|.+||+.+++.+..+..+. ...+++|+|||++|++++.+ +..|.+|++... + .... ...+..+
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--g---------~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--G---------VLFDTGQEFISGG 175 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--C---------CEEEEEEEEECSS
T ss_pred ccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCC--C---------cEeecCCccccCC
Confidence 389999999999988887654 46899999999866655544 443899998753 1 1111 1122122
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
..+..++|+|||++|++++ .+++|++||+.....
T Consensus 176 ---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 176 ---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 2378999999999776655 689999999987544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-10 Score=119.38 Aligned_cols=177 Identities=11% Similarity=0.132 Sum_probs=124.0
Q ss_pred CCEEEEEECCCCcEEEEEeCCC----------CEEEEEEc--CcEEEEEe---CCeEEEEeCCCCcEEEEEecCCcccCC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRS----------PIYSVRCS--SRVVAICQ---AAQVHCFDAATLEIEYAILTNPIVMGH 127 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s----------~V~sV~~s--~rlLaVs~---d~~I~IwD~~T~e~l~tl~t~p~~~~~ 127 (779)
.+.|.+||+.+++.+.++.... .+..+.++ ++.+.++. ++.|++||+.+++.+..+.....
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---- 185 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK---- 185 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT----
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC----
Confidence 4789999999999999998743 27889995 56565543 67899999999998877742110
Q ss_pred CCCCCccccccceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccc
Q 004015 128 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 207 (779)
Q Consensus 128 p~s~~~~~~~~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~ 207 (779)
. | ..+++.. +|..+
T Consensus 186 --------~--~-----~~~~~s~---------------------------dg~~l------------------------ 199 (353)
T 3vgz_A 186 --------M--S-----TGLALDS---------------------------EGKRL------------------------ 199 (353)
T ss_dssp --------T--C-----CCCEEET---------------------------TTTEE------------------------
T ss_pred --------c--c-----ceEEECC---------------------------CCCEE------------------------
Confidence 0 0 1112220 11111
Q ss_pred ccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEEcCCCCEE
Q 004015 208 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILL 283 (779)
Q Consensus 208 ~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a----Ht~~IsaLaFSPdG~lL 283 (779)
+.+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|
T Consensus 200 ----------------------------------~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 200 ----------------------------------YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp ----------------------------------EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred ----------------------------------EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 1112357899999999998888774 56678899999999988
Q ss_pred EEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 284 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 284 ATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
+.++.+...|.+||+.++ ..+..+.-+. -..++|+||++++++++ .+++|++||+.+...
T Consensus 246 ~~~~~~~~~v~~~d~~~~--------------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNG--------------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEESSSSEEEEEETTTC--------------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEECCCC--------------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 877776456999999765 2233333232 24699999999776666 689999999977543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-11 Score=132.99 Aligned_cols=107 Identities=9% Similarity=0.123 Sum_probs=80.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++++..||+|+|||++++..+..+.+|...|.+++|+|+|++||+|+.||+ |+|||+. + .......
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~------------~~~~~~~ 230 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-L------------QEKKVIP 230 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-C------------CEEEEEC
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-C------------ccccccc
Confidence 344567899999999999877777889999999999999999999999998 8999987 3 1111121
Q ss_pred eecCC---CcccEEEEEEcCCCCEEEEE-eCCCe------EEEEecCCCCC
Q 004015 321 LQRGL---TNAVIQDISFSDDSNWIMIS-SSRGT------SHLFAINPLGG 361 (779)
Q Consensus 321 l~rG~---t~a~I~sIaFSpDg~~LAtg-S~DGT------VhIwdl~~~gg 361 (779)
.+... +...|.+++|++++.++++. +.||. +++|++...+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 11111 12258999999999988654 34443 89999986543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=133.41 Aligned_cols=188 Identities=10% Similarity=0.036 Sum_probs=129.7
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeC--CCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDA--ATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~--~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
.++|.+||+.+++++.++.....+..++|+ +++|++ +.+++|.+||+ .+++++.++....
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~--------------- 222 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI--------------- 222 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS---------------
T ss_pred CCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC---------------
Confidence 378999999999999999976569999996 555554 77899999999 8999888875321
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
+|+.+|++..+ +.+|+.+.
T Consensus 223 -----~p~~va~sp~~-----------------------~~dg~~l~--------------------------------- 241 (543)
T 1nir_A 223 -----EARSVESSKFK-----------------------GYEDRYTI--------------------------------- 241 (543)
T ss_dssp -----EEEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred -----CcceEEeCCCc-----------------------CCCCCEEE---------------------------------
Confidence 12345554100 00122110
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC----------CC-CeEEEEEcCCCCE-EEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH----------KS-PISALCFDPSGIL-LVT 285 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH----------t~-~IsaLaFSPdG~l-LAT 285 (779)
+....++.|.|||..+++++..+..+ .. .+.++.|+|++.. +++
T Consensus 242 ------------------------v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 242 ------------------------AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp ------------------------EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ------------------------EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 00123578999999999999988753 33 6899999998765 556
Q ss_pred EeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCcee
Q 004015 286 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVN 364 (779)
Q Consensus 286 aS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~ 364 (779)
...+|+ |.+||+.+. ....+..+..+ ..+.+++|+|||+||++++ .+++|.|||+.+......
T Consensus 298 ~~~~g~-i~vvd~~~~------------~~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 298 VKETGK-VLLVNYKDI------------DNLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp ETTTTE-EEEEECTTS------------SSCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ECCCCe-EEEEEecCC------------CcceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 666665 899998764 11122233222 2377899999999877655 589999999988654444
Q ss_pred ec
Q 004015 365 FQ 366 (779)
Q Consensus 365 ~~ 366 (779)
+.
T Consensus 362 i~ 363 (543)
T 1nir_A 362 VD 363 (543)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-10 Score=116.38 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=46.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC---CEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s---~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t 120 (779)
++|++||+.+++.+.++.... .+..++++ ++.++++ .+++|++||+.+++.+.++..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 679999999999999999876 78899996 5555443 357999999999998877753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-10 Score=129.23 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=126.2
Q ss_pred CCEEEEEEC--CCCcEEEEEeCCCCEEEEEEcC------cEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCC
Q 004015 63 PTVVHFYSL--RSQSYVHMLKFRSPIYSVRCSS------RVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGG 132 (779)
Q Consensus 63 ~~tVrIWDL--~Tge~V~tLkf~s~V~sV~~s~------rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~ 132 (779)
.++|++||+ .+++++.++.....++.|+|+. ++|+++ .+++|.+||..|++++.++.+.......
T Consensus 199 d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~----- 273 (543)
T 1nir_A 199 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT----- 273 (543)
T ss_dssp TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-----
T ss_pred CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc-----
Confidence 478999999 9999999999888899999974 566664 4799999999999999998753210000
Q ss_pred ccccccceeecCc--eeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 133 IGIGYGPLAVGPR--WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 133 ~~~~~~piAlgpR--wLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
..+.+ +++ -++++ | ++..
T Consensus 274 --~~~~~---~~~v~~i~~s-------------~--------------~~~~---------------------------- 293 (543)
T 1nir_A 274 --QTYHP---EPRVAAIIAS-------------H--------------EHPE---------------------------- 293 (543)
T ss_dssp --CCEES---CCCEEEEEEC-------------S--------------SSSE----------------------------
T ss_pred --ccccc---CCceEEEEEC-------------C--------------CCCE----------------------------
Confidence 00000 000 00010 0 0000
Q ss_pred cccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEEcCCCCEEEEEeC
Q 004015 211 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA--QFRAHKSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 211 ~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~--~f~aHt~~IsaLaFSPdG~lLATaS~ 288 (779)
.++....+|.|.+||+.+.+.+. .+ .|...+..++|+|||++|++++.
T Consensus 294 -----------------------------~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 294 -----------------------------FIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp -----------------------------EEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred -----------------------------EEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec
Confidence 11223457899999998866544 44 35667888999999998776654
Q ss_pred CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc--cEEEEEEcCC-CCEEEEEe-CCCeEEEEecCC------
Q 004015 289 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDD-SNWIMISS-SRGTSHLFAINP------ 358 (779)
Q Consensus 289 DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a--~I~sIaFSpD-g~~LAtgS-~DGTVhIwdl~~------ 358 (779)
....|.|||+.++ ..+..+.-|..++ ....+ ++|| ++.++++. .|++|.||++.+
T Consensus 344 ~~~~v~v~D~~tg--------------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~ 408 (543)
T 1nir_A 344 NSNKVAVIDSKDR--------------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 408 (543)
T ss_dssp GGTEEEEEETTTT--------------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred CCCeEEEEECCCC--------------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh
Confidence 3334999999876 3444444332222 22233 4777 66666665 689999999988
Q ss_pred -CCCceeeccCC
Q 004015 359 -LGGSVNFQPTD 369 (779)
Q Consensus 359 -~gg~~~~~~H~ 369 (779)
......+.+|.
T Consensus 409 ~~~~v~~l~~~g 420 (543)
T 1nir_A 409 AWKKVAELQGQG 420 (543)
T ss_dssp BTSEEEEEECSC
T ss_pred cCeEEEEEEcCC
Confidence 44444555553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=117.30 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=72.2
Q ss_pred CCCeEEEEEC---CCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCC-CCCCCCCccCCCCceeEEE-
Q 004015 246 NVGMVIVRDI---VSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIP-GILGTSSACDAGTSYVHLY- 319 (779)
Q Consensus 246 ~dG~V~VwDl---~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~- 319 (779)
.++.|.+||+ ...+.+..+..+. .+.+++|+|+|++|++++ .+++ |.+||+.. + ....+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~------------~~~~~~~ 169 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDR-ICLFTVSDDG------------HLVAQDP 169 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTE-EEEEEECTTS------------CEEEEEE
T ss_pred CCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCE-EEEEEecCCC------------ceeeecc
Confidence 3578999999 4445566665544 588999999999888887 6665 99999976 3 122222
Q ss_pred -EeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCc
Q 004015 320 -RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 320 -~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~ 362 (779)
.+.. .....+.+++|+||+++|++++ .++++++|++....+.
T Consensus 170 ~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 170 AEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred ccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 2211 1123478999999999886665 8899999999764443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-09 Score=110.32 Aligned_cols=104 Identities=10% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC-CcEEE----EeccC-CCCeEEEEEcCCCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIVS-KNVIA----QFRAH-KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~s-~~~v~----~f~aH-t~~IsaLaFSPdG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.++.|.+||+.+ ++... .+..+ ...+.+++|+|+|++|+.++ .+++ |.+|++... .+ ....+
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-~g---------~~~~~ 217 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-HG---------NIECV 217 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-TS---------CCEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-CC---------cEEEE
Confidence 457899999987 54432 33333 35788999999999776665 5554 999998642 01 11222
Q ss_pred EEe---ecCCC-cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 319 YRL---QRGLT-NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 319 ~~l---~rG~t-~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
..+ ..+.. ...+.+++|+|||++|+++. .+++|++|++...+
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 222 12211 12377899999999888555 79999999998533
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-11 Score=136.85 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.|.+||+.+++...... .|...|.+++|+|||++|++++.++ ..|.+||+.++. ....+.
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~~ 301 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----------FVRTLF 301 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------EEEEEE
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------eeeEEE
Confidence 45689999999987654442 5777899999999999999988765 248999987640 112222
Q ss_pred EeecCCCcccEEEEEEcC--CCCEEEEEeCCCeEEEEecCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSp--Dg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..........+.+++||| ||++|++++.||+++||.+...++
T Consensus 302 ~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 302 VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 211111011246789999 999999999999999999974443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=134.71 Aligned_cols=51 Identities=4% Similarity=-0.011 Sum_probs=41.4
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CcEEEEEeC----------CeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s----~V~sV~~s--~rlLaVs~d----------~~I~IwD~~T~e~ 114 (779)
++|++||+.+|+....+.... .|.+++|+ ++.|+.+.+ +.|++||+.+++.
T Consensus 37 g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 37 GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 579999999999888887644 38999996 677776543 7899999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=135.89 Aligned_cols=108 Identities=8% Similarity=0.177 Sum_probs=84.5
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 243 DADNVGMVIVRDIVSK--------N---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~--------~---~v~~f~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
++..+|.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+..+
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~--------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTET--------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSS---------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCC---------
Confidence 5678999999998754 2 24566789999999999998 899999999998 899999864
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
..+... .+ +...|.+++|||||++||+|+.||+|+|||+. ......+..|
T Consensus 183 -----~~~~~~-~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 183 -----VKVCAT-LP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp -----EEEEEE-EC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred -----cceeec-cC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 222222 22 23459999999999999999999999999997 3333344433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=132.95 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCEEEEEeCC--------------------------------CCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 271 ISALCFDPSGILLVTASVQ--------------------------------GHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~D--------------------------------Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.+++|||||++||+++.| ...|.+||+..+ ..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~--------------~~- 247 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG--------------KT- 247 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT--------------EE-
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC--------------ce-
Confidence 5889999999999999822 124889998764 11
Q ss_pred EEeecC-CCcccEEEEEEcCCCCEEEEEeCCC-----eEEEEecCCC
Q 004015 319 YRLQRG-LTNAVIQDISFSDDSNWIMISSSRG-----TSHLFAINPL 359 (779)
Q Consensus 319 ~~l~rG-~t~a~I~sIaFSpDg~~LAtgS~DG-----TVhIwdl~~~ 359 (779)
..+..+ .....|.+++|||||++|++++.++ +|++||+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 122111 1223489999999999999988876 9999999775
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=135.00 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=72.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCC----------------eEEEEEcCCCCEEEEEeCCCC--------------------
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSP----------------ISALCFDPSGILLVTASVQGH-------------------- 291 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~----------------IsaLaFSPdG~lLATaS~DGt-------------------- 291 (779)
+.|.+||+.+++.......+... +.+++|||||++||+++.|+.
T Consensus 172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 46888888887766554444443 477999999999999987652
Q ss_pred ------------EEEEEeCCC-CCCCCCCccCCCCceeEEEEeecC-CCcccEEEEEEcCCCCEEEEEeC-----CCeEE
Q 004015 292 ------------NINIFKIIP-GILGTSSACDAGTSYVHLYRLQRG-LTNAVIQDISFSDDSNWIMISSS-----RGTSH 352 (779)
Q Consensus 292 ------------~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~~l~rG-~t~a~I~sIaFSpDg~~LAtgS~-----DGTVh 352 (779)
.|.+||+.. + .... +..+ .....|.+++| |||++|++++. +.+|+
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~------------~~~~---~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQA------------QTQW---IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTC------------CCEE---ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEE
T ss_pred ecCCCCCCCCeeEEEEEECCCCC------------ceEE---ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEE
Confidence 477778765 4 1111 1111 12335899999 99999998765 57899
Q ss_pred EEecCCCCCceeeccC
Q 004015 353 LFAINPLGGSVNFQPT 368 (779)
Q Consensus 353 Iwdl~~~gg~~~~~~H 368 (779)
+||+........+..|
T Consensus 316 ~~d~~~g~~~~~~~~~ 331 (741)
T 2ecf_A 316 EVTLASNQQRVLAHET 331 (741)
T ss_dssp EEETTTCCEEEEEEEE
T ss_pred EEECCCCceEEEEEcC
Confidence 9999876544444444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=132.71 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=74.2
Q ss_pred eEEEEECCC-CcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 249 MVIVRDIVS-KNVIAQFR--AHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 249 ~V~VwDl~s-~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.|.+||+.+ ++...... .|...|..++| |||++|+.++.+ ...|.+||+.++ ....+...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~ 330 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN------------QQRVLAHE 330 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC------------CEEEEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC------------ceEEEEEc
Confidence 788899998 87655443 47889999999 999999977641 124899998765 22333332
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
........+.+++|||||+++++++.||+++||.+...++...+..|
T Consensus 331 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 21100002468999999999999999999999998754443344444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-09 Score=111.70 Aligned_cols=108 Identities=12% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCCeEEEEECCCCcE--EEEec---cCCCCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNV--IAQFR---AHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~--v~~f~---aHt~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.++.|.+||+.+++. +..+. .+......|+|+|||++|+++..+ ...|.||++... . +....+.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~---------g~~~~~~ 300 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-N---------GTLTKVG 300 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-T---------CCEEEEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-C---------CcEEEee
Confidence 457899999987643 33333 344567899999999998776665 345999998632 0 1223344
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeec
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+..| ..+.+++|||||++|++++ .++++.||++....+.....
T Consensus 301 ~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 301 YQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 44332 3467999999999999988 67999999887665555443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-08 Score=107.43 Aligned_cols=106 Identities=8% Similarity=0.190 Sum_probs=70.4
Q ss_pred CCCeEEEEECCC--CcE--EEEeccCC------CCeEEEEEcCCCCEEE-EEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 246 NVGMVIVRDIVS--KNV--IAQFRAHK------SPISALCFDPSGILLV-TASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 246 ~dG~V~VwDl~s--~~~--v~~f~aHt------~~IsaLaFSPdG~lLA-TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+ +...+++ |.||++... +.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~-----------g~ 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD-----------GH 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG-----------GC
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC-----------Cc
Confidence 346788888764 432 33333332 3488999999999874 4555655 999998642 02
Q ss_pred eeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCCceee
Q 004015 315 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 315 ~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg~~~~ 365 (779)
...+..+..+ ...+.+++|||||++|++++.+ +++.||++....+....
T Consensus 275 ~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 2344444331 1236799999999999988865 89999988766555443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=106.99 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCeEEEEECC-CCcE--EEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 246 NVGMVIVRDIV-SKNV--IAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~~--v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.++.|.+||+. +++. +..+..+. ..+..++|+|||++|+.++..+..|.+|++... . +....+..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~---------g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-T---------GAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-T---------TEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-C---------CceEEeeee
Confidence 45789999998 4443 23333333 367889999999977776655456999998742 0 012222232
Q ss_pred ecCCC----cccEEEEEEcCCCCEEE-EEeCCCeEEEEecCCC
Q 004015 322 QRGLT----NAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t----~a~I~sIaFSpDg~~LA-tgS~DGTVhIwdl~~~ 359 (779)
..... ...+..++|||||++|+ +...+++|.||++...
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 21110 02378999999999885 5556899999999754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-08 Score=107.39 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCcE------E------EE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCC
Q 004015 246 NVGMVIVRDIVSKNV------I------AQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~------v------~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
.++.|.+|++..... + .. ...+...+..++|+|||++|+.++.....|.+|++..+
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------- 243 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------- 243 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-----------
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-----------
Confidence 457899998875431 1 12 22344567899999999988887753345999998754
Q ss_pred CceeEEEEeecCCC-cccEEEEEEcCCCCEEEEEeCC--CeEEEEecCCCCCc
Q 004015 313 TSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSR--GTSHLFAINPLGGS 362 (779)
Q Consensus 313 ~s~~~l~~l~rG~t-~a~I~sIaFSpDg~~LAtgS~D--GTVhIwdl~~~gg~ 362 (779)
....+..+..... .....+++|||||++|+++..+ ++|.||++....+.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 244 -MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp -EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred -ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 2233333322111 1236799999999999777765 89999999754443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=107.43 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=68.9
Q ss_pred CCCCeEEEEECC-CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----------CEEEEEeCCCCCCCCCCccCCCC
Q 004015 245 DNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPSGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 245 ~~dG~V~VwDl~-s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG----------t~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
..++.++||++. .+..+..+..|...+.+++|+|+|++|++++.++ ..|.+||+..+
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~------------ 259 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG------------ 259 (297)
T ss_dssp CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC------------
T ss_pred cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC------------
Confidence 346788899886 5566788888989999999999999999888763 34899998764
Q ss_pred ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 314 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 314 s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
....+..+..+ ...|.+++|+||+++|++++.+.
T Consensus 260 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 260 NVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence 22344444221 23478899999999999888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-09 Score=124.64 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
...|.+||+.+++....+..| ...|..++|||||++|++++.++ ..|.+||+.++ ....
T Consensus 227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g------------~~~~ 294 (723)
T 1xfd_A 227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG------------VCTK 294 (723)
T ss_dssp EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC------------CEEE
T ss_pred eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC------------cceE
Confidence 458999999998876677765 67899999999999998776432 35899998765 2223
Q ss_pred EEEeecCCCcccE----EEEEEcCCCCEEEE--EeCCC----eEEEEecC
Q 004015 318 LYRLQRGLTNAVI----QDISFSDDSNWIMI--SSSRG----TSHLFAIN 357 (779)
Q Consensus 318 l~~l~rG~t~a~I----~sIaFSpDg~~LAt--gS~DG----TVhIwdl~ 357 (779)
+.... ....+ .+++|||||++|+. +..++ +.+||.+.
T Consensus 295 ~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 295 KHEDE---SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEE---CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEec---cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 32221 11112 37899999998875 45677 55665554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=121.56 Aligned_cols=97 Identities=8% Similarity=-0.057 Sum_probs=70.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 250 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 250 V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
+.|||+.++++......+. .+++|||||++||+++.+ ++ |.+||+..+ ... .+. +.
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~~g------------~~~---~l~-~~ 193 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSG------------GLR---VFD-SG 193 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETTTC------------CCE---EEC-CS
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCCCC------------Cce---Eee-cC
Confidence 4499999887655444333 789999999999988776 44 899998765 122 232 21
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC--eEEEEecCCCCCceeeccC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG--TVhIwdl~~~gg~~~~~~H 368 (779)
...+.+++|||||++||++..++ +|++||+...... .+..|
T Consensus 194 -~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 194 -EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp -SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred -CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 23479999999999999888899 8999999765433 44444
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=125.64 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred CEEEEEECCCCcEEEEEeCCC----CEEEEEEc--CcEEEEEe----------CCeEEEEeCCCCcE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQ----------AAQVHCFDAATLEI 114 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s----~V~sV~~s--~rlLaVs~----------d~~I~IwD~~T~e~ 114 (779)
++|++||+.+|+....+.... .|.+++|+ ++.|+.+. +++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 579999999999887776543 38899996 67777654 47999999999875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.7e-09 Score=125.72 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=78.8
Q ss_pred CCeEE-EEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVI-VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~-VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
++.+. +||+.+++.. .+..|...+.+++|||||++||+++.+++ |++||+.++ ....+. .++
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg------------~~~~~~---~~~ 419 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETG------------KPTVIE---RSR 419 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTC------------CEEEEE---ECS
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCC------------ceEEec---cCC
Confidence 35677 8899877654 44588889999999999999999999986 899999875 222222 232
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC----------eEEEEecCCCCCceeeccCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRG----------TSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DG----------TVhIwdl~~~gg~~~~~~H~ 369 (779)
...|.+++|||||++||+++.++ +|+|||+.... ...+..|.
T Consensus 420 -~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 420 -EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp -SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred -CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 23478999999999999988765 99999998643 44555553
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=125.59 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------CEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG---------t~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
.++.|++||+.+++....+..|...|.+++|||||++||+++.++ ..|++||+..+ .
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~ 463 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K 463 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c
Confidence 456899999999998888889999999999999999999888754 35999999764 2
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+..+..+ ...+.+++|||||++|+.++.++...+|+...
T Consensus 464 -~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 464 -IFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp -EEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred -EEEeeCC--CcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 2333221 23478899999999999999999999998753
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-09 Score=116.84 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=66.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEE--------EcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALC--------FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLa--------FSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
.|.+||+.+++.. .+..|...+..++ |||||+++++++.+|+ ++||++ + ..+.
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g--------------~~~~- 279 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--G--------------ERVE- 279 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--T--------------EEEC-
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--C--------------Ceec-
Confidence 7999999998887 8888888777777 9999999999999987 899998 4 1111
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCe-EEEEecC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGT-SHLFAIN 357 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGT-VhIwdl~ 357 (779)
. ....|.+++|| |++++++++.+.+ -.||.+.
T Consensus 280 ~----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 280 A----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp C----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred c----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 1 12348899999 9999999888865 4444443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=101.61 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=53.9
Q ss_pred CeEEEE-EcCCCCEEEEEeCCCC-----EEEEEeCCC-CCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC---CC
Q 004015 270 PISALC-FDPSGILLVTASVQGH-----NINIFKIIP-GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD---DS 339 (779)
Q Consensus 270 ~IsaLa-FSPdG~lLATaS~DGt-----~I~Vwdi~~-~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp---Dg 339 (779)
.+..++ |||||++|++++.+.. .|.||++.. + ....+..+.... ...+..++||| ||
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~-~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTP-TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECS-SCCTTCCCEEECTTCT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecC-CCCcccceecCCCcCC
Confidence 488999 9999999887765443 599999863 2 122221111111 12245789999 89
Q ss_pred CEEEEEeCC-CeEEEEecCCC
Q 004015 340 NWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 340 ~~LAtgS~D-GTVhIwdl~~~ 359 (779)
++|++++.+ ++|.||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999999875 89999999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-07 Score=100.26 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=45.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe-----------CCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~-----------d~~I~IwD~~T~e~l~tl~t 120 (779)
++|.+||+.+++.+.++.....- .|+++ +++|.++. ++.|.+||+.+++.+.++..
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 67999999999999998865444 88886 66776653 46799999999999988864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-07 Score=97.22 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=72.5
Q ss_pred CCCeEEEEECC-CCcEEEEec----cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC-CCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIV-SKNVIAQFR----AHKSPISALCFDPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~~v~~f~----aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~-~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+|.+.+|++. .++....+. .+...+.+++|+|||++|++++.....|.+||+. ++ ....+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g------------~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG------------EVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS------------CEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC------------CEEEee
Confidence 46789999997 455544443 2556799999999999998877644469999987 43 122233
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG 361 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg 361 (779)
.+.-......+..++|||||++|++++. ++++.+|++....+
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 3321000134789999999999988875 78999999875433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-08 Score=114.35 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=62.9
Q ss_pred CeEEEEECCC---Cc--EEEEec------cCCCCeEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCCC-CCCCccCCC
Q 004015 248 GMVIVRDIVS---KN--VIAQFR------AHKSPISALCFDPSGILLVTASVQG---HNINIFKIIPGIL-GTSSACDAG 312 (779)
Q Consensus 248 G~V~VwDl~s---~~--~v~~f~------aHt~~IsaLaFSPdG~lLATaS~DG---t~I~Vwdi~~~~~-g~~s~~~~~ 312 (779)
..|.|||+.+ ++ ....+. +|...|..++|||||++++.....+ ..|.+||+.++.. +. .
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~-~----- 301 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN-C----- 301 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE-E-----
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc-e-----
Confidence 4789999998 73 223343 3888899999999999877665433 2488999876510 00 0
Q ss_pred CceeEEEEeecCCCcccE-----EEEEEcCCCCEEE-EEe-CCCeEEEEecCCCCCc
Q 004015 313 TSYVHLYRLQRGLTNAVI-----QDISFSDDSNWIM-ISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I-----~sIaFSpDg~~LA-tgS-~DGTVhIwdl~~~gg~ 362 (779)
.....+.. .+. ...| .+++|||||++|+ ..+ .+|.-|||-+...++.
T Consensus 302 ~~~~~l~~--~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 302 LVARQHIE--MST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CGGGCEEE--ECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eEEEEeee--ccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 00111111 111 1112 3688999999987 665 4565555544433443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-06 Score=88.29 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aH--t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..++.|.+||.. ++.+..+..+ ...+..|+|+++|+++++...++..|.+||... ..+..+.
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------------~~~~~~~ 245 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------------QLISALE 245 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------------CEEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---------------CEEEEEc
Confidence 356899999984 4566777544 467899999999999998877752499998532 1233333
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+.....+.+++|+|||+++++ +.|++|+||++...
T Consensus 246 ~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 246 SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 2222234789999999987766 67999999998653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-07 Score=95.94 Aligned_cols=178 Identities=7% Similarity=0.005 Sum_probs=118.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++|.+||++|++.+.++........|+++ +++.++. .++.|.+||+.|++...++...... + ..
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~---------~~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD----M---------ES 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----T---------TT
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----c---------cC
Confidence 68999999999999999876778889993 5444444 5899999999999988777532100 0 00
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
-.|.-|++.. +.++
T Consensus 131 -~~p~~i~~~~----------------------------~~ly------------------------------------- 144 (328)
T 3dsm_A 131 -GSTEQMVQYG----------------------------KYVY------------------------------------- 144 (328)
T ss_dssp -CBCCCEEEET----------------------------TEEE-------------------------------------
T ss_pred -CCcceEEEEC----------------------------CEEE-------------------------------------
Confidence 0011112210 0000
Q ss_pred cCccccccCCCCCCCccCCcccccC-CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---------C
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDAD-NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---------G 290 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~-~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D---------G 290 (779)
+... .++.|.+||+.+++.+..+.... ....++|+|+|++++++..+ .
T Consensus 145 ---------------------v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 145 ---------------------VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp ---------------------EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred ---------------------EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCC
Confidence 0011 25689999999999888887533 34679999999988887654 1
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..|.+||..++ .+...+.+..| .....++|+||+++|.++.. +|.+||..+.
T Consensus 203 ~~v~~id~~t~------------~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 203 PSLYRIDAETF------------TVEKQFKFKLG---DWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CEEEEEETTTT------------EEEEEEECCTT---CCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred ceEEEEECCCC------------eEEEEEecCCC---CCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 34899998764 22222222212 23689999999999988765 8888888653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-08 Score=102.23 Aligned_cols=103 Identities=10% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC-----------CCEEEEEeCCCCCCCCCCc
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHK------SPISALCFDPSGILLVTASVQ-----------GHNINIFKIIPGILGTSSA 308 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt------~~IsaLaFSPdG~lLATaS~D-----------Gt~I~Vwdi~~~~~g~~s~ 308 (779)
.++.|.+||+.+++.+..+..+. ..+.+++|+|||++|++++.+ ...|.+||+.++...
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---- 138 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---- 138 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----
T ss_pred CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----
Confidence 45789999999998888776433 237889999999999998865 234999998763000
Q ss_pred cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 309 CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 309 ~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
........ ...+.+++|+|||+ +.+++ +.|.+||+.+......+
T Consensus 139 -----~~~~~~~~-----~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 139 -----KPVRTFPM-----PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp -----CCSEEEEC-----CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEE
T ss_pred -----ceeeeccC-----CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccc
Confidence 01111211 12377899999999 55554 34999999775433333
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=116.42 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=42.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEY 116 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~ 116 (779)
.+|++||+.+|+.+...+....+..++|+ ++.||.+.+++|++||+.+++...
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp EEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred eEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE
Confidence 68999999999874323345678899996 678888889999999999987643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=111.84 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=70.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.+.|||+.++++. .+..|...+...+|||||+.||.++. + .|.+|++..+. ...+ +. .|..
T Consensus 91 ~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~-~-~i~~~~~~~~~------------~~~l-t~-~g~~ 153 (740)
T 4a5s_A 91 TASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWN-N-DIYVKIEPNLP------------SYRI-TW-TGKE 153 (740)
T ss_dssp EEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEET-T-EEEEESSTTSC------------CEEC-CS-CCBT
T ss_pred ceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEEC-C-eEEEEECCCCc------------eEEE-cC-CCCc
Confidence 367899999998754 57778889999999999999999864 3 49999987651 1110 10 1111
Q ss_pred c----------------ccEEEEEEcCCCCEEEEEeCCCe-EEEEecCCCCC
Q 004015 327 N----------------AVIQDISFSDDSNWIMISSSRGT-SHLFAINPLGG 361 (779)
Q Consensus 327 ~----------------a~I~sIaFSpDg~~LAtgS~DGT-VhIwdl~~~gg 361 (779)
. .....++|||||++||.++.|.+ +.+|++..++.
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 0 11135899999999999987766 99998865443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-07 Score=96.01 Aligned_cols=98 Identities=6% Similarity=-0.023 Sum_probs=66.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DG-----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
..+.|.+||+.+++. ..+..+...+..++||| ||+.||.++.++ ..|.++|+... .. .
T Consensus 166 ~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~---~ 229 (388)
T 3pe7_A 166 PCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT------------NM---R 229 (388)
T ss_dssp CCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC------------CC---E
T ss_pred CcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC------------ce---E
Confidence 457899999999865 44456677899999999 999998887642 13666666542 11 1
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC-C----eEEEEecCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR-G----TSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-G----TVhIwdl~~~ 359 (779)
.+..+.....+..++|||||++|+..+.+ + ++++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 22222111237789999999988776542 2 4999998764
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=97.09 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=67.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCC-----EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~DGt-----~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
....|.+||+.+++....+ .+...+..+.|+| ||+.|+.++.++. .|.+||+... ...
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------------~~~--- 229 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------------NVR--- 229 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------------CCE---
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------------cee---
Confidence 4568999999988765444 5677899999999 8998877765432 3677777543 111
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC-----CeEEEEecCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR-----GTSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-----GTVhIwdl~~~ 359 (779)
.+..+.....+..++|||||++|+.++.+ +++++||+...
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 22121112247889999999998888665 55999998653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-06 Score=86.94 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=65.6
Q ss_pred CCeEEEEECCCCcEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.++|..+++++..+... ......|+|+|||++|..+.. + |.+||..++.... ... +..+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~----------~~~--~~~~- 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPV----------RPF--LEFR- 265 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCS----------SCS--BCCC-
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceee----------eee--ecCC-
Confidence 478999999999888777643 236889999999998887765 4 8899987651100 000 0011
Q ss_pred CcccEEEEEEcCC-CCEEEEE----eCCCeEEEEecC
Q 004015 326 TNAVIQDISFSDD-SNWIMIS----SSRGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpD-g~~LAtg----S~DGTVhIwdl~ 357 (779)
......|+++|+ ++.+++. ..+++|.+|+..
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 124789999994 5555555 578999999987
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=96.32 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec-
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r- 323 (779)
..+|.|.+||+.++.... +...|+|++|||+| ++.|..||+ |++|+.... ......++.+
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~------------~~~~k~~I~~P 203 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNG------------EMEKQFEFSLP 203 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEETT------------EEEEEEEECCC
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCc------------cccccceecCC
Confidence 467999999999887653 45689999999999 677889998 899976543 1110223311
Q ss_pred ---C---CCcccEEEEEEcCCCCEEEEE
Q 004015 324 ---G---LTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 324 ---G---~t~a~I~sIaFSpDg~~LAtg 345 (779)
+ .....|.+|+|.++++||++=
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEEE
Confidence 1 023569999999999999863
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-05 Score=92.33 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=122.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCC--CCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~--T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
++|.+||+.|++.+.+|.....+..+.++ +++|.+ +.++.|.+||+. +++.+.++....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---------------- 240 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------------- 240 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC----------------
Confidence 68999999999999999988788899996 565554 667899999996 888887775321
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+|+.++++.-+ +.+|+.+.
T Consensus 241 ----~P~~ia~s~~~-----------------------~pDGk~l~---------------------------------- 259 (567)
T 1qks_A 241 ----EARSIETSKME-----------------------GWEDKYAI---------------------------------- 259 (567)
T ss_dssp ----EEEEEEECCST-----------------------TCTTTEEE----------------------------------
T ss_pred ----CCceeEEcccc-----------------------CCCCCEEE----------------------------------
Confidence 12344443000 00222210
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEEcCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----------HKS-PISALCFDPSGILLVTAS 287 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a----------Ht~-~IsaLaFSPdG~lLATaS 287 (779)
+....++.|.|+|..+.++++++.. |.. .+..|.+++++..++..-
T Consensus 260 -----------------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 260 -----------------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp -----------------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -----------------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 0112346888999999998887763 222 588999999987665554
Q ss_pred CCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCC
Q 004015 288 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 288 ~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~g 360 (779)
.+...|.++|.... ....+..+..+ ....++.|+||++||.++. .+++|.|+|+.+..
T Consensus 317 ~~~g~v~~vd~~~~------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 317 KETGKILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp TTTTEEEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred cCCCeEEEEecCCC------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 54344888887653 11122233222 2367899999999987766 57899999998753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.9e-07 Score=102.57 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=67.2
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC--CCCCCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIV-SK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~-s~---~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~--~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+. .+ ... .+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~~~------------~~~---~l 280 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPATG------------AAT---QL 280 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTTTC------------CEE---ES
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECCCC------------cee---ec
Confidence 479999998 56 444444566889999999999998888888875 4555543 32 111 11
Q ss_pred ecCCCcc-------cEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 322 QRGLTNA-------VIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 322 ~rG~t~a-------~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
..+.... .+.+++|+||++++++++. ++++||.+...++
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 1111110 1467999999999999999 9999997765433
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.4e-06 Score=86.00 Aligned_cols=172 Identities=8% Similarity=0.065 Sum_probs=114.6
Q ss_pred CEEEEEECCCCcEEEEEeCCC--CEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s--~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|.+||.+||+.+.++.... .+.++.+. +++++ +.++.|++||. +++.++++..... . ....
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~---~--------~~~~ 81 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAG---C--------EMQT 81 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTT---C--------EEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCC---c--------cccc
Confidence 679999999999999999864 68888884 77777 77889999999 8999988865210 0 0000
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ .. .+|.++..
T Consensus 82 ~~-------~~---------------------------~dG~~lv~---------------------------------- 93 (276)
T 3no2_A 82 AR-------IL---------------------------PDGNALVA---------------------------------- 93 (276)
T ss_dssp EE-------EC---------------------------TTSCEEEE----------------------------------
T ss_pred cE-------EC---------------------------CCCCEEEE----------------------------------
Confidence 00 00 02222110
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~------aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
+....+.|..+|. +++.+..+. .+......++++++|.+|++.+.+++ |
T Consensus 94 -----------------------~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v 148 (276)
T 3no2_A 94 -----------------------WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-V 148 (276)
T ss_dssp -----------------------EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-E
T ss_pred -----------------------ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-E
Confidence 0001233444443 334444433 12224455688999999999988876 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+||.. + ..++++.++ ..+.++++.++|+.+++++.+++|..||..++
T Consensus 149 ~~~d~~-G--------------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 149 REIAPN-G--------------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEECTT-S--------------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEECCC-C--------------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999976 5 456777654 23567899999999999998888988887664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.7e-06 Score=85.34 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEE-EEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~Isa-LaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
...|.+|| +++....+..|...|.. +.|+ || ++++++.+|+ ++|| +..+ ... .+..+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g------------~~~---~~~~~- 300 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDG------------EIK---PIAKG- 300 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESS------------SEE---EEECS-
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCC------------ceE---EEecC-
Confidence 45788888 66655555677788986 9999 99 9999999986 8999 7632 112 22222
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeE-EEEecCCCCCceeeccCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTS-HLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTV-hIwdl~~~gg~~~~~~H~ 369 (779)
...|.+++|+| +++++++.+++. +||.+. +....+..|.
T Consensus 301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 301 -RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp -SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred -CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 24589999999 788888887775 899887 4444454443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-05 Score=84.61 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=72.4
Q ss_pred ccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEE-------eCCCCEEEEEeCCCCCCCCCCccCCCC
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTA-------SVQGHNINIFKIIPGILGTSSACDAGT 313 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATa-------S~DGt~I~Vwdi~~~~~g~~s~~~~~~ 313 (779)
....++.|++||..+++.+.++. .+...+.+++|+| |.++++. +.+.+ |.+|+...+
T Consensus 213 ~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~~g------------ 278 (329)
T 3fvz_A 213 ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFSSG------------ 278 (329)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETTTC------------
T ss_pred EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcCCC------------
Confidence 33467899999999889988885 5667899999999 5444443 22334 899998765
Q ss_pred ceeEEEEeecCC-CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 314 SYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 314 s~~~l~~l~rG~-t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+..+..+. ....+.+|+|+|||..+++...+++|++|++..
T Consensus 279 --~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 --EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3334442111 112378999999998888888999999999864
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=99.44 Aligned_cols=97 Identities=13% Similarity=0.237 Sum_probs=68.7
Q ss_pred CeEEEEECCC------CcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCC-------CEEEEEeCC-CCCCCCCCccCCC
Q 004015 248 GMVIVRDIVS------KNVIAQFR-AHKSPISALCFDPSGILLVTASVQG-------HNINIFKII-PGILGTSSACDAG 312 (779)
Q Consensus 248 G~V~VwDl~s------~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DG-------t~I~Vwdi~-~~~~g~~s~~~~~ 312 (779)
..|.+||+.+ ++. ..+. .+...+..++|||||++||.++.++ ..|.+||+. ++
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g----------- 228 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG----------- 228 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS-----------
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC-----------
Confidence 5789999988 554 4555 6667788899999999999887654 458999987 32
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.......+..+. ...+..++|||||+++++++.+++.+||.+..
T Consensus 229 -~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 229 -RFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp -CEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred -cccccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 111222332221 23488999999999888888889666666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.9e-06 Score=87.80 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcC-CCCEEEEEeC---------------CCCEEEEEeCCCCCCCCCCccCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASV---------------QGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSP-dG~lLATaS~---------------DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
+.|.+||+.+++...... .. .+. +.|+| ||++|++++. ....|.+||+..+
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~---------- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK---------- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT----------
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC----------
Confidence 468999998876533221 11 233 89999 9999987652 1235899998764
Q ss_pred CCceeEEEEeecCC-------CcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCCCceeec
Q 004015 312 GTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 312 ~~s~~~l~~l~rG~-------t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~gg~~~~~ 366 (779)
....+... .+. ....+.+++|||||++|+.++. ++...||.+...++...+.
T Consensus 331 --~~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 --SAQKLCKH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp --BCCEEEEC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred --ceEEccCC-CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 12222211 110 0001456899999999988775 5778888877655655553
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00014 Score=79.30 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=66.1
Q ss_pred CCCeEEEEECCCCc--EEEEeccC----------CCCeEEEEEcCCCCEEEEEeCC---------CCEEEEEeCCCCCCC
Q 004015 246 NVGMVIVRDIVSKN--VIAQFRAH----------KSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 304 (779)
Q Consensus 246 ~dG~V~VwDl~s~~--~v~~f~aH----------t~~IsaLaFSPdG~lLATaS~D---------Gt~I~Vwdi~~~~~g 304 (779)
..|.|.+.|+.+.. .+..+.-. ......++|+|||+.|..+..+ +..|.|+|+.+.
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 45788888987552 33333211 1224458899998877665432 234888898764
Q ss_pred CCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCc
Q 004015 305 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGS 362 (779)
Q Consensus 305 ~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~ 362 (779)
+.+.++.-|. ....++|||||+ ++.++. .+++|.|||+.+....
T Consensus 309 -----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 309 -----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred -----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 3344444332 367999999999 677766 5899999999876544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-05 Score=77.37 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=60.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~-~~l~~l~rG~t 326 (779)
+.|..+|.. ++ +..+..+......|+|+|||++|++.+.++ .|.+|++... + .. .....+ .. .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~-~i~~~~~~~~--g---------~~~~~~~~~-~~-~ 216 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN-ATHRYCLNAR--G---------ETEYQGVHF-TV-E 216 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTT-EEEEEEECSS--S---------CEEEEEEEE-CC-S
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCC-eEEEEEECCC--C---------cCcCCCeEe-eC-C
Confidence 455566655 33 344556667789999999999996665555 4899998621 1 12 111122 11 2
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
...+..|+|++||+++++. ++.|.+|+..
T Consensus 217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 2236689999999976666 8899999975
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=82.90 Aligned_cols=93 Identities=8% Similarity=0.014 Sum_probs=63.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEE--EcCCCCEEEEEe----------------------CCCCEEEEEeCCCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALC--FDPSGILLVTAS----------------------VQGHNINIFKIIPGI 302 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLa--FSPdG~lLATaS----------------------~DGt~I~Vwdi~~~~ 302 (779)
++.|.+||+.+++....+..+...+.... ++|||++|+... .+ ..|.+||+.++
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~g- 178 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CRLMRVDLKTG- 178 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EEEEEEETTTC-
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ceEEEEECCCC-
Confidence 35789999999887777776666554444 599999998532 22 34888898765
Q ss_pred CCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC-CCCEEEEEeCCC------eEEEEecC
Q 004015 303 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRG------TSHLFAIN 357 (779)
Q Consensus 303 ~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp-Dg~~LAtgS~DG------TVhIwdl~ 357 (779)
....+.. + ...+..++||| ||++||..+.++ .+.++++.
T Consensus 179 -----------~~~~l~~---~--~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 179 -----------ESTVILQ---E--NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp -----------CEEEEEE---E--SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred -----------ceEEeec---C--CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 2222221 1 23478999999 999999888743 55555654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00016 Score=74.07 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIV-SKN-----VIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~-s~~-----~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.++.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||..++ .....
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g------------~~~~~ 262 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG------------QPKMR 262 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB------------SCSEE
T ss_pred CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCC------------cEeEE
Confidence 46789999986 443 344555554 56888999999999998877765 899987643 11122
Q ss_pred EEeecCCCcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCC
Q 004015 319 YRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 359 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~ 359 (779)
+.+ . ...+.+++|+||+++|.++ ..++.|.+|++...
T Consensus 263 ~~~--~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 263 IRC--P--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEC--S--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EeC--C--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 222 1 1348999999999965555 45689999998754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-05 Score=79.57 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC------EEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt------~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
...|.+||+.+++.+..+.. . .+..++|+||| ++++++.++. ...||.+..+ ....+.
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~------------~~~~l~- 214 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG------------KEEKMF- 214 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT------------EEEEEE-
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC------------ceEEec-
Confidence 35799999999877555555 3 78899999999 8888876531 2456655432 122222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
.+ ..+..+ ||||++|+.++.++
T Consensus 215 --~~---~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 215 --EK---VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp --EE---ESEEEE--EECSSCEEEEECCS
T ss_pred --cC---cceeeE--CCCCCEEEEEEccc
Confidence 11 224443 99999999888654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-05 Score=87.28 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+|.|++||+.+......+..|..+|.++.+.+.. +|+++.||+ +.+||+..+ ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~~--------------~~~-~~~--- 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRTK--------------STK-QLA--- 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTTC--------------CEE-EEE---
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccCC--------------ccc-ccc---
Confidence 45789999999887777788889999999988763 888899997 899999865 111 121
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..|.++||||+| ++.|..||++++|+....
T Consensus 163 --~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 --QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp --ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred --CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 249999999999 788999999999977554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=77.02 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCeEEEEECCCCc-EEEEe---------ccCCCCeEEEEEcC-CCCEEEEEe-CCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 247 VGMVIVRDIVSKN-VIAQF---------RAHKSPISALCFDP-SGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 247 dG~V~VwDl~s~~-~v~~f---------~aHt~~IsaLaFSP-dG~lLATaS-~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
++.|++||..... .+..+ ..+......|+|+| +|.++++.+ .++ .|++|+. .+
T Consensus 111 ~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~-~I~~~~~-~g------------- 175 (329)
T 3fvz_A 111 LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS-RIVQFSP-SG------------- 175 (329)
T ss_dssp TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-EEEEECT-TS-------------
T ss_pred CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-eEEEEcC-CC-------------
Confidence 4567777765442 44555 34556789999999 899999886 455 4899983 32
Q ss_pred eeEEEEee-cCC-------CcccEEEEEEcCC-CCEEEEEeCCCeEEEEecCCC
Q 004015 315 YVHLYRLQ-RGL-------TNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 315 ~~~l~~l~-rG~-------t~a~I~sIaFSpD-g~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+..+. .|. .-.....|+|+|| ++++++...+++|++|+..+.
T Consensus 176 -~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G 228 (329)
T 3fvz_A 176 -KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK 228 (329)
T ss_dssp -CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred -CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence 1222221 111 0112789999999 777788888999999999754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00068 Score=70.32 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=60.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCccCCCCceeE-----EEEe
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVH-----LYRL 321 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATa-S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~-----l~~l 321 (779)
+.|..||..+++... +..+...+..++|+|||++|..+ +.++ .|.+||+... +. .... ...+
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~-~i~~~d~~~~--g~--------~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTAN-RLHRIALEDD--GV--------TIQPFGATIPYYF 229 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGT-EEEEEEECTT--SS--------SEEEEEEEEEEEC
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCC-eEEEEEecCC--Cc--------CcccccceEEEec
Confidence 456666665544332 22333457899999999866544 4455 4899998641 00 0111 1111
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
.+. ..+..|+|++||+++++...++.|.+|+..
T Consensus 230 -~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 230 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 111 247889999999988888888999999873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.1e-05 Score=88.72 Aligned_cols=98 Identities=6% Similarity=-0.036 Sum_probs=63.2
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCC---EEEEEeCCCCCCCCCCccCCCCcee
Q 004015 247 VGMVIVRDIVS------KN-VIAQFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 247 dG~V~VwDl~s------~~-~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt---~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
+..|.+||+.+ +. .+..+..|...+.. .|+|+|+.|+..+.++. .|.+||+..+.. ....
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~ 327 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWK 327 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccce
Confidence 35788888876 43 45667777776665 59999998877665432 477888765300 0012
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. +........|.+++|++++.++++...|+..+||.+.
T Consensus 328 ~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 328 V---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp E---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred e---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 2 2122111348889999888899999999976666554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.11 E-value=6.3e-06 Score=88.97 Aligned_cols=98 Identities=7% Similarity=0.012 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
.++.|.+||..+++.+.++..+..+ .|+|+|||++|.+++. ++ .|.+||+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~-~v~v~d~~t~-------------- 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSD-VVEVWDADKL-------------- 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEE-EEEEEETTTC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCC-EEEEEECcCC--------------
Confidence 4689999999999999999988777 8999999999998863 33 4899998764
Q ss_pred eEEEEeecCC----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCC
Q 004015 316 VHLYRLQRGL----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLG 360 (779)
Q Consensus 316 ~~l~~l~rG~----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~g 360 (779)
..+.++.-+. .......++|||||++|.+++. +++|.|||+.+..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 2223332110 0112457999999999999874 6899999998763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00026 Score=78.25 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCCCeEEEEECCCCc--EEEEec---------c-CCCCeEEEEEcCCCCEEEEEeCC---------CCEEEEEeCCCCCC
Q 004015 245 DNVGMVIVRDIVSKN--VIAQFR---------A-HKSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGIL 303 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~--~v~~f~---------a-Ht~~IsaLaFSPdG~lLATaS~D---------Gt~I~Vwdi~~~~~ 303 (779)
...|.|.+.|+.+.. .+..+. + .-..+..++++|+++.|..+..+ ++.|-++|+.+.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-- 321 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-- 321 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--
Confidence 346899999997664 333222 0 11234458889999988776431 345788898875
Q ss_pred CCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC-EEEEEe-CCCeEEEEecCCCCCceee
Q 004015 304 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~-~LAtgS-~DGTVhIwdl~~~gg~~~~ 365 (779)
+.+.++.-| ..++.|+||+|++ +|.++. .+++|.|+|..++....++
T Consensus 322 ------------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 322 ------------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp ------------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ------------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 334444333 2478999999997 666654 4899999999987655455
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0019 Score=66.90 Aligned_cols=89 Identities=7% Similarity=0.070 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
...+.|+|+|||+.|..++.....|.+|++... .+.. ...+.+..+.. .......+++++||++.++....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~~------~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQI------SNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCCE------EEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCcc------cCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCC
Confidence 446789999999977555543345899987421 1110 01112222221 11347789999999988888888
Q ss_pred CeEEEEecCCCCCceeec
Q 004015 349 GTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 349 GTVhIwdl~~~gg~~~~~ 366 (779)
++|.+|+..+......+.
T Consensus 220 ~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TEEEEECTTTCCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEE
Confidence 999999887544333443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00033 Score=76.78 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=44.4
Q ss_pred EEEEEECCCCcEEEEEeCC-CCEEEEEEc--CcEEEEEe-----------CCeEEEEeCCCCcEEEEEec
Q 004015 65 VVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 65 tVrIWDL~Tge~V~tLkf~-s~V~sV~~s--~rlLaVs~-----------d~~I~IwD~~T~e~l~tl~t 120 (779)
+|.++|+.|++.+.++... .+ .+.++ ++.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 7999999999999999863 45 68886 55565553 57899999999999999864
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-06 Score=93.25 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..||..+++.+..+..+. ...++|++.+|++++.+|+ |..||..++ ..++++..+
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG--------------~~~W~~~~~ 159 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR--------------ELRWNATYF 159 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS--------------SCCCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC--------------CEEEeEecc
Confidence 456889999999999988887664 2467788999999998886 899998876 112222111
Q ss_pred CCcccEEEEEEcCCC---CEEEEEeCCCeEEEEecCCCC
Q 004015 325 LTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg---~~LAtgS~DGTVhIwdl~~~g 360 (779)
. ....+++.+. ..+.+++.||.++.||..++.
T Consensus 160 ~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 160 D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred c----ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 0 1233445543 557788999999999998653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00025 Score=71.07 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=68.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.|.+||..+.........+...+..|+|+++|.++++...++. |.+|+.... ... .....+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~-------------~~~-~~~~~~~- 233 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TST-VLPFTGL- 233 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS-------------CCE-ECCCCSC-
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC-------------cce-eeccCCC-
Confidence 357888888776554433344467899999999988888776766 899987542 111 1111121
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
..+.+|+|++||+++++.+.+++|++|++...
T Consensus 234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred -CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 24789999999999889999999999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00043 Score=70.34 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
++.|.+|| .+++.+..+. .+...+.+|+|+|+|+++++...++. |.+||... ..+..+....
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~g---------------~~~~~~~~~~ 161 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR-VIIFDQNG---------------NVLHKFGCSK 161 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE-EEEECTTS---------------CEEEEEECTT
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE-EEEEcCCC---------------CEEEEeCCCC
Confidence 46788999 5666777775 34567899999999998888776665 89998532 1222332111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
....+..|+|++||+++++.+.+++|++|+..
T Consensus 162 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 162 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred ccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 12247899999999988888889999999973
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00066 Score=79.33 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=67.0
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEEcCCCCEEEEEeCCCCE-EEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 247 VGMVIVRDIVSKN--VIAQFRAHKS--PISALCFDPSGILLVTASVQGHN-INIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 247 dG~V~VwDl~s~~--~v~~f~aHt~--~IsaLaFSPdG~lLATaS~DGt~-I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+|++..+ ..+..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l 375 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------------ALLKIF 375 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------CEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------CEEEec
Confidence 3578899998764 2345555654 68889999999999999999852 556666443 122333
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
... ...|..++|+||++.|+.+.. .+++++||+.+..
T Consensus 376 ~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 221 345889999999987764432 4789999997643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00047 Score=77.16 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=44.6
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE-----------eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-----------QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs-----------~d~~I~IwD~~T~e~l~tl~t 120 (779)
++|.++|+.|++.+.+|.....- .|.++ ++.|.|+ .++.|.++|+.|++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 68999999999999999874333 78996 4555443 256899999999999988853
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=84.40 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=81.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+....++.|.|+|..+++++.++.... .+..+.|||||++|.+++.+|. |.+||+... +...+.++
T Consensus 171 V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~-V~viD~~~~------------t~~~v~~i 236 (567)
T 1qks_A 171 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK-VNMIDLWMK------------EPTTVAEI 236 (567)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSE-EEEEETTSS------------SCCEEEEE
T ss_pred EEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCe-EEEEECCCC------------CCcEeEEE
Confidence 344567999999999999999987443 4668999999999999999886 999998521 11344555
Q ss_pred ecCCCcccEEEEEEc----CCCCEEEEEeCC-CeEEEEecCCCCCceee
Q 004015 322 QRGLTNAVIQDISFS----DDSNWIMISSSR-GTSHLFAINPLGGSVNF 365 (779)
Q Consensus 322 ~rG~t~a~I~sIaFS----pDg~~LAtgS~D-GTVhIwdl~~~gg~~~~ 365 (779)
.-|. ....++|| |||+|+++++.. +++.|||..+......+
T Consensus 237 ~~G~---~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 237 KIGS---EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred ecCC---CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 5453 25689999 799999888764 99999998775444333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0032 Score=66.16 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=114.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCC--EEEEEEcCcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP--IYSVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~--V~sV~~s~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.+|+++|++||+.+.++..+.. ...+.+.++.|.++ .++.|.+||+.|++.+.++..- .+. +
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------g--- 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------G--- 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------C---
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------e---
Confidence 6899999999999999987543 34566665555554 3789999999999998888431 000 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
++ |++ +|..
T Consensus 110 ~g-----lt~-----------------------------Dg~~------------------------------------- 118 (266)
T 2iwa_A 110 WG-----LAT-----------------------------DGKI------------------------------------- 118 (266)
T ss_dssp CE-----EEE-----------------------------CSSS-------------------------------------
T ss_pred EE-----EEE-----------------------------CCCE-------------------------------------
Confidence 11 111 1110
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HK---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
+..++.+++|.++|..+.+.+..+.- +. ..++.|.|. +|++.+....++ .|.
T Consensus 119 ---------------------l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~-~V~ 175 (266)
T 2iwa_A 119 ---------------------LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD-CIA 175 (266)
T ss_dssp ---------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS-EEE
T ss_pred ---------------------EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC-eEE
Confidence 00112357899999999988888772 21 236788998 887766654444 589
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecCC----------CcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRGL----------TNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 359 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~----------t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~ 359 (779)
+.|..++ .+.....+. |. .......|+|+||++.|.++ ...+++.+.++.+.
T Consensus 176 vID~~tg------------~V~~~I~~~-g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDG------------TLLGWILLP-NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTC------------CEEEEEECH-HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCC------------cEEEEEECC-CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9998876 233333332 21 01236899999998765554 46788998888765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0024 Score=66.98 Aligned_cols=164 Identities=9% Similarity=0.096 Sum_probs=106.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEcCcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|+.+|++||+.+.++..+.... .|.+.++.|-+. .++.+.+||+.|++.+.++..-. .|
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG------- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--------EG------- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--------CC-------
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--------Cc-------
Confidence 579999999999999999876653 466654444443 37899999999999999885310 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ |++. +..
T Consensus 130 ~g-----lt~d-----------------------------g~~------------------------------------- 138 (262)
T 3nol_A 130 WG-----LTHN-----------------------------DQY------------------------------------- 138 (262)
T ss_dssp CC-----EEEC-----------------------------SSC-------------------------------------
T ss_pred eE-----EecC-----------------------------CCE-------------------------------------
Confidence 11 0110 100
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccC--C---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--K---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aH--t---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
+..++..+.|.++|..+.+.+.++.-- . ..++.|.|. +|++.|..-.+ ..|.
T Consensus 139 ---------------------L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~-~~I~ 195 (262)
T 3nol_A 139 ---------------------LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT-NKIV 195 (262)
T ss_dssp ---------------------EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS-SEEE
T ss_pred ---------------------EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC-CeEE
Confidence 011123467999999999888887642 2 345668887 88877655444 4588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeecC--------CCcccEEEEEEcCCCCEEEEEeCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQRG--------LTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG--------~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
+.|..++ .+...+.+..- ........|||+|+++.|.+.+..
T Consensus 196 vIDp~tG------------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETG------------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTC------------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCC------------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 8888776 34444444210 111246889999999988887764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00052 Score=80.06 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-C--EEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 247 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG-H--NINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 247 dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t--~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
...|++|++.++. ++.....|...+..+.|||||++|+.++.++ . .|.+|+...+ ....+.
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------------~~~~l~ 268 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------------DFRLLV 268 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------------SCEEEE
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------------ceEEee
Confidence 3479999998765 4445556777899999999999998877665 2 2445543221 123322
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
. +. ..+....| +||+ |+..+. +++|.+|++...+
T Consensus 269 ~---~~--~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 269 K---GV--GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp E---CS--SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred c---CC--CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 2 11 12445556 6777 555444 5789999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00055 Score=68.50 Aligned_cols=94 Identities=10% Similarity=0.008 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|.+||..+.........+...+..|+|+++|+++++...++. |.+||.... ........+.
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~--------------~~~~~~~~~~-- 191 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN--------------NQVVLPFTDI-- 191 (270)
T ss_dssp TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTC--------------CEEECCCSSC--
T ss_pred CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCC--------------ceEeecccCC--
Confidence 45666665444332222233346788999999998887766654 899997643 1111111111
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
..+.+|+++++|+++++...++.|.+|+...
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred CCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 3478999999998888877889999998753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=75.41 Aligned_cols=88 Identities=8% Similarity=0.052 Sum_probs=63.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
...++.|.+||..++ +..+..+...+.+|+|+|+|+++++...++. |.+||..++ ....+.....
T Consensus 46 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~-i~~~d~~~g------------~~~~~~~~~~ 110 (296)
T 3e5z_A 46 DVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR-LERQREPGG------------EWESIADSFE 110 (296)
T ss_dssp EGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE-EEEECSTTC------------CEEEEECEET
T ss_pred eCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe-EEEEcCCCC------------cEEEEeeccC
Confidence 345688999999987 6778888889999999999999888766654 899998664 2222222212
Q ss_pred CCCcccEEEEEEcCCCCEEEEEe
Q 004015 324 GLTNAVIQDISFSDDSNWIMISS 346 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS 346 (779)
+.....+.+++|+|||+++++.+
T Consensus 111 ~~~~~~~~~i~~d~~G~l~vtd~ 133 (296)
T 3e5z_A 111 GKKLNSPNDVCLAPDGSLWFSDP 133 (296)
T ss_dssp TEECCCCCCEEECTTSCEEEEEC
T ss_pred CCCCCCCCCEEECCCCCEEEECC
Confidence 21122367899999999988743
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00025 Score=75.37 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=43.8
Q ss_pred CEEEEEECCCCcEEEEEeCC-------CCEEEEEEc--CcEEEEE-----eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFR-------SPIYSVRCS--SRVVAIC-----QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~-------s~V~sV~~s--~rlLaVs-----~d~~I~IwD~~T~e~l~tl~t 120 (779)
.+|.+||+++++.++++.++ +.+.+|+++ +..+.++ .+..|++||+.+++....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 67999999999999999874 246888996 3454443 467999999999887666644
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0022 Score=72.29 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC---------c---ccEEEEEEc
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT---------N---AVIQDISFS 336 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t---------~---a~I~sIaFS 336 (779)
.....|.+||||++|-.+......|.+||+... + ..+.+..+.-|-. . ..-+.+++|
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~--~---------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP--F---------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSST--T---------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCC--C---------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 346789999999999888876667999998632 0 1233444443311 0 013689999
Q ss_pred CCCCEEEEEe------------CCCeEEEE--ecCCCCCceeec
Q 004015 337 DDSNWIMISS------------SRGTSHLF--AINPLGGSVNFQ 366 (779)
Q Consensus 337 pDg~~LAtgS------------~DGTVhIw--dl~~~gg~~~~~ 366 (779)
|||++|.++. .+..+.++ ++.+.+| .++.
T Consensus 390 pDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 390 RDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp TTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 9999999999 23344454 7787777 5553
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0025 Score=75.01 Aligned_cols=57 Identities=4% Similarity=-0.008 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
|..||+.++ +.++++..+. .+....++.++..+++++.||++++||+.+....-.+.
T Consensus 459 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 459 LLAWDPVAQ--------------KAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCC--------------cEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 777887765 4566654432 24566688889999999999999999999876555554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00028 Score=73.49 Aligned_cols=97 Identities=10% Similarity=0.138 Sum_probs=75.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++.+..++.|.+||..+++.+.++..|. ..+.++.++|+|++|++ .++. |..||. ++ ..++
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~-V~~~d~-~G--------------~~~W 69 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG-AKMITR-DG--------------RELW 69 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE-EEEECT-TS--------------CEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC-EEEECC-CC--------------CEEE
Confidence 4556788999999999999999999876 57899999999999994 3433 889987 54 4566
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEec
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAI 356 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl 356 (779)
++..+. ...+.++.+.+||++|++.+. ++++..|+.
T Consensus 70 ~~~~~~-~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~ 106 (276)
T 3no2_A 70 NIAAPA-GCEMQTARILPDGNALVAWCGHPSTILEVNM 106 (276)
T ss_dssp EEECCT-TCEEEEEEECTTSCEEEEEESTTEEEEEECT
T ss_pred EEcCCC-CccccccEECCCCCEEEEecCCCCEEEEEeC
Confidence 665431 235889999999999999887 666655553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0021 Score=67.61 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEc-CcEEEEE-eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCS-SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s-~rlLaVs-~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
+.|+.+|++||+.+.++ ++.... .|.+. +++.+.. .++.+.+||+.|++.+.++..-+ .|
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~--------eG------- 138 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG--------EG------- 138 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS--------CC-------
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC--------ce-------
Confidence 56999999999999999 866654 36775 4444433 47899999999999999985310 00
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.+ |++. |.
T Consensus 139 wG-----Lt~D-----------------------------g~-------------------------------------- 146 (268)
T 3nok_A 139 WG-----LCYW-----------------------------NG-------------------------------------- 146 (268)
T ss_dssp CC-----EEEE-----------------------------TT--------------------------------------
T ss_pred eE-----EecC-----------------------------CC--------------------------------------
Confidence 11 1111 00
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc--CC---CCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HK---SPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a--Ht---~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
.+..++..+.|.++|..+.+.+.+++- +. ..++.|.|. +|++.|..-.+ ..|.
T Consensus 147 --------------------~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s-~~I~ 204 (268)
T 3nok_A 147 --------------------KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS-SDVL 204 (268)
T ss_dssp --------------------EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC-SEEE
T ss_pred --------------------EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC-CeEE
Confidence 001112356899999999988888763 22 245678887 88877655444 4588
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEee---------cCCCcccEEEEEEcCCCCEEEEEeC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~---------rG~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
+.|..++ .+...+.+. +.........|||+|+++.|.+.+.
T Consensus 205 vIDp~TG------------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATG------------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTC------------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCC------------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 8898776 344445542 1111234688999998777766654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0017 Score=76.38 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+.+++. ..++....+..+|.+++.++.||+ +++||+.++ +.++++.-+.
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 518 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGT 518 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCc-EEEEECCCC--------------ceeeeeeCCC
Confidence 348999999999999988863 345555667888889999999987 899999886 4555554332
Q ss_pred CcccEEEEEEcCCCCE-EEEEeC
Q 004015 326 TNAVIQDISFSDDSNW-IMISSS 347 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~-LAtgS~ 347 (779)
. ..-.-+.|++||+. +++.+.
T Consensus 519 ~-~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 519 G-VVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp C-CCSCCEEEEETTEEEEEEEEC
T ss_pred C-cccCCEEEEeCCEEEEEEecc
Confidence 1 11234677889874 444333
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00093 Score=69.30 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=69.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~D----Gt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
...++.|.+||..+++....+..+...+.+|+|+|+|+++++...+ +. |.+||.... ....+
T Consensus 62 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~-i~~~d~~~~------------~~~~~- 127 (333)
T 2dg1_A 62 DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG-IFAATENGD------------NLQDI- 127 (333)
T ss_dssp ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE-EEEECTTSC------------SCEEE-
T ss_pred ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce-EEEEeCCCC------------EEEEE-
Confidence 3456899999999887665554667889999999999999887765 34 888987654 11211
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~g 360 (779)
+........+.+++|+|||+++++... ++...||.+...+
T Consensus 128 -~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 128 -IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp -ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred -EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 111112235899999999998876654 2345666665543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.018 Score=59.65 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEE--EEEEc-CcEEEEE-eCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCS-SRVVAIC-QAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~--sV~~s-~rlLaVs-~d~~I~IwD~~T~e~l~tl~t 120 (779)
..|+.+|++||+.+.++..+.... .|.+. +++.++. .++.+.+||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 679999999999999999876653 44554 4444443 478999999999999998853
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.012 Score=64.59 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCcEEEE----eccCCCC--eEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 247 VGMVIVRDIVSKNVIAQ----FRAHKSP--ISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~----f~aHt~~--IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++.|..||..++..... ..++... .+.|+|+|+ |.++++-... +.|..|+.... ...+.
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~-------------~~~~~ 304 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE-------------CEWFC 304 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC-------------EEEEE
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC-------------EEEEE
Confidence 46788888877653222 2222222 248999995 5555554444 45888875431 11111
Q ss_pred Ee--ecCCC--------cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeecc
Q 004015 320 RL--QRGLT--------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 320 ~l--~rG~t--------~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~~ 367 (779)
-. ..|.. -.....|+|+|||+++++-+ ..++|++|++.. +....+.+
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~v~~~~g 362 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-GYVSTVAG 362 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT-TEEEEEEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-CEEEEEeC
Confidence 00 00100 12268999999999888877 889999999754 33334433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.047 Score=57.35 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=58.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCC-CCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g-~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|..+| +++. ..+..+......++|+|||+.|..++.....|.+||+... .+ ... ....+..+. + .
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-~Gl~~~------~~~~~~~~~-~-~ 228 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-TGLPTG------KAEVFIDST-G-I 228 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-TCCBSS------CCEEEEECT-T-S
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-cCCccc------CceEEEECC-C-C
Confidence 4455556 3433 2333333456789999999977665544345899997521 11 100 112222221 1 1
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+..+++++||++.++...++.|.+|+.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 123678999999998877777888999987
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0075 Score=70.88 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCc-eeE
Q 004015 247 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTS-YVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s-~~~ 317 (779)
...|.+|++.++. .+.....|...+..+.|||||++|+..+.++ ..|.+||+..+ ... ...
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~----------~~~~~~~ 311 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG----------KIGPVTA 311 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT----------EECCCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC----------CCcccEE
Confidence 3468889987664 3333334445688999999999998877654 35888887643 001 122
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEEEEEeCCC----eEEEEecCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 359 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG----TVhIwdl~~~ 359 (779)
+..+. .. +... ++|||++|+..+.++ .+.+|++...
T Consensus 312 ---l~~~~-~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 312 ---LIPDL-KA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp ---EECSS-SS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred ---ecCCC-Cc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 22221 12 3333 359999999988754 4889998764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00044 Score=76.42 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=74.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
++.|.++|..+++.+.++..-..+ . |+|||||++|..++. +...|.+||..+. ..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------------~v 121 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------------LP 121 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CE
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------eE
Confidence 579999999999999999866666 4 999999998877652 1234999999875 22
Q ss_pred EEEeecCC-----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCCceee
Q 004015 318 LYRLQRGL-----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 318 l~~l~rG~-----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~gg~~~~ 365 (779)
+.++.-+. ....-..++|||||++|.+++. +++|.|+|+.+..-...+
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 33332111 1112346999999999998874 689999999886443333
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0037 Score=73.58 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=63.9
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~--~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
.+.|.+||+.++ .....+..+...+..++|+ ++.++++...+|. .+||.+... + ..+..+.-
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~--g-----------~~~~~l~~- 403 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD--G-----------KPAGAVSL- 403 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT--S-----------CEEEECBC-
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC--C-----------CceeeccC-
Confidence 467889998874 3444455555667788888 7788899999986 677765421 0 12223321
Q ss_pred CCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~ 359 (779)
.....|..++|+||++.|+.... .+++++||+.+.
T Consensus 404 ~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 404 PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 11234889999999987664432 478999998653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.019 Score=60.37 Aligned_cols=85 Identities=15% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCeEEEEECC--CC-c-----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 247 VGMVIVRDIV--SK-N-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 247 dG~V~VwDl~--s~-~-----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+.|.+||+. ++ . .+..+..+......++++++|.++++....+. |.+|+.. + ..+
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~~-g--------------~~~ 263 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDTD-G--------------NHI 263 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECTT-C--------------CEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECCC-C--------------CEE
Confidence 3566777764 33 2 23344444456788999999998887765554 8888863 2 122
Q ss_pred EEeecCCCcccEEEEEEc-CCCCEEEEEeCCC
Q 004015 319 YRLQRGLTNAVIQDISFS-DDSNWIMISSSRG 349 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaFS-pDg~~LAtgS~DG 349 (779)
..+.-. ...+.+++|+ +|++.|.+++.++
T Consensus 264 ~~i~~~--~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 264 ARYEVP--GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECS--CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECC--CCCcEEEEEecCCCCEEEEEecCC
Confidence 222211 2348999998 9998887666543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.032 Score=55.84 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++.... +..+...+..|+|+++|+++++...++. |.+||. .+ ... .+.+..
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~~~-~~~~~~-- 222 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SG------------EIT-EFKIPT-- 222 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------CEE-EEECSS--
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CC------------cEE-EEECCC--
Confidence 356777777 5544332 3344567889999999998887665554 889987 44 111 222221
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
....+.+|+++++|+++++...++.|.+|+.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1234889999999997777667899999987
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.031 Score=55.95 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=62.0
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++... .+..+...+..|+++++|+++++...++. |.+||. .+ .... +.+..+
T Consensus 119 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~~~~-~~~~~~- 181 (299)
T 2z2n_A 119 GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA-IGRITE-SG------------DITE-FKIPTP- 181 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE-EEEECT-TC------------CEEE-EECSST-
T ss_pred CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE-EEEEcC-CC------------cEEE-eeCCCC-
Confidence 356777777 433322 22334567899999999999887766554 788887 43 1111 222211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+.+++++++|+++++...++.+.+|+.
T Consensus 182 -~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 182 -ASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp -TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred -CCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 234789999999998777777889999987
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00088 Score=78.14 Aligned_cols=110 Identities=9% Similarity=0.009 Sum_probs=70.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCC------------EEEEEeCCCCCCCCCCccC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPI--SALCFDPSGILLVTASVQGH------------NINIFKIIPGILGTSSACD 310 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~I--saLaFSPdG~lLATaS~DGt------------~I~Vwdi~~~~~g~~s~~~ 310 (779)
..+..|+|||+.+++.+. ..+...+ ..++|+|||+.|+.++.+.. .|.+|++.++.
T Consensus 144 ~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~-------- 213 (695)
T 2bkl_A 144 ADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP-------- 213 (695)
T ss_dssp CSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--------
T ss_pred CceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--------
Confidence 345789999999988651 1122222 67999999999999988653 38999987640
Q ss_pred CCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC--eEEEEecCCC-CCceeeccC
Q 004015 311 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPL-GGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG--TVhIwdl~~~-gg~~~~~~H 368 (779)
.....++... .....+.+++|||||++|++++.++ +..||-+... +....+..+
T Consensus 214 --~~~~lv~~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 214 --SKDTVVHERT--GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp --GGCEEEECCC--CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred --hhceEEEecC--CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 0113333321 1123478999999999999988776 4444444332 234445444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.017 Score=65.00 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC--e-EEEEEcCCCCEEEEEe------------------CCCCEEEEEeCCCCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSP--I-SALCFDPSGILLVTAS------------------VQGHNINIFKIIPGIL 303 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~--I-saLaFSPdG~lLATaS------------------~DGt~I~Vwdi~~~~~ 303 (779)
...|.|.++|..+.+++.+++.-..+ + ..+-|+|+++.|+|+. ..+..|.+||+..+
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-- 238 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-- 238 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence 34588999999999999999733222 2 2478899999999986 34667999999864
Q ss_pred CCCCccCCCCceeEEEEeecCCCcccEEEEEE--cCCCCEEEEEe------CCCeEEEEecCC
Q 004015 304 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISF--SDDSNWIMISS------SRGTSHLFAINP 358 (779)
Q Consensus 304 g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaF--SpDg~~LAtgS------~DGTVhIwdl~~ 358 (779)
..+.++.-|........|.| +||++++.+++ .+++|.+|....
T Consensus 239 ------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 239 ------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 34445544422122445655 99999988887 567999988864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.025 Score=66.65 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 293 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 293 I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
|..||+.++ +.++++..+. .+..-.++..+..|++++.||.+++||..++...-.++.
T Consensus 457 l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 457 LIAWDPVKQ--------------QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCC--------------CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 677777665 4555554432 233446777888999999999999999998755555544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0024 Score=69.50 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=68.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|.+||..+++.+.++..-..+ .++|||||++|..+.. +...|.+||..+. ..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------------~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------------LPIA 111 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------------cEEE
Confidence 8999999999999988865555 9999999999988863 1234889998764 1222
Q ss_pred EeecC-----CCcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCC
Q 004015 320 RLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPL 359 (779)
Q Consensus 320 ~l~rG-----~t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~ 359 (779)
++.-+ .+...-..++|||||++|.+++. +++|.|+| .+.
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 22111 00011347999999999999884 47899999 654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.013 Score=68.88 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=42.8
Q ss_pred CEEEEEECCCCcEEEEEeCCCC-----------E-EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSP-----------I-YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~-----------V-~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+++.... + ..+.. .+++++.+.++.|+++|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 5689999999999999875322 1 12333 35555556799999999999999988865
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.12 Score=54.68 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=63.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+..+|.|..+|..+++.+..... .....+..+ +..|..++.+|. +..||..++ ..+++
T Consensus 242 v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~tG--------------~~~w~ 302 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDGG--------------VTLWT 302 (376)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTTC--------------CEEEE
T ss_pred EEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCCC--------------cEEEe
Confidence 33445678999999999998877653 334555443 556666677777 889998876 34454
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.... ....+..... .+..|.+++.+|.+++||..++.
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 4311 0111222222 25678899999999999998753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.31 Score=51.38 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=44.1
Q ss_pred CEEEEEECCCCcEEEEEeCC----------CCEE-EEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecC
Q 004015 64 TVVHFYSLRSQSYVHMLKFR----------SPIY-SVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~----------s~V~-sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
+.|..||.++|+.+.+.... ..+. .+... +++++.+.++.|++||+.|++.+.+....
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 57999999999999988873 3333 33344 55555677889999999999998887653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.098 Score=52.30 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=60.3
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+||. +++... .+..+...+..|+++++|.++++....+. |.+|+. .+ . ...+.+..+
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~- 228 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TG------------E-ISEYDIPTP- 228 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSST-
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CC------------c-EEEEECCCC-
Confidence 356677776 343332 12234467899999999998887665544 788886 32 1 112222211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 326 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+.+|+++++|+..++...++.|.+|+.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 234889999999997777667789999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=72.09 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=69.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEe---------CCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---------VQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS---------~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.|.|+|..+++.+.++..-..| .+.|||||++|..+. .++..|.+||+.+. ..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------------~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------------LPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------------CEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------CEEE
Confidence 8999999999999999855567 799999999888876 22345999999876 2333
Q ss_pred EeecC--C---CcccEEEEEEcCCCCEEEEEeC--CCeEEE--EecCC
Q 004015 320 RLQRG--L---TNAVIQDISFSDDSNWIMISSS--RGTSHL--FAINP 358 (779)
Q Consensus 320 ~l~rG--~---t~a~I~sIaFSpDg~~LAtgS~--DGTVhI--wdl~~ 358 (779)
++.-+ . .......++|||||+||.++.. ..++.| +|+.+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 43222 0 0011347999999999999975 467888 88866
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00016 Score=78.31 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=43.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC-eE-EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSP-IS-ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~-Is-aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
..+|.|..||..+++.+..++.+... +. +..++ ++.+|++++.+|+ |..||..++ ..++++.
T Consensus 56 s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~-v~a~D~~tG--------------~~~w~~~ 119 (369)
T 2hz6_A 56 PNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDI-WYVIDLLTG--------------EKQQTLS 119 (369)
T ss_dssp TTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEE-EEEECCC-----------------------
T ss_pred CCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCE-EEEEECCCC--------------cEEEEec
Confidence 35678888888888776666543211 10 01112 3445677777876 899999876 3344443
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 361 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg 361 (779)
.+. .+.++|++..|++++.|++++.||..++..
T Consensus 120 ~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 120 SAF------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSSSC
T ss_pred CCC------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 221 245678999999999999999999987543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.029 Score=61.58 Aligned_cols=76 Identities=12% Similarity=0.199 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe--ecCC--------CcccEEEEEEcCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--QRGL--------TNAVIQDISFSDDS 339 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l--~rG~--------t~a~I~sIaFSpDg 339 (779)
....|+|+|+|.++++-+...+.|++|++..+ .+..+.-. ..|. .-.....|+|++||
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G------------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG------------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTTT------------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC------------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 46789999999977665504456999997654 11111100 0010 01237899999999
Q ss_pred CEEEEEeCCCeEEEEecC
Q 004015 340 NWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 340 ~~LAtgS~DGTVhIwdl~ 357 (779)
.++++-...++|+.++++
T Consensus 392 ~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEESTTCEEEEEEEC
T ss_pred CEEEEECCCCeEEEEEeC
Confidence 888888888999988763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0075 Score=70.02 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=67.3
Q ss_pred CeEEEEECCC--CcE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCC---CCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIVS--KNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---LGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~s--~~~-v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~---~g~~s~~~~~~s~~~l~~l 321 (779)
+.|.|.|.++ ++. +..+..- ...-++.|+|||+++..++.....|.|+|+.+.. .+.. .. .......+
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l---~~--~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA---DP--RSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC---CG--GGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc---Cc--ccceEEEc
Confidence 4599999998 555 5666532 2345699999999988888766669999987420 0000 00 00122344
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.-|. .-.-++|+|||....+.-.|++|-+|++..
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4443 257899999994445666799999999976
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.11 Score=51.84 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=59.4
Q ss_pred CeEEEEECCCCcEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v-~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|..||.. ++.. ..+......+.+|+++++|+++++....+. |.+|+. .+ ... .+.+...
T Consensus 125 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~~~-~~~~~~~-- 186 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS-IGRITN-TG------------KLE-EYPLPTN-- 186 (300)
T ss_dssp TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------CEE-EEECSST--
T ss_pred CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe-EEEECC-CC------------cEE-EeeCCCC--
Confidence 456666665 3333 123334467899999999997777655554 788886 33 112 1222111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+..|+++++|++.++....+.|.+|+.
T Consensus 187 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 187 AAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 234889999999988877777788988887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.018 Score=67.39 Aligned_cols=95 Identities=6% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 247 VGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 247 dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~D-Gt-~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....+ |. .|.+|++... ....+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------------~~~~l~ 366 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------------RVREVA 366 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------------EEEEEC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------------eeEEee
Confidence 36788889887654 345667776665 999999988766554 32 3778887532 122222
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCC----CeEEEEecCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 359 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~D----GTVhIwdl~~~ 359 (779)
-. ....+..+++++|++.|+....+ ++++.||+...
T Consensus 367 ~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 367 LP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred cC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 11 12347788899999988777665 78999998653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.039 Score=64.61 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=43.3
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE------------EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPI------------YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V------------~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|++||+.+.+++..... ..+.+ .+++++.+.++.|+++|+.|++.+.++..
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 67899999999999998763221 22333 45555556789999999999999988865
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.09 Score=54.28 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=55.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----CEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
+.|..||..+++..... +......|+|+|||+.|..++... ..|.+|++... .......+.
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------------~l~~~~~~~ 234 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------------ALHDRRHFA 234 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------------EEEEEEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------------CccCCeEEE
Confidence 56777787666543332 334567899999999887776652 35889987643 011111111
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.. .......|++++||++.++ +.+ .|++|+.
T Consensus 235 ~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 235 SV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp CC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred EC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 10 1122457899999995544 444 4888776
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.078 Score=55.52 Aligned_cols=102 Identities=6% Similarity=-0.074 Sum_probs=67.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee---
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 322 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~--- 322 (779)
.++.|.++|..+.+.+.+|..- .+. ...+++||+.|.++...+ .|.++|..+. ..+.++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~-~l~viD~~t~--------------~v~~~I~Vg~ 146 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTS-ILYEIDPHTF--------------KLIKKHNVKY 146 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSS-EEEEECTTTC--------------CEEEEEECEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCC-eEEEEECCCC--------------cEEEEEEECC
Confidence 4578999999999999998632 111 244667888777766554 4899997764 2222322
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++..-..+..+.|. |++..+....+++|.+-|..+..-...+
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 22211236788898 8876666667889999999876443333
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0027 Score=70.96 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=72.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
+.|.++|..+.+.+.++..-..| .|+|||||++|..+.. ++..|.++|..+. ..+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------------~vv 162 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------------LPI 162 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------------cEE
Confidence 79999999999999999865567 8999999998877763 2235899998875 222
Q ss_pred EEeecC-C----CcccEEEEEEcCCCCEEEEEeC--CCeEEEEecCCCCC
Q 004015 319 YRLQRG-L----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGG 361 (779)
Q Consensus 319 ~~l~rG-~----t~a~I~sIaFSpDg~~LAtgS~--DGTVhIwdl~~~gg 361 (779)
.++.-+ . .......++|||||++|.+++. +++|.|.|+.+..-
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 333211 0 0011346899999999999874 58999999987643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.88 E-value=0.016 Score=59.89 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+.|..||..+++. ..+ .+...+.+|+|+|+|+++++. .+ .|.+||..++ ....+.....+.
T Consensus 33 ~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~~-~~--~l~~~d~~~g------------~~~~~~~~~~~~ 95 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVATI-GT--KFCALNWKEQ------------SAVVLATVDNDK 95 (297)
T ss_dssp TTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEEE-TT--EEEEEETTTT------------EEEEEEECCTTC
T ss_pred CCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEEE-CC--eEEEEECCCC------------cEEEEEecCCCC
Confidence 457899999988765 233 244689999999999977664 33 3889998764 223333332222
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---------CCeEEEEecCCCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGG 361 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---------DGTVhIwdl~~~gg 361 (779)
....+.+++|+|||+++++... .....||.+.+.+.
T Consensus 96 ~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 2234889999999997766543 24567888876543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.054 Score=63.44 Aligned_cols=86 Identities=13% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..||+.+++.+..++.+. ++....+...|.+|+.++.||. +++||..++ +.++++.-+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG--------------~~l~~~~~~ 498 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQ 498 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECS
T ss_pred CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhcC--------------hhheEecCC
Confidence 356899999999999988877543 3333445567888999999987 899999876 445555433
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSS 347 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~ 347 (779)
.. ..-.-+.+..||+ |+++++.
T Consensus 499 ~~-~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 499 SG-IVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEEC
T ss_pred CC-cccCceEEEECCEEEEEEEec
Confidence 11 0112355667777 6666653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.071 Score=56.02 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=67.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-ecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-~rG 324 (779)
.++.+.+||..+.+.+.+|..-... ..|+ +||+.|..++..+ .|.++|..+. ........ .++
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~-~l~~iDp~T~------------~v~~~I~V~~~g 177 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGT-MLTFHEPDGF------------ALVGAVQVKLRG 177 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSS-EEEEECTTTC------------CEEEEEECEETT
T ss_pred cCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCC-EEEEEcCCCC------------eEEEEEEeCCCC
Confidence 4578999999999999999853222 2333 6788888777654 4888887764 12221222 223
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..-..+..+.|. ||+..|....+.+|.+-|..+..-...+
T Consensus 178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 222236778888 8877776667889999888765433333
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.062 Score=56.28 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee-cC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~-rG 324 (779)
.++.+.+||..+.+.+.+|..-... ..+++||+.|..++..+ .|.++|..+. ......... .|
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~-~i~~iDp~T~------------~v~~~I~V~~~g 168 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTP-VLRFLDPESL------------TPVRTITVTAHG 168 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSS-EEEEECTTTC------------SEEEEEECEETT
T ss_pred eCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCC-eEEEEcCCCC------------eEEEEEEeccCC
Confidence 4578999999999999999853322 34446777777766554 4888887764 112212221 12
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.....+..+.|. ||+..|..-.+.+|.+.|..+..-...+
T Consensus 169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 111235678887 7887777767889998888765433333
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.11 Score=59.61 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=23.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 334 SFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 334 aFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+...+..|.+++.||.+++||..++...-.++
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 334456677889999999999998765444443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.075 Score=61.36 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=55.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+..++.+. ++..-.....|.+++.++.||+ |+.||..++ +.+++++-+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG--------------~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSG--------------KELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCCC--------------CEEEEecCCC
Confidence 46899999999999988876442 2221112224667888999987 899999887 5666665432
Q ss_pred CcccEE--EEEEcCCCC-EEEEEeC
Q 004015 326 TNAVIQ--DISFSDDSN-WIMISSS 347 (779)
Q Consensus 326 t~a~I~--sIaFSpDg~-~LAtgS~ 347 (779)
.|+ -+.|..||+ ||++.+.
T Consensus 528 ---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 ---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ---CcccCceEEEECCEEEEEEEcc
Confidence 222 367778887 5555543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.019 Score=67.14 Aligned_cols=109 Identities=9% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCC------------CEEEEEeCCCCCCCCCCccCCC
Q 004015 246 NVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG------------HNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DG------------t~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.+. ..|.+|++.+..
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~---------- 219 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ---------- 219 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG----------
T ss_pred ceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc----------
Confidence 346899999999986543 2221 12467899 999999888773 347888876540
Q ss_pred CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC----CeEEEEecCCCC-CceeeccC
Q 004015 313 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPLG-GSVNFQPT 368 (779)
Q Consensus 313 ~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D----GTVhIwdl~~~g-g~~~~~~H 368 (779)
..-..++... ......+.+++|||||++|+..+.+ ..++++++.... ....+..+
T Consensus 220 ~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 220 EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 0113344321 1012236789999999999776543 478999987654 33445444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.44 Score=49.27 Aligned_cols=103 Identities=9% Similarity=-0.036 Sum_probs=65.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-ecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-~rG 324 (779)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..++.+++ |.++|..+. .......+ ..|
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~-l~~iDp~t~------------~~~~~I~V~~~g 146 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAV-IRKLDPDTL------------QQVGSIKVTAGG 146 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSE-EEEECTTTC------------CEEEEEECEETT
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCe-EEEEeCCCC------------eEEEEEEEccCC
Confidence 4578999999999999999854333 333466777766666554 888987764 11221222 122
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..-..+..+.|. +|+..|..-.+..|.+-|..+..-.-.+
T Consensus 147 ~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 147 RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence 211236677776 7877766667788888888775443343
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.013 Score=59.68 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCcEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE-E
Q 004015 246 NVGMVIVRDIVSKNVIAQFR----AHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL-Y 319 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~----aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l-~ 319 (779)
.++.|.+||..+++...... ++...+.+|+|+++ |+++++...+ .|.+||.. + ....+ .
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~--~l~~~d~~-g------------~~~~~~~ 108 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL--GLLVVQTD-G------------TFEEIAK 108 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT--EEEEEETT-S------------CEEECCS
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC--CEEEEeCC-C------------CEEEEEe
Confidence 45789999988876542221 25567999999999 8877766544 37889876 4 11111 1
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~D 348 (779)
....+.....+.+|+|++||+++++...+
T Consensus 109 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 137 (314)
T 1pjx_A 109 KDSEGRRMQGCNDCAFDYEGNLWITAPAG 137 (314)
T ss_dssp BCTTSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred ccCCCccccCCcCEEECCCCCEEEEecCc
Confidence 11111112247899999999988777655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.028 Score=58.17 Aligned_cols=84 Identities=11% Similarity=-0.077 Sum_probs=56.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...+.|..||.. ++ +..+..+...+..++|+++|+++++...++. |.+|+.. + ....+.....+
T Consensus 64 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g------------~~~~~~~~~~~ 127 (305)
T 3dr2_A 64 LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-G------------QAHLLVGRYAG 127 (305)
T ss_dssp TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-S------------CEEEEECEETT
T ss_pred CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-C------------CEEEEEeccCC
Confidence 456789999984 44 4566667778999999999997776554444 7888864 3 12222222222
Q ss_pred CCcccEEEEEEcCCCCEEEE
Q 004015 325 LTNAVIQDISFSDDSNWIMI 344 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAt 344 (779)
.....+.+++|+|||+++++
T Consensus 128 ~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 128 KRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp EECSCCCCEEECTTSCEEEE
T ss_pred CccCCCCCEEECCCCCEEEe
Confidence 11123678999999998886
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.15 Score=59.29 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------CEEEEEeCCCCC----CCCC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--------------HNINIFKIIPGI----LGTS 306 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG--------------t~I~Vwdi~~~~----~g~~ 306 (779)
..++.|.+.|..+.+++.++.--. .-.-++++|||+++.+++.+. ..|.|++..... .|..
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 456889999999999999887322 235588999999999998664 235666543210 0000
Q ss_pred ------CccCCCC--ceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCC
Q 004015 307 ------SACDAGT--SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 359 (779)
Q Consensus 307 ------s~~~~~~--s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~ 359 (779)
+.-+... ....+..+.-|.. ..++.|||||+|+.+++ .+.+|.|+|+.+.
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eEECcEEEEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 0000000 0000111212211 34799999999887776 5789999999854
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.08 Score=55.90 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEEcCC-CCEEEEEe---CCCCEEEEEeCCCCCCCCC-----C-ccC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPS-GILLVTAS---VQGHNINIFKIIPGILGTS-----S-ACD 310 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aH------t~~IsaLaFSPd-G~lLATaS---~DGt~I~Vwdi~~~~~g~~-----s-~~~ 310 (779)
.+.|.+||+.+++.+.++..+ ...+..|+|+|+ |.++++-+ .++ .|.+||+.++..... . ..+
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~-~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA-ALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC-EEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC-eEEEEECCCCCEEEEecCCCccccc
Confidence 467999999999877776532 235689999986 55556654 454 489999876411000 0 000
Q ss_pred CC---CceeEEEEeec-CC---CcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 311 AG---TSYVHLYRLQR-GL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 311 ~~---~s~~~l~~l~r-G~---t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
+. .....++.... |. ....+..|+||||+++|..+..++. +||.+.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 00 00000000000 00 0012578999999999999888774 566654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.23 Score=57.09 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||+.+++.+.+++... ++....+...|.++..++.||+ |.+||..++ +.++++.-+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGY-LKALDNKDG--------------KELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCe-EEEEECCCC--------------CEEEEEeCCC
Confidence 45899999999999988876432 2322333344566777889987 899999876 4566665442
Q ss_pred CcccEEEEEEcCCCCEE
Q 004015 326 TNAVIQDISFSDDSNWI 342 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~L 342 (779)
.. .-.-+.|..||+.+
T Consensus 506 ~~-~~~p~~~~~~G~~y 521 (571)
T 2ad6_A 506 GG-IGSPMTYSFKGKQY 521 (571)
T ss_dssp CC-CSCCEEEEETTEEE
T ss_pred Cc-EeeeEEEEECCEEE
Confidence 11 11224466777643
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.66 E-value=2.3 Score=46.30 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCeEEEEECC-------CCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~-------s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
.+|.+..|++. +.+.+++|.-- +.+-.+.+++....|..+-++ . -||.+...+.+. .+...+
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~--GIw~~da~p~~~-------~~~~~v 219 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-E--AIWKFSAEPDGG-------SNGTVI 219 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-T--EEEEEECSTTSC-------SCCEEE
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-c--eEEEEeCCcCCC-------CCceEE
Confidence 34677777662 34667777743 467888899987788888887 3 355554221110 012333
Q ss_pred EEeecCCCcccEEEEEE--cCCCC-EEEEEe-CCCeEEEEecC
Q 004015 319 YRLQRGLTNAVIQDISF--SDDSN-WIMISS-SRGTSHLFAIN 357 (779)
Q Consensus 319 ~~l~rG~t~a~I~sIaF--SpDg~-~LAtgS-~DGTVhIwdl~ 357 (779)
..+..+...+.+-.|++ .+|++ ||++++ .+.+.+||+..
T Consensus 220 ~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 220 DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33322333345778887 67777 777776 67899999996
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=1.7 Score=50.10 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=43.1
Q ss_pred CEEEEEECCCCcEEEEEeCCCCE----------EEEEE-cCcEEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPI----------YSVRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V----------~sV~~-s~rlLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
..|.-+|++||+.+.++....+. ..+.. .+++++.+.++.|+++|+.|++.+.+...
T Consensus 78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 34888999999999998864321 22333 35556667899999999999999988765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=1.2 Score=51.56 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=22.8
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 337 DDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 337 pDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+..|.+++.||.++.||..++...-.++
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 356778889999999999998865444443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=6.2 Score=44.42 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=115.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC-CcEEEEEecCCcccCCCCCCCccccccce
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
.++++|+|+.+.+.++++.|+..|.-=+| +.+.|+...+..||-|++.. -...+.+.-|++-.+
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~-------------- 150 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-------------- 150 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTT--------------
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhccc--------------
Confidence 57889999999888999988887776666 78888888888899998863 234444444422111
Q ss_pred eecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCCC
Q 004015 141 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 220 (779)
Q Consensus 141 AlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~~ 220 (779)
.+-+.|..++ +.++.+. .|+.
T Consensus 151 ---~QIInY~~d~-------------------------~~kW~~l----------~GI~--------------------- 171 (494)
T 1bpo_A 151 ---CQIINYRTDA-------------------------KQKWLLL----------TGIS--------------------- 171 (494)
T ss_dssp ---CEEEEEEECT-------------------------TSSEEEE----------EEEE---------------------
T ss_pred ---ceEEEEEECC-------------------------CCCeEEE----------Eeec---------------------
Confidence 1122232111 1111110 0110
Q ss_pred cCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC---CCEEEEEeCC--CCEEEE
Q 004015 221 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASVQ--GHNINI 295 (779)
Q Consensus 221 ~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd---G~lLATaS~D--Gt~I~V 295 (779)
. .++.-.|.+.+|....+ .-+.+++|...-..+.+.-+ .++++.|... |..++|
T Consensus 172 ------~--------------~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 172 ------A--------------QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp ------E--------------ETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred ------c--------------cCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 0 00112478899988765 34567788655444444322 2355555553 345899
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecC--CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeec
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRG--LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG--~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
-++...+.+... + . +....+..- ...---..+..|+.-..+..-+.-|-+|+||+++......-+
T Consensus 231 ~Ei~~~~~~~~~-f----~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 231 IEVGTPPTGNQP-F----P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EECSCCCTTCCC-C----C-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCccCCCC-c----c-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 988542111110 0 1 111222110 001113478888888889999999999999999876554444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=94.36 E-value=1.1 Score=45.54 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..+|.|..+|. +++.+..+......+..+.++++|.+.+ ++.+|. |..||. .+ ..++.+.-+
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~g--------------~~~~~~~~~ 293 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-DG--------------TEKWNFETG 293 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-TS--------------CEEEEEECS
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-CC--------------cEEEEEEcC
Confidence 34567777774 5566677766555566678888887655 555655 778874 33 223333222
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
...+.++.+.+++++ .+++.+|.+++.+....
T Consensus 294 --~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 --SWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp --SCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred --CccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 233677888888875 56899999999887653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.3 Score=49.80 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=63.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..++.|..||.. ++.+..+......+.++.++++|.+++.. +. |..|| ..+ ..++....
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g--------------~~~~~~~~ 212 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDG--------------TEKWNFYA 212 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTS--------------CEEEEECC
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCC--------------cEEEEEcc
Confidence 4456889999998 88877777666778889999999977765 44 78888 443 23444432
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+ ...+.++++.+||.. .+++.++.+..|+
T Consensus 213 ~--~~~~~~~~~~~~g~l-~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 213 G--YWTVTRPAISEDGTI-YVTSLDGHLYAIN 241 (330)
T ss_dssp S--SCCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred C--CcceeceEECCCCeE-EEEcCCCeEEEEC
Confidence 2 234778889998865 4566778888775
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=3.4 Score=47.88 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=42.8
Q ss_pred CEEEEEEC-CCCcEEEEEeCCCC------------EEEEEE---cCc----EEEEEeCCeEEEEeCCCCcEEEEEec
Q 004015 64 TVVHFYSL-RSQSYVHMLKFRSP------------IYSVRC---SSR----VVAICQAAQVHCFDAATLEIEYAILT 120 (779)
Q Consensus 64 ~tVrIWDL-~Tge~V~tLkf~s~------------V~sV~~---s~r----lLaVs~d~~I~IwD~~T~e~l~tl~t 120 (779)
+.|.-+|+ +||+.+.+.+.... ...+.+ .++ +++.+.++.|+++|+.|++.+.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 56888999 99999999876432 123444 234 66667789999999999999988754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=5 Score=41.29 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC
Q 004015 271 ISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 340 (779)
Q Consensus 271 IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~ 340 (779)
...|+++++|.++++... .+. |.+||.. + .....+....|.....+..+++ .+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~-G------------~~~~~~~~~~g~~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFDEF-G------------NILEVIPLPPPFAGEHFEQIQE-HDGL 295 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEECTT-S------------CEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEECCC-C------------CEEEEEECCCCCccccceEEEE-eCCE
Confidence 677999999998877654 222 4555532 1 2233344433432233667777 4666
Q ss_pred EEEEEeCCCeEEEEecCC
Q 004015 341 WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 341 ~LAtgS~DGTVhIwdl~~ 358 (779)
.+++....+.|.+|++..
T Consensus 296 L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECSSCSEEEEEEC--
T ss_pred EEEeecCCCceEEEeccc
Confidence 666666788999999864
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=92.77 E-value=10 Score=39.31 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=54.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.++|+........+...-.....|+++|++..|..++... ..|..+++.-. ... .+... .
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-------------~~~--~~~~~-~ 162 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIY--SLVTE-N 162 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEE--EEECS-S
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-------------CeE--EEEEC-C
Confidence 4666777665433333333334668999999665554444432 33666665321 122 11111 1
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
-.....|+|+++++.|..+. ..++|.++++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 12367899999877776554 457899999863
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.48 Score=56.06 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=58.2
Q ss_pred CeEEEEECCCC-cEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCC----CEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 248 GMVIVRDIVSK-NVIA-QFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 248 G~V~VwDl~s~-~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DG----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
..|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.+. . ..-..++..
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~---~-------~~~~lv~~~ 267 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL---Q-------SEDVCLYEE 267 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC---G-------GGCEEEEEC
T ss_pred EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC---c-------hhcEEEEec
Confidence 46999999998 6321 1211 134588999999887776652 23555666442 0 011233332
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCC---CeEEEEecCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~D---GTVhIwdl~~~ 359 (779)
. ......++.|||||++|+..+.+ ..++++++...
T Consensus 268 --~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 268 --H-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp --C-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred --C-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 1 11235689999999999987743 34667777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=90.73 E-value=4.8 Score=40.15 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..+.|.++|+.+......+.........|+|+|++..|..++.....|.++++... ....+ +..+.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------------~~~~~--~~~~~ 121 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------------QRRVL--FDTGL 121 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSSC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC------------CEEEE--EECCC
Confidence 35789999988765443333333467899999986666655555455888887532 11122 11221
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---CCeEEEEecC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAIN 357 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~---DGTVhIwdl~ 357 (779)
.....|+|+|++.+|..+.. .+.|.++++.
T Consensus 122 --~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 122 --VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp --SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred --CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 23679999998776655554 3577777764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=15 Score=36.42 Aligned_cols=73 Identities=10% Similarity=0.026 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-C
Q 004015 269 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-S 347 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~ 347 (779)
.....|+|+|++..|..++...+.|.++|.... . +..+..+. .....|++. +.+|..+. .
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--------------~-~~~~~~~~--~~P~gi~~d--~~~lyva~~~ 227 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--------------G-RRKVLEGL--QYPFAVTSY--GKNLYYTDWK 227 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--------------E-EEEEEECC--CSEEEEEEE--TTEEEEEETT
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--------------c-eEEEecCC--CCceEEEEe--CCEEEEEECC
Confidence 456789999998777666666566889987532 1 11111221 123566654 55555555 5
Q ss_pred CCeEEEEecCCCC
Q 004015 348 RGTSHLFAINPLG 360 (779)
Q Consensus 348 DGTVhIwdl~~~g 360 (779)
.+.|.+++.....
T Consensus 228 ~~~v~~~d~~~g~ 240 (267)
T 1npe_A 228 TNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTTTE
T ss_pred CCeEEEEeCCCCC
Confidence 5789888886543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.38 E-value=22 Score=38.19 Aligned_cols=74 Identities=5% Similarity=-0.044 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEE-e
Q 004015 269 SPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-S 346 (779)
Q Consensus 269 ~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtg-S 346 (779)
.....|+++|++..|.-++... ..|..+++... ..... ...+. ..-..|+|+|+++.|..+ +
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~~~-~~~~~--~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRRII-ADTHL--FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCEEE-ECSSC--SCEEEEEEEGGGTEEEEEET
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-------------CcEEE-EECCC--CCeeeEEEeCCCCEEEEEEC
Confidence 4568899999766555555443 44666665321 11111 11222 235789999877766655 4
Q ss_pred CCCeEEEEecCC
Q 004015 347 SRGTSHLFAINP 358 (779)
Q Consensus 347 ~DGTVhIwdl~~ 358 (779)
..+.|..+++..
T Consensus 266 ~~~~I~~~d~dG 277 (386)
T 3v65_B 266 KHHVIERANLDG 277 (386)
T ss_dssp TTTEEEEECTTS
T ss_pred CCCEEEEEeCCC
Confidence 457788888753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=34 Score=40.02 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCCeEEEEECCCCcEEEEecc--------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRA--------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~a--------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
...|-|..||..++........ ....|.+|+.+++|++|-.|..++- +.+||..++ ...
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~------------~~~ 440 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG------------QVE 440 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC------------CEE
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC------------cEE
Confidence 3445678888877654322211 2357999999999994444555443 788987654 112
Q ss_pred EEEEe-ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 317 HLYRL-QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 317 ~l~~l-~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+ +.. ..+.....|.+|+..++|++.+.+ .+ -+.+|+...
T Consensus 441 ~-~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 441 N-FNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp E-ECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred E-eecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 2 111 001223359999999999855443 44 477777654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=89.54 E-value=2.5 Score=43.52 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=50.1
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 258 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 258 ~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
.+.+..|... .....++|+++|+++++-...++ |..||.... ......+ + .....|+|++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~-------------~~~~~~~--~---~~p~gia~~~ 81 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN-------------QQIHATV--E---GKVSGLAFTS 81 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC-------------EEEEEEC--S---SEEEEEEECT
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc-------------eEEEEeC--C---CCceeEEEcC
Confidence 4566677644 45678999999998777655554 777775421 1222221 2 2478999999
Q ss_pred CCCEEEEEeCCCe--EEEEecC
Q 004015 338 DSNWIMISSSRGT--SHLFAIN 357 (779)
Q Consensus 338 Dg~~LAtgS~DGT--VhIwdl~ 357 (779)
||+++++...... +..|+..
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECT
T ss_pred CCcEEEEeccCCcceEEEEcCC
Confidence 9997666544333 5445543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=89.04 E-value=13 Score=46.38 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=58.9
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+|+|||+...+.+. .. .+-..|..+...-.|.+++.|+.... |.++..... ...+..+-|...
T Consensus 904 ~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~-------------~~~L~~~a~D~~ 968 (1158)
T 3ei3_A 904 STVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPM-------------EGNFEEIARDFN 968 (1158)
T ss_dssp TEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETT-------------TTEEEEEEECCS
T ss_pred CEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC-------------CCeEEEEEeecc
Confidence 478888887665443 21 11112333333345778888887643 555543321 124455556655
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+..+++++|=.++ .++.+-.+|.++|+.+.+
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 5568899986665 567789999999999976
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=87.93 E-value=5.1 Score=44.87 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCeEEEEECCCCcEEEEeccC----CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAH----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aH----t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.+..||.-++.....-+.++.- -..|..|..||+|++||..+.. .|.|-.+..+........ ...... .+.+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~-~~~~~q-~~ty 114 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVS-IQDAFQ-IFHY 114 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHH-HHHTTE-EEEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccc-cccccc-eeEE
Confidence 3467888887744333333321 2367889999999999998876 489999874311110000 000111 2233
Q ss_pred ecCC----CcccEEEEEEcCC---CCEEEEEeCCCeEEEEecCC
Q 004015 322 QRGL----TNAVIQDISFSDD---SNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 322 ~rG~----t~a~I~sIaFSpD---g~~LAtgS~DGTVhIwdl~~ 358 (779)
+-|. ....|..+-|.|- +..|++=..|++|++||+..
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 3232 1356999999994 45799999999999999986
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=87.75 E-value=30 Score=37.96 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=56.9
Q ss_pred CCCeEEEEECCCCcEEEEe-ccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe--
Q 004015 246 NVGMVIVRDIVSKNVIAQF-RAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-- 321 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f-~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l-- 321 (779)
..+.|..+|..++.....+ ... ...-..|+|+|+|.+|..++...+.|..++.... .+... ....+.-.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-~~~~~------~~~~~ag~~g 320 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-TGKLA------VPYIVCGQHS 320 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-TCCBC------CCEEEEECTT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-CcccC------cEEEEEecCC
Confidence 3467888888766552222 211 1223469999999977767776677888776531 00000 00000000
Q ss_pred ecCC--------CcccEEEEEE---------cCCCCEEEEEeCCCeEEEEe
Q 004015 322 QRGL--------TNAVIQDISF---------SDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 322 ~rG~--------t~a~I~sIaF---------SpDg~~LAtgS~DGTVhIwd 355 (779)
..|. .-..-..|+| .+++.+.++-+..+.|++++
T Consensus 321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0010 0112568999 77787777766677888876
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.79 E-value=34 Score=36.04 Aligned_cols=95 Identities=5% Similarity=-0.044 Sum_probs=52.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.+.|+........+...-.....|+++|++..|.-++... ..|..+++... ..... +..+.
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~~~-~~~~~- 202 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRRII-ADTHL- 202 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCEES-CCSSC-
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-------------CcEEE-EECCC-
Confidence 4566666654433222333334568899999655554444433 34666665421 11110 11121
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
..-..|+|+|+++.|..+. ..++|..+++..
T Consensus 203 -~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 -FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2357899999777666554 457888888753
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=86.07 E-value=36 Score=35.58 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=53.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.++|+........+......-..|+++|.+.+|.-++. ....|..+++.-. ....+ +..+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~l- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS------------SRFII--INSEI- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC-
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC------------CeEEE--EECCC-
Confidence 46667776654322223233345688999997555554443 2233555554321 11111 11222
Q ss_pred cccEEEEEEcCCCCEEEEE-eCCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~ 358 (779)
..-..|+|+|+++.|..+ +..+.|..+++..
T Consensus 166 -~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 166 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 225789999987776655 4567888888853
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=59 Score=37.95 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCeEEEEECCCCcEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 004015 246 NVGMVIVRDIVSKNVIAQFRA-------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 318 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~a-------Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l 318 (779)
..+-|.+||..+... ..+.. ....|.+|..+++|.+.+. +.+|- |..|+..+. ...+
T Consensus 328 ~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~~~G-l~~~~~~~~------------~~~~- 391 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TNDGG-LNLYNPITQ------------RFTS- 391 (795)
T ss_dssp SSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ESSSC-EEEECTTTC------------CEEE-
T ss_pred CCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-ECCCC-eEEEcCCCC------------cEEE-
Confidence 344566676654432 22221 2356999999999998774 44433 788887653 1222
Q ss_pred EEeec-----CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 319 YRLQR-----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 319 ~~l~r-----G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
+.... +.....|.+++..++++.|-+|+.++-+.+|+...
T Consensus 392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 21111 22234599999999998556677777788888765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.19 E-value=43 Score=35.76 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=55.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|..+|+........+...-..-+.|+|+|++..|..++.....|..+|+... ..+.+. ..+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~--~~~~-- 288 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAVI--SQGL-- 288 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------------SCEEEE--CSSC--
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------------eeEEEE--ECCC--
Confidence 455666655433222222223346789999987777777776666788876421 112221 1221
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.....|++ .++..+.+-...+.|..++..++.....+
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 23567888 34444455556677777775444333333
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=8.9 Score=39.38 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
..|.|..||..+++....... ......|+|+|+|++|..+......|.+|++.....+ ....+..+ .
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---------~~~~~~~~-~-- 229 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---------TAEVLVKI-P-- 229 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---------CEEEEEEC-S--
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---------ccceEEeC-C--
Confidence 457888899877654322221 1234569999999966666544345888987642100 11222221 1
Q ss_pred CcccEEEEEEcCCCCEEEEEeC
Q 004015 326 TNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
. ...|++.++|++.++...
T Consensus 230 --g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 230 --N-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp --S-EEEEEECTTSCEEEEEEE
T ss_pred --C-CCCeEECCCCCEEEEecC
Confidence 2 567999999987666544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=84.62 E-value=48 Score=35.74 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=55.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.+.|+........+...-.....|+++|.+.+|.-++. +...|..+++.-. ..... +..+.
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-------------~~~~~-~~~~l- 245 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYSL-VTENI- 245 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-------------SCEEE-ECSSC-
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-------------ccEEE-EECCC-
Confidence 46677777655444334433445789999996555544443 2123666665421 11111 11221
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~ 358 (779)
.....|+|+++++.|..+- ..++|..+++.-
T Consensus 246 -~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 246 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 2367899999888777664 457888888854
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.30 E-value=9.6 Score=48.66 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=42.0
Q ss_pred CCCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC
Q 004015 62 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 111 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T 111 (779)
..++++|+|+.+.+.++++.|+.+|.-=+| +.+.|+...+..|+-|++..
T Consensus 84 ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 357899999999999999999888776666 78889888889999999863
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=84.12 E-value=2 Score=50.74 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=48.0
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEeC-CC---CEEEEEeCCCC-CCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCC
Q 004015 266 AHKS-PISALCFD-PSGILLVTASV-QG---HNINIFKIIPG-ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 338 (779)
Q Consensus 266 aHt~-~IsaLaFS-PdG~lLATaS~-DG---t~I~Vwdi~~~-~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpD 338 (779)
+|.. .+...+|| |||++||-+.. .| ..|.|+|+.++ ..- ... +.. ...+++||||
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----------~~~---~~~-----~~~~~~WspD 231 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----------ADK---VSG-----TNGEIVWGPD 231 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------CCC---EEE-----ECSCCEECSS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------Ccc---ccC-----ceeeEEEecC
Confidence 3443 68899999 99999885544 33 24888998753 100 001 111 1236899999
Q ss_pred CCEEEEEeCCC-----eEEEEecCC
Q 004015 339 SNWIMISSSRG-----TSHLFAINP 358 (779)
Q Consensus 339 g~~LAtgS~DG-----TVhIwdl~~ 358 (779)
|+.|+....|. .|+++++..
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCC
Confidence 99999888763 466666644
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=83.54 E-value=12 Score=40.35 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=59.7
Q ss_pred CCeEEEEECCCC----cEEEEeccCC-CCeEEEEEcCCCCEEEEEeC---C------------CCEEEEEeCCCCCCCCC
Q 004015 247 VGMVIVRDIVSK----NVIAQFRAHK-SPISALCFDPSGILLVTASV---Q------------GHNINIFKIIPGILGTS 306 (779)
Q Consensus 247 dG~V~VwDl~s~----~~v~~f~aHt-~~IsaLaFSPdG~lLATaS~---D------------Gt~I~Vwdi~~~~~g~~ 306 (779)
...|.||++... ..+.++.+.. ...+.++++++|.+++|.+. | .. =+||.+.++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 356777766542 2344554432 46889999999999998652 1 11 244444332
Q ss_pred CccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCC
Q 004015 307 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 361 (779)
Q Consensus 307 s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg 361 (779)
.++. +..+.. .-..|+||||+++|..+. ..++|++|++...+.
T Consensus 212 -------~~~~---~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 -------DVRV---VAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp -------CCEE---EEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -------eEEE---eecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 1121 112221 246899999998877664 578999999986443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.94 E-value=86 Score=37.42 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.|.+.|+........+.........|+++|.+.+|.-++. ....|.+.++.-. .... .+..+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------~~~~-lv~~~l 557 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DIYS-LVTENI 557 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CEEE-EECSSC
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-------------ceEE-EEeCCC
Confidence 357778888765443333344456789999997554544443 2134666665421 1211 111221
Q ss_pred CcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~ 359 (779)
.....|++++++.+|..+- ..++|.++++.-.
T Consensus 558 --~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 558 --QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --CCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 2367999998877776664 3467888887543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=81.94 E-value=5.9 Score=42.75 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCeEEEEECC---CCcEEEEec--cCC-----------CCeEEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCc
Q 004015 246 NVGMVIVRDIV---SKNVIAQFR--AHK-----------SPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSA 308 (779)
Q Consensus 246 ~dG~V~VwDl~---s~~~v~~f~--aHt-----------~~IsaLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~ 308 (779)
.+..|..||+. +++.+..+. +.. .....|+.+++|...+|.+.- +. ||.+.+. |.
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd--G~--- 169 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD--GK--- 169 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT--SC---
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC--CC---
Confidence 45678899999 776654433 222 248899999999999998876 54 5665543 11
Q ss_pred cCCCCceeEEEEeec--CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 309 CDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 309 ~~~~~s~~~l~~l~r--G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
. ...+-+.. ..+..-...|+|.|||+.|++....|.+..||+.
T Consensus 170 -----~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 -----T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -----C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -----E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 11122222 1111125689999999999988779999999997
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=81.46 E-value=5.9 Score=43.12 Aligned_cols=101 Identities=11% Similarity=0.218 Sum_probs=64.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCC----CCE--EEEEeCC---CCEEEEEeCCCCCCCCCCccCCC
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS----GIL--LVTASVQ---GHNINIFKIIPGILGTSSACDAG 312 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPd----G~l--LATaS~D---Gt~I~Vwdi~~~~~g~~s~~~~~ 312 (779)
+.+...+-+.|||+ +++.++.+.. +.++.+..-|+ |+. ||.++.. .+.|.||++.+. .
T Consensus 44 i~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~--------- 110 (355)
T 3amr_A 44 ITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-N--------- 110 (355)
T ss_dssp EEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-T---------
T ss_pred EEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-C---------
Confidence 44455678999999 7888888864 56677666553 332 4444443 356999988643 0
Q ss_pred CceeEEEEeec-----CCCcccEEEEEE--cCC-CC-EEEEEeCCCeEEEEecCC
Q 004015 313 TSYVHLYRLQR-----GLTNAVIQDISF--SDD-SN-WIMISSSRGTSHLFAINP 358 (779)
Q Consensus 313 ~s~~~l~~l~r-----G~t~a~I~sIaF--SpD-g~-~LAtgS~DGTVhIwdl~~ 358 (779)
..+..+-+ +.....++.+|+ +|+ ++ |+.+...+|.+..|++..
T Consensus 111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 11222211 011134678898 885 44 788888999999999965
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 779 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.003 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 15/106 (14%)
Query: 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA 308
+ D+ F H+S I+A+CF P+G T S
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--------- 257
Query: 309 CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354
L I +SFS ++ +++
Sbjct: 258 ------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 287
V D + + H + +S L G+ + T S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 9/84 (10%)
Query: 214 SEFLPDSQNSLQSAIPGGKSNGTVNGHF-PDADNV-----GMVIVRDIVSKNVIAQFRAH 267
SEF SQ +L ++P V P D + V + S + H
Sbjct: 1 SEF---SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEH 57
Query: 268 KSPISALCFDPSGILLVTASVQGH 291
+ PSG + V G+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGN 81
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 297
+ V D +K + AH+ +++L F + +VT SV + +++
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 9e-04
Identities = 15/147 (10%), Positives = 44/147 (29%), Gaps = 19/147 (12%)
Query: 210 SQYCSEFLPDSQNSLQSAIPGGKS--NGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 267
C + P+S S S G ++ +G + + D+ + + H
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 268 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327
+ + + F G +++ + + ++ + +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNK---------------RCMKTLNAHEH 290
Query: 328 AVIQDISFSDDSNWIMISSSRGTSHLF 354
V + F + +++ S T ++
Sbjct: 291 FVT-SLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 4/123 (3%)
Query: 234 NGTVNGHFPDADNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPSGILLVTASVQ 289
+ I+ + I + H S + + F G L T +
Sbjct: 24 DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83
Query: 290 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349
+ + S A +L ++ I+ + FS D ++ +
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143
Query: 350 TSH 352
Sbjct: 144 LIR 146
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (88), Expect = 0.003
Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 264 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323
HK + ++ F G +V+ S+ + + ++ D+ T +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSV-----KLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354
+ ++ + + +I+ S +
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 0.003
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 262 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321
A PIS ++ + H ++I++ +G +V ++ L
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICP-NNHEVHIYEK------------SGNKWVQVHEL 47
Query: 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 354
+ V + ++ DSN I+ + ++++
Sbjct: 48 K-EHNGQV-TGVDWAPDSNRIVTCGTDRNAYVW 78
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 779 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.85 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.84 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.8 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.78 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.77 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.75 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.75 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.75 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.74 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.73 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.73 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.72 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.7 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.67 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.67 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.66 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.65 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.65 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.64 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.64 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.61 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.59 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.58 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.57 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.56 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.53 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.5 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.48 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.47 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.46 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.45 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.37 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.36 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.26 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.23 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.18 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.15 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.99 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.93 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.74 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.35 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.18 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.16 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.73 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.6 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.06 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.38 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.38 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.17 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.12 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.45 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 95.18 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.02 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.92 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.61 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.42 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.19 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.16 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 92.18 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 91.72 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 90.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 89.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 85.83 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 85.77 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 83.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 83.24 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=3.1e-20 Score=183.80 Aligned_cols=98 Identities=8% Similarity=0.230 Sum_probs=85.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+..+|.|++||+.+++++.++.+|..+|.+++|+|+|++||+|+.||+ |+|||+..+ ..+..
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~ 284 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNK--------------RCMKT 284 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTS--------------CCCEE
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCC--------------cEEEE
Confidence 455678899999999999999999999999999999999999999999997 999999865 22334
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+. ++ ...|.+++|+||+++||+|+.||+|+|||
T Consensus 285 ~~-~h-~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 285 LN-AH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EE-CC-SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred Ec-CC-CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 42 33 24599999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=5.5e-19 Score=178.32 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=99.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+..+|.|++||+.+++++..|.+|..+|++|+|+|+|++||+|+.||+ |++||+... ..+..
T Consensus 199 ~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~--------------~~~~~ 263 (340)
T d1tbga_ 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD--------------QELMT 263 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEE
T ss_pred eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeeccc--------------ccccc
Confidence 456678899999999999999999999999999999999999999999998 899999864 33333
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCC
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 371 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~ 371 (779)
+........|.+++|+|++++|++|+.||+|+|||+........+.+|...
T Consensus 264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~ 314 (340)
T d1tbga_ 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314 (340)
T ss_dssp ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC
Confidence 333333445999999999999999999999999999988777788888543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.84 E-value=6.7e-19 Score=183.26 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=150.7
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEE--EEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE--YAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l--~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
+.|.+||+.+++.++.+.. ...|.+|+|+ +++||+ +.|++|++||+.+.+.. .++..|..+ .
T Consensus 38 ~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------v 105 (311)
T d1nr0a1 38 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP------------V 105 (311)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC------------E
T ss_pred CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCc------------c
Confidence 5699999999999998864 7899999995 677776 67899999999988754 445544221 1
Q ss_pred cceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccc
Q 004015 138 GPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 215 (779)
Q Consensus 138 ~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~ 215 (779)
..+++++ ++|+..+.. ....+..+-.+..+.+. .+..
T Consensus 106 ~~v~~s~d~~~l~~~~~~-------------------------~~~~~~v~~~~~~~~~~------------~l~~---- 144 (311)
T d1nr0a1 106 KDISWDSESKRIAAVGEG-------------------------RERFGHVFLFDTGTSNG------------NLTG---- 144 (311)
T ss_dssp EEEEECTTSCEEEEEECC-------------------------SSCSEEEEETTTCCBCB------------CCCC----
T ss_pred cccccccccccccccccc-------------------------ccccccccccccccccc------------cccc----
Confidence 2344433 344433210 00001111111111000 0000
Q ss_pred ccCCCcCccccc--cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 216 FLPDSQNSLQSA--IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 216 l~p~~~~si~sa--~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
....+... .+. + ...++++..+|.|+|||+++++.+..+..|..+|.+++|+|+|++|++++.||. |
T Consensus 145 ----h~~~v~~v~~~~~----~--~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v 213 (311)
T d1nr0a1 145 ----QARAMNSVDFKPS----R--PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-I 213 (311)
T ss_dssp ----CSSCEEEEEECSS----S--SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred ----ccccccccccccc----c--eeeecccccccccccccccccccccccccccccccccccCcccccccccccccc-c
Confidence 00000000 010 0 012456678999999999999999999999999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCccCCCCceeEEEEeec------CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 294 NIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r------G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
+|||+..+ ..+..+.. |+ ...|.+++|+||+++|++|+.||+|+|||+.+......+..
T Consensus 214 ~~~d~~~~--------------~~~~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~ 278 (311)
T d1nr0a1 214 VLYNGVDG--------------TKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278 (311)
T ss_dssp EEEETTTC--------------CEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cccccccc--------------cccccccccccccccc-cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence 99999865 22233322 22 34599999999999999999999999999988765556655
Q ss_pred C
Q 004015 368 T 368 (779)
Q Consensus 368 H 368 (779)
|
T Consensus 279 ~ 279 (311)
T d1nr0a1 279 G 279 (311)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=7.9e-18 Score=174.98 Aligned_cols=240 Identities=14% Similarity=0.143 Sum_probs=147.8
Q ss_pred CEEEEEECCCCcEEEEEeC-------------------CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecC
Q 004015 64 TVVHFYSLRSQSYVHMLKF-------------------RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 121 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-------------------~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~ 121 (779)
++|+|||+.+++.+.++.. ...|.+|+|+ +++|++ +.++.|++||..+++.+..+..|
T Consensus 83 ~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h 162 (388)
T d1erja_ 83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162 (388)
T ss_dssp SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccc
Confidence 6799999999999988752 3459999996 556665 67899999999999999888766
Q ss_pred CcccCCCCCCCccccccceeecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceee
Q 004015 122 PIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 199 (779)
Q Consensus 122 p~~~~~p~s~~~~~~~~piAlgp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~ 199 (779)
.... ..++..+ ..++.++.. ..+..+-......+. .
T Consensus 163 ~~~v------------~~~~~~~~~~~~~~~~~~---------------------------~~i~~~d~~~~~~~~--~- 200 (388)
T d1erja_ 163 EQDI------------YSLDYFPSGDKLVSGSGD---------------------------RTVRIWDLRTGQCSL--T- 200 (388)
T ss_dssp SSCE------------EEEEECTTSSEEEEEETT---------------------------SEEEEEETTTTEEEE--E-
T ss_pred cccc------------cccccccccccccccccc---------------------------eeeeeeecccccccc--c-
Confidence 4321 1122222 222222111 011111000000000 0
Q ss_pred ecCCccccccccccccccCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEe-------ccCCCCeE
Q 004015 200 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-------RAHKSPIS 272 (779)
Q Consensus 200 ~lGd~~~~~ls~y~~~l~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f-------~aHt~~Is 272 (779)
....... ... ...+. . ...++.+..+|.|++||+.++..+..+ .+|..+|.
T Consensus 201 ~~~~~~~---------------~~~-~~~~~---~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~ 258 (388)
T d1erja_ 201 LSIEDGV---------------TTV-AVSPG---D---GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258 (388)
T ss_dssp EECSSCE---------------EEE-EECST---T---CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred ccccccc---------------ccc-cccCC---C---CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE
Confidence 0000000 000 00000 0 113456678899999999998776655 36899999
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 273 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 273 aLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
+|+|+|+|++|++++.||+ |+|||+............ ......... .. +...|.+++|+||+++|++|+.||+|+
T Consensus 259 ~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~ 333 (388)
T d1erja_ 259 SVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTP--NSGTCEVTY-IG-HKDFVLSVATTQNDEYILSGSKDRGVL 333 (388)
T ss_dssp EEEECTTSSEEEEEETTSE-EEEEEC-----------------CEEEEE-EC-CSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred EEEECCCCCEEEEEECCCc-EEEEeccCCccccccccc--cccceeeec-cc-ccceEEEEEECCCCCEEEEEeCCCEEE
Confidence 9999999999999999997 899999764110000000 001111121 12 233599999999999999999999999
Q ss_pred EEecCCCCCceeeccCCCCC
Q 004015 353 LFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 353 Iwdl~~~gg~~~~~~H~~~~ 372 (779)
|||+.+......+++|.+.+
T Consensus 334 vwd~~~~~~~~~l~~H~~~V 353 (388)
T d1erja_ 334 FWDKKSGNPLLMLQGHRNSV 353 (388)
T ss_dssp EEETTTCCEEEEEECCSSCE
T ss_pred EEECCCCcEEEEEeCCCCCE
Confidence 99999887777888886443
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=5e-17 Score=172.82 Aligned_cols=119 Identities=15% Similarity=0.234 Sum_probs=98.2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCCC--EEEEEeCCCCCCCCCCccCC
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQF------RAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f------~aHt~~IsaLaFSPdG~lLATaS~DGt--~I~Vwdi~~~~~g~~s~~~~ 311 (779)
.++++..||.|+|||+.+++++..+ .+|..+|.+|+|+|||++||+|+.|++ .|+|||+..+
T Consensus 197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g---------- 266 (393)
T d1sq9a_ 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---------- 266 (393)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------
T ss_pred EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc----------
Confidence 4577889999999999999887655 468999999999999999999999975 4899999875
Q ss_pred CCceeEEEEee------------cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCCCCCC
Q 004015 312 GTSYVHLYRLQ------------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 373 (779)
Q Consensus 312 ~~s~~~l~~l~------------rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~~~~~ 373 (779)
..+..+. .|+. ..|++|+||||+++||+++.|++|+|||+.++....++++|.+.+.
T Consensus 267 ----~~~~~l~~~~~~~~~~~~~~gH~-~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 267 ----ERIGSLSVPTHSSQASLGEFAHS-SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp ----CEEEEECBC--------CCBSBS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred ----eeeeeeccccccccceeeeeccc-CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 2222321 3443 4599999999999999999999999999999888888999965443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.4e-17 Score=169.00 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=129.5
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
..|++||+.++++...... ...|.+|+|+ +..+++ +.++.|++||+.+++.+..+... . +
T Consensus 163 ~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~-~---------------~ 226 (337)
T d1gxra_ 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-S---------------Q 226 (337)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-S---------------C
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccc-c---------------c
Confidence 6799999999998887764 7889999995 445554 67899999999999987776421 0 0
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+ ..|++.. ++.
T Consensus 227 i----~~l~~~~---------------------------~~~-------------------------------------- 237 (337)
T d1gxra_ 227 I----FSLGYCP---------------------------TGE-------------------------------------- 237 (337)
T ss_dssp E----EEEEECT---------------------------TSS--------------------------------------
T ss_pred e----EEEEEcc---------------------------ccc--------------------------------------
Confidence 1 0122220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
.++.+..+|.|++||+.+.... ....|..+|++|+|+|+|++|+|++.||. |+|||+.
T Consensus 238 --------------------~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~ 295 (337)
T d1gxra_ 238 --------------------WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTP 295 (337)
T ss_dssp --------------------EEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETT
T ss_pred --------------------ccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCe-EEEEECC
Confidence 1122345789999999988764 56789999999999999999999999987 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
.+ ..+..+. + ...|.+++||||+++||+|+.||+|+||||
T Consensus 296 ~~--------------~~~~~~~--~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 296 YG--------------ASIFQSK--E-SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TC--------------CEEEEEE--C-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CC--------------CEEEEcc--C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 75 3334432 2 245999999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.75 E-value=6.9e-17 Score=162.71 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=86.9
Q ss_pred ccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
++.+..+|.|++||+.+++... ....|..+|++|+|+|+|++|++++.||+ |++||+.... ....+.
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~-----------~~~~~~ 218 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNF-----------ELAHTN 218 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTT-----------EESCCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-----------cccccc
Confidence 4566789999999999887654 34589999999999999999999999998 8999987641 001111
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
.+ .+ +...|.+++|+||+++||+|+.||+|+||++........+
T Consensus 219 ~~-~~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 262 (299)
T d1nr0a2 219 SW-TF-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262 (299)
T ss_dssp CC-CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred cc-cc-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence 11 22 2346999999999999999999999999999886554433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.2e-16 Score=168.58 Aligned_cols=201 Identities=14% Similarity=0.147 Sum_probs=135.1
Q ss_pred CEEEEEECCCCc--EEEEEe-CCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccc
Q 004015 64 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 137 (779)
Q Consensus 64 ~tVrIWDL~Tge--~V~tLk-f~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~ 137 (779)
+.|+|||+.+++ +++.|+ +..+|.+|+|+ +++|++ +.|++|++||+.+.+....+..... .
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-------------~ 95 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI-------------N 95 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC-------------S
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccc-------------c
Confidence 569999998886 556665 47899999996 566665 6789999999988775555432100 0
Q ss_pred cceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 138 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 138 ~piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
.++ ..++|.. ++.
T Consensus 96 ~~v----~~i~~~p---------------------------~~~------------------------------------ 108 (371)
T d1k8kc_ 96 RAA----RCVRWAP---------------------------NEK------------------------------------ 108 (371)
T ss_dssp SCE----EEEEECT---------------------------TSS------------------------------------
T ss_pred ccc----ccccccc---------------------------ccc------------------------------------
Confidence 001 0112210 111
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 293 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~----~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I 293 (779)
.++.+..+|+|++|++.... .......|...|.+++|+|+|++||+|+.||+ |
T Consensus 109 ----------------------~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~-v 165 (371)
T d1k8kc_ 109 ----------------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-C 165 (371)
T ss_dssp ----------------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred ----------------------cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE-E
Confidence 12233456889999887654 23445689999999999999999999999998 8
Q ss_pred EEEeCCCCCCCCCCc----cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 294 NIFKIIPGILGTSSA----CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 294 ~Vwdi~~~~~g~~s~----~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
+||++.......... .........++... + +...|.+++|+||+++||+++.|++|+|||+........+..|.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 243 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEeeccCccccccccccccccccceeeeeecc-C-ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence 999987541110000 00001112333332 2 23459999999999999999999999999998876666677764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.5e-16 Score=164.83 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=85.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
++.+..+|.|++||+++++.+..+ .|..+|.+|+|+|+|++|++++.||. |++||+... . .+.
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~-~~~ 260 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKP--------------D-KYQ 260 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSS--------------C-EEE
T ss_pred cccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccc-ccccccccc--------------c-ccc
Confidence 445667899999999999888776 48899999999999999999999998 899999864 1 122
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCc
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 362 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~ 362 (779)
. .+ +...|.+++|+||+++|++++.||+|+||++......
T Consensus 261 ~-~~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 261 L-HL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp E-CC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred c-cc-cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 2 22 2345999999999999999999999999999876443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.6e-16 Score=156.60 Aligned_cols=129 Identities=10% Similarity=0.178 Sum_probs=98.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCC-----CCC---------
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTS--------- 306 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~-----g~~--------- 306 (779)
++.+..++.+++||+.+++.+..+.+|...+.+++|+|+|++|++++.||+ |++|++..... +..
T Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~i~~~~~~ 194 (317)
T d1vyhc1 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT-VRVWVVATKECKAELREHRHVVECISWA 194 (317)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe-EEEEeeccceeeEEEecCCCCceEEEEe
Confidence 455678899999999999999999999999999999999999999999998 89999876411 000
Q ss_pred --Cc------------------------cCCC--------CceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEE
Q 004015 307 --SA------------------------CDAG--------TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 352 (779)
Q Consensus 307 --s~------------------------~~~~--------~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVh 352 (779)
.. +... .+...+.++ .++ ...|.+++|+|++++|++++.||+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~ 272 (317)
T d1vyhc1 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLR 272 (317)
T ss_dssp CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-eCC-CCCEEEEEECCCCCEEEEEECCCeEE
Confidence 00 0000 011122222 222 34589999999999999999999999
Q ss_pred EEecCCCCCceeeccCCCCC
Q 004015 353 LFAINPLGGSVNFQPTDANF 372 (779)
Q Consensus 353 Iwdl~~~gg~~~~~~H~~~~ 372 (779)
|||+........+.+|...+
T Consensus 273 iwd~~~~~~~~~~~~h~~~V 292 (317)
T d1vyhc1 273 VWDYKNKRCMKTLNAHEHFV 292 (317)
T ss_dssp EECCTTSCCCEEEECCSSCE
T ss_pred EEECCCCcEEEEEcCCCCCE
Confidence 99999887778888886443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=2.8e-16 Score=163.08 Aligned_cols=215 Identities=14% Similarity=0.175 Sum_probs=137.2
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|++||..+++.+..+.. ...|..+.++ +..+ ..+.++.|++||..+.........+.... .
T Consensus 143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------------~ 209 (388)
T d1erja_ 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-------------T 209 (388)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-------------E
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccc-------------c
Confidence 6799999999999998874 7889999996 3444 45778999999999998887775542110 1
Q ss_pred eeec---CceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccc
Q 004015 140 LAVG---PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 214 (779)
Q Consensus 140 iAlg---pRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~ 214 (779)
+++. +++|+.++.+ +.+++.. .+..+....... ....+..
T Consensus 210 ~~~~~~~~~~l~~~~~d~~i~i~~~~------------------~~~~~~~~~~~~-------~~~~~h~---------- 254 (388)
T d1erja_ 210 VAVSPGDGKYIAAGSLDRAVRVWDSE------------------TGFLVERLDSEN-------ESGTGHK---------- 254 (388)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETT------------------TCCEEEEEC-------------CCCS----------
T ss_pred ccccCCCCCeEEEEcCCCeEEEeecc------------------cCccceeecccc-------ccccCCC----------
Confidence 1111 2455544321 1111100 000000000000 0000000
Q ss_pred cccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCC------------cEEEEeccCCCCeEEEEEcCCC
Q 004015 215 EFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------------NVIAQFRAHKSPISALCFDPSG 280 (779)
Q Consensus 215 ~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~------------~~v~~f~aHt~~IsaLaFSPdG 280 (779)
..+.. . ++. ...++.+..+|.|++||+.+. .....+..|...|.+++|+|+|
T Consensus 255 -------~~v~~l~~s~~-------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 255 -------DSVYSVVFTRD-------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp -------SCEEEEEECTT-------SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred -------CCEEEEEECCC-------CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC
Confidence 00000 0 011 114566778999999999754 3455667899999999999999
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEE------EcCCCCEEEEEeCCCeEEEE
Q 004015 281 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS------FSDDSNWIMISSSRGTSHLF 354 (779)
Q Consensus 281 ~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIa------FSpDg~~LAtgS~DGTVhIw 354 (779)
++|++|+.||+ |+|||+.++ ..+.++ +|+. ..|.+++ |+||+++||+|+.||+|+||
T Consensus 321 ~~l~sg~~dg~-i~vwd~~~~--------------~~~~~l-~~H~-~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 321 EYILSGSKDRG-VLFWDKKSG--------------NPLLML-QGHR-NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383 (388)
T ss_dssp CEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred CEEEEEeCCCE-EEEEECCCC--------------cEEEEE-eCCC-CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence 99999999997 899999875 445555 3433 3588886 57899999999999999999
Q ss_pred ecC
Q 004015 355 AIN 357 (779)
Q Consensus 355 dl~ 357 (779)
+++
T Consensus 384 ~~~ 386 (388)
T d1erja_ 384 KYK 386 (388)
T ss_dssp EEE
T ss_pred eee
Confidence 985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.73 E-value=9.5e-17 Score=166.77 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=127.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--Cc-EEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~r-lLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
..++||++.+++.+++++. ...|.+|+|+ ++ +|++ +.++.|++||+.++++...+..|..+. .
T Consensus 126 ~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i------------~ 193 (311)
T d1nr0a1 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV------------H 193 (311)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE------------E
T ss_pred ccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccc------------c
Confidence 5689999999999998876 5789999996 33 3544 578999999999999888886653210 1
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+ ++. | ++.
T Consensus 194 ~v-------~~~-------------p--------------~~~------------------------------------- 202 (311)
T d1nr0a1 194 SV-------RYN-------------P--------------DGS------------------------------------- 202 (311)
T ss_dssp EE-------EEC-------------T--------------TSS-------------------------------------
T ss_pred cc-------ccC-------------c--------------ccc-------------------------------------
Confidence 11 111 0 111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-------AHKSPISALCFDPSGILLVTASVQGH 291 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~-------aHt~~IsaLaFSPdG~lLATaS~DGt 291 (779)
.++.+..+|.|++||+.++..+..|+ +|.++|++|+|+|+|++||||+.||+
T Consensus 203 ---------------------~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 203 ---------------------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ---------------------ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe
Confidence 12234567899999999988887764 68999999999999999999999997
Q ss_pred EEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC-cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 292 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 292 ~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t-~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|+|||+.++ ..+.++..+.. ...+.++.| ++++|++++.||.|++||.+
T Consensus 262 -v~iwd~~t~--------------~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 262 -IKIWNVATL--------------KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp -EEEEETTTT--------------EEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred -EEEEECCCC--------------cEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 999999875 44555543322 122444555 56689999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=6.2e-16 Score=155.60 Aligned_cols=171 Identities=12% Similarity=0.158 Sum_probs=127.2
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
.....|+..+......... ...+..+.+. ..+++ ...++.|++||+.+++++.++..|... +..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~------------i~~ 231 (340)
T d1tbga_ 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------------INA 231 (340)
T ss_dssp TEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC------------EEE
T ss_pred ccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC------------eEE
Confidence 4566777777666655554 5667777774 44554 467899999999999999988765321 111
Q ss_pred eeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 140 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 140 iAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
+++.. ++.
T Consensus 232 -------v~~~p---------------------------~~~-------------------------------------- 239 (340)
T d1tbga_ 232 -------ICFFP---------------------------NGN-------------------------------------- 239 (340)
T ss_dssp -------EEECT---------------------------TSS--------------------------------------
T ss_pred -------EEECC---------------------------CCC--------------------------------------
Confidence 22220 111
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEe
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwd 297 (779)
.++.+..+|.|++||+.....+..+. .|..+|.+++|+|+|++|++|+.||+ |+|||
T Consensus 240 --------------------~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd 298 (340)
T d1tbga_ 240 --------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWD 298 (340)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEE
T ss_pred --------------------EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEE
Confidence 12234567899999999998877764 67788999999999999999999998 89999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
+..+ ..+..+ +++. ..|.+|+|+||+++||+|+.||+|+|||
T Consensus 299 ~~~~--------------~~~~~~-~~H~-~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 299 ALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCC--------------cEEEEE-cCCC-CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9865 345555 3443 4699999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.1e-16 Score=154.60 Aligned_cols=212 Identities=16% Similarity=0.203 Sum_probs=138.8
Q ss_pred CCCEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CcEEEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 62 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 62 ~~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s-~rlLaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
...+|.+|+..+++....+.. .......... ..++..+.++.|++||+...+++.++..+.....+
T Consensus 115 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~------------ 182 (342)
T d2ovrb2 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS------------ 182 (342)
T ss_dssp TTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE------------
T ss_pred cceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc------------
Confidence 557788999999888888765 5555566665 55566688899999999888888888777553333
Q ss_pred eeecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCcccccccccccccc
Q 004015 140 LAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 217 (779)
Q Consensus 140 iAlgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~ 217 (779)
++..+.+|+.++.+ +.+|+.. .+..+.. ..++.. ....+.
T Consensus 183 ~~~~~~~l~s~~~dg~i~~~d~~------------------~~~~~~~--------------~~~~~~------~v~~~~ 224 (342)
T d2ovrb2 183 LQFDGIHVVSGSLDTSIRVWDVE------------------TGNCIHT--------------LTGHQS------LTSGME 224 (342)
T ss_dssp EEECSSEEEEEETTSCEEEEETT------------------TCCEEEE--------------ECCCCS------CEEEEE
T ss_pred ccCCCCEEEEEeCCCeEEEeecc------------------cceeeeE--------------eccccc------ceeEEe
Confidence 12234455555432 2223210 0000000 000000 000000
Q ss_pred CCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEEcCCCCEEEEEeCCCCEEE
Q 004015 218 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPISALCFDPSGILLVTASVQGHNIN 294 (779)
Q Consensus 218 p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~a---Ht~~IsaLaFSPdG~lLATaS~DGt~I~ 294 (779)
++ ...++.+..+|.|+|||+...+....+.+ |...+.++.|+ +.+|++|+.||+ |+
T Consensus 225 ~~------------------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~-i~ 283 (342)
T d2ovrb2 225 LK------------------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VK 283 (342)
T ss_dssp EE------------------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EE
T ss_pred cC------------------CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCE-EE
Confidence 00 01345667889999999999988888775 55677777665 579999999997 99
Q ss_pred EEeCCCCCCCCCCccCCCCceeEEEEeec---CCCcccEEEEEEcCCCCEEEEEeCCCe----EEEEecCC
Q 004015 295 IFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGT----SHLFAINP 358 (779)
Q Consensus 295 Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r---G~t~a~I~sIaFSpDg~~LAtgS~DGT----VhIwdl~~ 358 (779)
|||+.++ ..++++.. +.+...|++++|+||+.+||+|+.||| ++|||++.
T Consensus 284 iwd~~tg--------------~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 284 LWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCC--------------CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999876 34444432 223445999999999999999999997 99999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.1e-15 Score=147.79 Aligned_cols=251 Identities=18% Similarity=0.206 Sum_probs=140.3
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|+|||+.+++++++++. ...|.++++++.+|++ +.|+.+++|+................. ....
T Consensus 37 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 104 (342)
T d2ovrb2 37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV------------RCMH 104 (342)
T ss_dssp SCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------EEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeE------------eeee
Confidence 6799999999999999985 7899999998777665 788999999999887766654432110 0111
Q ss_pred ecCceeEeeCCC--ceecC--CCccCCcccccc-cccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 142 VGPRWLAYSGSP--VVVSN--DGRVNPQHLMQS-RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 142 lgpRwLAyas~~--~i~~~--sgrvspq~ls~s-~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
.....++.+... +..++ ++.... .+... ............+.....+ |...+.+....... ..
T Consensus 105 ~~~~~~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d-------~~i~~~d~~~~~~~---~~- 172 (342)
T d2ovrb2 105 LHEKRVVSGSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRRVVSGAYD-------FMVKVWDPETETCL---HT- 172 (342)
T ss_dssp EETTEEEEEETTSEEEEEESSSCCEEE-EEECCSSCEEEEEECSSCEEEEETT-------SCEEEEEGGGTEEE---EE-
T ss_pred cccccccccccceeEEEeeccccccee-eeecccccceeeccccceeeeecCC-------CeEEEeecccceee---EE-
Confidence 111222222111 11111 110000 00000 0000000000011000000 11111111100000 00
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
+............. ...++.+..+|.|++||+..++++..+.+|...|.+++|++ .+|++++.||+ |+||
T Consensus 173 ~~~~~~~~~~~~~~-------~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~-i~iw 242 (342)
T d2ovrb2 173 LQGHTNRVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST-VKIW 242 (342)
T ss_dssp ECCCSSCEEEEEEC-------SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC-EEEE
T ss_pred EcCcccccccccCC-------CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE-EEEE
Confidence 00000000000000 12456778899999999999999999999999999988765 69999999998 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCc--ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTN--AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~--a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
|+... .....+. +... ..+.+++|+ ++++++++.||+|+|||+.++.....+
T Consensus 243 d~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 243 DIKTG--------------QCLQTLQ-GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp ETTTC--------------CEEEEEC-STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ecccc--------------ccccccc-ccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence 98764 2223332 2222 235566554 579999999999999999876544444
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.67 E-value=2.4e-15 Score=158.37 Aligned_cols=103 Identities=8% Similarity=0.055 Sum_probs=81.7
Q ss_pred cCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 244 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~--v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+..||.|+|||+.++.. ...+..|..+|.+++|+|+|++|++++.||+ |+||++.... ........
T Consensus 69 ~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~-i~i~~~~~~~-----------~~~~~~~~ 136 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV-ISICYFEQEN-----------DWWVCKHI 136 (371)
T ss_dssp EETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS-EEEEEEETTT-----------TEEEEEEE
T ss_pred EECCCeEEEEeecccccccccccccccccccccccccccccceeecccCc-ceeeeeeccc-----------cccccccc
Confidence 34678999999987754 4556789999999999999999999999998 8999986530 11222223
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+++ ...|.+++|+||+++||+++.||+++||++...
T Consensus 137 ~~~~-~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~ 173 (371)
T d1k8kc_ 137 KKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173 (371)
T ss_dssp CTTC-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred cccc-ccccccccccccccceeccccCcEEEEEeeccC
Confidence 3333 345999999999999999999999999998654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=7e-15 Score=147.55 Aligned_cols=242 Identities=12% Similarity=0.162 Sum_probs=147.1
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CcE-EEEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s-~rl-LaVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
++|+|||+.+++++++++. ..+|.+|+|+ +.+ ++.+.|++|++||..+.++........... ....+
T Consensus 33 g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~----------~~~~~ 102 (355)
T d1nexb2 33 KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV----------RCLDI 102 (355)
T ss_dssp TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCE----------EEEEE
T ss_pred CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccc----------ccccc
Confidence 7799999999999999985 7899999996 344 455789999999999998877765432110 00111
Q ss_pred eec--CceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccc
Q 004015 141 AVG--PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 216 (779)
Q Consensus 141 Alg--pRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l 216 (779)
+.. .++++.++.+ +.+|+.......... . ................ . ......
T Consensus 103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~-~---~~~~~~------------- 158 (355)
T d1nexb2 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-----G--EEHDYPLVFHTPEENP-Y---FVGVLR------------- 158 (355)
T ss_dssp EEETTEEEEEEEETTSEEEEEECCC------------------CCCEEESCTTTCT-T---EEEEEE-------------
T ss_pred ccccccceeeeecCCCcEEEEEccCCceeccc-----c--ccceeccceecccccc-c---eeeeee-------------
Confidence 111 2455554332 223321100000000 0 0000000000000000 0 000000
Q ss_pred cCCCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE
Q 004015 217 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 296 (779)
Q Consensus 217 ~p~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw 296 (779)
.....+....+. ...++.+..++.|++||+.+++.+..+.+|...+.++.|+|++.++++++.||+ |+||
T Consensus 159 --~~~~~v~~~~~~-------~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~ 228 (355)
T d1nexb2 159 --GHMASVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIW 228 (355)
T ss_dssp --CCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEE
T ss_pred --eccccccccccc-------cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEee
Confidence 000000000000 113445667899999999999999999999999999999999999999999998 8999
Q ss_pred eCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 297 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 297 di~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
|+..+ ..+..+ .++ ...|.+++|++ ++|++++.||+|+|||+.... ..+..|.
T Consensus 229 d~~~~--------------~~~~~~-~~h-~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~ 281 (355)
T d1nexb2 229 DLENG--------------ELMYTL-QGH-TALVGLLRLSD--KFLVSAAADGSIRGWDANDYS--RKFSYHH 281 (355)
T ss_dssp ETTTC--------------CEEEEE-CCC-SSCCCEEEECS--SEEEEECTTSEEEEEETTTCC--EEEEEEC
T ss_pred ecccc--------------cccccc-ccc-ccccccccccc--ceeeeeecccccccccccccc--eeccccc
Confidence 99875 344444 343 34588999974 699999999999999998753 3444553
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.5e-14 Score=141.11 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=133.4
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEcCcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccccee
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 141 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~piA 141 (779)
++|+|||+.+++++++|+. ...|.+|+|++++|++ +.|+.|++||+.+.............. ....
T Consensus 35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~------------~~~~ 102 (293)
T d1p22a2 35 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV------------LHLR 102 (293)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE------------EEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccccccccccc------------cccc
Confidence 6799999999999999984 7899999999887776 678999999999998877765432110 0011
Q ss_pred ecCceeEeeCCC--ceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccCC
Q 004015 142 VGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 219 (779)
Q Consensus 142 lgpRwLAyas~~--~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p~ 219 (779)
.....++..... ...++.. ..+... ....+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~-~~~~~~~---------------- 136 (293)
T d1p22a2 103 FNNGMMVTCSKDRSIAVWDMA-----------------------------SPTDIT-LRRVLVG---------------- 136 (293)
T ss_dssp CCTTEEEEEETTSCEEEEECS-----------------------------SSSCCE-EEEEECC----------------
T ss_pred ccccceeecccccceeEeecc-----------------------------cccccc-ccccccc----------------
Confidence 111222222111 1111100 000000 0000000
Q ss_pred CcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCC
Q 004015 220 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 299 (779)
Q Consensus 220 ~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~ 299 (779)
....+..... ....+.....++.|++||+.+++++..+.+|...|..+.|+ +.+|++++.||+ |+|||+.
T Consensus 137 ~~~~v~~~~~-------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~ 206 (293)
T d1p22a2 137 HRAAVNVVDF-------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIE 206 (293)
T ss_dssp CSSCEEEEEE-------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETT
T ss_pred ccccccccee-------cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecc
Confidence 0000000000 00122345578999999999999999999999999888876 568999999998 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
.. ..+..+ .+.. ..| .++++++.+|++++.||+|+||++..
T Consensus 207 ~~--------------~~~~~~-~~~~-~~v--~~~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 207 CG--------------ACLRVL-EGHE-ELV--RCIRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp TC--------------CEEEEE-CCCS-SCE--EEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred cc--------------eeeeee-cccc-eee--eeccccceEEEEEcCCCEEEEEECCC
Confidence 65 233333 3322 224 35788899999999999999999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.1e-15 Score=148.20 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=79.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCC----------CEEEEEeCCCCEEEEEeCCCCCCCCCCcc
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSG----------ILLVTASVQGHNINIFKIIPGILGTSSAC 309 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG----------~lLATaS~DGt~I~Vwdi~~~~~g~~s~~ 309 (779)
++.+..+|.|+|||+.++..+.. +.+|..+|.+|+|+|++ .+||||+.||+ |+|||+...
T Consensus 177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~-------- 247 (287)
T d1pgua2 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRP-------- 247 (287)
T ss_dssp EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCT--------
T ss_pred cccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCC--------
Confidence 45567789999999999887654 67999999999998754 68999999998 899998753
Q ss_pred CCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 310 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 310 ~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
...+ ...+++. ..|.+++|+||+ .|++++.||+|+||++
T Consensus 248 -----~~~~-~~~~~h~-~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 248 -----MKII-KALNAHK-DGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp -----TCCE-EETTSST-TCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred -----CeEE-EEeCCCC-CCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 1122 3334543 459999999987 5788999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=2.6e-15 Score=155.78 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred cCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEEcCC-CCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 244 ADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f---~aHt~~IsaLaFSPd-G~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
+..+|.|++||+...+....+ .+|...|.+|+|+|| |.+||+++.||. |+|||+.++ ..+.
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~--------------~~~~ 242 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSG--------------EFLK 242 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTC--------------CEEE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccc--------------cccc
Confidence 346789999999988766654 467889999999996 789999999998 899999875 3445
Q ss_pred EeecCCCcccEEEEEEc---CCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 320 RLQRGLTNAVIQDISFS---DDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFS---pDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.+. ++. ..|.++.|+ |||++|++++.|++|+|||+........+..|
T Consensus 243 ~l~-~~~-~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 292 (325)
T d1pgua1 243 YIE-DDQ-EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292 (325)
T ss_dssp ECC-BTT-BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ccc-ccc-cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence 553 322 223333443 68999999999999999999876555555555
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=7.1e-15 Score=152.37 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=125.0
Q ss_pred CEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CcEE-EEEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s---~rlL-aVs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
..+++|+..+++++.+++. ...|.+++|+ +.++ +.+.++.|++||+.+++...++.++... ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~------------~~ 206 (325)
T d1pgua1 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------------GS 206 (325)
T ss_dssp CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------------TC
T ss_pred ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCC------------CC
Confidence 5689999999999999874 6789999995 2334 4567899999999998877777553210 00
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
++ ..+++. |+ .+.
T Consensus 207 ~v----~~v~~~-------------pd-------------~~~------------------------------------- 219 (325)
T d1pgua1 207 FV----RDVEFS-------------PD-------------SGE------------------------------------- 219 (325)
T ss_dssp CE----EEEEEC-------------ST-------------TCC-------------------------------------
T ss_pred cc----EEeeec-------------cc-------------cce-------------------------------------
Confidence 11 112221 10 001
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEc---CCCCEEEEEeCCCCEEEE
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD---PSGILLVTASVQGHNINI 295 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFS---PdG~lLATaS~DGt~I~V 295 (779)
.++.+..||.|+|||+.+++++.+|++|..+|..+.|+ |||++|++++.||+ |+|
T Consensus 220 ---------------------~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~i 277 (325)
T d1pgua1 220 ---------------------FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRV 277 (325)
T ss_dssp ---------------------EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEE
T ss_pred ---------------------eccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEE
Confidence 12334568999999999999999999999998887777 89999999999987 999
Q ss_pred EeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEE--EEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 296 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ--DISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 296 wdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~--sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
||+..+ ..+..+..+.....+. .++|.++ .+|++++.||+|+||||
T Consensus 278 wd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 278 WDVTTS--------------KCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EETTTT--------------EEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EECCCC--------------CEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 999875 3333332222222233 4444444 47889999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.61 E-value=1.5e-14 Score=145.36 Aligned_cols=98 Identities=10% Similarity=0.227 Sum_probs=75.4
Q ss_pred cCCCCeEEEEECCCCcEE---EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 244 ADNVGMVIVRDIVSKNVI---AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v---~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
+..+|.|++||+.++..+ ..+.+|..+|++|+|+|+|++||+|+.||+ |+|||+... ....+..
T Consensus 197 ~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~------------~~~~~~~ 263 (299)
T d1nr0a2 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKP------------SDHPIII 263 (299)
T ss_dssp EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCT------------TSCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccceEEEcCCCE-EEEEECCCC------------CcceEEE
Confidence 456789999999887654 446689999999999999999999999997 899999864 1122222
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 321 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
..++....|.+++| +++++|++++.||+|+||||
T Consensus 264 -~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 264 -KGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp -TTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred -ecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 22333344666654 66789999999999999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=2.2e-13 Score=136.04 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=84.6
Q ss_pred CCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 245 DNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..++.|++|++........+. .|..+|++|+|+|+|++||+++.||. |+|||+... ..+.....
T Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~--------------~~~~~~~~ 202 (287)
T d1pgua2 138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSR--------------EVKTSRWA 202 (287)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEECCSC
T ss_pred cccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccc--------------cccccccc
Confidence 344689999998877766665 68889999999999999999999998 899999865 22222222
Q ss_pred CCCcccEEEEEEcCC----------CCEEEEEeCCCeEEEEecCCCCCcee-eccCCC
Q 004015 324 GLTNAVIQDISFSDD----------SNWIMISSSRGTSHLFAINPLGGSVN-FQPTDA 370 (779)
Q Consensus 324 G~t~a~I~sIaFSpD----------g~~LAtgS~DGTVhIwdl~~~gg~~~-~~~H~~ 370 (779)
+ +...|.+++|+|+ +.+||+|+.|++|+||++...+.... +.+|..
T Consensus 203 ~-h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~ 259 (287)
T d1pgua2 203 F-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259 (287)
T ss_dssp C-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred c-cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence 3 2356999999874 56899999999999999977554443 356743
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=9.4e-14 Score=141.23 Aligned_cols=207 Identities=12% Similarity=0.131 Sum_probs=139.4
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccce
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 140 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~pi 140 (779)
..|++||+++++..........|.+++|+ +++|++ +.++.+++||+.++++...+..+... ...+
T Consensus 66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 133 (360)
T d1k32a3 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM------------ITDF 133 (360)
T ss_dssp EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC------------CCCE
T ss_pred CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc------------ccch
Confidence 47999999999987766778999999996 556655 67889999999999988888665321 1123
Q ss_pred eecC--ceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 141 AVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 141 Algp--RwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+++| ++|||.... .
T Consensus 134 ~~spdg~~la~~~~~------------------------------------~---------------------------- 149 (360)
T d1k32a3 134 TISDNSRFIAYGFPL------------------------------------K---------------------------- 149 (360)
T ss_dssp EECTTSCEEEEEEEE------------------------------------C----------------------------
T ss_pred hhccceeeeeeeccc------------------------------------c----------------------------
Confidence 4433 555554100 0
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeC
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 298 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi 298 (779)
.....+..++.+++||+.+++.. .+..|...+..++|+|||++|++++.++. +++|+.
T Consensus 150 --------------------~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~ 207 (360)
T d1k32a3 150 --------------------HGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDR 207 (360)
T ss_dssp --------------------SSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECS
T ss_pred --------------------ccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCc-eEcccc
Confidence 00112345678999999987654 55567788999999999999999999987 788875
Q ss_pred CCCCC---------------CCCC-----------c------cC----------CCCc----------------------
Q 004015 299 IPGIL---------------GTSS-----------A------CD----------AGTS---------------------- 314 (779)
Q Consensus 299 ~~~~~---------------g~~s-----------~------~~----------~~~s---------------------- 314 (779)
..... .... . .+ ..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (360)
T d1k32a3 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 287 (360)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred cccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCC
Confidence 43200 0000 0 00 0000
Q ss_pred -----------eeEEEEeecCCC---cccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 315 -----------YVHLYRLQRGLT---NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 315 -----------~~~l~~l~rG~t---~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
...++.+..+.. ...|.+++|||||++|++++.||+|+||++...+.+.++..+
T Consensus 288 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d 355 (360)
T d1k32a3 288 AAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355 (360)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred eeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence 001122211100 123778999999999999999999999999998887777665
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.8e-13 Score=135.51 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=78.7
Q ss_pred ccccCCCCeEEEEECCCCcEE---EEeccCCCCeEEEEE-cCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 241 FPDADNVGMVIVRDIVSKNVI---AQFRAHKSPISALCF-DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v---~~f~aHt~~IsaLaF-SPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
++.+..+|.|++||+...... .....+...+.+.++ +.++..+++++.||. +.+|++......... ...
T Consensus 163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~------~~~ 235 (342)
T d1yfqa_ 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNS------SKR 235 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTC------TTC
T ss_pred eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeec------ccc
Confidence 445667899999999876532 223345556666555 557889999999997 899998764111100 111
Q ss_pred EEEEeecC-----CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 317 HLYRLQRG-----LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 317 ~l~~l~rG-----~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+...+. .....|.+|+|+|++++||+|+.||+|+|||+........+
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 11222221 11234899999999999999999999999999876444333
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=5.8e-14 Score=140.73 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=120.0
Q ss_pred CCEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CcEEE-EEeCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCcccccc
Q 004015 63 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf-~s~V~sV~~s--~rlLa-Vs~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
...|++||+.+++.+..+.. ...+..+.++ +.+++ .+.++.|++||+.+++++..+..|... ..
T Consensus 180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~------------v~ 247 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL------------VG 247 (355)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------CC
T ss_pred cceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc------------cc
Confidence 46799999999999998874 6778888885 44554 578899999999999999988776321 11
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
.+++++++
T Consensus 248 ~~~~~~~~------------------------------------------------------------------------ 255 (355)
T d1nexb2 248 LLRLSDKF------------------------------------------------------------------------ 255 (355)
T ss_dssp EEEECSSE------------------------------------------------------------------------
T ss_pred ccccccce------------------------------------------------------------------------
Confidence 12211111
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE-EEcCCCCEEEEEeCCCCEEEEEe
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL-CFDPSGILLVTASVQGHNINIFK 297 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaL-aFSPdG~lLATaS~DGt~I~Vwd 297 (779)
++.+..+|.|++||+.+... .+..|...+.++ .|++++++|++++ ||+ |+|||
T Consensus 256 ----------------------l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~-i~vwd 309 (355)
T d1nexb2 256 ----------------------LVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS-ENQ-FNIYN 309 (355)
T ss_dssp ----------------------EEEECTTSEEEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEEE-TTE-EEEEE
T ss_pred ----------------------eeeeecccccccccccccce--ecccccCCceEEEEEcCCCCEEEEEe-CCE-EEEEE
Confidence 12335678999999998764 455676666664 5788999888876 666 99999
Q ss_pred CCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEec
Q 004015 298 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 356 (779)
Q Consensus 298 i~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl 356 (779)
+.++ ..+.....++ ...|++++|+|+ ..|++++.||+++||.+
T Consensus 310 ~~tg--------------~~~~~~~~~~-~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 310 LRSG--------------KLVHANILKD-ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTTC--------------CBCCSCTTTT-CSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCCC--------------CEEEEEecCC-CCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 9876 2222222343 345999999997 57889999999777654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=9.6e-14 Score=147.06 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=66.3
Q ss_pred CeEEEEECCCCcEEEEec-------------cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFR-------------AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 314 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-------------aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s 314 (779)
+.|+|||+.+++++..+. +|...|++|+|+|||++|||||.||+ |+|||+.++
T Consensus 256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-v~vWd~~~g------------- 321 (393)
T d1sq9a_ 256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK------------- 321 (393)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT-------------
T ss_pred ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-EEEEECCCC-------------
Confidence 579999999988877774 79999999999999999999999997 999999876
Q ss_pred eeEEEEeecCCCcc---cEEEEEEcCCCCEEEEEe
Q 004015 315 YVHLYRLQRGLTNA---VIQDISFSDDSNWIMISS 346 (779)
Q Consensus 315 ~~~l~~l~rG~t~a---~I~sIaFSpDg~~LAtgS 346 (779)
..+++| +|+... ....++|+|++..+++++
T Consensus 322 -~~~~~l-~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 322 -ERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp -EEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred -CEEEEE-CCcCCcccCCccEEEECCCCCEEEEcc
Confidence 566666 454322 123578888888876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=3e-13 Score=145.50 Aligned_cols=112 Identities=8% Similarity=0.041 Sum_probs=80.5
Q ss_pred CCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEEcCCCCEEEE-------EeCCCCEEEEEeCCCCCCCCCCccC
Q 004015 245 DNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVT-------ASVQGHNINIFKIIPGILGTSSACD 310 (779)
Q Consensus 245 ~~dG~V~VwDl~s-------~~~v~~f~aHt~~IsaLaFSPdG~lLAT-------aS~DGt~I~Vwdi~~~~~g~~s~~~ 310 (779)
..++.+.+|+... .+.+..+.+|...+..++|+|||++|++ ++.+++ |+|||+.++..
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~------- 344 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDA------- 344 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTS-------
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCc-------
Confidence 4678899998765 3688899999999999999999999994 455666 89999987510
Q ss_pred CCCceeEEEEee----cCCCcccEEEEEEcCCCCEEEEE-----eCCCeEEEEecCCCCCceeeccC
Q 004015 311 AGTSYVHLYRLQ----RGLTNAVIQDISFSDDSNWIMIS-----SSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 311 ~~~s~~~l~~l~----rG~t~a~I~sIaFSpDg~~LAtg-----S~DGTVhIwdl~~~gg~~~~~~H 368 (779)
...+.... -+.....|..++|||||++|..+ +.+|+|+|||..+......+.++
T Consensus 345 ----~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 345 ----KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp ----CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ----CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 11111100 01112348899999999987543 46899999999987655455544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.1e-13 Score=130.66 Aligned_cols=100 Identities=14% Similarity=0.226 Sum_probs=75.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
+..+|.|+|||+.+...+..+.+|...|.+ +++++.+|++++.||+ |+|||+......... .....+..+ .
T Consensus 194 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~-----~~~~~~~~~-~ 264 (293)
T d1p22a2 194 GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAP-----AGTLCLRTL-V 264 (293)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSC-----TTTTEEEEE-C
T ss_pred ecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCcccccc-----CCceeeEEe-c
Confidence 456789999999999999999999999875 5678899999999998 899997543110000 011234444 4
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 355 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwd 355 (779)
++. ..|.+++| |+++|++++.||+|+|||
T Consensus 265 ~H~-~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 265 EHS-GRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCS-SCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred CCC-CCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 443 45889999 567899999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.48 E-value=8.3e-13 Score=134.10 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=78.6
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC---------CEEEEEeCCCCCCCCCCccCCCCce
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG---------t~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
..++.+++||+.++++...+..|...+.+++|+|||++||.++.++ ..+++|++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~-------------- 169 (360)
T d1k32a3 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------------- 169 (360)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------
T ss_pred ccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC--------------
Confidence 4567899999999999999999999999999999999999765332 24789998764
Q ss_pred eEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 316 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 316 ~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.. ..+..+ ...+..++|||||++|++++.|+++++|+....
T Consensus 170 ~~-~~~~~~--~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 170 KI-FAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EE-EECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred ce-eeeccc--ccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 22 222222 245788999999999999999999999997654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.47 E-value=2.6e-11 Score=121.78 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=83.8
Q ss_pred cCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 244 ADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~-f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
....+.+.+||+.++..... +..|...+..+.+++++.+++.++.+ . |.+||+.++ ..+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~d~~~~--------------~~~~~~~ 289 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-LAKYDLKQR--------------KLIKAAN 289 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-EEEEETTTT--------------EEEEEEE
T ss_pred ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-e-EEEEECCCC--------------cEEEEEc
Confidence 34456789999998876554 55788899999999999988887764 4 899998875 4444444
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeeccC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 368 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~H 368 (779)
.+ ..+.+++|||||++|++++.|++|+|||+.+....-.++.+
T Consensus 290 ~~---~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 290 LD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp CS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 44 24889999999999999999999999999987666666544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.46 E-value=1.1e-11 Score=122.81 Aligned_cols=253 Identities=14% Similarity=0.141 Sum_probs=139.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEE--eCCeEEEEeCCCCcEEEEEecCCcccCCCCCCCccccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 139 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs--~d~~I~IwD~~T~e~l~tl~t~p~~~~~p~s~~~~~~~~p 139 (779)
++|.+||++|++.+++++....+..|+|+ +++|+++ .+++|++||+.+++++.++..+..+. .
T Consensus 12 ~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-------------~ 78 (301)
T d1l0qa2 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-------------G 78 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-------------E
T ss_pred CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-------------c
Confidence 67999999999999999998889999997 5666443 56899999999999999987653221 1
Q ss_pred eeecC--ceeEee-CC-C-ceecC--CCccCCccccccc--ccccccCCCcceeeeecccccchhceeeecCCccccccc
Q 004015 140 LAVGP--RWLAYS-GS-P-VVVSN--DGRVNPQHLMQSR--SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 210 (779)
Q Consensus 140 iAlgp--RwLAya-s~-~-~i~~~--sgrvspq~ls~s~--~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls 210 (779)
+++.+ .++... .. . ...++ .+.. ...+.... .......+|..+...... ... + .+.+.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~~~~~~~~~-~~~----~-~~~~~~~~~~~ 151 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKTGKSPLGLALSPDGKKLYVTNNG-DKT----V-SVINTVTKAVI 151 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSSEEEEEECTTSSEEEEEETT-TTE----E-EEEETTTTEEE
T ss_pred cccccccccccccccccceeeeccccccee-eeeccccccceEEEeecCCCeeeeeecc-ccc----e-eeeecccccee
Confidence 23322 222222 11 1 11221 1110 00000000 000011133322111100 000 0 00000000000
Q ss_pred cccccccCCCcCcccc-c-cCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 004015 211 QYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV 288 (779)
Q Consensus 211 ~y~~~l~p~~~~si~s-a-~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~ 288 (779)
...+.. ..+.. . .++.. ..+......+.+.+|+....+....+..+. .+..++|+++|..++.++.
T Consensus 152 ----~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~ 219 (301)
T d1l0qa2 152 ----NTVSVG-RSPKGIAVTPDGT------KVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNV 219 (301)
T ss_dssp ----EEEECC-SSEEEEEECTTSS------EEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEE
T ss_pred ----eecccC-CCceEEEeecccc------ceeeecccccccccccccceeeeecccccC-Ccceeeccccccccccccc
Confidence 000000 00000 0 11100 012233455788899998888777766554 4677999999998876654
Q ss_pred CC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCCceee
Q 004015 289 QG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 289 DG--t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
++ ..|.+||+.++ ..+..+.-+ ..+.+++|||||++| ++++.|++|+|||+.+.....++
T Consensus 220 ~~~~~~v~v~D~~t~--------------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 220 DKYFNTVSMIDTGTN--------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp CSSCCEEEEEETTTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cceeeeeeeeecCCC--------------eEEEEEcCC---CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 42 24899998875 344444333 347899999999987 56678999999999886544444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=1.5e-11 Score=123.15 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=82.3
Q ss_pred cCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 244 ADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~-~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
...++.+.+||+.++.... .+..|...+.+++++|++.+++.++ ++ |++||+.++ ..+.++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d~~~~--------------~~~~~~~ 277 (337)
T d1pbyb_ 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFDLEKN--------------ASIKRVP 277 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEETTTT--------------EEEEEEE
T ss_pred cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEEECCCC--------------cEEEEEc
Confidence 3455689999999887654 4667888899999999999998875 44 899999875 3444443
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceeecc
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~~~ 367 (779)
.+ ..+.+++|||||++|++++.|++|+|||+.+......++.
T Consensus 278 ~~---~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 278 LP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CC---CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 33 3478999999999999999999999999998766555643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.8e-12 Score=128.18 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred ccccCCCCeEEEEECCCCcE---------E------EEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNV---------I------AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 305 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~---------v------~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~ 305 (779)
++.+..+|.+.+|++..... . .....|...|++|+|+|+|.+||||+.||+ |+|||+...
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~---- 283 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR---- 283 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT----
T ss_pred EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCC----
Confidence 34456789999999864321 1 112367778999999999999999999998 899999875
Q ss_pred CCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 306 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 306 ~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
..+..+.+.. .+..++|+|++++||+++.|+++++|...
T Consensus 284 ----------~~l~~~~~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 284 ----------KKIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ----------EEEEECCCCS---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ----------cEEEEecCCC---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 5666665442 35578899999999999999999888653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.36 E-value=7.3e-11 Score=128.20 Aligned_cols=183 Identities=9% Similarity=-0.003 Sum_probs=125.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEE-EeCCeEEEEeCCCCcE--EEEEecCCcccCCCCCCCcccccc
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI--EYAILTNPIVMGHPSAGGIGIGYG 138 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaV-s~d~~I~IwD~~T~e~--l~tl~t~p~~~~~p~s~~~~~~~~ 138 (779)
++|.|||++|++++++|.....++.|+|+ +++|++ +.++.|.+||+.|++. ...+....
T Consensus 42 g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~---------------- 105 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---------------- 105 (432)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC----------------
Confidence 67999999999999999998889999997 677776 5689999999998764 33443211
Q ss_pred ceeecCceeEeeCCCceecCCCccCCcccccccccccccCCCcceeeeecccccchhceeeecCCccccccccccccccC
Q 004015 139 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 218 (779)
Q Consensus 139 piAlgpRwLAyas~~~i~~~sgrvspq~ls~s~~~s~~~s~g~~va~~A~~~sK~La~Gl~~lGd~~~~~ls~y~~~l~p 218 (779)
+++-++++. .+++ +|+.+
T Consensus 106 ----~~~~~~~s~--------------------~~Sp---DG~~l----------------------------------- 123 (432)
T d1qksa2 106 ----EARSIETSK--------------------MEGW---EDKYA----------------------------------- 123 (432)
T ss_dssp ----EEEEEEECC--------------------STTC---TTTEE-----------------------------------
T ss_pred ----CCCCeEEec--------------------ccCC---CCCEE-----------------------------------
Confidence 111122220 1111 33322
Q ss_pred CCcCccccccCCCCCCCccCCcccccCCCCeEEEEECCCCcEEEEeccCC-----------CCeEEEEEcCCCCEEEE-E
Q 004015 219 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----------SPISALCFDPSGILLVT-A 286 (779)
Q Consensus 219 ~~~~si~sa~~~~~~~g~v~g~~~s~~~dG~V~VwDl~s~~~v~~f~aHt-----------~~IsaLaFSPdG~lLAT-a 286 (779)
++....++.|+|||..+++++..+..|. ....++.|+|+|+.++. .
T Consensus 124 ----------------------~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 124 ----------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp ----------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ----------------------EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 1123456899999999999998887553 45667999999997754 4
Q ss_pred eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCC-CeEEEEecCCCCCc
Q 004015 287 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGS 362 (779)
Q Consensus 287 S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~gg~ 362 (779)
+.+++ |.+||.... ....+.++.-| ..+.+++|+|||+++++++.+ +++.+|+.......
T Consensus 182 ~~~~~-i~~~d~~~~------------~~~~~~~i~~g---~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 182 KETGK-ILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242 (432)
T ss_dssp TTTTE-EEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred ccCCe-EEEEEccCC------------CcceEEEEccc---CccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence 45554 899998754 11233444333 347899999999998877765 57888888765433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=8.6e-12 Score=133.87 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=90.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
+....+|.|+|||+.+++++.+|+.|. .+..|+|||||++|++++.||+ |++||+.++ ....++++
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~-v~vwd~~t~------------~~~~~~~i 101 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK------------EPTKVAEI 101 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSE-EEEEETTSS------------SCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCC-EEEEEccCC------------ceeEEEEE
Confidence 456688999999999999999999885 5899999999999999999986 899999875 22333444
Q ss_pred ecCCC-cccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCCceeeccCCC
Q 004015 322 QRGLT-NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 322 ~rG~t-~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
.-+.. ...+.+++|||||++|+++ ..++++.+||.........+..|..
T Consensus 102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence 33322 1236788999999997655 5899999999998766666666643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=1.7e-11 Score=133.32 Aligned_cols=115 Identities=8% Similarity=0.029 Sum_probs=91.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 242 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 242 ~s~~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
++...+|.|.|||..+++++..|..|. .+..++|||||++|++++.||+ |++||+.++ ......++
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~-v~~~d~~t~------------~~~~~~~i 101 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGK-VNMIDLWMK------------EPTTVAEI 101 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSE-EEEEETTSS------------SCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCC-EEEEEeeCC------------CceEEEEE
Confidence 566788999999999999999999874 6899999999999999999987 899999875 12334444
Q ss_pred ecCCCc-ccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCCceeeccCCC
Q 004015 322 QRGLTN-AVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSVNFQPTDA 370 (779)
Q Consensus 322 ~rG~t~-a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg~~~~~~H~~ 370 (779)
..+... ..+.+.+|||||++| ++++.+++++|||..+......+..|..
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence 444322 236677889999986 6788899999999998776666666643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.18 E-value=3.3e-09 Score=109.04 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=70.3
Q ss_pred ccCCCCeEEEEECCCCcEE--EEeccCCC----------CeEEEEEcCCCCEEEEEeCCC---------CEEEEEeCCCC
Q 004015 243 DADNVGMVIVRDIVSKNVI--AQFRAHKS----------PISALCFDPSGILLVTASVQG---------HNINIFKIIPG 301 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v--~~f~aHt~----------~IsaLaFSPdG~lLATaS~DG---------t~I~Vwdi~~~ 301 (779)
....++.+.+|+..+.... ..+..+.. ....++++|+|+.++....++ ..|.+||+.++
T Consensus 229 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~ 308 (373)
T d2madh_ 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence 3446778888888876532 22223322 234466777777655433322 23678887664
Q ss_pred CCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE--EEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 302 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW--IMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 302 ~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~--LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
..+..+..+ ..+.+++|||||++ +++++.|++|+|||+.++.....+..|.
T Consensus 309 --------------~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 309 --------------QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred --------------cEEEEecCC---CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence 233333322 34889999999994 5788999999999999987666666553
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=1.5e-09 Score=110.31 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred ccccCCCCeEEEEECCCCcEE--EEeccCC----------CCeEEEEEcCCCCEEEEEeCCC---------CEEEEEeCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVI--AQFRAHK----------SPISALCFDPSGILLVTASVQG---------HNINIFKII 299 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v--~~f~aHt----------~~IsaLaFSPdG~lLATaS~DG---------t~I~Vwdi~ 299 (779)
++....+|.+.+||+..++.. .....|. .....++|+|+|++++.++.++ ..|.+||..
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 288 (355)
T d2bbkh_ 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 288 (355)
T ss_dssp EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence 344567899999999987542 2222222 2234588999999887765543 358999988
Q ss_pred CCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC--EEEEEeCCCeEEEEecCCCCCceeeccCC
Q 004015 300 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN--WIMISSSRGTSHLFAINPLGGSVNFQPTD 369 (779)
Q Consensus 300 ~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~LAtgS~DGTVhIwdl~~~gg~~~~~~H~ 369 (779)
++ +.+.++.-+ ..+.+++|||||+ ++++++.|++|+|||+.+......+..+.
T Consensus 289 t~--------------~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 289 TG--------------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp TC--------------CEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CC--------------cEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence 75 233333322 2378999999998 45677789999999999876666666553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.99 E-value=1.3e-08 Score=99.99 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.++.|++||+.+++.+..+..|.. +..++|+++|++++.++.++..+.+|+...+ ..+..+...
T Consensus 52 ~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~- 115 (301)
T d1l0qa2 52 HSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--------------TVAGTVKTG- 115 (301)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------EEEEEEECS-
T ss_pred CCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccc--------------eeeeecccc-
Confidence 457899999999999999998865 5889999999988777766667999998765 333444322
Q ss_pred CcccEEEEEEcCCCCEEEEE-eCCCeEEEEecCCCCCceeecc
Q 004015 326 TNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtg-S~DGTVhIwdl~~~gg~~~~~~ 367 (779)
..+.+++|+||+++++.+ ..++++.+|+.........+..
T Consensus 116 --~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
T d1l0qa2 116 --KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (301)
T ss_dssp --SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred --ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence 247899999999988655 5578999999988655444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.2e-08 Score=101.56 Aligned_cols=102 Identities=8% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCC-----------CEEEEEeCCCCCCCCCCc
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKS-----PISALCFDPSGILLVTASVQG-----------HNINIFKIIPGILGTSSA 308 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~-----~IsaLaFSPdG~lLATaS~DG-----------t~I~Vwdi~~~~~g~~s~ 308 (779)
..+|.|.+||+.+++++..+..+.. .+..++|+|||++|+++..+. ..+.+||..+.
T Consensus 53 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 125 (337)
T d1pbyb_ 53 NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------- 125 (337)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-------
T ss_pred CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC-------
Confidence 3468999999999999998887643 445799999999998886531 23677887764
Q ss_pred cCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCCCceee
Q 004015 309 CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 365 (779)
Q Consensus 309 ~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~gg~~~~ 365 (779)
..+..+..+ ..+..++|+|||+++++++. .+.+||.........+
T Consensus 126 -------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~ 170 (337)
T d1pbyb_ 126 -------SRRKAFEAP---RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDK 170 (337)
T ss_dssp -------EEEEEEECC---SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEE
T ss_pred -------eEEEecccc---CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEe
Confidence 333333322 23678999999999999865 4778998775444344
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.9e-07 Score=93.14 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCeEEEEECCCCcEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 247 VGMVIVRDIVSKNVIAQ--FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~--f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
++.|.+|+......... ...|...+.++.|+|||+++++++.++..|.+|+...... ...........
T Consensus 104 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~ 173 (333)
T d1ri6a_ 104 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH----------LVAQDPAEVTT 173 (333)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC----------EEEEEEEEEEC
T ss_pred CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc----------ceeeeceeeee
Confidence 45677777766544333 3466677889999999999999998888899999876410 00111111111
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCce
Q 004015 325 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSV 363 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~ 363 (779)
........++|++++.++.... ..+...+|++.......
T Consensus 174 ~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 213 (333)
T d1ri6a_ 174 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 213 (333)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred ecCCCccEEEEeccceeEEeeccccCceEEEeecccccce
Confidence 1223368999999999987665 45678899886654433
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=1.3e-08 Score=101.72 Aligned_cols=104 Identities=9% Similarity=0.122 Sum_probs=73.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeC-CCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 004015 243 DADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLY 319 (779)
Q Consensus 243 s~~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~-DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~ 319 (779)
.+..++.|+|||+.+...+..++ .|.+.|..|+|||||++|++++. +++ |++|++.+. . .......
T Consensus 9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~-i~~~~i~~~-~---------~~~~~~~ 77 (333)
T d1ri6a_ 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR-VLAYRIAPD-D---------GALTFAA 77 (333)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTE-EEEEEECTT-T---------CCEEEEE
T ss_pred ECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCe-EEEEEEeCC-C---------CcEEEee
Confidence 44578999999998654444333 68899999999999999865554 665 899998764 0 0112212
Q ss_pred EeecCCCcccEEEEEEcCCCCEEEEEeC-CCeEEEEecCCCC
Q 004015 320 RLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLG 360 (779)
Q Consensus 320 ~l~rG~t~a~I~sIaFSpDg~~LAtgS~-DGTVhIwdl~~~g 360 (779)
...-+ ..+..++|||||++|++++. ++++.+|+.....
T Consensus 78 ~~~~~---~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~ 116 (333)
T d1ri6a_ 78 ESALP---GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116 (333)
T ss_dssp EEECS---SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred ecccC---CCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence 22112 23668999999999999985 6789999987653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=2.2e-08 Score=99.90 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=79.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEE-EEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 240 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLV-TASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 240 ~~~s~~~dG~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLA-TaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
.++.+..++.|.|||+.+++++.+++ .|...+.+|+|+|||++|+ +++.+++ |.+||+.++ ..
T Consensus 10 ~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~-v~~~d~~t~--------------~~ 74 (346)
T d1jmxb_ 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-IYGIDLDTC--------------KN 74 (346)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-EEEEETTTT--------------EE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc-EEEEeCccC--------------ee
Confidence 34566788999999999999999988 5667789999999999875 4455655 999999875 33
Q ss_pred EEEeecCCCc----ccEEEEEEcCCCCEEEEEeC------------CCeEEEEecCCCCC
Q 004015 318 LYRLQRGLTN----AVIQDISFSDDSNWIMISSS------------RGTSHLFAINPLGG 361 (779)
Q Consensus 318 l~~l~rG~t~----a~I~sIaFSpDg~~LAtgS~------------DGTVhIwdl~~~gg 361 (779)
+.++..+... ..+..++|||||++|++++. +..+.+|+..+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 3344332211 12457999999999988864 66777787766433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.56 E-value=1.9e-06 Score=89.14 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=53.6
Q ss_pred EEEEEcCCCCEEEEEeCCC--------CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCE--
Q 004015 272 SALCFDPSGILLVTASVQG--------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW-- 341 (779)
Q Consensus 272 saLaFSPdG~lLATaS~DG--------t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~-- 341 (779)
..++++|++..+..+..++ ..|.+||..++ +.+.++..+ ..+.+++|||||+.
T Consensus 267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--------------~~~~~~~~~---~~~~~~a~spDG~~~l 329 (368)
T d1mdah_ 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------------QTSGPISNG---HDSDAIIAAQDGASDN 329 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------------CEEECCEEE---EEECEEEECCSSSCEE
T ss_pred eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--------------cEeEEecCC---CceeEEEECCCCCEEE
Confidence 3488999999876654332 24889998875 233333322 24789999999983
Q ss_pred EEEEeCCCeEEEEecCCCCCceeec
Q 004015 342 IMISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 342 LAtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
++++..|++|+|||..+......+.
T Consensus 330 y~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 330 YANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEEECC
T ss_pred EEEeCCCCeEEEEECCCCCEEEEEE
Confidence 4667789999999998875444443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.46 E-value=3.9e-06 Score=85.47 Aligned_cols=102 Identities=12% Similarity=-0.022 Sum_probs=72.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCe-------EEEEEcCCCCEEEEEeCC-CCEEEEEeCCCCCCCCCCccCCCCcee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPI-------SALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYV 316 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~I-------saLaFSPdG~lLATaS~D-Gt~I~Vwdi~~~~~g~~s~~~~~~s~~ 316 (779)
..++.|.|||..+++++..+..|.... ..+.|++||+.++....+ +..+.+|+.... .
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~--------------~ 159 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS--------------S 159 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC--------------e
Confidence 456899999999999999888776554 347889999977665543 234778887653 1
Q ss_pred EEEEeecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCCCceeec
Q 004015 317 HLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 317 ~l~~l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~gg~~~~~ 366 (779)
.+... ....+++|+|+++.+ ++.+.|+++.+|+...........
T Consensus 160 ~~~~~------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 160 DDQLL------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred EEEEe------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 11111 125689999999865 578899999999998765544443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.35 E-value=2.1e-06 Score=91.78 Aligned_cols=108 Identities=8% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC-
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG- 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG- 324 (779)
..|.+.|||+.+++ +..+..|...+..+.|||||++||..... .+.+|+...+........+. ....+.-...
T Consensus 90 ~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~~--~l~~~~~~~g~~~~~t~~~~---~~~~~~g~~d~ 163 (470)
T d2bgra1 90 YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVWNN--DIYVKIEPNLPSYRITWTGK---EDIIYNGITDW 163 (470)
T ss_dssp EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEETT--EEEEESSTTSCCEECCSCCB---TTTEEESBCCH
T ss_pred cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEeecc--cceEEECCCCceeeeeeccC---CCcccccccce
Confidence 35789999999987 45688899999999999999999997643 48999887651100000000 0000100000
Q ss_pred ----CCcccEEEEEEcCCCCEEEEEeCCCe-EEEEecCCC
Q 004015 325 ----LTNAVIQDISFSDDSNWIMISSSRGT-SHLFAINPL 359 (779)
Q Consensus 325 ----~t~a~I~sIaFSpDg~~LAtgS~DGT-VhIwdl~~~ 359 (779)
........+.|||||++||....|.+ +..|.+..+
T Consensus 164 ~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~ 203 (470)
T d2bgra1 164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (470)
T ss_dssp HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred eeeeeecCCccccEECCCCCccceeEecCCcCceEEEEee
Confidence 00011345789999999999987765 666666433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.18 E-value=2.8e-06 Score=85.58 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=73.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
..+.|.|||..+++++.++..+..+ .++|||||++|+.++. +|. |.|||+.++
T Consensus 26 ~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~-v~v~D~~t~-------------- 88 (355)
T d2bbkh_ 26 AVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY-VEVFDPVTL-------------- 88 (355)
T ss_dssp SSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTC--------------
T ss_pred CcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCE-EEEEECCCC--------------
Confidence 4568999999999999999877655 6999999998887643 554 899999875
Q ss_pred eEEEEeecCC-----CcccEEEEEEcCCCCEEEEEe--CCCeEEEEecCCCCCceeec
Q 004015 316 VHLYRLQRGL-----TNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQ 366 (779)
Q Consensus 316 ~~l~~l~rG~-----t~a~I~sIaFSpDg~~LAtgS--~DGTVhIwdl~~~gg~~~~~ 366 (779)
..+..+.... .......++|+||++++++++ .+..+++|+.........+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 146 (355)
T d2bbkh_ 89 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146 (355)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence 2222221111 011134689999999988775 46789999998764444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.16 E-value=2.8e-06 Score=87.80 Aligned_cols=105 Identities=8% Similarity=-0.024 Sum_probs=75.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCCEEEEEeCCCCCCCCCCccCCCCce
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 315 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~----------DGt~I~Vwdi~~~~~g~~s~~~~~~s~ 315 (779)
....|.+||..+++++.++..+..+ .++|+|||++|+.++. +++ |.+||..++
T Consensus 44 g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~-v~v~D~~t~-------------- 106 (368)
T d1mdah_ 44 GTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY-VEVFDPVTF-------------- 106 (368)
T ss_dssp SSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE-EEEECTTTC--------------
T ss_pred CcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCe-EEEEECCCC--------------
Confidence 3456888899999999999888766 5899999999998763 444 899998875
Q ss_pred eEEEEe--ecCC---CcccEEEEEEcCCCCEEEEEe-CCCeEEEEecCCCCCceeecc
Q 004015 316 VHLYRL--QRGL---TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP 367 (779)
Q Consensus 316 ~~l~~l--~rG~---t~a~I~sIaFSpDg~~LAtgS-~DGTVhIwdl~~~gg~~~~~~ 367 (779)
..+..+ ..+. .......++|||||++|++++ .++++.+||+........+..
T Consensus 107 ~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~ 164 (368)
T d1mdah_ 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS 164 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence 233332 2111 111134699999999999887 579999999988654444433
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=6.3e-06 Score=87.96 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=71.5
Q ss_pred CCCeEEEEECCCCcEEEEec-----cCCCCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCC
Q 004015 246 NVGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~-----aHt~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
.+|.+.+||+.+++....+. .|...|.+++|||||++||.++. +|. +.|||+..+
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~-~~l~d~~~~---------- 102 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDIYDLNKR---------- 102 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTT----------
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce-EEEEECCCC----------
Confidence 45789999999998766554 44578999999999999998864 233 678998875
Q ss_pred CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 312 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+..+ .+ ....+..+.|||||++||.. .++.+++|++...
T Consensus 103 -----~~~~l-~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g 142 (470)
T d2bgra1 103 -----QLITE-ER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNL 142 (470)
T ss_dssp -----EECCS-SC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred -----ccccc-cc-CCccccccccccCcceeeEe-ecccceEEECCCC
Confidence 11222 12 23348899999999999985 5678999998654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.73 E-value=0.00036 Score=75.74 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATa-S~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..++.+.|++....+.++.++....| ..+.++|||++|+.+ ..+++ |.|||+......-...-+....+. ....-
T Consensus 235 ~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~--~~~~~ 310 (441)
T d1qnia2 235 GDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIV--AEPEL 310 (441)
T ss_dssp TTCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEE--ECCBC
T ss_pred CCCCcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEE--eeccc
Confidence 34577888888888888999887765 568999999987655 45555 999998642000000000000111 11111
Q ss_pred CCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 324 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 324 G~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
|.- ..-.+|+++|.-..+...|..|..|++.
T Consensus 311 glg---plh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 311 GLG---PLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp CSC---EEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ccC---cccceecCCceEEEcccccceEEEeccc
Confidence 111 3457899999988899999999999994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.60 E-value=0.00083 Score=69.99 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=49.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC-C----CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC-cccEEEEEEcC-CCCEE
Q 004015 270 PISALCFDPSGILLVTASVQ-G----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-NAVIQDISFSD-DSNWI 342 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~D-G----t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t-~a~I~sIaFSp-Dg~~L 342 (779)
....|.|+|||++|.++... . ..|-+|++... +.......+....+ ...-..|+|+| ||+||
T Consensus 256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~-----------g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l 324 (365)
T d1jofa_ 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-----------GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-----------SCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred CccceEECCCCCEEEEEcccCCCccceEEEEEEecCC-----------CceeeEeEeeEEEcCCCCccEEEecCCCCCEE
Confidence 35679999999998876431 1 12566666542 11222222222111 12246799998 89998
Q ss_pred EEEe-CCCeEEEEecCCCC
Q 004015 343 MISS-SRGTSHLFAINPLG 360 (779)
Q Consensus 343 AtgS-~DGTVhIwdl~~~g 360 (779)
+++. .+++|.||++....
T Consensus 325 ~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 325 AITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEECSSSCEEEEEEEETTE
T ss_pred EEEeCCCCeEEEEEEeCCc
Confidence 8775 67999999997654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.024 Score=54.10 Aligned_cols=92 Identities=20% Similarity=0.162 Sum_probs=58.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcc
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 328 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a 328 (779)
.|.++++..+.. ..+..+........|+|+|+.++..+.++....||..... . .... .+ . ...
T Consensus 152 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~---~--------~~~~--~~-~--~~~ 214 (269)
T d2hqsa1 152 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---T--------GGVQ--VL-S--STF 214 (269)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---T--------CCEE--EC-C--CSS
T ss_pred eEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecc---c--------ccce--Ee-e--cCc
Confidence 566677766543 3444556677788999999999988777655666654432 0 0111 11 1 122
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---eEEEEecC
Q 004015 329 VIQDISFSDDSNWIMISSSRG---TSHLFAIN 357 (779)
Q Consensus 329 ~I~sIaFSpDg~~LAtgS~DG---TVhIwdl~ 357 (779)
.....+|||||++||-.+.++ .++++++.
T Consensus 215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 367889999999998766543 56777774
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.06 E-value=0.052 Score=55.80 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEe-CC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SR 348 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS-~D 348 (779)
-+.++.|+|||++|++++.....|.+|++... + ...................++|+||++++.+.. .+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g---------~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~ 214 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS--G---------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG 214 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTT--S---------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCC--C---------ceeeccceeecCCCCceEEEEECCCCceEEEeccCC
Confidence 36789999999999988875556888876542 1 112222221111122378899999999885554 68
Q ss_pred CeEEEEecCCCCCc
Q 004015 349 GTSHLFAINPLGGS 362 (779)
Q Consensus 349 GTVhIwdl~~~gg~ 362 (779)
++|.+|++......
T Consensus 215 ~~V~v~~~~~~~~~ 228 (365)
T d1jofa_ 215 NRICEYVIDPATHM 228 (365)
T ss_dssp TEEEEEEECTTTCC
T ss_pred CEEEEEEecCCCce
Confidence 89999999775443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.48 E-value=0.018 Score=56.83 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCCeEEEEECCCCcEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEee
Q 004015 245 DNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 322 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~--aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~ 322 (779)
...+.|.+||.. ++.+.+|- ++......|+++++|.++++-...+..|.+|+.. + ..+.++.
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G--------------~~~~~~~ 238 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G--------------QLISALE 238 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S--------------CEEEEEE
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C--------------CEEEEEe
Confidence 345789999975 45666663 4555678899999999888754444458898732 2 2333443
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 323 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 323 rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.+........||+.|||+++ +++.+.+|++|++...
T Consensus 239 ~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 239 SKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp ESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred CCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeee
Confidence 33333347899999999755 5567899999999765
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.38 E-value=0.0044 Score=66.94 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=67.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc------------------------------CCCCeEEEEEcCCCCEEEEEeCCC
Q 004015 241 FPDADNVGMVIVRDIVSKNVIAQFRA------------------------------HKSPISALCFDPSGILLVTASVQG 290 (779)
Q Consensus 241 ~~s~~~dG~V~VwDl~s~~~v~~f~a------------------------------Ht~~IsaLaFSPdG~lLATaS~DG 290 (779)
|.++..+|.|+|||+.+++.++.+.. |.-.++...++|||++|..++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 44567789999999999998888643 333456677789999998887766
Q ss_pred CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCC--EEEEEeCCCe
Q 004015 291 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN--WIMISSSRGT 350 (779)
Q Consensus 291 t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~--~LAtgS~DGT 350 (779)
..|.++|+.+. ....+..+..+ ..+..++|+||++ |++..+.+..
T Consensus 94 ~rVavIDl~t~------------k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 94 TRVARIRLDIM------------KTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp TEEEEEETTTT------------EEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCE
T ss_pred CEEEEEECCCC------------cEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcc
Confidence 67999999875 12222222212 2378999999999 6766665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.38 E-value=0.65 Score=47.21 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=48.3
Q ss_pred CCEEEEEECCCCcEEEEEeCCCCEEEEEE-cCcEEEEEeCCeEEEEeCCC-CcEEEEEecC
Q 004015 63 PTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT-LEIEYAILTN 121 (779)
Q Consensus 63 ~~tVrIWDL~Tge~V~tLkf~s~V~sV~~-s~rlLaVs~d~~I~IwD~~T-~e~l~tl~t~ 121 (779)
.++++|+|+.+.+.++++.|+.+|.-=+| +.+.|+...+..||-|++.. -+..+.+.-+
T Consensus 82 g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 82 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECC
T ss_pred CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhc
Confidence 47799999999999999999999977777 78999999999999999943 2344444444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.17 E-value=0.015 Score=58.03 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=59.9
Q ss_pred CcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcC
Q 004015 258 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 337 (779)
Q Consensus 258 ~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSp 337 (779)
.+++..|...+ .+..++|+|||++++|...+++ | |.+.+. + ....+..+ ...+.+++|++
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~-I--~~i~p~--g---------~~~~~~~~-----~~~~~gla~~~ 77 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGE-I--VSITPD--G---------NQQIHATV-----EGKVSGLAFTS 77 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTE-E--EEECTT--C---------CEEEEEEC-----SSEEEEEEECT
T ss_pred ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCE-E--EEEeCC--C---------CEEEEEcC-----CCCcceEEEcC
Confidence 34566776443 5788999999999998877764 4 444442 1 12222222 23588999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCce
Q 004015 338 DSNWIMISSSRGTSHLFAINPLGGSV 363 (779)
Q Consensus 338 Dg~~LAtgS~DGTVhIwdl~~~gg~~ 363 (779)
||+++++...++.+.+|+.....+..
T Consensus 78 dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 78 NGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCCeEEEecCCceEEEEEecccccce
Confidence 99999999999999888876654433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.12 E-value=0.75 Score=45.36 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=39.9
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEeCCeEEEEeCCCCcEEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEY 116 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~d~~I~IwD~~T~e~l~ 116 (779)
++|.-||.++++ +..+.++..+.++.+. ++++ ++....|+.||..+++...
T Consensus 40 ~~I~r~d~~~g~-~~~~~~~~~~~~i~~~~dg~l~-va~~~gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 40 RELHELHLASGR-KTVHALPFMGSALAKISDSKQL-IASDDGLFLRDTATGVLTL 92 (295)
T ss_dssp TEEEEEETTTTE-EEEEECSSCEEEEEEEETTEEE-EEETTEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCe-EEEEECCCCcEEEEEecCCCEE-EEEeCccEEeecccceeeE
Confidence 679999999987 4678888899988883 4455 4556789999999987543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.45 E-value=0.027 Score=53.51 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCC----EEEEEeCCCCCCCCCCccCCCCceeEEEEe
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGH----NINIFKIIPGILGTSSACDAGTSYVHLYRL 321 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~-DGt----~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l 321 (779)
.|.|.++|+.+++. ..|..+.+.+...+|||||+.||-... ++. .|.++++..+ ....+...
T Consensus 20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g------------~~~~lt~~ 86 (281)
T d1k32a2 20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG------------EIKRITYF 86 (281)
T ss_dssp TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT------------EEEECCCC
T ss_pred CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC------------ceEEeeec
Confidence 35788889998875 456667778899999999999986543 221 2445555443 11111000
Q ss_pred ecC--CCcccEEEEEEcCCCCEEEEEeC
Q 004015 322 QRG--LTNAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 322 ~rG--~t~a~I~sIaFSpDg~~LAtgS~ 347 (779)
..+ ........++|+|||++|+....
T Consensus 87 ~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 87 SGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred CCCccCccccccccccCCCCCEEEEEEc
Confidence 000 00112568899999999987644
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=95.18 E-value=0.059 Score=53.43 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..++.|..||.... ...+......+.+|+|+|||+++++...++. +.+|+.... . .....+..+..
T Consensus 46 ~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~-~~~~~~~~~-~---------~~~~~~~~~~~- 111 (302)
T d2p4oa1 46 HEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADS-IPVVSLVKS-D---------GTVETLLTLPD- 111 (302)
T ss_dssp TTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTS-CEEEEEECT-T---------SCEEEEEECTT-
T ss_pred CCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCce-EEEEEeccc-c---------cceeeccccCC-
Confidence 34577777775543 3344556678999999999999998877766 667765442 1 12233333322
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 004015 325 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 359 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~ 359 (779)
.....+++|.+|++++++.+.++.+..++....
T Consensus 112 --~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 112 --AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp --CSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred --ccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 223789999999999998888887777776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.09 E-value=0.93 Score=43.80 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=61.0
Q ss_pred CeEEEEECCCCcEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 248 GMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
+.|.+++.. +..+..+. ........++++++|.++++....+ .+.+++... ..+.++.....
T Consensus 93 ~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~-~~~~~~~~g---------------~~~~~~g~~~~ 155 (279)
T d1q7fa_ 93 HQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQNG---------------NVLHKFGCSKH 155 (279)
T ss_dssp CEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTTS---------------CEEEEEECTTT
T ss_pred ccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccc-eeeEeccCC---------------ceeeccccccc
Confidence 345555543 34444443 4456678899999999888766554 466776432 22334322222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEecC
Q 004015 327 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 357 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~ 357 (779)
......+++.++++.+++....++|++|+..
T Consensus 156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~ 186 (279)
T d1q7fa_ 156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 186 (279)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred ccccceeeeccceeEEeeeccccceeeeecC
Confidence 2347899999999999998889999999863
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.05 Score=51.73 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=52.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 249 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 249 ~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vw--di~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.|.|.|....... .+..+...+...+|||||+.||-.+.+.....+| +...+ . ...... .
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~------------~-~~~~~~----~ 81 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG------------A-VRQVAS----F 81 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------------C-EEEEEC----C
T ss_pred EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC------------c-eeEEee----e
Confidence 5788888755443 3344567788999999999999776654323344 33322 1 121221 2
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR 348 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D 348 (779)
...+....|||||++++..+.+
T Consensus 82 ~~~~~~~~~spdg~~i~~~~~~ 103 (269)
T d2hqsa1 82 PRHNGAPAFSPDGSKLAFALSK 103 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECT
T ss_pred ecccccceecCCCCeeeEeeec
Confidence 2347889999999999877653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.92 E-value=0.35 Score=46.45 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=55.5
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCc
Q 004015 248 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 327 (779)
Q Consensus 248 G~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~ 327 (779)
+.|..+|.............-.....|+|+++|.++++-...++ |..++.... ...+.. ..+.
T Consensus 161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~-------------~~~~~~-~~~~-- 223 (260)
T d1rwia_ 161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TSTVLP-FTGL-- 223 (260)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCS-------------CCEECC-CCSC--
T ss_pred ccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCC-------------eEEEEc-cCCC--
Confidence 45666666654433222244456688999999998888766654 555554321 111111 1121
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEecCCCC
Q 004015 328 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 360 (779)
Q Consensus 328 a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~~g 360 (779)
.....|+|++||..+++-..+++| +.+.+.+
T Consensus 224 ~~P~~i~~d~~g~l~vad~~~~rI--~~i~~~~ 254 (260)
T d1rwia_ 224 NTPLAVAVDSDRTVYVADRGNDRV--VKLTSLE 254 (260)
T ss_dssp CCEEEEEECTTCCEEEEEGGGTEE--EEECCCG
T ss_pred CCeEEEEEeCCCCEEEEECCCCEE--EEEeCCC
Confidence 235799999999987776666644 4555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.61 E-value=0.97 Score=42.11 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=37.2
Q ss_pred CEEEEEECCCCcEEEEEeCCCCEEEEEEc--CcEEEEEe--C-----CeEEEEeCCCCcEE
Q 004015 64 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--A-----AQVHCFDAATLEIE 115 (779)
Q Consensus 64 ~tVrIWDL~Tge~V~tLkf~s~V~sV~~s--~rlLaVs~--d-----~~I~IwD~~T~e~l 115 (779)
+-|.++|+.+|+...-...+..+...+|+ ++.||... + ..|+++++.+++..
T Consensus 21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 34888899999865433456788899997 67776532 1 25999999888754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.42 E-value=1.4 Score=47.63 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
...|.+.-||+.+++.+..++--. +...=.+.-.|.++.+++.||+ |+-||..++ +.|++++-+
T Consensus 435 ~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~-l~A~Da~tG--------------e~LW~~~l~ 498 (560)
T d1kv9a2 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQ 498 (560)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECS
T ss_pred ccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCc-EEEEECCCC--------------cEeEEEECC
Confidence 345889999999999988765221 1111122335678888999997 899999987 566666543
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeCCC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSSRG 349 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~DG 349 (779)
.. ..-.-+.|..||+ ||++.+..|
T Consensus 499 ~~-~~~~P~ty~~dGkqyv~v~aG~g 523 (560)
T d1kv9a2 499 SG-IVAAPMTFELAGRQYVAIMAGWG 523 (560)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEECCC
T ss_pred CC-ccccCEEEEECCEEEEEEEeCCC
Confidence 21 1111367778895 777665443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.035 Score=59.47 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=64.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCC---CCeEEEEEcCCCCEEEEEeC---------CCCEEEEEeCCCCCCCCCCccCC
Q 004015 244 ADNVGMVIVRDIVSKNVIAQFRAHK---SPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDA 311 (779)
Q Consensus 244 ~~~dG~V~VwDl~s~~~v~~f~aHt---~~IsaLaFSPdG~lLATaS~---------DGt~I~Vwdi~~~~~g~~s~~~~ 311 (779)
...+|.|.+||+.+++....+..++ -.+....|||||++|+.+.. .|. +.|+|+.++
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~-~~i~d~~~~---------- 101 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY-YVLSKIPHG---------- 101 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE-EEEEESSSC----------
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeecccc-EEEEEccCC----------
Confidence 3466889999999876544444332 36778899999998877643 233 677888765
Q ss_pred CCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 004015 312 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 358 (779)
Q Consensus 312 ~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DGTVhIwdl~~ 358 (779)
....+... ......++...|||||++||-.. ++-+.+.+...
T Consensus 102 --~~~~l~~~--~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 102 --DPQSLDPP--EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp --CCEECCCT--TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred --ceeeccCc--cCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence 11222111 01122366789999999999876 56677777754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.19 E-value=4.3 Score=39.80 Aligned_cols=77 Identities=9% Similarity=0.133 Sum_probs=48.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEE-EEeecCCC-cccEEEEEEcCCCCEEEEEeC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL-YRLQRGLT-NAVIQDISFSDDSNWIMISSS 347 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l-~~l~rG~t-~a~I~sIaFSpDg~~LAtgS~ 347 (779)
.-+.|+|+|||+.|..++...+.|..|++... +. ..... ........ ...--.|++..+|++.++...
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~--g~--------~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDD--GV--------TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SS--------SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCC--Cc--------eeccccceeeeccCCccceeeeeEcCCCCEEEEEcC
Confidence 34679999999977666554455888887643 11 01110 11100000 111457999999998888888
Q ss_pred CCeEEEEec
Q 004015 348 RGTSHLFAI 356 (779)
Q Consensus 348 DGTVhIwdl 356 (779)
.+.|.+|+-
T Consensus 248 ~g~V~~~~p 256 (319)
T d2dg1a1 248 QGRVLVFNK 256 (319)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 999998883
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.16 E-value=4.3 Score=43.71 Aligned_cols=82 Identities=13% Similarity=0.307 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC--
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-- 324 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG-- 324 (779)
-|.+.-||+.+++.+.+++... +...=..+-.|.+|.+++.||+ ++.||..++ +.|++++-+
T Consensus 456 ~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~-l~A~Da~TG--------------e~LW~~~~~~~ 519 (573)
T d1kb0a2 456 FGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGTG 519 (573)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSSC
T ss_pred cccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCe-EEEEECCCC--------------cEeEEEECCCC
Confidence 3789999999999998876432 1111112336778888999997 899999987 566666543
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeC
Q 004015 325 LTNAVIQDISFSDDSN-WIMISSS 347 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~-~LAtgS~ 347 (779)
.... =+.|..||+ ||++.+.
T Consensus 520 ~~~~---P~ty~~~GkQYv~v~~G 540 (573)
T d1kb0a2 520 VVAA---PSTYMVDGRQYVSVAVG 540 (573)
T ss_dssp CCSC---CEEEEETTEEEEEEEEC
T ss_pred cccc---CEEEEECCEEEEEEEeC
Confidence 2222 267778897 6665544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.12 Score=55.04 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCCeEEEEECCCCcEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeec
Q 004015 246 NVGMVIVRDIVSKNVIAQF--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 323 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f--~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~r 323 (779)
..|.+.|||+.++...... ......+...+|||||+.||-.... .|.+.+...+ ....+ ...
T Consensus 89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~--nl~~~~~~~~------------~~~~l--t~~ 152 (465)
T d1xfda1 89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--NIYYCAHVGK------------QAIRV--VST 152 (465)
T ss_dssp CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--EEEEESSSSS------------CCEEE--ECC
T ss_pred ccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc--eEEEEecCCC------------ceEEE--ecc
Confidence 3478999999988653322 2334456678999999999987643 3666665433 00111 111
Q ss_pred CCCcc----------------cEEEEEEcCCCCEEEEEeCC-CeEEEEecCCC
Q 004015 324 GLTNA----------------VIQDISFSDDSNWIMISSSR-GTSHLFAINPL 359 (779)
Q Consensus 324 G~t~a----------------~I~sIaFSpDg~~LAtgS~D-GTVhIwdl~~~ 359 (779)
|.... .-..+-|||||++||....| ..|..|.+..+
T Consensus 153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~ 205 (465)
T d1xfda1 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (465)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc
Confidence 11100 01357799999999987644 44666666443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=91.72 E-value=0.62 Score=46.41 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCCeEEEEECCCCcEE------EEeccC-CCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 004015 245 DNVGMVIVRDIVSKNVI------AQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 317 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v------~~f~aH-t~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~ 317 (779)
...+.|..||+.....+ ..+.+. ......|+++.+|.++++....+. |.+||...+ ....
T Consensus 195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-I~~~dp~~g------------~~~~ 261 (314)
T d1pjxa_ 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG------------QPKM 261 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB------------SCSE
T ss_pred ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-EEEEeCCCC------------EEEE
Confidence 34577888887644322 233322 223467999999999887766665 888875533 1112
Q ss_pred EEEeecCCCcccEEEEEEcCCCCEE-EEEeCCCeEEEEecCCCC
Q 004015 318 LYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLG 360 (779)
Q Consensus 318 l~~l~rG~t~a~I~sIaFSpDg~~L-AtgS~DGTVhIwdl~~~g 360 (779)
...+. .....++||.||++.| ++.+..|+|..+++...|
T Consensus 262 ~i~~p----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 262 RIRCP----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECS----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEECC----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 12221 1347899999999855 555677888888887665
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.70 E-value=8.6 Score=41.26 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCCCeEEEEECCCCcEEEEecc----CCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 004015 245 DNVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 320 (779)
Q Consensus 245 ~~dG~V~VwDl~s~~~v~~f~a----Ht~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~ 320 (779)
..-|.+.-+|+.+++.+.+++- ..++++ -.|-++.+++.||+ ++-||..++ +.|++
T Consensus 441 ~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~-----TagglVf~G~~dg~-l~A~Da~tG--------------e~lW~ 500 (571)
T d2ad6a1 441 KEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY-----TKGGLVWYATLDGY-LKALDNKDG--------------KELWN 500 (571)
T ss_dssp CCCEEEEEECTTTCCEEEEEEESSCCCSBCEE-----ETTTEEEEECTTSE-EEEEETTTC--------------CEEEE
T ss_pred CCcccEEEeccCCCceeeEcCCCCCCCcceeE-----ecCCEEEEECCCCe-EEEEECCCC--------------cEEEE
Confidence 3458999999999998877652 122332 24667788999997 899999987 56666
Q ss_pred eecCCCcccEEEEEEcCCCC-EEEEEeC
Q 004015 321 LQRGLTNAVIQDISFSDDSN-WIMISSS 347 (779)
Q Consensus 321 l~rG~t~a~I~sIaFSpDg~-~LAtgS~ 347 (779)
+.-+.. ..-.-|.|..||+ |||+...
T Consensus 501 ~~l~~~-~~a~P~ty~~dGkqYi~v~~g 527 (571)
T d2ad6a1 501 FKMPSG-GIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp EECSSC-CCSCCEEEEETTEEEEEEEEC
T ss_pred EECCCC-ceecceEEEECCEEEEEEEec
Confidence 654321 1112367777886 6666553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=89.88 E-value=2.4 Score=41.73 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-CEEEEEeCCCCCCCCCCccCCCCceeEEEEeecC
Q 004015 246 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 324 (779)
Q Consensus 246 ~dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DG-t~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG 324 (779)
..|.|..||..++.....+.........|+|++||+++++...+. ....|+.+... +. ....+ ....
T Consensus 59 ~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~--~~--------~~~~~--~~~~ 126 (319)
T d2dg1a1 59 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN--GD--------NLQDI--IEDL 126 (319)
T ss_dssp TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT--SC--------SCEEE--ECSS
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC--Cc--------eeeee--ccCC
Confidence 457788888887776666666666788999999999988765421 11344444332 00 11111 1111
Q ss_pred CCcccEEEEEEcCCCCEEEEEeC----CCeEEEEecCCCCCc
Q 004015 325 LTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLGGS 362 (779)
Q Consensus 325 ~t~a~I~sIaFSpDg~~LAtgS~----DGTVhIwdl~~~gg~ 362 (779)
.......++++.+||++.++... +..-.+|.+.+.++.
T Consensus 127 ~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~ 168 (319)
T d2dg1a1 127 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 168 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred CcccCCcceeEEeccceeecccccccccCcceeEEEecccce
Confidence 12234789999999997766432 224456777665544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=85.83 E-value=2 Score=42.41 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCeEEEEECCCCcEEEEeccCC----CCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEe-
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 321 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt----~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l- 321 (779)
.|.|..||..++.......... +.-..|+|+++|.+|.+++.... |..++.... ...+...
T Consensus 45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~-i~~~~~~g~-------------~~~~~~~~ 110 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG-LLVVQTDGT-------------FEEIAKKD 110 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE-EEEEETTSC-------------EEECCSBC
T ss_pred CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCe-EEEEeCCCc-------------EEEEEecc
Confidence 5788889988876543332221 23457999999998888887644 677776532 1111100
Q ss_pred ecCCCcccEEEEEEcCCCCEEEEE
Q 004015 322 QRGLTNAVIQDISFSDDSNWIMIS 345 (779)
Q Consensus 322 ~rG~t~a~I~sIaFSpDg~~LAtg 345 (779)
..|..-....+++|.+||++.++-
T Consensus 111 ~~g~~~~~pndl~~d~~G~lyvtd 134 (314)
T d1pjxa_ 111 SEGRRMQGCNDCAFDYEGNLWITA 134 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCEEEEE
T ss_pred ccccccCCCcEEEECCCCCEEEec
Confidence 011111125789999999987764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.77 E-value=2.6 Score=41.26 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCC
Q 004015 247 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 326 (779)
Q Consensus 247 dG~V~VwDl~s~~~v~~f~aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t 326 (779)
.+.|.-||..+++.. .+. ....+.++++.++|.+|++. .+| |.++|..++ ....+....-+..
T Consensus 39 ~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~g--l~~~d~~tg------------~~~~l~~~~~~~~ 101 (295)
T d2ghsa1 39 ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG--LFLRDTATG------------VLTLHAELESDLP 101 (295)
T ss_dssp GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE--EEEEETTTC------------CEEEEECSSTTCT
T ss_pred CCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eCc--cEEeecccc------------eeeEEeeeecCCC
Confidence 467888998887543 222 23578999999999988764 454 788998765 2334433333333
Q ss_pred cccEEEEEEcCCCCEEEEEeCC----CeEEEEecCC
Q 004015 327 NAVIQDISFSDDSNWIMISSSR----GTSHLFAINP 358 (779)
Q Consensus 327 ~a~I~sIaFSpDg~~LAtgS~D----GTVhIwdl~~ 358 (779)
...+.++.+.|+|++.++...+ +.-.+|.+..
T Consensus 102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~ 137 (295)
T d2ghsa1 102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK 137 (295)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred cccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence 3358999999999977665432 3456677654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=83.43 E-value=2.5 Score=41.67 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=61.8
Q ss_pred eEEEEECCCCcE--EEEec-cCCCCeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCC
Q 004015 249 MVIVRDIVSKNV--IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 325 (779)
Q Consensus 249 ~V~VwDl~s~~~--v~~f~-aHt~~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~ 325 (779)
.+.+||..+++- +..+. .|..-..+.++.+||++++.++.++..+.+||..+. .+. .+-.+..
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~-~w~-----------~~~~~~~-- 118 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWI-----------PGPDMQV-- 118 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEE-----------ECCCCSS--
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC-ccc-----------ccccccc--
Confidence 477899998652 22222 343344567899999999999888777999998764 111 0001100
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC------CeEEEEecCCC
Q 004015 326 TNAVIQDISFSDDSNWIMISSSR------GTSHLFAINPL 359 (779)
Q Consensus 326 t~a~I~sIaFSpDg~~LAtgS~D------GTVhIwdl~~~ 359 (779)
...-..++..+||++++.|+.+ .++.+||....
T Consensus 119 -~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 119 -ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp -CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred -cccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 0012357788899999998753 36888887654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.24 E-value=3.9 Score=38.65 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=48.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 004015 270 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 349 (779)
Q Consensus 270 ~IsaLaFSPdG~lLATaS~DGt~I~Vwdi~~~~~g~~s~~~~~~s~~~l~~l~rG~t~a~I~sIaFSpDg~~LAtgS~DG 349 (779)
....|+++++|+++++...+++ |..|+.... ... .+... .......|+|.++|+++++....+
T Consensus 141 ~p~~i~~~~~g~~~v~~~~~~~-i~~~d~~~~-------------~~~--~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 141 DPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN-------------NQV--VLPFT-DITAPWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp SCCEEEECTTCCEEEEEGGGTE-EEEECTTTC-------------CEE--ECCCS-SCCSEEEEEECTTCCEEEEETTTT
T ss_pred CcceeeecCCCCEeeecccccc-ccccccccc-------------eee--eeecc-ccCCCccceeeeeeeeeeeecCCC
Confidence 4578999999998887766654 778876542 111 11111 112257899999999888887788
Q ss_pred eEEEEecC
Q 004015 350 TSHLFAIN 357 (779)
Q Consensus 350 TVhIwdl~ 357 (779)
.|..|+..
T Consensus 204 ~i~~~~~~ 211 (260)
T d1rwia_ 204 QVVKLLAG 211 (260)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 87777653
|